RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRPL27 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024414

Ensembl transcript IDs: ENSMUST00000025278.8

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTaGGCCATCTCTCCAGCCTCTTCTGTGGAGATTTTGTTCTCACCC +
Preference number: 1 (lower is better)
Translates to: IELRTSGRAVSALNC*AISPASSVEILFSP
Trigger: GGGTGAGAACAAAATCTCCACAGAAGAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR TCA 90 bp ATTGTTGCTGTCTTCAGACACACAAGAAGAGATTATAGATGGTTGTaGGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGGA +
Preference number: 1 (lower is better)
Translates to: IVAVFRHTRRDYRWL*ATMWLLGIELRTSG
Trigger: TCCAGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATCTCTTCTTGTGTGTCTGAAGACAGCAACAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR-3UTR CCA 90 bp GGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCTACTGTTCCTGTGACCTaGGCTCCAGGCTCCATCCAA +
Preference number: 2 (lower is better)
Translates to: GPLEEQSVLLTAEPSLQPTVPVT*APGSIQ
Trigger: TTGGATGGAGCCTGGAGCCCAGGTCACAGGAACAGT...AGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR CAA 90 bp ATCTCTCCAGCCTCTTCTGTGGAGATTTTGTTCTCACCCAGACCCTaGACTTCCATCATCACTGTTCCTGTGACCTGGGCTCCAGGCTCC +
Preference number: 2 (lower is better)
Translates to: ISPASSVEILFSPRP*TSIITVPVTWAPGS
Trigger: GGAGCCTGGAGCCCAGGTCACAGGAACAGTGATGATGGAAGTCAAGGGTCTGGGTGAGAACAAAATCTCCACAGAAGAGGCTGGAGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR CAA 90 bp GAAGAGATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATaGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCT +
Preference number: 2 (lower is better)
Translates to: EEIIDGCEPPCGCWE*NSGPLEEQSVLLTA
Trigger: AGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATCTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR-3UTR TCA 90 bp TACGCATACATTGTTGCTGTCTTCAGACACACAAGAAGAGATTATAGATGGTTGTCATCACTGTTCCTGTaGCCTGGGCTCCAGGCTCCA +
Preference number: 2 (lower is better)
Translates to: YAYIVAVFRHTRRDYRWLSSLFL*PGLQAP
Trigger: TGGAGCCTGGAGCCCAGGTCACAGGAACAGTGATGA...CAACCATCTATAATCTCTTCTTGTGTGTCTGAAGACAGCAACAATGTATGCGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR CCA 72 bp AGACCCTTGACTTCCATCATCACTGTTCCTGTGACCTaGGCTCCAGGCTCCATCCAATGGTCTCAACAGGAC +
Preference number: 3 (lower is better)
Translates to: RPLTSIITVPVT*APGSIQWSQQD
Trigger: GTCCTGTTGAGACCATTGGATGGAGCCTGGAGCCCAGGTCACAGGAACAGTGATGATGGAAGTCAAGGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR TCA 72 bp AGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTaGGCCATCTCTCCAGCCTCTTCTGTGGAGATTTTG +
Preference number: 3 (lower is better)
Translates to: RTSGRAVSALNC*AISPASSVEIL
Trigger: CAAAATCTCCACAGAAGAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR CCA 72 bp GAGATTATAGATGGTTGTGAGCCACCATGTGGTTGTTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCA +
Preference number: 3 (lower is better)
Translates to: EIIDGCEPPCGC*ELNSGPLEEQS
