Pregenerated sensors for MRPL21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024829Ensembl transcript IDs: ENSMUST00000025743.7, ENSMUST00000025745.10, ENSMUST00000141610.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCTGGCAAAGTGCACGACAGCAAAGAGCCGGCCATACTGGCCCGTaGCGATCAGCTCATTCACCCTCTTCACAACCTCCGCATGGTGTC | + |
|
Preference number: 1 (lower is better) Translates to: GWQSARQQRAGHTGP*RSAHSPSSQPPHGV Trigger: GACACCATGCGGAGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| 3UTR CCA 90 bp | TGGCCCGTGGCGATCAGCTCATTCACCCTCTTCACAACCTCCGCATaGTGTCTCGTCTCTTCAACAGGGTCCGGCAGAACCACTTCTTGC | + |
|
Preference number: 1 (lower is better) Translates to: WPVAISSFTLFTTSA*CLVSSTGSGRTTSC Trigger: GCAAGAAGTGGTTCTGCCGGACCCTGTTGAAGAGACGAGACACCATGCGGAGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| 3UTR GCA 90 bp | CTCATGTATGAGTCACGTGTTCAATCCCAATACACCTACAGGAGATaGGAGGTAGAGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCT | + |
|
Preference number: 1 (lower is better) Translates to: LMYESRVQSQYTYRR*EVETEESLQAPWSA Trigger: AGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCTCTACCTCGCATCTCCTGTAGGTGTATTGGGATTGAACACGTGACTCATACATGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR GCA 90 bp | GCATGGTGTCTCGTCTCTTCAACAGGGTCCGGCAGAACCACTTCTTaGCAGGGTGGTGAGCTCAGGGAGGTCTTAGGAACATATATTTTG | + |
|
Preference number: 1 (lower is better) Translates to: AWCLVSSTGSGRTTS*QGGELREVLGTYIL Trigger: CAAAATATATGTTCCTAAGACCTCCCTGAGCTCACCACCCTGGCAAGAAGTGGTTCTGCCGGACCCTGTTGAAGAGACGAGACACCATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| 3UTR GCA 90 bp | AGAGGACTGGAGTTCATTCCCAGTACCATGTCAGGCAGACATAACTaGTCTAGGAGATACGTAACATCTCTGTCCTCCTATGCAGACATA | + |
|
Preference number: 1 (lower is better) Translates to: RGLEFIPSTMSGRHN*SRRYVTSLSSYADI Trigger: TATGTCTGCATAGGAGGACAGAGATGTTACGTATCTCCTAGAGCAGTTATGTCTGCCTGACATGGTACTGGGAATGAACTCCAGTCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR-3UTR CCA 90 bp | TGGGTTGGGGGTGGCTCCGTGGGTAAAGCACTGCTGCACAAGCCTGGAGACCTGTCTCTGCAAGCCCCGTaGTCAGCTGGCCTGGCTTAC | + |
|
Preference number: 2 (lower is better) Translates to: WVGGGSVGKALLHKPGDLSLQAP*SAGLAY Trigger: GTAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGA...CAGGTCTCCAGGCTTGTGCAGCAGTGCTTTACCCACGGAGCCACCCCCAACCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR-3UTR GCA 90 bp | TGGGTTGGGGGTGGCTCCGTGGGTAAAGCACTGCTGCACAAGCCTGGAGACCTGTACACCTACAGGAGATaGGAGGTAGAGACAGAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: WVGGGSVGKALLHKPGDLYTYRR*EVETEE Trigger: CTCCTCTGTCTCTACCTCGCATCTCCTGTAGGTGTA...CAGGTCTCCAGGCTTGTGCAGCAGTGCTTTACCCACGGAGCCACCCCCAACCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR-3UTR GCA 90 bp | TACTGGCCCGTGGCGATCAGCTCATTCACCCTCTTCACAACCTCCGCATGGTGTGGCAGAACCACTTCTTaGCAGGGTGGTGAGCTCAGG | + |
|
Preference number: 2 (lower is better) Translates to: YWPVAISSFTLFTTSAWCGRTTS*QGGELR Trigger: CCTGAGCTCACCACCCTGGCAAGAAGTGGTTCTGCC...ACACCATGCGGAGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| 3UTR-3UTR GCA 90 bp | GAGGACTGGAGTTCATTCCCAGTACCATGTCAGGCAGACATAACTGCTCTAGGACCGTGGGTAAAGCACTaGTGCACAAGCCTGGAGACC | + |
|
Preference number: 2 (lower is better) Translates to: EDWSSFPVPCQADITALGPWVKH*CTSLET Trigger: GGTCTCCAGGCTTGTGCAGCAGTGCTTTACCCACGG...TCCTAGAGCAGTTATGTCTGCCTGACATGGTACTGGGAATGAACTCCAGTCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR CCA 72 bp | AGTGCACGACAGCAAAGAGCCGGCCATACTGGCCCGTaGCGATCAGCTCATTCACCCTCTTCACAACCTCCG | + |
