Pregenerated sensors for MRPL10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001445Ensembl transcript IDs: ENSMUST00000001485.10, ENSMUST00000054252.5
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAGCAGTTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTaGAACGCCAACGTCAGCCCACCAGGACCCACTCGTGTTCTACTT | + |
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Preference number: 1 (lower is better) Translates to: EAVSLFFPQPSTPEG*NANVSPPGPTRVLL Trigger: AAGTAGAACACGAGTGGGTCCTGGTGGGCTGACGTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAACTGCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR TCA 90 bp | TGGAACGCCAACGTCAGCCCACCAGGACCCACTCGTGTTCTACTTTaGGAATTTGAGGCTTCAGAGAACCGAATTCAAGACCTTATCCAG | + |
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Preference number: 1 (lower is better) Translates to: WNANVSPPGPTRVLL*EFEASENRIQDLIQ Trigger: CTGGATAAGGTCTTGAATTCGGTTCTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGTGGGTCCTGGTGGGCTGACGTTGGCGTTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR GCA 90 bp | AGCTGTCTTCAGACACACCAGAAGAGGTCACCAGTTCATTACAGATaGTTGGGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACC | + |
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Preference number: 1 (lower is better) Translates to: SCLQTHQKRSPVHYR*LGVTMWLLGIELRT Trigger: GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGTAATGAACTGGTGACCTCTTCTGGTGTGTCTGAAGACAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR CCA 90 bp | GGTCACCAGTTCATTACAGATGCTTGGGAGTCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTGTTA | + |
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Preference number: 1 (lower is better) Translates to: GHQFITDAWESPCGC*ELNSGPLEEQSVLL Trigger: TAACAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGTAATGAACTGGTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR TCA 90 bp | TCTCTGTATCATCAAGAGGCCTGTCCCCAAGGAGGTCATTGTGAATaGGAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTT | + |
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Preference number: 1 (lower is better) Translates to: SLYHQEACPQGGHCE*EPSHTRPLPTPNSF Trigger: AAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAATGACCTCCTTGGGGACAGGCCTCTTGATGATACAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR TCA 90 bp | AATTTCTCTGTATCATCAAGAGGCCTGTCCCCAAGGAGGTCATTGTaGATGAGAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTC | + |
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Preference number: 1 (lower is better) Translates to: NFSVSSRGLSPRRSL*MRAKSHKATPHSKF Trigger: GAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAATGACCTCCTTGGGGACAGGCCTCTTGATGATACAGAGAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR GCA 90 bp | CAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTaGCAGACAACGAGACAGACAACAGGGACAGAGTGTGTTTATGGG | + |
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Preference number: 1 (lower is better) Translates to: QVTQGHSPLQILLDL*QTTRQTTGTECVYG Trigger: CCCATAAACACACTCTGTCCCTGTTGTCTGTCTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR-3UTR GCA 90 bp | TATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAACGTCAGCCCACAGTCTCTGTTCTCCCTaGCTTGTGCAGGGAGAACTC | + |
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Preference number: 2 (lower is better) Translates to: YSFHSPAHPKGGTPTSAHSLCSP*LVQGEL Trigger: GAGTTCTCCCTGCACAAGGCAGGGAGAACAGAGACT...GTGGGCTGACGTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR GCA 90 bp | CAGTTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAACGTCTGTGTCTGTAGAGTaGTTGGCACAAGACCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: QFPYSFHSPAHPKGGTPTSVSVE*LAQDPG Trigger: TCCTGGGTCTTGTGCCAAGCACTCTACAGACACAGA...CGTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR TCA 90 bp | AGCAGTTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAAGGAGGTCATTGTGAATaGGAGCCAAGTCACACAAGG | + |
