Pregenerated sensors for MRPL13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022370Ensembl transcript IDs: ENSMUST00000164542.8, ENSMUST00000165356.2, ENSMUST00000172387.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCACCCCACCCTCACCTCACACGGTCACAAGGCTTACAGACCTTTaGAGTCTGAGGTTAAGAGCTGCTGAGTTGCAAAGGGGACCTGAC | + |
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Preference number: 1 (lower is better) Translates to: VTPPSPHTVTRLTDL*SLRLRAAELQRGPD Trigger: GTCAGGTCCCCTTTGCAACTCAGCAGCTCTTAACCTCAGACTCCAAAGGTCTGTAAGCCTTGTGACCGTGTGAGGTGAGGGTGGGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| 3UTR CCA 90 bp | TTCCATTCTCCTACATCCGAAAATCATCAGGTGGAGTCCACACTCTaGGGAAAGCCTCTATTTCTTCTTGGGTGTACTCGTCCAGCCGTT | + |
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Preference number: 1 (lower is better) Translates to: FHSPTSENHQVESTL*GKPLFLLGCTRPAV Trigger: AACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCACCTGATGATTTTCGGATGTAGGAGAATGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR TCA 90 bp | TCTTCTTGGGTGTACTCGTCCAGCCGTTTAGGCACTCTCCGTGGCTaGGGAAGCTCTTCCACTAAATTCTTAAGAATATCTTCCGGAATA | + |
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Preference number: 1 (lower is better) Translates to: SSWVYSSSRLGTLRG*GSSSTKFLRISSGI Trigger: TATTCCGGAAGATATTCTTAAGAATTTAGTGGAAGAGCTTCCTCAGCCACGGAGAGTGCCTAAACGGCTGGACGAGTACACCCAAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR GCA 90 bp | AAATTCTTAAGAATATCTTCCGGAATATCCTCGTCTGGGAAAAGATaGAGCCTTTGCATCATTGTCCTTCTGTGCAGGTTTTTGGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: KFLRISSGISSSGKR*SLCIIVLLCRFLGS Trigger: GCTGCCCAAAAACCTGCACAGAAGGACAATGATGCAAAGGCTGCATCTTTTCCCAGACGAGGATATTCCGGAAGATATTCTTAAGAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR CAA 90 bp | ATCATCAGGTGGAGTCCACACTCTGGGGAAAGCCTCTATTTCTTCTaGGGTGTACTCGTCCAGCCGTTTAGGCACTCTCCGTGGCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: IIRWSPHSGESLYFF*GVLVQPFRHSPWLR Trigger: CCTCAGCCACGGAGAGTGCCTAAACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCACCTGATGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR-3UTR GCA 90 bp | TTTAGGATGATGACAGTGGAGTGCCACTACAACAGTCACCCCACCCTCACCTCATCTCAGAGTTCAGTTTaGAAACAGAAGAGTGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: FRMMTVECHYNSHPTLTSSQSSV*KQKSGK Trigger: CTTTCCACTCTTCTGTTTGCAAACTGAACTCTGAGA...TGAGGTGAGGGTGGGGTGACTGTTGTAGTGGCACTCCACTGTCATCATCCTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| 3UTR-3UTR CCA 90 bp | GTCACAAGGCTTACAGACCTTTGGAGTCTGAGGTTAAGAGCTGCTGAGTTGCAATTGCAAACAGAAGAGTaGAAAGACCCAAGGGAATGC | + |
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Preference number: 2 (lower is better) Translates to: VTRLTDLWSLRLRAAELQLQTEE*KDPREC Trigger: GCATTCCCTTGGGTCTTTCCACTCTTCTGTTTGCAA...TTGCAACTCAGCAGCTCTTAACCTCAGACTCCAAAGGTCTGTAAGCCTTGTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| 3UTR-3UTR GCA 90 bp | AATCATCAGGTGGAGTCCACACTCTGGGGAAAGCCTCTATTTCTTCTTGGGTGTAAAAGATGCAGCCTTTaGATCATTGTCCTTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: NHQVESTLWGKPLFLLGCKRCSL*IIVLLC Trigger: GCACAGAAGGACAATGATGCAAAGGCTGCATCTTTT...ACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCACCTGATGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR CCA 72 bp | GGAGTCCACACTCTGGGGAAAGCCTCTATTTCTTCTTaGGTGTACTCGTCCAGCCGTTTAGGCACTCTCCGT | + |
