Pregenerated sensors for MRPL35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052962Ensembl transcript IDs: ENSMUST00000065103.4, ENSMUST00000205435.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAACCTCGAAAGCCTCACAGCACTCAGCTTCTGCCGCCTCAGGGGTaGGCACAGCACGAGCCACCGGGGCAGAGCCATTGGTGTATGAGG | + |
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Preference number: 1 (lower is better) Translates to: EPRKPHSTQLLPPQG*AQHEPPGQSHWCMR Trigger: CCTCATACACCAATGGCTCTGCCCCGGTGGCTCGTGCTGTGCTCACCCCTGAGGCGGCAGAAGCTGAGTGCTGTGAGGCTTTCGAGGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 90 bp | TACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTaGCTGCAGCCCTTCTACTTCAGCCTGTGGCCGCTGTCCTCTGCC | + |
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Preference number: 1 (lower is better) Translates to: YKSCMYEEVPFPSEV*LQPFYFSLWPLSSA Trigger: GGCAGAGGACAGCGGCCACAGGCTGAAGTAGAAGGGCTGCAGGCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 90 bp | CTCCATCTGACTACTAACAGGCCCGACCTGACCCTACTTAGCTTCTaGGATCAGACAAAGTCATGTGCATTCAGGATGGAATGGCCAGAC | + |
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Preference number: 1 (lower is better) Translates to: LHLTTNRPDLTLLSF*DQTKSCAFRMEWPD Trigger: GTCTGGCCATTCCATCCTGAATGCACATGACTTTGTCTGATCTCAGAAGCTAAGTAGGGTCAGGTCGGGCCTGTTAGTAGTCAGATGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 90 bp | TCAATGAGGCAGGCTGCTTTGTTTGGAAATGCTTCCAGATGGTTCTaGTGGGAGAGCAGAGAGTCACTCTCTCGGCCTGCAGCATCAATT | + |
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Preference number: 1 (lower is better) Translates to: SMRQAALFGNASRWF*WESRESLSRPAASI Trigger: AATTGATGCTGCAGGCCGAGAGAGTGACTCTCTGCTCTCCCATCAGAACCATCTGGAAGCATTTCCAAACAAAGCAGCCTGCCTCATTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 90 bp | CAGGATGGCCCAATGAGAGTTCCCTGGCAATTAAGAGAGAAGAGATaGCAAGAGTTGAGGGTTGTAATGTTAAAGGGAACCCAAAGGTTC | + |
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Preference number: 1 (lower is better) Translates to: QDGPMRVPWQLREKR*QELRVVMLKGTQRF Trigger: GAACCTTTGGGTTCCCTTTAACATTACAACCCTCAACTCTTGTCATCTCTTCTCTCTTAATTGCCAGGGAACTCTCATTGGGCCATCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 90 bp | CATTGCATGATGGCATTGATTCAGACTTACGAGGAAAAGGCAGGATaGCCCAATGAGAGTTCCCTGGCAATTAAGAGAGAAGAGATGACA | + |
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Preference number: 1 (lower is better) Translates to: HCMMALIQTYEEKAG*PNESSLAIKREEMT Trigger: TGTCATCTCTTCTCTCTTAATTGCCAGGGAACTCTCATTGGGCCATCCTGCCTTTTCCTCGTAAGTCTGAATCAATGCCATCATGCAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 90 bp | ATCCTTAATAGAATTTTCAATGAGGCAGGCTGCTTTGTTTGGAAATaGTTCCAGATGGTTCTGATGGGAGAGCAGAGAGTCACTCTCTCG | + |
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Preference number: 1 (lower is better) Translates to: ILNRIFNEAGCFVWK*FQMVLMGEQRVTLS Trigger: CGAGAGAGTGACTCTCTGCTCTCCCATCAGAACCATCTGGAAGCATTTCCAAACAAAGCAGCCTGCCTCATTGAAAATTCTATTAAGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 90 bp | CTGCTCTCTATCACCTGCCCCCACACATACACACATACACACATATaGGGTTTTACGACATTCTACATCCCTCTCCATTTAATGAAGAAC | + |