Trigger: TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATCTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR TCA 72 bp GTCTTCAGACACACAAGAAGAGATTATAGATGGTTGTaGGCCACCATGTGGTTGTTGGGAATTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: VFRHTRRDYRWL*ATMWLLGIELR
Trigger: CCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATCTCTTCTTGTGTGTCTGAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR GCA 90 bp ATCATCACTGTTCCTGTGACCTGGGCTCCAGGCTCCATCCAATGGTCTCAACAGCAGGGCTGTCACTGCTaGCCGCGTCCTCAGCGTAAG +
Preference number: 4 (lower is better)
Translates to: IITVPVTWAPGSIQWSQQQGCHC*PRPQRK
Trigger: CTTACGCTGAGGACGCGGGCAGCAGTGACAGCCCTG...CTGTTGAGACCATTGGATGGAGCCTGGAGCCCAGGTCACAGGAACAGTGATGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR GCA 90 bp ATCATCACTGTTCCTGTGACCTGGGCTCCAGGCTCCATCCAATGGTCTCAACAGATGTCTGACAGCGAGTaGTGTGGGTGCTGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: IITVPVTWAPGSIQWSQQMSDSE*CGCCGA
Trigger: AGCCCCACAGCACCCACAGCACTCGCTGTCAGACAT...CTGTTGAGACCATTGGATGGAGCCTGGAGCCCAGGTCACAGGAACAGTGATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR CCA 90 bp TTCCATCATCACTGTTCCTGTGACCTGGGCTCCAGGCTCCATCCAATGGTCTCACCGTGTTTTTGGGATTaGGCACGTAGACATCTTTCG +
Preference number: 4 (lower is better)
Translates to: FHHHCSCDLGSRLHPMVSPCFWD*ARRHLS
Trigger: CGAAAGATGTCTACGTGCCCAATCCCAAAAACACGG...TGAGACCATTGGATGGAGCCTGGAGCCCAGGTCACAGGAACAGTGATGATGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR CCA 90 bp ATTTTGTTCTCACCCAGACCCTTGACTTCCATCATCACTGTTCCTGTGACCTGGAGGTTCCCTCAGGTTTaGCAGGAACCACGTGGACAA +
Preference number: 4 (lower is better)
Translates to: ILFSPRPLTSIITVPVTWRFPQV*QEPRGQ
Trigger: TTGTCCACGTGGTTCCTGCCAAACCTGAGGGAACCT...CCAGGTCACAGGAACAGTGATGATGGAAGTCAAGGGTCTGGGTGAGAACAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
3UTR CAA 72 bp ATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATaGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: IDGCEPPCGCWE*NSGPLEEQSVL
Trigger: GAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR CCA 90 bp GTGGAGATTTTGTTCTCACCCAGACCCTTGACTTCCATCATCACTGTTCCTGTGCAGCCTCCGTGTTTTTaGGATTGGGCACGTAGACAT +
Preference number: 4 (lower is better)
Translates to: VEILFSPRPLTSIITVPVQPPCF*DWARRH
Trigger: ATGTCTACGTGCCCAATCCCAAAAACACGGAGGCTG...CACAGGAACAGTGATGATGGAAGTCAAGGGTCTGGGTGAGAACAAAATCTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR TCA 90 bp ATTTTGTTCTCACCCAGACCCTTGACTTCCATCATCACTGTTCCTGTGACCTGGGACCTTCCATTTTCTTaGTGCCGTAGTGTTTGCCTC +
Preference number: 4 (lower is better)
Translates to: ILFSPRPLTSIITVPVTWDLPFS*CRSVCL
Trigger: GAGGCAAACACTACGGCATCAAGAAAATGGAAGGTC...CCAGGTCACAGGAACAGTGATGATGGAAGTCAAGGGTCTGGGTGAGAACAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR CCA 90 bp TATACGCATACATTGTTGCTGTCTTCAGACACACAAGAAGAGATTATAGATGGTGTGCTGTGGGTGCTGTaGGGCTCAGCAGGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: YTHTLLLSSDTQEEIIDGVLWVL*GSAGLS
Trigger: TGACAGCCCTGCTGAGCCCCACAGCACCCACAGCAC...ACCATCTATAATCTCTTCTTGTGTGTCTGAAGACAGCAACAATGTATGCGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR GCA 90 bp CAAGAAGAGATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACGAGTGCCAAGGATGTTaGCAGCGTGAACGTAGTGAC +