|
Preference number: 3 (lower is better) Translates to: SARQQRAGHTGP*RSAHSPSSQPP Trigger: CGGAGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| 3UTR CCA 72 bp | GCGATCAGCTCATTCACCCTCTTCACAACCTCCGCATaGTGTCTCGTCTCTTCAACAGGGTCCGGCAGAACC | + |
|
Preference number: 3 (lower is better) Translates to: AISSFTLFTTSA*CLVSSTGSGRT Trigger: GGTTCTGCCGGACCCTGTTGAAGAGACGAGACACCATGCGGAGGTTGTGAAGAGGGTGAATGAGCTGATCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| 3UTR TCA 72 bp | CCGTGGGTAAAGCACTGCTGCACAAGCCTGGAGACCTaGGTTCAGATCCCCAGACTCATGTATGAGTCACGT | + |
|
Preference number: 3 (lower is better) Translates to: PWVKHCCTSLET*VQIPRLMYESR Trigger: ACGTGACTCATACATGAGTCTGGGGATCTGAACTCAGGTCTCCAGGCTTGTGCAGCAGTGCTTTACCCACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR GCA 72 bp | GAGTCACGTGTTCAATCCCAATACACCTACAGGAGATaGGAGGTAGAGACAGAGGAGTCTCTGCAAGCCCCG | + |
|
Preference number: 3 (lower is better) Translates to: ESRVQSQYTYRR*EVETEESLQAP Trigger: CGGGGCTTGCAGAGACTCCTCTGTCTCTACCTCGCATCTCCTGTAGGTGTATTGGGATTGAACACGTGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| 3UTR TCA 72 bp | CCTGGAGACCTGAGTTCAGATCCCCAGACTCATGTATaGGTCACGTGTTCAATCCCAATACACCTACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: PGDLSSDPQTHV*VTCSIPIHLQE Trigger: CTCCTGTAGGTGTATTGGGATTGAACACGTGACTCATACATGAGTCTGGGGATCTGAACTCAGGTCTCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR GCA 90 bp | AGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCTGGCCTGGCTTACGCAGTGGGGCAGAACCACTTCTTaGCAGGGTGGTGAGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RQRSLCKPRGQLAWLTQWGRTTS*QGGELR Trigger: CCTGAGCTCACCACCCTGGCAAGAAGTGGTTCTGCC...CCACTGCGTAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR CCA 90 bp | GAGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCTGGCCTGGCTTACGCAGTGCCTTCCATTGGTGGCTaGCAAAGTGCACGACAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ETEESLQAPWSAGLAYAVPSIGG*QSARQQ Trigger: TTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGG...CACTGCGTAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR TCA 90 bp | AGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCTGGCCTGGCTTACGCAGTGGAAGCGCTCTGTGAATTaGACCTTCGAGAAGCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: RQRSLCKPRGQLAWLTQWKRSVN*TFEKQT Trigger: GGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTT...CCACTGCGTAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR TCA 90 bp | CGAGGTAGAGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCTGGCCTGGCTTAAGTAGGCCCGACTTCTaGGAATTGCTCTCTTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RGRDRGVSASPVVSWPGLSRPDF*ELLSLA Trigger: TGCCAAAGAGAGCAATTCTCAGAAGTCGGGCCTACT...TAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCTCTACCTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR GCA 90 bp | TGCTTTGTAGCCCAACCTAGCCTGGAACTTGTGATCCTCCTGCCTCAGCTTCCTGGCAGAACCACTTCTTaGCAGGGTGGTGAGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: CFVAQPSLELVILLPQLPGRTTS*QGGELR Trigger: CCTGAGCTCACCACCCTGGCAAGAAGTGGTTCTGCC...AGGAAGCTGAGGCAGGAGGATCACAAGTTCCAGGCTAGGTTGGGCTACAAAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR TCA 90 bp | ATTCACCCTCTTCACAACCTCCGCATGGTGTCTCGTCTCTTCAACAGGGTCCGGAAGCGCTCTGTGAATTaGACCTTCGAGAAGCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: IHPLHNLRMVSRLFNRVRKRSVN*TFEKQT Trigger: GGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTT...CCGGACCCTGTTGAAGAGACGAGACACCATGCGGAGGTTGTGAAGAGGGTGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| CDS-3UTR TCA 90 bp | GAGGACTGGAGTTCATTCCCAGTACCATGTCAGGCAGACATAACTGCTCTAGGATTCTTGCCAGGGTGGTaGGCTCAGGGAGGTCTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: EDWSSFPVPCQADITALGFLPGW*AQGGLR Trigger: CCTAAGACCTCCCTGAGCTCACCACCCTGGCAAGAA...TCCTAGAGCAGTTATGTCTGCCTGACATGGTACTGGGAATGAACTCCAGTCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR TCA 90 bp | TCCTCCTGCCTCAGCTTCCTGAGTACAGACGTGAATTTATTAGACATTTCAGAATTCTTGCCAGGGTGGTaGGCTCAGGGAGGTCTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SSCLSFLSTDVNLLDISEFLPGW*AQGGLR Trigger: CCTAAGACCTCCCTGAGCTCACCACCCTGGCAAGAA...TTCTGAAATGTCTAATAAATTCACGTCTGTACTCAGGAAGCTGAGGCAGGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR TCA 90 bp | TGCTTTGTAGCCCAACCTAGCCTGGAACTTGTGATCCTCCTGCCTCAGCTTCCTTCCTCTCTCCACACTTaGTATCCAACTCATTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: CFVAQPSLELVILLPQLPSSLHT*YPTHFQ Trigger: TTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGA...AGGAAGCTGAGGCAGGAGGATCACAAGTTCCAGGCTAGGTTGGGCTACAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR TCA 90 bp | GTGATCCTCCTGCCTCAGCTTCCTGAGTACAGACGTGAATTTATTAGACATTTCAAGCGCTCTGTGAATTaGACCTTCGAGAAGCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: VILLPQLPEYRREFIRHFKRSVN*TFEKQT Trigger: GGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTT...GAAATGTCTAATAAATTCACGTCTGTACTCAGGAAGCTGAGGCAGGAGGATCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR CCA 90 bp | TCCTCCTGCCTCAGCTTCCTGAGTACAGACGTGAATTTATTAGACATTTCAGAACCTTCCATTGGTGGCTaGCAAAGTGCACGACAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: SSCLSFLSTDVNLLDISEPSIGG*QSARQQ Trigger: TTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGG...TTCTGAAATGTCTAATAAATTCACGTCTGTACTCAGGAAGCTGAGGCAGGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR TCA 90 bp | GAGGACTGGAGTTCATTCCCAGTACCATGTCAGGCAGACATAACTGCTCTAGGAGTTGATTTTGGGCCATaGTTCTGTCTTTTCAATGAC | + |
|
Preference number: 4 (lower is better) Translates to: EDWSSFPVPCQADITALGVDFGP*FCLFND Trigger: GTCATTGAAAAGACAGAATCATGGCCCAAAATCAAC...TCCTAGAGCAGTTATGTCTGCCTGACATGGTACTGGGAATGAACTCCAGTCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR TCA 90 bp | GTGATCCTCCTGCCTCAGCTTCCTGAGTACAGACGTGAATTTATTAGACATTTCATGCGGAGGATGGTCTaGGGGTTCACAATGATTTTT | + |
|
Preference number: 4 (lower is better) Translates to: VILLPQLPEYRREFIRHFMRRMV*GFTMIF Trigger: AAAAATCATTGTGAACCCTCAGACCATCCTCCGCAT...GAAATGTCTAATAAATTCACGTCTGTACTCAGGAAGCTGAGGCAGGAGGATCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR CCA 90 bp | AGACCTGAGTTCAGATCCCCAGACTCATGTATGAGTCACGTGTTCAATCCCAATGAGAATTGCTCTCTTTaGCATGCACTGAGGCATAAA | + |
|
Preference number: 4 (lower is better) Translates to: RPEFRSPDSCMSHVFNPNENCSL*HALRHK Trigger: TTTATGCCTCAGTGCATGCCAAAGAGAGCAATTCTC...ATTGGGATTGAACACGTGACTCATACATGAGTCTGGGGATCTGAACTCAGGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR TCA 90 bp | CCTGAGTTCAGATCCCCAGACTCATGTATGAGTCACGTGTTCAATCCCAATACATCCTCTCTCCACACTTaGTATCCAACTCATTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: PEFRSPDSCMSHVFNPNTSSLHT*YPTHFQ Trigger: TTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGA...TGTATTGGGATTGAACACGTGACTCATACATGAGTCTGGGGATCTGAACTCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR TCA 90 bp | GTGATCCTCCTGCCTCAGCTTCCTGAGTACAGACGTGAATTTATTAGACATTTCGTTGATTTTGGGCCATaGTTCTGTCTTTTCAATGAC | + |