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Preference number: 1 (lower is better) Translates to: LLSITCPHTYTHTHI*GFTTFYIPLHLMKN Trigger: GTTCTTCATTAAATGGAGAGGGATGTAGAATGTCGTAAAACCCCATATGTGTGTATGTGTGTATGTGTGGGGGCAGGTGATAGAGAGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 90 bp | CCAACAGAGTTGACAGGTAGAGAGCAAAGTCACACAACTCAGACTTaGACGGGTAGAGTATTTACTACTAGTGTCAGATCACAGTCATTT | + |
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Preference number: 1 (lower is better) Translates to: PTELTGREQSHTTQT*TGRVFTTSVRSQSF Trigger: AAATGACTGTGATCTGACACTAGTAGTAAATACTCTACCCGTTCAAGTCTGAGTTGTGTGACTTTGCTCTCTACCTGTCAACTCTGTTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 90 bp | GTTGTAATGTTAAAGGGAACCCAAAGGTTCAGGCTGAAGGGAGTCTaGGAGATAGAAACTTTACATAAACAAAAGCCAAGACTAAAGAGA | + |
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Preference number: 1 (lower is better) Translates to: VVMLKGTQRFRLKGV*EIETLHKQKPRLKR Trigger: TCTCTTTAGTCTTGGCTTTTGTTTATGTAAAGTTTCTATCTCTCAGACTCCCTTCAGCCTGAACCTTTGGGTTCCCTTTAACATTACAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 90 bp | ATAAATGATAGCTCGTGTATAAGATTGTATAAGGTTGGCATGAGGTaGAGCAGAGTTTTGCAGATTTGCTTAAATATGACAAGTGTTCAA | + |
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Preference number: 1 (lower is better) Translates to: INDSSCIRLYKVGMR*SRVLQICLNMTSVQ Trigger: TTGAACACTTGTCATATTTAAGCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATACAATCTTATACACGAGCTATCATTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | GCCGCCTCAGGGGTGAGCACAGCACGAGCCACCGGGGCAGAGCCATTGGTGTATAGTTCGAGGCCAGCCTaGTCTACAAAGAGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: AASGVSTARATGAEPLVYSSRPA*STKSSR Trigger: CCTGGAACTCTTTGTAGACCAGGCTGGCCTCGAACT...ATACACCAATGGCTCTGCCCCGGTGGCTCGTGCTGTGCTCACCCCTGAGGCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | GCCGCCTCAGGGGTGAGCACAGCACGAGCCACCGGGGCAGAGCCATTGGTGTATTGGTCCTCAAAGTCCTaGCCTACCTGCCATCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: AASGVSTARATGAEPLVYWSSKS*PTCHQN Trigger: GTTTTGATGGCAGGTAGGCCAGGACTTTGAGGACCA...ATACACCAATGGCTCTGCCCCGGTGGCTCGTGCTGTGCTCACCCCTGAGGCGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR GCA 90 bp | GCCGCCTCAGGGGTGAGCACAGCACGAGCCACCGGGGCAGAGCCATTGGTGTATACCACGTGTAACTTTTaGATCTTTCTCCATCTGACT | + |
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Preference number: 2 (lower is better) Translates to: AASGVSTARATGAEPLVYTTCNF*IFLHLT Trigger: AGTCAGATGGAGAAAGATGCAAAAGTTACACGTGGT...ATACACCAATGGCTCTGCCCCGGTGGCTCGTGCTGTGCTCACCCCTGAGGCGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR GCA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCGCTTCATCCAATTCCTaGCCTCCCCAAAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCASSNS*PPQSWG Trigger: GCCCCAGCTTTGGGGAGGGCAGGAATTGGATGAAGC...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | AAGTCGGAGGAAGCGATGCACGACCGACTTTACCGTCTTTCTCTTGCCTTTCCGGCAGTTCCGATAGGTTaGAGATGCCAAGACATTCAA | + |
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Preference number: 2 (lower is better) Translates to: KSEEAMHDRLYRLSLAFPAVPIG*RCQDIQ Trigger: TTGAATGTCTTGGCATCTTCAACCTATCGGAACTGC...CGGAAAGGCAAGAGAAAGACGGTAAAGTCGGTCGTGCATCGCTTCCTCCGACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205435.2 |
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| 3UTR-3UTR TCA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCGCTTCCAGATGGTTCTaGTGGGAGAGCAGAGAGTCA | + |