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Preference number: 2 (lower is better) Translates to: SSFPILSTAQHTRRVERQGGHCE*EPSHTR Trigger: CCTTGTGTGACTTGGCTCTCATTCACAATGACCTCC...TTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAACTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR GCA 90 bp | GCAGTTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAACACAAGACCCAGGAGGTaGCATTCACAAGTCTTCCTA | + |
|
Preference number: 2 (lower is better) Translates to: AVSLFFPQPSTPEGWNANTRPRR*HSQVFL Trigger: TAGGAAGACTTGTGAATGGCACCTCCTGGGTCTTGT...GTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR CAA 90 bp | AAGAGGTCACCAGTTCATTACAGATGCTTGGGAGTCACCATGTGGTaGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: KRSPVHYRCLGVTMW*LGIELRTSGRAVSA Trigger: AGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGTAATGAACTGGTGACCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR CAA 90 bp | CCAACGTCAGCCCACCAGGACCCACTCGTGTTCTACTTTGAGAATTaGAGGCTTCAGAGAACCGAATTCAAGACCTTATCCAGAACTCAG | + |
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Preference number: 2 (lower is better) Translates to: PTSAHQDPLVFYFEN*RLQRTEFKTLSRTQ Trigger: CTGAGTTCTGGATAAGGTCTTGAATTCGGTTCTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGTGGGTCCTGGTGGGCTGACGTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR CCA 90 bp | AGCTGTCTTCAGACACACCAGAAGAGGTCACCAGTTCATTACAGATGCTTGGGATCACCATGTGGTTGCTaGGAATTGAACTCAGGACCT | + |
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Preference number: 2 (lower is better) Translates to: SCLQTHQKRSPVHYRCLGSPCGC*ELNSGP Trigger: AGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGA...TCCCAAGCATCTGTAATGAACTGGTGACCTCTTCTGGTGTGTCTGAAGACAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR CCA 90 bp | AGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGACAGAGTGTGTTTATaGGCAGAGCTGGGTAAAACA | + |
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Preference number: 2 (lower is better) Translates to: SHTRPLPTPNSFRSLPDNDRVCL*AELGKT Trigger: TGTTTTACCCAGCTCTGCCCATAAACACACTCTGTC...GTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR-3UTR TCA 90 bp | AGCTGTCTTCAGACACACCAGAAGAGGTCACCAGTTCATTACAGATGCTTGGGAACTCGTGTTCTACTTTaGGAATTTGAGGCTTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: SCLQTHQKRSPVHYRCLGTRVLL*EFEASE Trigger: CTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGT...TCCCAAGCATCTGTAATGAACTGGTGACCTCTTCTGGTGTGTCTGAAGACAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR CCA 90 bp | ATTGTGAATGAGAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGACAGAGTGTGTTTATaGGCAGAGCTGGGTAAAACA | + |
|
Preference number: 2 (lower is better) Translates to: IVNESQVTQGHSPLQILLDRVCL*AELGKT Trigger: TGTTTTACCCAGCTCTGCCCATAAACACACTCTGTC...TAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR CCA 72 bp | TCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTaGAACGCCAACGTCAGCCCACCAGGACCCACTCGT | + |
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Preference number: 3 (lower is better) Translates to: SLFFPQPSTPEG*NANVSPPGPTR Trigger: ACGAGTGGGTCCTGGTGGGCTGACGTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR GCA 72 bp | GGAGGCTGGGCAAGAGTCTCTGTTCTCCCTGCCTTGTaGAGGGAGAACTCAAGGAGACTGCTCCTATCGGGT | + |
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Preference number: 3 (lower is better) Translates to: GGWARVSVLPAL*RENSRRLLLSG Trigger: ACCCGATAGGAGCAGTCTCCTTGAGTTCTCCCTGCACAAGGCAGGGAGAACAGAGACTCTTGCCCAGCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR GCA 72 bp | TGGGTGAGGAGGCTGGGCAAGAGTCTCTGTTCTCCCTaGCTTGTGCAGGGAGAACTCAAGGAGACTGCTCCT | + |
