Pregenerated sensors for MRPL20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029066Ensembl transcript IDs: ENSMUST00000030942.13, ENSMUST00000130188.2, ENSMUST00000137487.9
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTACCTGTAAGCTTGCAGTGCACTTCAGTTTTCAATCTGTGGTGTaGTTTTGGGTCATTTCTGCTCTCTTAAATAATCCTGATAAACTC | + |
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Preference number: 1 (lower is better) Translates to: TTCKLAVHFSFQSVV*FWVISALLNNPDKL Trigger: GAGTTTATCAGGATTATTTAAGAGAGCAGAAATGACCCAAAAGCACACCACAGATTGAAAACTGAAGTGCACTGCAAGCTTACAGGTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR-3UTR TCA 90 bp | ACTACCTGTAAGCTTGCAGTGCACTTCAGTTTTCAATCTGTGGTGTGCTTTTGGCAATGGTTCCCTCTCTaGGGTGAGTACCTTTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: TTCKLAVHFSFQSVVCFWQWFPL*GEYLFV Trigger: AACAAAAAGGTACTCACCTCAGAGAGGGAACCATTG...CCAAAAGCACACCACAGATTGAAAACTGAAGTGCACTGCAAGCTTACAGGTAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR-3UTR TCA 90 bp | ACATGGTTTATTAGGTACCCTCCCCAAGCATGTCATGTAAGAACTATTAAGGGAGTTCCCTCTCTGAGGTaGGTACCTTTTTGTTCACAT | + |
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Preference number: 2 (lower is better) Translates to: TWFIRYPPQACHVRTIKGVPSLR*VPFCSH Trigger: ATGTGAACAAAAAGGTACTCACCTCAGAGAGGGAAC...TCCCTTAATAGTTCTTACATGACATGCTTGGGGAGGGTACCTAATAAACCATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR-3UTR GCA 90 bp | CAAGCATGTCATGTAAGAACTATTAAGGGACTCTCAAACAAGCCAAGGTGCTTGCCTGTAAGCTTGCAGTaGACTTCAGTTTTCAATCTG | + |
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Preference number: 2 (lower is better) Translates to: QACHVRTIKGLSNKPRCLPVSLQ*TSVFNL Trigger: CAGATTGAAAACTGAAGTGCACTGCAAGCTTACAGG...CAAGCACCTTGGCTTGTTTGAGAGTCCCTTAATAGTTCTTACATGACATGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR GCA 72 bp | GTAAGAACTATTAAGGGACTCTCAAACAAGCCAAGGTaGTTGGAAGAGATACTCTTGAACCCACGGGACTAC | + |
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Preference number: 3 (lower is better) Translates to: VRTIKGLSNKPR*LEEILLNPRDY Trigger: GTAGTCCCGTGGGTTCAAGAGTATCTCTTCCAAGCACCTTGGCTTGTTTGAGAGTCCCTTAATAGTTCTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR TCA 72 bp | AGTATCCTTACTTTGGTCAGTCAATGGTTCCCTCTCTaGGGTGAGTACCTTTTTGTTCACATCTCAGGAATA | + |
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Preference number: 3 (lower is better) Translates to: SILTLVSQWFPL*GEYLFVHISGI Trigger: TATTCCTGAGATGTGAACAAAAAGGTACTCACCTCAGAGAGGGAACCATTGACTGACCAAAGTAAGGATACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR GCA 72 bp | AAGCTTGCAGTGCACTTCAGTTTTCAATCTGTGGTGTaGTTTTGGGTCATTTCTGCTCTCTTAAATAATCCT | + |
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Preference number: 3 (lower is better) Translates to: KLAVHFSFQSVV*FWVISALLNNP Trigger: AGGATTATTTAAGAGAGCAGAAATGACCCAAAAGCACACCACAGATTGAAAACTGAAGTGCACTGCAAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR CCA 72 bp | GCAGTGCACTTCAGTTTTCAATCTGTGGTGTGCTTTTaGGTCATTTCTGCTCTCTTAAATAATCCTGATAAA | + |