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Preference number: 2 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCASRWF*WESRES Trigger: TGACTCTCTGCTCTCCCATCAGAACCATCTGGAAGC...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | GTCTCATTAAATGACAGGCAACTTTCTCCCTTAGTTTCCACCCTGCGTTTTAGATGCCCTCCCCAAAGCTaGGGCAGAGAGTTACAGGTA | + |
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Preference number: 2 (lower is better) Translates to: VSLNDRQLSPLVSTLRFRCPPQS*GRELQV Trigger: TACCTGTAACTCTCTGCCCCAGCTTTGGGGAGGGCA...TCTAAAACGCAGGGTGGAAACTAAGGGAGAAAGTTGCCTGTCATTTAATGAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | TACCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTCCGGGGCAGAGCCATTaGTGTATGAGGTGCTCAAGT | + |
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Preference number: 2 (lower is better) Translates to: YPHTKAVCMKKFPFHPRCPGQSH*CMRCSS Trigger: ACTTGAGCACCTCATACACCAATGGCTCTGCCCCGG...ACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGGTTCAATTCCCAGCACCAACATGGTGGCTCACAACCATCTGTAATTCCTTAAGAGAGAAGAGATaGCAAGAGTTGAGGGTTGTA | + |
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Preference number: 2 (lower is better) Translates to: AQVQFPAPTWWLTTICNSLREKR*QELRVV Trigger: TACAACCCTCAACTCTTGTCATCTCTTCTCTCTTAA...GGAATTACAGATGGTTGTGAGCCACCATGTTGGTGCTGGGAATTGAACCTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCAAAATTCAGTGCCTTTaGAAAATTGGGCAGAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCKIQCL*KIGQRP Trigger: AGGCCTCTGCCCAATTTTTCAAAGGCACTGAATTTT...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR GCA 90 bp | TATAAGGTTGGCATGAGGTGCAGCAGAGTTTTGCAGATTTGCTTAAATATGACATTTCCATCCGAGGTGTaGCTGCAGCCCTTCTACTTC | + |
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Preference number: 2 (lower is better) Translates to: YKVGMRCSRVLQICLNMTFPSEV*LQPFYF Trigger: GAAGTAGAAGGGCTGCAGGCACACCTCGGATGGAAA...TGTCATATTTAAGCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | GTCTCATTAAATGACAGGCAACTTTCTCCCTTAGTTTCCACCCTGCGTTTTAGACCAACAACTTTCCTCTaGCCTTCAAGGGCACATACA | + |
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Preference number: 2 (lower is better) Translates to: VSLNDRQLSPLVSTLRFRPTTFL*PSRAHT Trigger: TGTATGTGCCCTTGAAGGCCAGAGGAAAGTTGTTGG...TCTAAAACGCAGGGTGGAAACTAAGGGAGAAAGTTGCCTGTCATTTAATGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR GCA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCTGTCTGTTTAGCATGTaGAAAAACCTGGATACCATC | + |
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Preference number: 2 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCCLFSM*KNLDTI Trigger: GATGGTATCCAGGTTTTTGCACATGCTAAACAGACA...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCGCATTCAGGATGGAATaGCCAGACTCTTTTCTAAAA | + |
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Preference number: 2 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCAFRME*PDSFLK Trigger: TTTTAGAAAAGAGTCTGGCCATTCCATCCTGAATGC...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | TACCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTATCAGTCTCATTAAATaGCAGGCAACTTTCTCCCTT | + |