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Preference number: 3 (lower is better) Translates to: WVRRLGKSLCSP*LVQGELKETAP Trigger: AGGAGCAGTCTCCTTGAGTTCTCCCTGCACAAGGCAGGGAGAACAGAGACTCTTGCCCAGCCTCCTCACCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAACGTCATCTGTTCTCCCTGCCTaGTGCAGGGAGAACTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: FPYSFHSPAHPKGGTPTSSVLPA*CRENSR Trigger: CCTTGAGTTCTCCCTGCACAAGGCAGGGAGAACAGA...TGACGTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR TCA 72 bp | CATCAAGAGGCCTGTCCCCAAGGAGGTCATTGTGAATaGGAGCCAAGTCACACAAGGCCACTCCCCACTCCA | + |
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Preference number: 3 (lower is better) Translates to: HQEACPQGGHCE*EPSHTRPLPTP Trigger: TGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAATGACCTCCTTGGGGACAGGCCTCTTGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR GCA 72 bp | TGTGTCTGTAGAGTGCTTGGCACAAGACCCAGGAGGTaGCATTCACAAGTCTTCCTAGCCGGTCCACCATGG | + |
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Preference number: 3 (lower is better) Translates to: CVCRVLGTRPRR*HSQVFLAGPPW Trigger: CCATGGTGGACCGGCTAGGAAGACTTGTGAATGGCACCTCCTGGGTCTTGTGCCAAGCACTCTACAGACACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR TCA 72 bp | GTATCATCAAGAGGCCTGTCCCCAAGGAGGTCATTGTaGATGAGAGCCAAGTCACACAAGGCCACTCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: VSSRGLSPRRSL*MRAKSHKATPH Trigger: GTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAATGACCTCCTTGGGGACAGGCCTCTTGATGATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR TCA 72 bp | TCCAGAACTCAGGCTTCTCTGCTGTTTCCTGAATGGTaGGGACTAAAGGAGCTGGCATCTGTGTCTGTAGAG | + |
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Preference number: 3 (lower is better) Translates to: SRTQASLLFPEW*GLKELASVSVE Trigger: CTCTACAGACACAGATGCCAGCTCCTTTAGTCCTCACCATTCAGGAAACAGCAGAGAAGCCTGAGTTCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR GCA 72 bp | CAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTaGCAGACAACGAGACAGACAACAGGGACAGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: QGHSPLQILLDL*QTTRQTTGTEC Trigger: ACACTCTGTCCCTGTTGTCTGTCTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR TCA 72 bp | AACGTCAGCCCACCAGGACCCACTCGTGTTCTACTTTaGGAATTTGAGGCTTCAGAGAACCGAATTCAAGAC | + |
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Preference number: 3 (lower is better) Translates to: NVSPPGPTRVLL*EFEASENRIQD Trigger: GTCTTGAATTCGGTTCTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGTGGGTCCTGGTGGGCTGACGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR GCA 72 bp | CAGACACACCAGAAGAGGTCACCAGTTCATTACAGATaGTTGGGAGTCACCATGTGGTTGCTGGGAATTGAA | + |
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Preference number: 3 (lower is better) Translates to: QTHQKRSPVHYR*LGVTMWLLGIE Trigger: TTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGTAATGAACTGGTGACCTCTTCTGGTGTGTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR CCA 72 bp | TTCATTACAGATGCTTGGGAGTCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: FITDAWESPCGC*ELNSGPLEEQS Trigger: TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGTAATGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR TCA 72 bp | CCCACCAGGACCCACTCGTGTTCTACTTTGAGAATTTaGGGCTTCAGAGAACCGAATTCAAGACCTTATCCA | + |
