Pregenerated sensors for MRPL18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057388Ensembl transcript IDs: ENSMUST00000079121.4
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGTTAACAGAGGGTTCCGGTTGGTaGACTCCGGGGCCACCGCTT | + |
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Preference number: 4 (lower is better) Translates to: PLVAVDGSFILHCQQQLTEGSGW*TPGPPL Trigger: AAGCGGTGGCCCCGGAGTTCACCAACCGGAACCCTC...TGTTAACTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR CCA 90 bp | AGTTTTCAGTCACATTATTGCTCTGAAGCTTTCAGTCTGGTTCTCCTTCCAAATCGGCCGGCACGGAACTaGTTGAGAGGGCTGCGAACC | + |
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Preference number: 4 (lower is better) Translates to: SFQSHYCSEAFSLVLLPNRPARN*LRGLRT Trigger: GGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCG...ATTTGGAAGGAGAACCAGACTGAAAGCTTCAGAGCAATAATGTGACTGAAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR TCA 90 bp | AGTTTTCAGTCACATTATTGCTCTGAAGCTTTCAGTCTGGTTCTCCTTCCAAATCGGCACGGAACTGGTTaGGAGGGCTGCGAACCCACA | + |
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Preference number: 4 (lower is better) Translates to: SFQSHYCSEAFSLVLLPNRHGTG*EGCEPT Trigger: TGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCG...ATTTGGAAGGAGAACCAGACTGAAAGCTTCAGAGCAATAATGTGACTGAAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR GCA 90 bp | TGCTTTCCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGCCAGCACTCGCCCAATaGTCTCACAAGCCACCACGT | + |
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Preference number: 4 (lower is better) Translates to: CFPLVAVDGSFILHCQQQPALAQ*SHKPPR Trigger: ACGTGGTGGCTTGTGAGAGCATTGGGCGAGTGCTGG...CTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGGAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR TCA 90 bp | AGTTTTCAGTCACATTATTGCTCTGAAGCTTTCAGTCTGGTTCTCCTTCCAAATCAGTTTCCTGCAAACTaGCAGACATTTCCAGAACCG | + |
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Preference number: 4 (lower is better) Translates to: SFQSHYCSEAFSLVLLPNQFPAN*QTFPEP Trigger: CGGTTCTGGAAATGTCTGTCAGTTTGCAGGAAACTG...ATTTGGAAGGAGAACCAGACTGAAAGCTTCAGAGCAATAATGTGACTGAAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR GCA 90 bp | TGCTTTCCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGACCTGGCCGTTAAGATaGTCAACAAATGCTTCTACG | + |
|
Preference number: 4 (lower is better) Translates to: CFPLVAVDGSFILHCQQQTWPLR*STNAST Trigger: CGTAGAAGCATTTGTTGAGCATCTTAACGGCCAGGT...CTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGGAAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR GCA 90 bp | CCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGTTAACACACACTCCAGTTTCCTaGAAACTGACAGACATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PLVAVDGSFILHCQQQLTHTPVS*KLTDIS Trigger: GGAAATGTCTGTCAGTTTGCAGGAAACTGGAGTGTG...TGTTAACTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR GCA 90 bp | TGCTTTCCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGAAGATGCTCAACAAATaGTTCTACGTGATGCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: CFPLVAVDGSFILHCQQQKMLNK*FYVMLS Trigger: ACTCAGCATCACGTAGAAGCATTTGTTGAGCATCTT...CTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGGAAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR CCA 90 bp | TGCTTTCCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGCGCCACTTTCTGTCATaGCATTTTGTAAACGTTTTA | + |
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Preference number: 4 (lower is better) Translates to: CFPLVAVDGSFILHCQQQRHFLS*HFVNVL Trigger: TAAAACGTTTACAAAATGCCATGACAGAAAGTGGCG...CTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGGAAAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR CCA 90 bp | CCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGTTAACAAAGCCACCACGTTTCTaGTACTATAAAGGTGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: PLVAVDGSFILHCQQQLTKPPRF*YYKGVF Trigger: AAAAACACCTTTATAGTACCAGAAACGTGGTGGCTT...TGTTAACTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS GCA 90 bp | AACTCCGGGGCCACCGCTTCGTTTTCCTTACTCTCCACGTCGGGCTaGACGGCCGGCACGGAACTGGTTGAGAGGGCTGCGAACCCACAC | + |