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Preference number: 2 (lower is better) Translates to: YPHTKAVCMKKFPFHPRCISLIK*QATFSL Trigger: AAGGGAGAAAGTTGCCTGTCATTTAATGAGACTGAT...ACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | TACCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGACTCTTTTCTAAAATaGATGATACTAGCTGGGCGT | + |
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Preference number: 2 (lower is better) Translates to: YPHTKAVCMKKFPFHPRCDSFLK*MILAGR Trigger: ACGCCCAGCTAGTATCATTCATTTTAGAAAAGAGTC...ACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | TTTACGACATTCTACATCCCTCTCCATTTAATGAAGAACTGGCTTCAAATGGATCTGCAGCATCAATTCTaGCTCTCTGTAAACCACGTG | + |
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Preference number: 2 (lower is better) Translates to: FTTFYIPLHLMKNWLQMDLQHQF*LSVNHV Trigger: CACGTGGTTTACAGAGAGTCAGAATTGATGCTGCAG...ATCCATTTGAAGCCAGTTCTTCATTAAATGGAGAGGGATGTAGAATGTCGTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CAA 90 bp | TGCCTTCAATTTATATCAGGGATAAATGATAGCTCGTGTATAAGATaGTATAAGGTTGGCATGAGGTGCAGCAGAGTTTTGCAGATTTGC | + |
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Preference number: 2 (lower is better) Translates to: CLQFISGINDSSCIR*YKVGMRCSRVLQIC Trigger: GCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATACAATCTTATACACGAGCTATCATTTATCCCTGATATAAATTGAAGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | TTTACGACATTCTACATCCCTCTCCATTTAATGAAGAACTGGCTTCAAATGGATAGGCTGAAGGGAGTCTaGGAGATAGAAACTTTACAT | + |
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Preference number: 2 (lower is better) Translates to: FTTFYIPLHLMKNWLQMDRLKGV*EIETLH Trigger: ATGTAAAGTTTCTATCTCTCAGACTCCCTTCAGCCT...ATCCATTTGAAGCCAGTTCTTCATTAAATGGAGAGGGATGTAGAATGTCGTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | TATAAGGTTGGCATGAGGTGCAGCAGAGTTTTGCAGATTTGCTTAAATATGACACAAAAGCTGTATGTATaGAGAAGTTCCCTTTCCATC | + |
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Preference number: 2 (lower is better) Translates to: YKVGMRCSRVLQICLNMTQKLYV*RSSLSI Trigger: GATGGAAAGGGAACTTCTTCATACATACAGCTTTTG...TGTCATATTTAAGCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR GCA 90 bp | TTTACGACATTCTACATCCCTCTCCATTTAATGAAGAACTGGCTTCAAATGGATTTCAATGAGGCAGGCTaGTTTGTTTGGAAATGCTTC | + |
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Preference number: 2 (lower is better) Translates to: FTTFYIPLHLMKNWLQMDFNEAG*FVWKCF Trigger: GAAGCATTTCCAAACAAAGCAGCCTGCCTCATTGAA...ATCCATTTGAAGCCAGTTCTTCATTAAATGGAGAGGGATGTAGAATGTCGTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR TCA 90 bp | TATAAGGTTGGCATGAGGTGCAGCAGAGTTTTGCAGATTTGCTTAAATATGACAAAACAAAACAAAAACTaGATGGTCCTCAAAGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: YKVGMRCSRVLQICLNMTKQNKN*MVLKVL Trigger: CAGGACTTTGAGGACCATTCAGTTTTTGTTTTGTTT...TGTCATATTTAAGCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR GCA 90 bp | TTTACGACATTCTACATCCCTCTCCATTTAATGAAGAACTGGCTTCAAATGGATAACGCATACTCACTTTaGAAGGGCATTATGTACACA | + |
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Preference number: 2 (lower is better) Translates to: FTTFYIPLHLMKNWLQMDNAYSL*KGIMYT Trigger: TGTGTACATAATGCCCTTGCAAAGTGAGTATGCGTT...ATCCATTTGAAGCCAGTTCTTCATTAAATGGAGAGGGATGTAGAATGTCGTAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CCA 90 bp | TTTACGACATTCTACATCCCTCTCCATTTAATGAAGAACTGGCTTCAAATGGATTTCTATGACCAACTCTaGGAATGTTTAATGCACAAT | + |
