RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRPL22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020514

Ensembl transcript IDs: ENSMUST00000020820.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAGATCTTGGGTACTTCGGGTaGGGGAGGGGGTCCTTCCAC +
Preference number: 4 (lower is better)
Translates to: FKINISYIHRGARMTCTDLGYFG*GRGSFH
Trigger: GTGGAAGGACCCCCTCCCCCACCCGAAGTACCCAAG...ATCTGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR GCA 90 bp CTTTTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAGGCCATGGTAACGGATaGGCTTCAGGCACTGGCCTC +
Preference number: 4 (lower is better)
Translates to: LFKINISYIHRGARMTCTGHGNG*ASGTGL
Trigger: GAGGCCAGTGCCTGAAGCGCATCCGTTACCATGGCC...TGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR GCA 90 bp CTTTTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAAAAACCCGCAGCGTCTaGGTTGCCCAGATCCTCAGG +
Preference number: 4 (lower is better)
Translates to: LFKINISYIHRGARMTCTKTRSV*VAQILR
Trigger: CCTGAGGATCTGGGCAACGCAGACGCTGCGGGTTTT...TGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR GCA 90 bp CTTTTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACACTTGGCGTGGTCAACTaGTGTCTTGGGTACTTCGGG +
Preference number: 4 (lower is better)
Translates to: LFKINISYIHRGARMTCTLGVVN*CLGYFG
Trigger: CCCGAAGTACCCAAGACAGCAGTTGACCACGCCAAG...TGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR TCA 90 bp CTTTTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACACCCCCTTTTTATCATTaGACTCCAGCTGCGCCAAAG +
Preference number: 4 (lower is better)
Translates to: LFKINISYIHRGARMTCTPPFYH*TPAAPK
Trigger: CTTTGGCGCAGCTGGAGTTCAATGATAAAAAGGGGG...TGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR CCA 90 bp TTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAGATGCTGAATATAGTCCTTaGCGTGGTCAACTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: FKINISYIHRGARMTCTDAEYSP*RGQLLS
Trigger: AGACAGCAGTTGACCACGCCAAGGACTATATTCAGC...ATCTGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR CCA 90 bp TTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAGATCCAAAGCCTGATCAATaGACATGCCTCGTATCATCT +
Preference number: 4 (lower is better)
Translates to: FKINISYIHRGARMTCTDPKPDQ*TCLVSS
Trigger: AGATGATACGAGGCATGTCCATTGATCAGGCTTTGG...ATCTGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR TCA 90 bp CTTTTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACATGTGTAAGTTGGATCTaGATTCCACATTATGGTCTC +
Preference number: 4 (lower is better)
Translates to: LFKINISYIHRGARMTCTCVSWI*IPHYGL
Trigger: GAGACCATAATGTGGAATTCAGATCCAACTTACACA...TGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS GCA 90 bp GGTCCGGCTGCGAAGCTGCTGAATATAGTCCTTGGCGTGGTCAACTaGTGTCTTGGGTACTTCGGGTGGGGGAGGGGGTCCTTCCACCAG +
Preference number: 5 (lower is better)
Translates to: GPAAKLLNIVLGVVN*CLGYFGWGRGSFHQ
Trigger: CTGGTGGAAGGACCCCCTCCCCCACCCGAAGTACCCAAGACAGCAGTTGACCACGCCAAGGACTATATTCAGCAGCTTCGCAGCCGGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS GCA 90 bp GAAGCACTCGTGTGGATGCACGACGGGGGTAAAACCCGCAGCGTCTaGGTTGCCCAGATCCTCAGGTTAGGTACCCTCAGTGCACCCAAC +
Preference number: 5 (lower is better)
Translates to: EALVWMHDGGKTRSV*VAQILRLGTLSAPN