Preference number: 4 (lower is better)
Translates to: QEEIIDGCEPPCGCWELNECQGC*QRERSD
Trigger: GTCACTACGTTCACGCTGGCAACATCCTTGGCACTC...GTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATCTCTTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR TCA 90 bp TATACGCATACATTGTTGCTGTCTTCAGACACACAAGAAGAGATTATAGATGGTGCATGTCCACTAGTTTaGAGGTTCCCTCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: YTHTLLLSSDTQEEIIDGACPLV*RFPQVW
Trigger: CCAAACCTGAGGGAACCTTCAAACTAGTGGACATGC...ACCATCTATAATCTCTTCTTGTGTGTCTGAAGACAGCAACAATGTATGCGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR CAA 90 bp TGGTTGTTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACAAGGTTCCCTCAGGTTaGGCAGGAACCACGTGGACA +
Preference number: 5 (lower is better)
Translates to: WLLGIELRTSGRAVSALNKVPSG*AGTTWT
Trigger: TGTCCACGTGGTTCCTGCCAAACCTGAGGGAACCTT...GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAACAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS TCA 90 bp AACGTAGTGACCTTCCATTTTCTTGATGCCGTAGTGTTTGCCTCGTaGTTTCCCACCAAGGTTCTTAGAGCTGCCACCTGTCTTCTTGGA +
Preference number: 5 (lower is better)
Translates to: NVVTFHFLDAVVFAS*FPTKVLRAATCLLG
Trigger: TCCAAGAAGACAGGTGGCAGCTCTAAGAACCTTGGTGGGAAATCACGAGGCAAACACTACGGCATCAAGAAAATGGAAGGTCACTACGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS-3UTR CAA 90 bp CAAGAAGAGATTATAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACCTGCCACCTGTCTTCTaGGATGCATGTCTGACAGCG +
Preference number: 5 (lower is better)
Translates to: QEEIIDGCEPPCGCWELNLPPVF*DACLTA
Trigger: CGCTGTCAGACATGCATCCAAGAAGACAGGTGGCAG...GTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTATAATCTCTTCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS CAA 90 bp CCTCGTGATTTCCCACCAAGGTTCTTAGAGCTGCCACCTGTCTTCTaGGATGCATGTCTGACAGCGAGTGCTGTGGGTGCTGTGGGGCTC +
Preference number: 6 (lower is better)
Translates to: PRDFPPRFLELPPVF*DACLTASAVGAVGL
Trigger: GAGCCCCACAGCACCCACAGCACTCGCTGTCAGACATGCATCCAAGAAGACAGGTGGCAGCTCTAAGAACCTTGGTGGGAAATCACGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS CAA 72 bp TTCCCACCAAGGTTCTTAGAGCTGCCACCTGTCTTCTaGGATGCATGTCTGACAGCGAGTGCTGTGGGTGCT +
Preference number: 6 (lower is better)
Translates to: FPPRFLELPPVF*DACLTASAVGA
Trigger: AGCACCCACAGCACTCGCTGTCAGACATGCATCCAAGAAGACAGGTGGCAGCTCTAAGAACCTTGGTGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS TCA 72 bp ACCTTCCATTTTCTTGATGCCGTAGTGTTTGCCTCGTaGTTTCCCACCAAGGTTCTTAGAGCTGCCACCTGT +
Preference number: 6 (lower is better)
Translates to: TFHFLDAVVFAS*FPTKVLRAATC
Trigger: ACAGGTGGCAGCTCTAAGAACCTTGGTGGGAAATCACGAGGCAAACACTACGGCATCAAGAAAATGGAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8
CDS TCA 72 bp TGTTGCCAGCGTGAACGTAGTGACCTTCCATTTTCTTaGTGCCGTAGTGTTTGCCTCGTGATTTCCCACCAA +
Preference number: 6 (lower is better)
Translates to: CCQRERSDLPFS*CRSVCLVISHQ
Trigger: TTGGTGGGAAATCACGAGGCAAACACTACGGCATCAAGAAAATGGAAGGTCACTACGTTCACGCTGGCAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025278.8