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Preference number: 3 (lower is better) Translates to: PTRTHSCSTLRI*GFREPNSRPYP Trigger: TGGATAAGGTCTTGAATTCGGTTCTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGTGGGTCCTGGTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CCA 90 bp | GAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGCACAGTCTGGAGGGTaGGCAGCCAAGCCGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: EPSHTRPLPTPNSFRSLPAQSGG*AAKPPG Trigger: CCCGGGCGGCTTGGCTGCCCACCCTCCAGACTGTGC...TGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | GCCAGACAACGAGACAGACAACAGGGACAGAGTGTGTTTATGGGCAGAGCTGGGGGGCTTGGGAGGAGGTaGCAGGCATCTCGGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: ARQRDRQQGQSVFMGRAGGLGRR*QASRVD Trigger: ATCAACCCGAGATGCCTGCCACCTCCTCCCAAGCCC...CCCAGCTCTGCCCATAAACACACTCTGTCCCTGTTGTCTGTCTCGTTGTCTGGC 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR TCA 90 bp | TGCCAGACAACGAGACAGACAACAGGGACAGAGTGTGTTTATGGGCAGAGCTGGCGAGTCCCTGCCTGCTaGGGATGGTGTCATCAACGC | + |
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Preference number: 4 (lower is better) Translates to: CQTTRQTTGTECVYGQSWRVPAC*GWCHQR Trigger: GCGTTGATGACACCATCCTCAGCAGGCAGGGACTCG...CCAGCTCTGCCCATAAACACACTCTGTCCCTGTTGTCTGTCTCGTTGTCTGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CCA 90 bp | TCAGCCCACCAGGACCCACTCGTGTTCTACTTTGAGAATTTGAGGCTTCAGAGAGGCCTGACTCCTCCTTaGGGGGCTTGGGAGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SAHQDPLVFYFENLRLQRGLTPP*GAWEEV Trigger: CACCTCCTCCCAAGCCCCCCAAGGAGGAGTCAGGCC...TCTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGTGGGTCCTGGTGGGCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CCA 90 bp | AGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGGGCCTGACTCCTCCTTaGGGGGCTTGGGAGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SQVTQGHSPLQILLDLCQGLTPP*GAWEEV Trigger: CACCTCCTCCCAAGCCCCCCAAGGAGGAGTCAGGCC...CTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | ATTGTGAATGAGAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGCACAGTCTGGAGGGTaGGCAGCCAAGCCGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: IVNESQVTQGHSPLQILLAQSGG*AAKPPG Trigger: CCCGGGCGGCTTGGCTGCCCACCCTCCAGACTGTGC...TAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | AGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGGGGCTTGGGAGGAGGTaGCAGGCATCTCGGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: SQVTQGHSPLQILLDLCQGLGRR*QASRVD Trigger: ATCAACCCGAGATGCCTGCCACCTCCTCCCAAGCCC...CTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR CAA 72 bp | GGACTAAAGGAGCTGGCATCTGTGTCTGTAGAGTGCTaGGCACAAGACCCAGGAGGTGCCATTCACAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: GLKELASVSVEC*AQDPGGAIHKS Trigger: AGACTTGTGAATGGCACCTCCTGGGTCTTGTGCCAAGCACTCTACAGACACAGATGCCAGCTCCTTTAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR CAA 72 bp | ACAGATGCTTGGGAGTCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TDAWESPCGCWE*NSGPLEEQSVL Trigger: CAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR TCA 90 bp | TCTCTGTTCTCCCTGCCTTGTGCAGGGAGAACTCAAGGAGACTGCTCCTATCGGTGCTCTTTGACATACTaGTCCAACAGGGAAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SLFSLPCAGRTQGDCSYRCSLTY*SNREVS Trigger: GCTGACTTCCCTGTTGGATCAGTATGTCAAAGAGCA...CCGATAGGAGCAGTCTCCTTGAGTTCTCCCTGCACAAGGCAGGGAGAACAGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CCA 90 bp | TGGAATGGAATTTCTCTGTATCATCAAGAGGCCTGTCCCCAAGGAGGTCATTGTTGCATGACTCGCCAGTaGCGGGTCACAGCCTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: WNGISLYHQEACPQGGHCCMTRQ*RVTALE Trigger: CTCCAAGGCTGTGACCCGCCACTGGCGAGTCATGCA...ACAATGACCTCCTTGGGGACAGGCCTCTTGATGATACAGAGAAATTCCATTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR TCA 90 bp | CCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGACAGACAACAGGGACTGGACAGGCTGGTGCTaGAGCAGGTTTCGGTATTTG | + |
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Preference number: 4 (lower is better) Translates to: PTPNSFRSLPDNETDNRDWTGWC*SRFRYL Trigger: CAAATACCGAAACCTGCTTCAGCACCAGCCTGTCCA...GTCCCTGTTGTCTGTCTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | CAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAGTAGCTGATCCAGGCTaGGCAGCTTGGCATAGTCTA | + |