Trigger: GTTGGGTGCACTGAGGGTACCTAACCTGAGGATCTGGGCAACGCAGACGCTGCGGGTTTTACCCCCGTCGTGCATCCACACGAGTGCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR CAA 90 bp CTTTTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAAGGTTCGCCAGGCAGTaGAGGTGGGTAAACAATCTT +
Preference number: 5 (lower is better)
Translates to: LFKINISYIHRGARMTCTRFARQ*RWVNNL
Trigger: AAGATTGTTTACCCACCTCAACTGCCTGGCGAACCT...TGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS-3UTR CAA 90 bp TTTAAAATAAACATAAGCTATATACACCGTGGAGCCAGGATGACCTGCACAGATGCCAGGTACCACATCTaGTCCTTGCTGTATTTTATT +
Preference number: 5 (lower is better)
Translates to: FKINISYIHRGARMTCTDARYHI*SLLYFI
Trigger: AATAAAATACAGCAAGGACAAGATGTGGTACCTGGC...ATCTGTGCAGGTCATCCTGGCTCCACGGTGTATATAGCTTATGTTTATTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS GCA 72 bp GTGTGGATGCACGACGGGGGTAAAACCCGCAGCGTCTaGGTTGCCCAGATCCTCAGGTTAGGTACCCTCAGT +
Preference number: 6 (lower is better)
Translates to: VWMHDGGKTRSV*VAQILRLGTLS
Trigger: ACTGAGGGTACCTAACCTGAGGATCTGGGCAACGCAGACGCTGCGGGTTTTACCCCCGTCGTGCATCCACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS GCA 72 bp GCGAAGCTGCTGAATATAGTCCTTGGCGTGGTCAACTaGTGTCTTGGGTACTTCGGGTGGGGGAGGGGGTCC +
Preference number: 6 (lower is better)
Translates to: AKLLNIVLGVVN*CLGYFGWGRGS
Trigger: GGACCCCCTCCCCCACCCGAAGTACCCAAGACAGCAGTTGACCACGCCAAGGACTATATTCAGCAGCTTCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS CCA 72 bp GCTGAATATAGTCCTTGGCGTGGTCAACTGCTGTCTTaGGTACTTCGGGTGGGGGAGGGGGTCCTTCCACCA +
Preference number: 6 (lower is better)
Translates to: AEYSPWRGQLLS*VLRVGEGVLPP
Trigger: TGGTGGAAGGACCCCCTCCCCCACCCGAAGTACCCAAGACAGCAGTTGACCACGCCAAGGACTATATTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS TCA 72 bp CCCTTTTTATCATTGAACTCCAGCTGCGCCAAAGCCTaGTCAATGGACATGCCTCGTATCATCTTTGCCAGG +
Preference number: 6 (lower is better)
Translates to: PFLSLNSSCAKA*SMDMPRIIFAR
Trigger: CCTGGCAAAGATGATACGAGGCATGTCCATTGATCAGGCTTTGGCGCAGCTGGAGTTCAATGATAAAAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS CAA 90 bp TATCATCTTTGCCAGGTACCACATCTTGTCCTTGCTGTATTTTATTaGTCTCCGACAATGGTAAATTTCCGCTGGTCTCCGAGGTTCGCC +
Preference number: 6 (lower is better)
Translates to: YHLCQVPHLVLAVFY*SPTMVNFRWSPRFA
Trigger: GGCGAACCTCGGAGACCAGCGGAAATTTACCATTGTCGGAGACAAATAAAATACAGCAAGGACAAGATGTGGTACCTGGCAAAGATGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS CAA 72 bp TGCCAGGTACCACATCTTGTCCTTGCTGTATTTTATTaGTCTCCGACAATGGTAAATTTCCGCTGGTCTCCG +
Preference number: 6 (lower is better)
Translates to: CQVPHLVLAVFY*SPTMVNFRWSP
Trigger: CGGAGACCAGCGGAAATTTACCATTGTCGGAGACAAATAAAATACAGCAAGGACAAGATGTGGTACCTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS CAA 72 bp CCAAAGCCTGATCAATGGACATGCCTCGTATCATCTTaGCCAGGTACCACATCTTGTCCTTGCTGTATTTTA +
Preference number: 6 (lower is better)
Translates to: PKPDQWTCLVSS*PGTTSCPCCIL
Trigger: TAAAATACAGCAAGGACAAGATGTGGTACCTGGCAAAGATGATACGAGGCATGTCCATTGATCAGGCTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2
CDS GCA 72 bp CAAAGCCTGATCAATGGACATGCCTCGTATCATCTTTaGCAGGTACCACATCTTGTCCTTGCTGTATTTTAT +
Preference number: 6 (lower is better)
Translates to: QSLINGHASYHL*QVPHLVLAVFY
Trigger: ATAAAATACAGCAAGGACAAGATGTGGTACCTGGCAAAGATGATACGAGGCATGTCCATTGATCAGGCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020820.2