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Preference number: 2 (lower is better) Translates to: FTTFYIPLHLMKNWLQMDFYDQL*ECLMHN Trigger: ATTGTGCATTAAACATTCCCAGAGTTGGTCATAGAA...ATCCATTTGAAGCCAGTTCTTCATTAAATGGAGAGGGATGTAGAATGTCGTAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 72 bp | CACAGCACGAGCCACCGGGGCAGAGCCATTGGTGTATaGGGTGCTCAAGTCACACGCCTGCTCTCTATCACC | + |
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Preference number: 3 (lower is better) Translates to: HSTSHRGRAIGV*GAQVTRLLSIT Trigger: GGTGATAGAGAGCAGGCGTGTGACTTGAGCACCTCATACACCAATGGCTCTGCCCCGGTGGCTCGTGCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | GTCTCCCTCCTTAGCTTCAGCACAGTGCCACAGATGTaGGGGAAGCAGGAACTGTGCAGGCGAGGAACCTCG | + |
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Preference number: 3 (lower is better) Translates to: VSLLSFSTVPQM*GKQELCRRGTS Trigger: CGAGGTTCCTCGCCTGCACAGTTCCTGCTTCCCGCACATCTGTGGCACTGTGCTGAAGCTAAGGAGGGAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | AGCACAGTGCCACAGATGTGCGGGAAGCAGGAACTGTaGAGGCGAGGAACCTCGAAAGCCTCACAGCACTCA | + |
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Preference number: 3 (lower is better) Translates to: STVPQMCGKQEL*RRGTSKASQHS Trigger: TGAGTGCTGTGAGGCTTTCGAGGTTCCTCGCCTGCACAGTTCCTGCTTCCCGCACATCTGTGGCACTGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | TGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCCTaGAGCCCTTCTACTTCAGCCTGTGGCCGCTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: CMKKFPFHPRCA*SPSTSACGRCP Trigger: AGGACAGCGGCCACAGGCTGAAGTAGAAGGGCTGCAGGCACACCTCGGATGGAAAGGGAACTTCTTCATACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | ACATTCAAGGGACGAAATATTCCTCAGTCTCGGGTGTaGTTCCTAGGGCAGGGTGGATCCAGTGAACGCGGG | + |
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Preference number: 3 (lower is better) Translates to: TFKGRNIPQSRV*FLGQGGSSERG Trigger: CCCGCGTTCACTGGATCCACCCTGCCCTAGGAAGCACACCCGAGACTGAGGAATATTTCGTCCCTTGAATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205435.2 |
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| 3UTR GCA 72 bp | TGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTaGCTGCAGCCCTTCTACTTCAGCCTGTGGCCGCTG | + |
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Preference number: 3 (lower is better) Translates to: CMYEEVPFPSEV*LQPFYFSLWPL Trigger: CAGCGGCCACAGGCTGAAGTAGAAGGGCTGCAGGCACACCTCGGATGGAAAGGGAACTTCTTCATACATACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 72 bp | TCTCTTGCTTCATCCAATTCCTGCCCTCCCCAAAGCTaGGGCAGAGAGTTACAGGTAGGAGACAGTGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: SLASSNSCPPQS*GRELQVGDSEE Trigger: CTCCTCACTGTCTCCTACCTGTAACTCTCTGCCCCAGCTTTGGGGAGGGCAGGAATTGGATGAAGCAAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 72 bp | CAGGCTGCTTTGTTTGGAAATGCTTCCAGATGGTTCTaGTGGGAGAGCAGAGAGTCACTCTCTCGGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: QAALFGNASRWF*WESRESLSRPA Trigger: TGCAGGCCGAGAGAGTGACTCTCTGCTCTCCCATCAGAACCATCTGGAAGCATTTCCAAACAAAGCAGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CAA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCACCGGGGCAGAGCCATaGGTGTATGAGGTGCTCAAG | + |