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Preference number: 3 (lower is better) Translates to: AVHFSFQSVVCF*VISALLNNPDK Trigger: TTTATCAGGATTATTTAAGAGAGCAGAAATGACCCAAAAGCACACCACAGATTGAAAACTGAAGTGCACTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR TCA 90 bp | ACACGCAAACAAACAAAAACCCCCTCAAGATGGGCAGTGGTGGCGCATGCCTTTCTTCCCCGAAAATGCTaGGCGTGTTTCAGCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: TRKQTKTPSRWAVVAHAFLPRKC*ACFSTS Trigger: GGAGGTGCTGAAACACGCTCAGCATTTTCGGGGAAG...AAAGGCATGCGCCACCACTGCCCATCTTGAGGGGGTTTTTGTTTGTTTGCGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000130188.2 |
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| CDS-3UTR TCA 90 bp | CAACACTGCAAAGGCTTTATTTATACAATCTTTACAGGACAGTTTGGGGCCGTGCTTCCCCGAAAATGCTaGGCGTGTTTCAGCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: QHCKGFIYTIFTGQFGAVLPRKC*ACFSTS Trigger: GGAGGTGCTGAAACACGCTCAGCATTTTCGGGGAAG...CACGGCCCCAAACTGTCCTGTAAAGATTGTATAAATAAAGCCTTTGCAGTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030942.13 |
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| 3UTR CAA 72 bp | AGAGATACTCTTGAACCCACGGGACTACCTGTAAGCTaGCAGTGCACTTCAGTTTTCAATCTGTGGTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: RDTLEPTGLPVS*QCTSVFNLWCA Trigger: AGCACACCACAGATTGAAAACTGAAGTGCACTGCAAGCTTACAGGTAGTCCCGTGGGTTCAAGAGTATCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| 3UTR CAA 72 bp | AGAACTATTAAGGGACTCTCAAACAAGCCAAGGTGCTaGGAAGAGATACTCTTGAACCCACGGGACTACCTG | + |
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Preference number: 4 (lower is better) Translates to: RTIKGLSNKPRC*EEILLNPRDYL Trigger: CAGGTAGTCCCGTGGGTTCAAGAGTATCTCTTCCAAGCACCTTGGCTTGTTTGAGAGTCCCTTAATAGTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR TCA 90 bp | AGTACCTTTTTGTTCACATCTCAGGAATACTGTCTTAGTGGTGACAGTCCTTTTCTTCCCCGAAAATGCTaGGCGTGTTTCAGCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: STFLFTSQEYCLSGDSPFLPRKC*ACFSTS Trigger: GGAGGTGCTGAAACACGCTCAGCATTTTCGGGGAAG...AAAAGGACTGTCACCACTAAGACAGTATTCCTGAGATGTGAACAAAAAGGTACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR CCA 90 bp | GTCAATGGTTCCCTCTCTGAGGTGAGTACCTTTTTGTTCACATCTCAGGAATACGGTACTGCACCACTCTaGAAAAGATACCTTCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: VNGSLSEVSTFLFTSQEYGTAPL*KRYLQA Trigger: AGCCTGAAGGTATCTTTTCCAGAGTGGTGCAGTACC...GTATTCCTGAGATGTGAACAAAAAGGTACTCACCTCAGAGAGGGAACCATTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR CCA 90 bp | CAACACTGCAAAGGCTTTATTTATACAATCTTTACAGGACAGTTTGGGGCCGTGGGTACTGCACCACTCTaGAAAAGATACCTTCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: QHCKGFIYTIFTGQFGAVGTAPL*KRYLQA Trigger: AGCCTGAAGGTATCTTTTCCAGAGTGGTGCAGTACC...CACGGCCCCAAACTGTCCTGTAAAGATTGTATAAATAAAGCCTTTGCAGTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030942.13 |
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| CDS-3UTR GCA 90 bp | CAACACTGCAAAGGCTTTATTTATACAATCTTTACAGGACAGTTTGGGGCCGTGCCTCCGCTTAGCCAATaGAGCCAAAGATTTAAACGT | + |