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Preference number: 4 (lower is better) Translates to: QVTQGHSPLQILLDLCQTVADPG*AAWHSL Trigger: TAGACTATGCCAAGCTGCCCAGCCTGGATCAGCTAC...TGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| 3UTR CAA 72 bp | CCAGTTCATTACAGATGCTTGGGAGTCACCATGTGGTaGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: PVHYRCLGVTMW*LGIELRTSGRA Trigger: TGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCCCAAGCATCTGTAATGAACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR TCA 90 bp | CACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGTGCTCTTTGACATACTaGTCCAACAGGGAAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: HTRPLPTPNSFRSLPDNECSLTY*SNREVS Trigger: GCTGACTTCCCTGTTGGATCAGTATGTCAAAGAGCA...CTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | CACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGGATGTAGCTTCTCATTaGCTGACGTGGCACAATCTC | + |
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Preference number: 4 (lower is better) Translates to: HTRPLPTPNSFRSLPDNEDVASH*LTWHNL Trigger: GAGATTGTGCCACGTCAGCCAATGAGAAGCTACATC...CTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | CAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGACAGGATGTAGCTTCTCATTaGCTGACGTGGCACAATCTC | + |
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Preference number: 4 (lower is better) Translates to: QGHSPLQILLDLCQTTRQDVASH*LTWHNL Trigger: GAGATTGTGCCACGTCAGCCAATGAGAAGCTACATC...CTGTCTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| 3UTR CAA 72 bp | GCCCACCAGGACCCACTCGTGTTCTACTTTGAGAATTaGAGGCTTCAGAGAACCGAATTCAAGACCTTATCC | + |
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Preference number: 4 (lower is better) Translates to: AHQDPLVFYFEN*RLQRTEFKTLS Trigger: GGATAAGGTCTTGAATTCGGTTCTCTGAAGCCTCAAATTCTCAAAGTAGAACACGAGTGGGTCCTGGTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR GCA 90 bp | CACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGGTTGTCCCGAAAAACTaGTACTATATCTTGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: HTRPLPTPNSFRSLPDNEVVPKN*YYILTQ Trigger: CTGCGTCAAGATATAGTAGCAGTTTTTCGGGACAAC...CTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | TGCCAGACAACGAGACAGACAACAGGGACAGAGTGTGTTTATGGGCAGAGCTGGGCAGGTTTCGGTATTTaGAATTTTCTAGAAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: CQTTRQTTGTECVYGQSWAGFGI*NFLEKA Trigger: AGCCTTTTCTAGAAAATTCCAAATACCGAAACCTGC...CCAGCTCTGCCCATAAACACACTCTGTCCCTGTTGTCTGTCTCGTTGTCTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CCA 90 bp | GGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGACAGACAGCAGGTTTCGGTATTTaGAATTTTCTAGAAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: GHSPLQILLDLCQTTRQTAGFGI*NFLEKA Trigger: AGCCTTTTCTAGAAAATTCCAAATACCGAAACCTGC...TGTCTGTCTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR GCA 90 bp | ATTGTGAATGAGAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGTTGTCCCGAAAAACTaGTACTATATCTTGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: IVNESQVTQGHSPLQILLVVPKN*YYILTQ Trigger: CTGCGTCAAGATATAGTAGCAGTTTTTCGGGACAAC...TAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CAA 90 bp | TTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAACGTCAGGCAGGCATCTCGGGTaGATGGCAGGTTTGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: FPYSFHSPAHPKGGTPTSGRHLG*MAGLGG Trigger: TCCTCCCAAACCTGCCATCAACCCGAGATGCCTGCC...TGACGTTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CAA 90 bp | AGCAGTTTCCCTATTCTTTCCACAGCCCAGCACACCCGAAGGGTGGAACGCCAATGTCTCAGGAGAAGCTaGTCCTCTGCACTCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: SSFPILSTAQHTRRVERQCLRRS*SSALRA Trigger: GGCCCTGAGTGCAGAGGACAAGCTTCTCCTGAGACA...TTGGCGTTCCACCCTTCGGGTGTGCTGGGCTGTGGAAAGAATAGGGAAACTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CAA 90 bp | CACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGGGCAGGCATCTCGGGTaGATGGCAGGTTTGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: HTRPLPTPNSFRSLPDNEGRHLG*MAGLGG Trigger: TCCTCCCAAACCTGCCATCAACCCGAGATGCCTGCC...CTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CAA 90 bp | AGTCTCTGTTCTCCCTGCCTTGTGCAGGGAGAACTCAAGGAGACTGCTCCTATCGGGTTGATGGCAGGTTaGGGAGGAATATACTCAGTT | + |