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Preference number: 3 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCTGAEP*VYEVLK Trigger: CTTGAGCACCTCATACACCAATGGCTCTGCCCCGGT...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 72 bp | AAAGGCTCCCCTACCCACATACAAAAGCTGTATGTATaGAGAAGTTCCCTTTCCATCCGAGGTGTGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: KGSPTHIQKLYV*RSSLSIRGVPA Trigger: TGCAGGCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGGTAGGGGAGCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CAA 90 bp | GCCCAGGTTCAATTCCCAGCACCAACATGGTGGCTCACAACCATCTGTAATTCCCATTGCATGATGGCATaGATTCAGACTTACGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: AQVQFPAPTWWLTTICNSHCMMA*IQTYEE Trigger: TTCCTCGTAAGTCTGAATCAATGCCATCATGCAATG...GGAATTACAGATGGTTGTGAGCCACCATGTTGGTGCTGGGAATTGAACCTGGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 72 bp | ATTAAGACAGGCATTCCTGGCGCAGTTCCGATAGGTTaGAGATGCCAAGACATTCAAGGGACGAAATATTCC | + |
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Preference number: 3 (lower is better) Translates to: IKTGIPGAVPIG*RCQDIQGTKYS Trigger: GGAATATTTCGTCCCTTGAATGTCTTGGCATCTTCAACCTATCGGAACTGCGCCAGGAATGCCTGTCTTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205435.2 |
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| 3UTR GCA 72 bp | AGAATTTTCAATGAGGCAGGCTGCTTTGTTTGGAAATaGTTCCAGATGGTTCTGATGGGAGAGCAGAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: RIFNEAGCFVWK*FQMVLMGEQRV Trigger: GACTCTCTGCTCTCCCATCAGAACCATCTGGAAGCATTTCCAAACAAAGCAGCCTGCCTCATTGAAAATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 72 bp | ATGGCATTGATTCAGACTTACGAGGAAAAGGCAGGATaGCCCAATGAGAGTTCCCTGGCAATTAAGAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: MALIQTYEEKAG*PNESSLAIKRE Trigger: TTCTCTCTTAATTGCCAGGGAACTCTCATTGGGCCATCCTGCCTTTTCCTCGTAAGTCTGAATCAATGCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 72 bp | GTAATTCCAATGCCAGTAGACCCAACAACTTTCCTCTaGCCTTCAAGGGCACATACACACATGCAGACAAAA | + |
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Preference number: 3 (lower is better) Translates to: VIPMPVDPTTFL*PSRAHTHMQTK Trigger: TTTTGTCTGCATGTGTGTATGTGCCCTTGAAGGCCAGAGGAAAGTTGTTGGGTCTACTGGCATTGGAATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CAA 90 bp | CCCACATACAAAAGCTGTATGTATGAAGAAGTTCCCTTTCCATCCGAGGTGTGCAAAAATTCAGTGCCTTaGAAAAATTGGGCAGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: PTYKSCMYEEVPFPSEVCKNSVP*KNWAEA Trigger: GGCCTCTGCCCAATTTTTCAAAGGCACTGAATTTTT...GCACACCTCGGATGGAAAGGGAACTTCTTCATACATACAGCTTTTGTATGTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 72 bp | ATCACCTGCCCCCACACATACACACATACACACATATaGGGTTTTACGACATTCTACATCCCTCTCCATTTA | + |
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Preference number: 3 (lower is better) Translates to: ITCPHTYTHTHI*GFTTFYIPLHL Trigger: TAAATGGAGAGGGATGTAGAATGTCGTAAAACCCCATATGTGTGTATGTGTGTATGTGTGGGGGCAGGTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR-3UTR CAA 90 bp | TATAAGGTTGGCATGAGGTGCAGCAGAGTTTTGCAGATTTGCTTAAATATGACAGGCAGGCTGCTTTGTTaGGAAATGCTTCCAGATGGT | + |
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Preference number: 3 (lower is better) Translates to: YKVGMRCSRVLQICLNMTGRLLC*EMLPDG Trigger: ACCATCTGGAAGCATTTCCAAACAAAGCAGCCTGCC...TGTCATATTTAAGCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 72 bp | CCAATGAGAGTTCCCTGGCAATTAAGAGAGAAGAGATaGCAAGAGTTGAGGGTTGTAATGTTAAAGGGAACC | + |