|
Preference number: 4 (lower is better) Translates to: VILLPQLPEYRREFIRHFVDFGP*FCLFND Trigger: GTCATTGAAAAGACAGAATCATGGCCCAAAATCAAC...GAAATGTCTAATAAATTCACGTCTGTACTCAGGAAGCTGAGGCAGGAGGATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR CAA 90 bp | AGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCTGGCCTGGCTTACGCAGTGGGAAGCGCTCTGTGAATaGAACCTTCGAGAAGCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: RQRSLCKPRGQLAWLTQWEALCE*NLREAD Trigger: GTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTC...CCACTGCGTAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR CAA 90 bp | CCTTCCATTGGTGGCTGGCAAAGTGCACGACAGCAAAGAGCCGGCCATACTGGCGAAGCGCTCTGTGAATaGAACCTTCGAGAAGCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: PSIGGWQSARQQRAGHTGEALCE*NLREAD Trigger: GTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTC...GCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141610.2 |
||
| CDS GCA 90 bp | GCATGGTGTCTCGTCTCTTCAACAGGGTCCGGCAGAACCACTTCTTaGCAGGGTGGTGAGCTCAGGGAGGTCTTAGGAACATATCCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: AWCLVSSTGSGRTTS*QGGELREVLGTYPC Trigger: ACAAGGATATGTTCCTAAGACCTCCCTGAGCTCACCACCCTGGCAAGAAGTGGTTCTGCCGGACCCTGTTGAAGAGACGAGACACCATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025743.7 ENSMUST00000025745.10 |
||
| CDS-3UTR CAA 90 bp | AGACAGAGGAGTCTCTGCAAGCCCCGTGGTCAGCTGGCCTGGCTTACGCAGTGGATCCTCTCTCCACACTaGATATCCAACTCATTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: RQRSLCKPRGQLAWLTQWILSPH*ISNSFS Trigger: TGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGAT...CCACTGCGTAAGCCAGGCCAGCTGACCACGGGGCTTGCAGAGACTCCTCTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025745.10 |
||
| CDS-3UTR CAA 90 bp | TCCTCCTGCCTCAGCTTCCTGAGTACAGACGTGAATTTATTAGACATTTCAGAAGAAGCGCTCTGTGAATaGAACCTTCGAGAAGCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: SSCLSFLSTDVNLLDISEEALCE*NLREAD Trigger: GTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTC...TTCTGAAATGTCTAATAAATTCACGTCTGTACTCAGGAAGCTGAGGCAGGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS-3UTR CAA 90 bp | TGTCAGACAAGGTCTTGCTTTGTAGCCCAACCTAGCCTGGAACTTGTGATCCTCATCCTCTCTCCACACTaGATATCCAACTCATTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: CQTRSCFVAQPSLELVILILSPH*ISNSFS Trigger: TGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGAT...GAGGATCACAAGTTCCAGGCTAGGTTGGGCTACAAAGCAAGACCTTGTCTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025743.7 |
||
| CDS CAA 90 bp | GAGGTCTTAGGAACATATCCTTGTGGATATGAAGCGCTCTGTGAATaGAACCTTCGAGAAGCAGACCAGAGGGAGGCTGATCCGGATCCC | + |
|
Preference number: 6 (lower is better) Translates to: EVLGTYPCGYEALCE*NLREADQREADPDP Trigger: GGGATCCGGATCAGCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGGATATGTTCCTAAGACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025743.7 ENSMUST00000025745.10 |
||
| CDS TCA 72 bp | GAACATATCCTTGTGGATATGAAGCGCTCTGTGAATTaGACCTTCGAGAAGCAGACCAGAGGGAGGCTGATC | + |
|
Preference number: 6 (lower is better) Translates to: EHILVDMKRSVN*TFEKQTRGRLI Trigger: GATCAGCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGGATATGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025743.7 ENSMUST00000025745.10 |
||