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Preference number: 3 (lower is better) Translates to: GVHTLGKASISS*VYSSSRLGTLR Trigger: ACGGAGAGTGCCTAAACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR TCA 72 bp | CTTCTACTGCACTTTCCTGCTGAGGCTTGGCCTTCTTaGGTGTTCCCCACAGGGAGTTCCCATGGTTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: LLLHFPAEAWPS*VFPTGSSHGFS Trigger: AGAGAAACCATGGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAAAGTGCAGTAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| 3UTR-3UTR CAA 90 bp | GGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCATGGTTTCTCTCTGCCTTGGGGAAAAGATGCAGCCTTaGCATCATTGTCCTTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: GLLECSPQGVPMVSLCLGEKMQP*HHCPSV Trigger: CACAGAAGGACAATGATGCAAAGGCTGCATCTTTTC...CCCAAGGCAGAGAGAAACCATGGGAACTCCCTGTGGGGAACACTCAAGAAGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR GCA 72 bp | TCCGGAATATCCTCGTCTGGGAAAAGATGCAGCCTTTaGATCATTGTCCTTCTGTGCAGGTTTTTGGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: SGISSSGKRCSL*IIVLLCRFLGS Trigger: GCTGCCCAAAAACCTGCACAGAAGGACAATGATGCAAAGGCTGCATCTTTTCCCAGACGAGGATATTCCGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR CCA 72 bp | CCTACATCCGAAAATCATCAGGTGGAGTCCACACTCTaGGGAAAGCCTCTATTTCTTCTTGGGTGTACTCGT | + |
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Preference number: 3 (lower is better) Translates to: PTSENHQVESTL*GKPLFLLGCTR Trigger: ACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCACCTGATGATTTTCGGATGTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR TCA 72 bp | GTGTACTCGTCCAGCCGTTTAGGCACTCTCCGTGGCTaGGGAAGCTCTTCCACTAAATTCTTAAGAATATCT | + |
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Preference number: 3 (lower is better) Translates to: VYSSSRLGTLRG*GSSSTKFLRIS Trigger: AGATATTCTTAAGAATTTAGTGGAAGAGCTTCCTCAGCCACGGAGAGTGCCTAAACGGCTGGACGAGTACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR-3UTR CAA 90 bp | ACGGTCACAAGGCTTACAGACCTTTGGAGTCTGAGGTTAAGAGCTGCTGAGTTGTTCTCAGAGTTCAGTTaGCAAACAGAAGAGTGGAAA | + |
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Preference number: 3 (lower is better) Translates to: TVTRLTDLWSLRLRAAELFSEFS*QTEEWK Trigger: TTTCCACTCTTCTGTTTGCAAACTGAACTCTGAGAA...CAACTCAGCAGCTCTTAACCTCAGACTCCAAAGGTCTGTAAGCCTTGTGACCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGCTGTAATGTTCTATCATTTCCATTCTCCTACATCCGAAAATCATCAGGTGAGCCTCTATTTCTTCTaGGGTGTACTCGTCCAGCCG | + |
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Preference number: 3 (lower is better) Translates to: LAVMFYHFHSPTSENHQVSLYFF*GVLVQP Trigger: CGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCT...CACCTGATGATTTTCGGATGTAGGAGAATGGAAATGATAGAACATTACAGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR CCA 72 bp | ATCATTTCCATTCTCCTACATCCGAAAATCATCAGGTaGAGTCCACACTCTGGGGAAAGCCTCTATTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: IISILLHPKIIR*SPHSGESLYFF Trigger: GAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCACCTGATGATTTTCGGATGTAGGAGAATGGAAATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR CAA 72 bp | TGGAGTCCACACTCTGGGGAAAGCCTCTATTTCTTCTaGGGTGTACTCGTCCAGCCGTTTAGGCACTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: WSPHSGESLYFF*GVLVQPFRHSP Trigger: CGGAGAGTGCCTAAACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| CDS-3UTR CCA 90 bp | TTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCATGGTTGCCTCTATTTCTTCTTaGGTGTACTCGTCCAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: FLLRLGLLECSPQGVPMVASISS*VYSSSR Trigger: ACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGC...AACCATGGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CCA 90 bp | TTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCATGGTTCCGAAAATCATCAGGTaGAGTCCACACTCTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: FLLRLGLLECSPQGVPMVPKIIR*SPHSGE Trigger: TTCCCCAGAGTGTGGACTCCACCTGATGATTTTCGG...AACCATGGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| 3UTR CAA 72 bp | ACAGACCTTTGGAGTCTGAGGTTAAGAGCTGCTGAGTaGCAAAGGGGACCTGACACTGTTTGCTCCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TDLWSLRLRAAE*QRGPDTVCSCH Trigger: GTGGCAGGAGCAAACAGTGTCAGGTCCCCTTTGCAACTCAGCAGCTCTTAACCTCAGACTCCAAAGGTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR CCA 90 bp | TTCTTGAGTGTTCCCCACAGGGAGTTCCCATGGTTTCTCTCTGCCTTGGGTCATTTTAGGCACTCTCCGTaGCTGAGGAAGCTCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: FLSVPHREFPWFLSALGHFRHSP*LRKLFH Trigger: GTGGAAGAGCTTCCTCAGCCACGGAGAGTGCCTAAA...ATGACCCAAGGCAGAGAGAAACCATGGGAACTCCCTGTGGGGAACACTCAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CCA 90 bp | TTTAGGATGATGACAGTGGAGTGCCACTACAACAGTCACCCCACCCTCACCTCAACGGAGTCCACACTCTaGGGAAAGCCTCTATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: FRMMTVECHYNSHPTLTSTESTL*GKPLFL Trigger: AAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCGT...TGAGGTGAGGGTGGGGTGACTGTTGTAGTGGCACTCCACTGTCATCATCCTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR TCA 90 bp | GTTCCCCACAGGGAGTTCCCATGGTTTCTCTCTGCCTTGGGTCATGGTAATACTTGGGTAGCCAGTATGTaGGGAGTACACTTTTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: VPHREFPWFLSALGHGNTWVASM*GVHFLF Trigger: GAACAAAAAGTGTACTCCTCACATACTGGCTACCCA...AGTATTACCATGACCCAAGGCAGAGAGAAACCATGGGAACTCCCTGTGGGGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CCA 90 bp | AGGAAGCCATCTAAAAATGCAGATTCCCCCTTTAGGATGATGACAGTGGAGTGCTTTAGGCACTCTCCGTaGCTGAGGAAGCTCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RKPSKNADSPFRMMTVECFRHSP*LRKLFH Trigger: GTGGAAGAGCTTCCTCAGCCACGGAGAGTGCCTAAA...GCACTCCACTGTCATCATCCTAAAGGGGGAATCTGCATTTTTAGATGGCTTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| 3UTR CAA 72 bp | TATCCTCGTCTGGGAAAAGATGCAGCCTTTGCATCATaGTCCTTCTGTGCAGGTTTTTGGGCAGCATGCCAT | + |
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Preference number: 4 (lower is better) Translates to: YPRLGKDAAFAS*SFCAGFWAACH Trigger: ATGGCATGCTGCCCAAAAACCTGCACAGAAGGACAATGATGCAAAGGCTGCATCTTTTCCCAGACGAGGATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| 3UTR CAA 72 bp | GTTCCCCACAGGGAGTTCCCATGGTTTCTCTCTGCCTaGGGTCATGGTAATACTTCAGGAAACATTCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: VPHREFPWFLSA*GHGNTSGNIQS Trigger: AGACTGAATGTTTCCTGAAGTATTACCATGACCCAAGGCAGAGAGAAACCATGGGAACTCCCTGTGGGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS-3UTR TCA 90 bp | AGTGTTCCCCACAGGGAGTTCCCATGGTTTCTCTCTGCCTTGGGTCATGGTAATGTCTTGTGTTTATTATaGCAACGTGGTCTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: SVPHREFPWFLSALGHGNVLCLL*QRGLHS Trigger: ACTGTGGAGACCACGTTGTCATAATAAACACAAGAC...ATTACCATGACCCAAGGCAGAGAGAAACCATGGGAACTCCCTGTGGGGAACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR GCA 90 bp | AGGAAGCCATCTAAAAATGCAGATTCCCCCTTTAGGATGATGACAGTGGAGTGCATCATTGTCCTTCTGTaGAGGTTTTTGGGCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: RKPSKNADSPFRMMTVECIIVLL*RFLGSM Trigger: CATGCTGCCCAAAAACCTGCACAGAAGGACAATGAT...GCACTCCACTGTCATCATCCTAAAGGGGGAATCTGCATTTTTAGATGGCTTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR GCA 90 bp | ACAAGGCTTACAGACCTTTGGAGTCTGAGGTTAAGAGCTGCTGAGTTGCAAAGGAAAAGATGCAGCCTTTaGATCATTGTCCTTCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: TRLTDLWSLRLRAAELQRKRCSL*IIVLLC Trigger: GCACAGAAGGACAATGATGCAAAGGCTGCATCTTTT...CCTTTGCAACTCAGCAGCTCTTAACCTCAGACTCCAAAGGTCTGTAAGCCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR CCA 90 bp | TTAGGTGACACTGTCTTAGGAAGCCATCTAAAAATGCAGATTCCCCCTTTAGGAGCCTCTATTTCTTCTTaGGTGTACTCGTCCAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: LGDTVLGSHLKMQIPPLGASISS*VYSSSR Trigger: ACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGC...TCCTAAAGGGGGAATCTGCATTTTTAGATGGCTTCCTAAGACAGTGTCACCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR GCA 90 bp | ACTTCAGGAAACATTCAGTCTCTTGCTGTAATGTTCTATCATTTCCATTCTCCTCAGGGGGCTGCATTTTaGCATCTAAGAGATACCACA | + |