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Preference number: 3 (lower is better) Translates to: PMRVPWQLREKR*QELRVVMLKGT Trigger: GGTTCCCTTTAACATTACAACCCTCAACTCTTGTCATCTCTTCTCTCTTAATTGCCAGGGAACTCTCATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 72 bp | AAAAATTCAGTGCCTTTGAAAAATTGGGCAGAGGCCTaGAGAGACAGTTCAGCATTTAAGAACTGGCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: KNSVPLKNWAEA*RDSSAFKNWLF Trigger: GAACAGCCAGTTCTTAAATGCTGAACTGTCTCTCCAGGCCTCTGCCCAATTTTTCAAAGGCACTGAATTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CCA 72 bp | CTTAATAGAATTTTCAATGAGGCAGGCTGCTTTGTTTaGAAATGCTTCCAGATGGTTCTGATGGGAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: LNRIFNEAGCFV*KCFQMVLMGEQ Trigger: CTGCTCTCCCATCAGAACCATCTGGAAGCATTTCCAAACAAAGCAGCCTGCCTCATTGAAAATTCTATTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | AGCTGGTACAGTTTACAGTTTAACGCATACTCACTTTaGAAGGGCATTATGTACACAAAGACCCACATTCCA | + |
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Preference number: 3 (lower is better) Translates to: SWYSLQFNAYSL*KGIMYTKTHIP Trigger: TGGAATGTGGGTCTTTGTGTACATAATGCCCTTGCAAAGTGAGTATGCGTTAAACTGTAAACTGTACCAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR TCA 72 bp | TTAAAGGGAACCCAAAGGTTCAGGCTGAAGGGAGTCTaGGAGATAGAAACTTTACATAAACAAAAGCCAAGA | + |
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Preference number: 3 (lower is better) Translates to: LKGTQRFRLKGV*EIETLHKQKPR Trigger: TCTTGGCTTTTGTTTATGTAAAGTTTCTATCTCTCAGACTCCCTTCAGCCTGAACCTTTGGGTTCCCTTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | ATTGGGAATAGGCATGTAAGATGTCTGTTTAGCATGTaGAAAAACCTGGATACCATCTCAATTCCACACAAA | + |
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Preference number: 3 (lower is better) Translates to: IGNRHVRCLFSM*KNLDTISIPHK Trigger: TTTGTGTGGAATTGAGATGGTATCCAGGTTTTTGCACATGCTAAACAGACATCTTACATGCCTATTCCCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR GCA 72 bp | TCATTCATCCTTAATAGAATTTTCAATGAGGCAGGCTaGTTTGTTTGGAAATGCTTCCAGATGGTTCTGATG | + |
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Preference number: 3 (lower is better) Translates to: SFILNRIFNEAG*FVWKCFQMVLM Trigger: CATCAGAACCATCTGGAAGCATTTCCAAACAAAGCAGCCTGCCTCATTGAAAATTCTATTAAGGATGAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS-3UTR TCA 90 bp | GTTCAGCATTTAAGAACTGGCTGTTCTTGTAGAGGGCCCAGGTTCAATTCCCAGGGTGTCCAACAGATGTaGCAAGTCTTGGAGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: VQHLRTGCSCRGPRFNSQGVQQM*QVLEQR Trigger: CCTCTGCTCCAAGACTTGTCACATCTGTTGGACACC...CTGGGAATTGAACCTGGGCCCTCTACAAGAACAGCCAGTTCTTAAATGCTGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS-3UTR TCA 90 bp | GCCCAGGTTCAATTCCCAGCACCAACATGGTGGCTCACAACCATCTGTAATTCCGCAGTTCCGATAGGTTaGAGATGCCAAGACATTCAA | + |
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Preference number: 4 (lower is better) Translates to: AQVQFPAPTWWLTTICNSAVPIG*RCQDIQ Trigger: TTGAATGTCTTGGCATCTTCAACCTATCGGAACTGC...GGAATTACAGATGGTTGTGAGCCACCATGTTGGTGCTGGGAATTGAACCTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS-3UTR GCA 90 bp | GCCCTGCTACTCTATGTACCTCTAAGGAAAACAGCTCACACCTACCTTTTTACTTGTGGTATGCCCATATaGCAGGTGTCCAACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: ALLLYVPLRKTAHTYLFTCGMPI*QVSNRC Trigger: ACATCTGTTGGACACCTGGCATATGGGCATACCACA...AGTAAAAAGGTAGGTGTGAGCTGTTTTCCTTAGAGGTACATAGAGTAGCAGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS-3UTR GCA 90 bp | TATAAGGTTGGCATGAGGTGCAGCAGAGTTTTGCAGATTTGCTTAAATATGACACGCCAGCGTACCAGTTaGGCCTCTTCCAGAAAGATG | + |