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Preference number: 5 (lower is better) Translates to: NSGATASFSLLSTSG*TAGTELVERAANPH Trigger: GTGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAGAGTAAGGAAAACGAAGCGGTGGCCCCGGAGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS CCA 90 bp | CGTTTTCCTTACTCTCCACGTCGGGCTGCACGGCCGGCACGGAACTaGTTGAGAGGGCTGCGAACCCACACTCCAGTTTCCTGCAAACTG | + |
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Preference number: 5 (lower is better) Translates to: RFPYSPRRAARPARN*LRGLRTHTPVSCKL Trigger: CAGTTTGCAGGAAACTGGAGTGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAGAGTAAGGAAAACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS-3UTR CAA 90 bp | TGCTTTCCTTTGGTGGCTGTAGATGGTAGTTTTATATTACACTGCCAACAACAGCCGGCACGGAACTGGTaGAGAGGGCTGCGAACCCAC | + |
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Preference number: 5 (lower is better) Translates to: CFPLVAVDGSFILHCQQQPARNW*RGLRTH Trigger: GTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGG...CTGTTGTTGGCAGTGTAATATAAAACTACCATCTACAGCCACCAAAGGAAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS CCA 90 bp | CATAGATTCTTCGAGGCTCCCGAAGCATCACGCCACTTTCTGTCATaGCATTTTGTAAACGTTTTATCGAGTCTGAGGACGCCTCCCACG | + |
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Preference number: 5 (lower is better) Translates to: HRFFEAPEASRHFLS*HFVNVLSSLRTPPT Trigger: CGTGGGAGGCGTCCTCAGACTCGATAAAACGTTTACAAAATGCCATGACAGAAAGTGGCGTGATGCTTCGGGAGCCTCGAAGAATCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS TCA 72 bp | CTCCACGTCGGGCTGCACGGCCGGCACGGAACTGGTTaGGAGGGCTGCGAACCCACACTCCAGTTTCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: LHVGLHGRHGTG*EGCEPTLQFPA Trigger: TGCAGGAAACTGGAGTGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS CAA 72 bp | TCTCCACGTCGGGCTGCACGGCCGGCACGGAACTGGTaGAGAGGGCTGCGAACCCACACTCCAGTTTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SPRRAARPARNW*RGLRTHTPVSC Trigger: GCAGGAAACTGGAGTGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS CCA 72 bp | TACTCTCCACGTCGGGCTGCACGGCCGGCACGGAACTaGTTGAGAGGGCTGCGAACCCACACTCCAGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: YSPRRAARPARN*LRGLRTHTPVS Trigger: GGAAACTGGAGTGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAGAGTA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS CAA 90 bp | TTTCCTTACTCTCCACGTCGGGCTGCACGGCCGGCACGGAACTGGTaGAGAGGGCTGCGAACCCACACTCCAGTTTCCTGCAAACTGACA | + |
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Preference number: 6 (lower is better) Translates to: FPYSPRRAARPARNW*RGLRTHTPVSCKLT Trigger: TGTCAGTTTGCAGGAAACTGGAGTGTGGGTTCGCAGCCCTCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAGAGTAAGGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS TCA 72 bp | GAGGGCTGCGAACCCACACTCCAGTTTCCTGCAAACTaGCAGACATTTCCAGAACCGCGGCCGAAGCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: EGCEPTLQFPAN*QTFPEPRPKRH Trigger: ATGGCGCTTCGGCCGCGGTTCTGGAAATGTCTGTCAGTTTGCAGGAAACTGGAGTGTGGGTTCGCAGCCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS GCA 72 bp | CTGCTTCTAAGCACCGCTGTGCCAGCACTCGCCCAATaGTCTCACAAGCCACCACGTTTCTGGTACTATAAA | + |
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Preference number: 6 (lower is better) Translates to: LLLSTAVPALAQ*SHKPPRFWYYK Trigger: TTTATAGTACCAGAAACGTGGTGGCTTGTGAGAGCATTGGGCGAGTGCTGGCACAGCGGTGCTTAGAAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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| CDS CCA 72 bp | TTCGAGGCTCCCGAAGCATCACGCCACTTTCTGTCATaGCATTTTGTAAACGTTTTATCGAGTCTGAGGACG | + |
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Preference number: 6 (lower is better) Translates to: FEAPEASRHFLS*HFVNVLSSLRT Trigger: CGTCCTCAGACTCGATAAAACGTTTACAAAATGCCATGACAGAAAGTGGCGTGATGCTTCGGGAGCCTCGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079121.4 |
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