RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MROH8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074627

Ensembl transcript IDs: ENSMUST00000143663.2

Found 167 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTAGGCGCCTTTAGCTTCTCCATCTaGATGGAAGTAGATTCAGAC +
Preference number: 2 (lower is better)
Translates to: KQIGEEYSRLVKDVDVGAFSFSI*MEVDSD
Trigger: GTCTGAATCTACTTCCATGCAGATGGAGAAGCTAAA...GGCGCCTACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
3UTR-3UTR CCA 90 bp ATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGAAGTAGATTCAGACTaGATTTTAAGCCTGCTGTCA +
Preference number: 2 (lower is better)
Translates to: ISKNKQIGEEYSRLVKDVEVDSD*ILSLLS
Trigger: TGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTC...CACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
3UTR CCA 72 bp ATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTaGAGAAGAATACAGCAGACTAGTCAAGGATGTGGA +
Preference number: 3 (lower is better)
Translates to: ICVYSHFQEQAD*RRIQQTSQGCG
Trigger: TCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GGATGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTGGCTCCGGTGGGACCTaGTCGGAGGAATGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: GCGCRRQNTCIVLALPFTGSGGT*SEEWRR
Trigger: GCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCC...AGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp AAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTAGGCGCCTGGCTGGGCCCCTCGTaGCACTTCTGCAGCTTCCGC +
Preference number: 4 (lower is better)
Translates to: KQIGEEYSRLVKDVDVGAWLGPS*HFCSFR
Trigger: GCGGAAGCTGCAGAAGTGCCACGAGGGGCCCAGCCA...GGCGCCTACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp TGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTAATGGCGCCGCCGGGTaGGGCGTTGCGCATGGCTCA +
Preference number: 4 (lower is better)
Translates to: CGCRRQNTCIVLALPFTSNGAAG*GVAHGS
Trigger: TGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATT...ACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GGATGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTCCTGGGAGGCAAGGATaGGCAAAGAGGGCTCGGGGT +
Preference number: 4 (lower is better)
Translates to: GCGCRRQNTCIVLALPFTPGRQG*AKRARG
Trigger: ACCCCGAGCCCTCTTTGCGCATCCTTGCCTCCCAGG...AGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp CTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGACCTGCTCGGAGGAATaGCGCCGCCGGGTGAGGCGT +
Preference number: 4 (lower is better)
Translates to: LALPFTSCVTQSKSLSCLTCSEE*RRRVRR
Trigger: ACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGT...CAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TGCATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTCTGCTCGGGCTCCGGTaGGACCTGCTCGGAGGAATG +
Preference number: 4 (lower is better)
Translates to: CIVLALPFTSCVTQSKSLLLGLR*DLLGGM
Trigger: CATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAG...AAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTATGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCTTTGCAGCCTGGCGCACCATGCTaGTTAGAGAGTGCAGAGGCT +
Preference number: 4 (lower is better)
Translates to: CMEVDSDWILSLLSCALQPGAPC*LESAEA
Trigger: AGCCTCTGCACTCTCTAACCAGCATGGTGCGCCAGG...CTGCAAAGCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp CTCCATCTGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCGGAGTTTGTTCCCCATaGGCACCTCATAAAGGGCAT +
Preference number: 4 (lower is better)
Translates to: LHLHGSRFRLDFKPAVMCGVCSP*APHKGH
Trigger: ATGCCCTTTATGAGGTGCTCATGGGGAACAAACTCC...GCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCAGATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GGATGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTGAACGTCGTCTAAGTTaGTCAGCTGCAGGTCTACAC +
Preference number: 4 (lower is better)
Translates to: GCGCRRQNTCIVLALPFTERRLS*SAAGLH
Trigger: GTGTAGACCTGCAGCTGAGCAACTTAGACGACGTTC...AGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTAGGATGCTGGTTAGAGAGTaGAGAGGCTCCTCCTGTACC +