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Preference number: 5 (lower is better) Translates to: SLCSPCLVQGELKETAPIGLMAG*GGIYSV Trigger: AACTGAGTATATTCCTCCCAAACCTGCCATCAACCC...GATAGGAGCAGTCTCCTTGAGTTCTCCCTGCACAAGGCAGGGAGAACAGAGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS-3UTR CAA 90 bp | GGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAGACAACGAGACAGACAGGGTTGATGGCAGGTTaGGGAGGAATATACTCAGTT | + |
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Preference number: 5 (lower is better) Translates to: GHSPLQILLDLCQTTRQTGLMAG*GGIYSV Trigger: AACTGAGTATATTCCTCCCAAACCTGCCATCAACCC...TGTCTGTCTCGTTGTCTGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CAA 90 bp | GAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAGATCTCTGCCAACAATCTCCCTCGTTTaGCTCTTTGACATACTGATC | + |
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Preference number: 5 (lower is better) Translates to: EPSHTRPLPTPNSFRSLPTISLV*LFDILI Trigger: GATCAGTATGTCAAAGAGCAAAACGAGGGAGATTGT...TGGCAGAGATCTAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS-3UTR CAA 90 bp | ATTGTGAATGAGAGCCAAGTCACACAAGGCCACTCCCCACTCCAAATTCTTTTAACAATCTCCCTCGTTTaGCTCTTTGACATACTGATC | + |
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Preference number: 5 (lower is better) Translates to: IVNESQVTQGHSPLQILLTISLV*LFDILI Trigger: GATCAGTATGTCAAAGAGCAAAACGAGGGAGATTGT...TAAAAGAATTTGGAGTGGGGAGTGGCCTTGTGTGACTTGGCTCTCATTCACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS CCA 72 bp | CTTGACGCAGGAGCCGGACGAGGCCTGACTCCTCCTTaGGGGGCTTGGGAGGAGGTGGCAGGCATCTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: LDAGAGRGLTPP*GAWEEVAGISG Trigger: ACCCGAGATGCCTGCCACCTCCTCCCAAGCCCCCCAAGGAGGAGTCAGGCCTCGTCCGGCTCCTGCGTCAAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS TCA 72 bp | TGGGCAGCTTGGCATAGTCTACGAGTCCCTGCCTGCTaGGGATGGTGTCATCAACGCAGCCACCCAGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: WAAWHSLRVPAC*GWCHQRSHPAA Trigger: CGCTGCTGGGTGGCTGCGTTGATGACACCATCCTCAGCAGGCAGGGACTCGTAGACTATGCCAAGCTGCCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001485.10 |
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| CDS TCA 72 bp | GTGGCACAATCTCCCTCGTTTTGCTCTTTGACATACTaGTCCAACAGGGAAGTCAGCTGGACAGGCTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: VAQSPSFCSLTY*SNREVSWTGWC Trigger: GCACCAGCCTGTCCAGCTGACTTCCCTGTTGGATCAGTATGTCAAAGAGCAAAACGAGGGAGATTGTGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS TCA 72 bp | TGGCTGACGTGGCACAATCTCCCTCGTTTTGCTCTTTaGCATACTGATCCAACAGGGAAGTCAGCTGGACAG | + |
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Preference number: 6 (lower is better) Translates to: WLTWHNLPRFAL*HTDPTGKSAGQ Trigger: CTGTCCAGCTGACTTCCCTGTTGGATCAGTATGTCAAAGAGCAAAACGAGGGAGATTGTGCCACGTCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001485.10 ENSMUST00000054252.5 |
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| CDS CCA 72 bp | GCTGGACAGGCTGGTGCTGAAGCAGGTTTCGGTATTTaGAATTTTCTAGAAAAGGCTTTAGGACCTGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: AGQAGAEAGFGI*NFLEKALGPGW Trigger: CCAGCCAGGTCCTAAAGCCTTTTCTAGAAAATTCCAAATACCGAAACCTGCTTCAGCACCAGCCTGTCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054252.5 |
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