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Preference number: 4 (lower is better) Translates to: YKVGMRCSRVLQICLNMTRQRTS*ASSRKM Trigger: CATCTTTCTGGAAGAGGCGCAACTGGTACGCTGGCG...TGTCATATTTAAGCAAATCTGCAAAACTCTGCTGCACCTCATGCCAACCTTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| 3UTR CAA 72 bp | TTTATATCAGGGATAAATGATAGCTCGTGTATAAGATaGTATAAGGTTGGCATGAGGTGCAGCAGAGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: FISGINDSSCIR*YKVGMRCSRVL Trigger: CAAAACTCTGCTGCACCTCATGCCAACCTTATACAATCTTATACACGAGCTATCATTTATCCCTGATATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS TCA 90 bp | CCTCCCGCGCCGACCCTCTTCTCAGTGAAGCTGTCAATAGAACACTaGCCTGAGGCAGCTCTCACGGCGCCCGTGAAGATGGAAGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: PPAPTLFSVKLSIEH*PEAALTAPVKMEAA Trigger: GGCGGCTTCCATCTTCACGGGCGCCGTGAGAGCTGCCTCAGGTCAGTGTTCTATTGACAGCTTCACTGAGAAGAGGGTCGGCGCGGGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205435.2 |
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| CDS-3UTR CAA 90 bp | GCCCTGCTACTCTATGTACCTCTAAGGAAAACAGCTCACACCTACCTTTTTACTTTTACCGTCTTTCTCTaGCCTTTCCGTGTGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: ALLLYVPLRKTAHTYLFTFTVFL*PFRVLQ Trigger: CTGCAGCACACGGAAAGGCAAGAGAAAGACGGTAAA...AGTAAAAAGGTAGGTGTGAGCTGTTTTCCTTAGAGGTACATAGAGTAGCAGGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS-3UTR CAA 90 bp | GCCCTGCTACTCTATGTACCTCTAAGGAAAACAGCTCACACCTACCTTTTTACTCGCAGTTCCGATAGGTaGAAGATGCCAAGACATTCA | + |
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Preference number: 5 (lower is better) Translates to: ALLLYVPLRKTAHTYLFTRSSDR*KMPRHS Trigger: TGAATGTCTTGGCATCTTCAACCTATCGGAACTGCG...AGTAAAAAGGTAGGTGTGAGCTGTTTTCCTTAGAGGTACATAGAGTAGCAGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS-3UTR CAA 90 bp | AAACAGCTCACACCTACCTTTTTACTCCATATGAACCTACTGATACAACTAAGATCGCCAGCGTACCAGTaGCGCCTCTTCCAGAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: KQLTPTFLLHMNLLIQLRSPAYQ*RLFQKD Trigger: ATCTTTCTGGAAGAGGCGCAACTGGTACGCTGGCGA...TCTTAGTTGTATCAGTAGGTTCATATGGAGTAAAAAGGTAGGTGTGAGCTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065103.4 |
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| CDS TCA 72 bp | CCGACCCTCTTCTCAGTGAAGCTGTCAATAGAACACTaGCCTGAGGCAGCTCTCACGGCGCCCGTGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: PTLFSVKLSIEH*PEAALTAPVKM Trigger: CATCTTCACGGGCGCCGTGAGAGCTGCCTCAGGTCAGTGTTCTATTGACAGCTTCACTGAGAAGAGGGTCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205435.2 |
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| CDS TCA 72 bp | CCTCTTCTCAGTGAAGCTGTCAATAGAACACTGACCTaGGGCAGCTCTCACGGCGCCCGTGAAGATGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: PLLSEAVNRTLT*GSSHGAREDGS Trigger: GCTTCCATCTTCACGGGCGCCGTGAGAGCTGCCTCAGGTCAGTGTTCTATTGACAGCTTCACTGAGAAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205435.2 |
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