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Preference number: 4 (lower is better) Translates to: TSGNIQSLAVMFYHFHSPQGAAF*HLRDTT Trigger: TGTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTG...AGGAGAATGGAAATGATAGAACATTACAGCAAGAGACTGAATGTTTCCTGAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| CDS-3UTR GCA 90 bp | GGTCATGGTAATACTTCAGGAAACATTCAGTCTCTTGCTGTAATGTTCTATCATCAGGGGGCTGCATTTTaGCATCTAAGAGATACCACA | + |
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Preference number: 4 (lower is better) Translates to: GHGNTSGNIQSLAVMFYHQGAAF*HLRDTT Trigger: TGTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTG...ATGATAGAACATTACAGCAAGAGACTGAATGTTTCCTGAAGTATTACCATGACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS-3UTR GCA 90 bp | TTGGGTCATGGTAATACTTCAGGAAACATTCAGTCTCTTGCTGTAATGTTCTATATCATTGTCCTTCTGTaGAGGTTTTTGGGCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: LGHGNTSGNIQSLAVMFYIIVLL*RFLGSM Trigger: CATGCTGCCCAAAAACCTGCACAGAAGGACAATGAT...ATAGAACATTACAGCAAGAGACTGAATGTTTCCTGAAGTATTACCATGACCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | TGCACTTTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCCTGCGCAGCTGTTACTaGTCTAAAGCCGCCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: CTFLLRLGLLECSPQGVPLRSCY*SKAAWV Trigger: TACCCAGGCGGCTTTAGACAAGTAACAGCTGCGCAG...GGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAAAGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | CTTCTTGAGTGTTCCCCACAGGGAGTTCCCATGGTTTCTCTCTGCCTTGGGTCAAGCAAAAGTGGCCCATaGCTGGGGCGCCCTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LLECSPQGVPMVSLCLGSSKSGP*LGRPRE Trigger: TTCTCTAGGGCGCCCCAGCAATGGGCCACTTTTGCT...TGACCCAAGGCAGAGAGAAACCATGGGAACTCCCTGTGGGGAACACTCAAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | TGCACTTTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCCCAGGGGGCTGCATTTaGCCATCTAAGAGATACCAC | + |
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Preference number: 5 (lower is better) Translates to: CTFLLRLGLLECSPQGVPPGGCI*PSKRYH Trigger: GTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTGG...GGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAAAGTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | AACAGTCACCCCACCCTCACCTCACACGGTCACAAGGCTTACAGACCTTTGGAGCTGCGCAGCTGTTACTaGTCTAAAGCCGCCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: NSHPTLTSHGHKAYRPLELRSCY*SKAAWV Trigger: TACCCAGGCGGCTTTAGACAAGTAACAGCTGCGCAG...CTCCAAAGGTCTGTAAGCCTTGTGACCGTGTGAGGTGAGGGTGGGGTGACTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR CAA 90 bp | TGCACTTTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCAGCCTCTATTTCTTCTaGGGTGTACTCGTCCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: CTFLLRLGLLECSPQGVPSLYFF*GVLVQP Trigger: CGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCT...GGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAAAGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | GTCCACACTCTGGGGAAAGCCTCTATTTCTTCTTGGGTGTACTCGTCCAGCCGTCCAGGGGGCTGCATTTaGCCATCTAAGAGATACCAC | + |