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Preference number: 4 (lower is better) Translates to: QHCKGFIYTIFTGQFGAVPPLSQ*SQRFKR Trigger: ACGTTTAAATCTTTGGCTGCATTGGCTAAGCGGAGG...CACGGCCCCAAACTGTCCTGTAAAGATTGTATAAATAAAGCCTTTGCAGTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030942.13 |
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| CDS-3UTR CCA 90 bp | CAACACTGCAAAGGCTTTATTTATACAATCTTTACAGGACAGTTTGGGGCCGTGCTGTTGAGCTCCACCTaGCACTTAATTAAGTTGACA | + |
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Preference number: 4 (lower is better) Translates to: QHCKGFIYTIFTGQFGAVLLSST*HLIKLT Trigger: TGTCAACTTAATTAAGTGCCAGGTGGAGCTCAACAG...CACGGCCCCAAACTGTCCTGTAAAGATTGTATAAATAAAGCCTTTGCAGTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030942.13 |
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| CDS-3UTR CCA 90 bp | CAAGCATGTCATGTAAGAACTATTAAGGGACTCTCAAACAAGCCAAGGTGCTTGCTGTTGAGCTCCACCTaGCACTTAATTAAGTTGACA | + |
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Preference number: 4 (lower is better) Translates to: QACHVRTIKGLSNKPRCLLLSST*HLIKLT Trigger: TGTCAACTTAATTAAGTGCCAGGTGGAGCTCAACAG...CAAGCACCTTGGCTTGTTTGAGAGTCCCTTAATAGTTCTTACATGACATGCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR GCA 90 bp | AGTACCTTTTTGTTCACATCTCAGGAATACTGTCTTAGTGGTGACAGTCCTTTTCCTCCGCTTAGCCAATaGAGCCAAAGATTTAAACGT | + |
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Preference number: 4 (lower is better) Translates to: STFLFTSQEYCLSGDSPFPPLSQ*SQRFKR Trigger: ACGTTTAAATCTTTGGCTGCATTGGCTAAGCGGAGG...AAAAGGACTGTCACCACTAAGACAGTATTCCTGAGATGTGAACAAAAAGGTACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR CAA 90 bp | AGGTGGATTTCTGAGTTCGAGGCCTGCCTGGTCTACAGAGTGAGTTCCAGGACAAAACCCTTAATTAAGTaGACAATGAATGCTGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: RWISEFEACLVYRVSSRTKPLIK*TMNAGY Trigger: GTACCCAGCATTCATTGTCAACTTAATTAAGGGTTT...TGTCCTGGAACTCACTCTGTAGACCAGGCAGGCCTCGAACTCAGAAATCCACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130188.2 |
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| CDS-3UTR CAA 90 bp | GGTTCCCTCTCTGAGGTGAGTACCTTTTTGTTCACATCTCAGGAATACTGTCTTTGGCACTTAATTAAGTaGACAATGAATGCTGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: GSLSEVSTFLFTSQEYCLWHLIK*TMNAGY Trigger: GTACCCAGCATTCATTGTCAACTTAATTAAGTGCCA...AAGACAGTATTCCTGAGATGTGAACAAAAAGGTACTCACCTCAGAGAGGGAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137487.9 |
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| CDS-3UTR CAA 90 bp | CAACACTGCAAAGGCTTTATTTATACAATCTTTACAGGACAGTTTGGGGCCGTGTGGCACTTAATTAAGTaGACAATGAATGCTGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: QHCKGFIYTIFTGQFGAVWHLIK*TMNAGY Trigger: GTACCCAGCATTCATTGTCAACTTAATTAAGTGCCA...CACGGCCCCAAACTGTCCTGTAAAGATTGTATAAATAAAGCCTTTGCAGTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030942.13 |
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