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Preference number: 5 (lower is better) Translates to: VHTLGKASISSWVYSSSRPGGCI*PSKRYH Trigger: GTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTGG...ACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| CDS-3UTR CAA 90 bp | TGCACTTTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGTTCCCAATCCTTGCAGTTTGTaGGATGCTATAACCGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: CTFLLRLGLLECSPQGVPNPCSL*DAITAS Trigger: ACTTGCGGTTATAGCATCCAACAAACTGCAAGGATT...GGGAACTCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAAAGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | TTCTACTGCACTTTCCTGCTGAGGCTTGGCCTTCTTGAGTGTTCCCCACAGGGAGAAAAGATGCAGCCTTaGCATCATTGTCCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: FYCTFLLRLGLLECSPQGEKMQP*HHCPSV Trigger: CACAGAAGGACAATGATGCAAAGGCTGCATCTTTTC...TCCCTGTGGGGAACACTCAAGAAGGCCAAGCCTCAGCAGGAAAGTGCAGTAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | AAGCCATCTAAAAATGCAGATTCCCCCTTTAGGATGATGACAGTGGAGTGCCACAGCCTCTATTTCTTCTaGGGTGTACTCGTCCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: KPSKNADSPFRMMTVECHSLYFF*GVLVQP Trigger: CGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCT...GTGGCACTCCACTGTCATCATCCTAAAGGGGGAATCTGCATTTTTAGATGGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR CAA 90 bp | AGGAAGCCATCTAAAAATGCAGATTCCCCCTTTAGGATGATGACAGTGGAGTGCGCAGCCTTTGCATCATaGTCCTTCTGTGCAGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: RKPSKNADSPFRMMTVECAAFAS*SFCAGF Trigger: AAAACCTGCACAGAAGGACAATGATGCAAAGGCTGC...GCACTCCACTGTCATCATCCTAAAGGGGGAATCTGCATTTTTAGATGGCTTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR CAA 90 bp | ACAAGGCTTACAGACCTTTGGAGTCTGAGGTTAAGAGCTGCTGAGTTGCAAAGGGAAAAGATGCAGCCTTaGCATCATTGTCCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TRLTDLWSLRLRAAELQREKMQP*HHCPSV Trigger: CACAGAAGGACAATGATGCAAAGGCTGCATCTTTTC...CCTTTGCAACTCAGCAGCTCTTAACCTCAGACTCCAAAGGTCTGTAAGCCTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS-3UTR CAA 90 bp | TTAACATGTGTAGCATTTAAAGCAGGTTACACAGGACTTGTCTGTAAAACAGTAAGCAAAAGTGGCCCATaGCTGGGGCGCCCTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LTCVAFKAGYTGLVCKTVSKSGP*LGRPRE Trigger: TTCTCTAGGGCGCCCCAGCAATGGGCCACTTTTGCT...TACTGTTTTACAGACAAGTCCTGTGTAACCTGCTTTAAATGCTACACATGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | TCTTCCACTAAATTCTTAAGAATATCTTCCGGAATATCCTCGTCTGGGAAAAGAGCTATAACCGCAAGTTaGCCAGGGGGCTGCATTTTG | + |
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Preference number: 5 (lower is better) Translates to: SSTKFLRISSGISSSGKRAITAS*PGGCIL Trigger: CAAAATGCAGCCCCCTGGCAAACTTGCGGTTATAGC...TCTTTTCCCAGACGAGGATATTCCGGAAGATATTCTTAAGAATTTAGTGGAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| CDS-3UTR CAA 90 bp | TTAAGAATATCTTCCGGAATATCCTCGTCTGGGAAAAGATGCAGCCTTTGCATCAATCCTTGCAGTTTGTaGGATGCTATAACCGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: LRISSGISSSGKRCSLCINPCSL*DAITAS Trigger: ACTTGCGGTTATAGCATCCAACAAACTGCAAGGATT...GATGCAAAGGCTGCATCTTTTCCCAGACGAGGATATTCCGGAAGATATTCTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164542.8 |
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| CDS TCA 90 bp | TGTCTTGTGTTTATTATGACAACGTGGTCTCCACAGTCACTCAGCTaGTGGTACACTGGTTTATTTAATCCTTGCAGTTTGTTGGATGCT | + |
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Preference number: 5 (lower is better) Translates to: CLVFIMTTWSPQSLS*WYTGLFNPCSLLDA Trigger: AGCATCCAACAAACTGCAAGGATTAAATAAACCAGTGTACCATCAGCTGAGTGACTGTGGAGACCACGTTGTCATAATAAACACAAGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS-3UTR CAA 90 bp | CATGGTAATACTTCAGGAAACATTCAGTCTCTTGCTGTAATGTTCTATCATTTCGCAGCCTTTGCATCATaGTCCTTCTGTGCAGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: HGNTSGNIQSLAVMFYHFAAFAS*SFCAGF Trigger: AAAACCTGCACAGAAGGACAATGATGCAAAGGCTGC...GAAATGATAGAACATTACAGCAAGAGACTGAATGTTTCCTGAAGTATTACCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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| CDS CAA 72 bp | CGGAGTCCACACTCTGGGGAAAGCCTCTATTTCTTCTaGGGTGTACTCGTCCAGCCGTTTAGGCACTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: RSPHSGESLYFF*GVLVQPFRHSP Trigger: CGGAGAGTGCCTAAACGGCTGGACGAGTACACCCAAGAAGAAATAGAGGCTTTCCCCAGAGTGTGGACTCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165356.2 |
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| CDS TCA 72 bp | ATAGCCAATTTCACAATCGCCACGGGGTCTTTCCGGTaGAGCTGCGCAGCTGTTACTTGTCTAAAGCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: IANFTIATGSFR*SCAAVTCLKPP Trigger: AGGCGGCTTTAGACAAGTAACAGCTGCGCAGCTTCACCGGAAAGACCCCGTGGCGATTGTGAAATTGGCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165356.2 ENSMUST00000172387.8 |
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| CDS CAA 90 bp | AGTTTGTTGGATGCTATAACCGCAAGTTTGCCAGGGGGCTGCATTTaGCCATCTAAGAGATACCACATTCGAGCAAAAGTGGCCCATTGC | + |
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Preference number: 6 (lower is better) Translates to: SLLDAITASLPGGCI*PSKRYHIRAKVAHC Trigger: GCAATGGGCCACTTTTGCTCGAATGTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTGGCAAACTTGCGGTTATAGCATCCAACAAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS GCA 72 bp | TTGTTGGATGCTATAACCGCAAGTTTGCCAGGGGGCTaGATTTTGCCATCTAAGAGATACCACATTCGAGCA | + |
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Preference number: 6 (lower is better) Translates to: LLDAITASLPGG*ILPSKRYHIRA Trigger: TGCTCGAATGTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTGGCAAACTTGCGGTTATAGCATCCAACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS CAA 72 bp | GATGCTATAACCGCAAGTTTGCCAGGGGGCTGCATTTaGCCATCTAAGAGATACCACATTCGAGCAAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: DAITASLPGGCI*PSKRYHIRAKV Trigger: CACTTTTGCTCGAATGTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTGGCAAACTTGCGGTTATAGCATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS CAA 72 bp | AATCCTTGCAGTTTGTTGGATGCTATAACCGCAAGTTaGCCAGGGGGCTGCATTTTGCCATCTAAGAGATAC | + |
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Preference number: 6 (lower is better) Translates to: NPCSLLDAITAS*PGGCILPSKRY Trigger: GTATCTCTTAGATGGCAAAATGCAGCCCCCTGGCAAACTTGCGGTTATAGCATCCAACAAACTGCAAGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS CAA 90 bp | GGTTTATTTAATCCTTGCAGTTTGTTGGATGCTATAACCGCAAGTTaGCCAGGGGGCTGCATTTTGCCATCTAAGAGATACCACATTCGA | + |
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Preference number: 6 (lower is better) Translates to: GLFNPCSLLDAITAS*PGGCILPSKRYHIR Trigger: TCGAATGTGGTATCTCTTAGATGGCAAAATGCAGCCCCCTGGCAAACTTGCGGTTATAGCATCCAACAAACTGCAAGGATTAAATAAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000164542.8 ENSMUST00000172387.8 |
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| CDS TCA 72 bp | TTTATTATGACAACGTGGTCTCCACAGTCACTCAGCTaGTGGTACACTGGTTTATTTAATCCTTGCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: FIMTTWSPQSLS*WYTGLFNPCSL Trigger: CAAACTGCAAGGATTAAATAAACCAGTGTACCATCAGCTGAGTGACTGTGGAGACCACGTTGTCATAATAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172387.8 |
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