Preference number: 4 (lower is better)
Translates to: EQADWRRIQQTSQGCGCRMLVRE*RGSSCT
Trigger: GGTACAGGAGGAGCCTCTGCACTCTCTAACCAGCAT...CCTACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp CCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATTCTCCTGGCGCACCATaGTGGTTAGAGAGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: PISKNKQIGEEYSRLVKDSPGAP*WLESAE
Trigger: CTCTGCACTCTCTAACCAGCATGGTGCGCCAGGAGA...ATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp TTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCGTAGTGTGTCCCCTCTaGAGCCTCCTCAGCCACCTC +
Preference number: 4 (lower is better)
Translates to: FIPISKNKQIGEEYSRLVVVCPL*SLLSHL
Trigger: GAGGTGGCTGAGGAGGCTGCAGAGGGGACACACTAC...GACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GGATGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTTGCTGGATACAGGGATaGGGCAGATTTTTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: GCGCRRQNTCIVLALPFTCWIQG*GRFFRL
Trigger: CAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCA...AGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp CTCCATCTGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCCCTCTGGAACTGCAGTaGAAGCTTCAGGCTGAGATA +
Preference number: 4 (lower is better)
Translates to: LHLHGSRFRLDFKPAVMCPLELQ*KLQAEI
Trigger: TATCTCAGCCTGAAGCTTCCACTGCAGTTCCAGAGG...GCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCAGATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAAGCCACCTCTTTCTGTaGGTCCCCACACAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: DLCLFPFPRTSRLEKNTASHLFL*VPTQQR
Trigger: GCGCTGCTGTGTGGGGACCCACAGAAAGAGGTGGCT...TGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTAAGGCCGATGCTGTGGTaGATCTGGATGAGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLRPMLW*IWMSRV
Trigger: GACCCTGCTCATCCAGATTCACCACAGCATCGGCCT...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp CCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATTCATCTCCTGGTGTCTaGCAAGATTTCGCAGTCCCC +
Preference number: 4 (lower is better)
Translates to: PISKNKQIGEEYSRLVKDSSPGV*QDFAVP
Trigger: GGGGACTGCGAAATCTTGTCAGACACCAGGAGATGA...ATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp TTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCCCGAGCCTCTGGAACTaGAGTGGAAGCTTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: FIPISKNKQIGEEYSRLVPSLWN*SGSFRL
Trigger: CAGCCTGAAGCTTCCACTGCAGTTCCAGAGGCTCGG...GACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTAGGTGGTACTTCCTGCTCTaGATACAGGCCACTTGGGAT +
Preference number: 4 (lower is better)
Translates to: EQADWRRIQQTSQGCGCRWYFLL*IQATWD
Trigger: ATCCCAAGTGGCCTGTATGCAGAGCAGGAAGTACCA...CCTACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGCCCGTTCCCGCTCATaGTCTCTGTCGGACTGTAAC +
Preference number: 4 (lower is better)
Translates to: VFIPISKNKQIGEEYSRLARSRS*SLSDCN
Trigger: GTTACAGTCCGACAGAGACCATGAGCGGGAACGGGC...TAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp ATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATCTCCTGCTGTCTGCTaGATACAGGGATGCGGCAGA +
Preference number: 4 (lower is better)
Translates to: IVLALPFTSCVTQSKSLSSPAVC*IQGCGR
Trigger: TCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGA...TGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp CTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGAGGGTCATCAAAAGCTaGGGAAAGAGTCGGAATGCG +
Preference number: 4 (lower is better)
Translates to: LALPFTSCVTQSKSLSCLRVIKS*GKSRNA
Trigger: CGCATTCCGACTCTTTCCTCAGCTTTTGATGACCCT...CAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTAAGGAGGAACACTCCCTaGAGATGGCCTTCTCCCTTC +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLRRNTP*RWPSPF
Trigger: GAAGGGAGAAGGCCATCTTCAGGGAGTGTTCCTCCT...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp GGATGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTTCAGTGCAAGGATCCTaGAGAGCTTACTCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GCGCRRQNTCIVLALPFTSVQGS*RAYSLH
Trigger: ATGAAGAGAGTAAGCTCTTCAGGATCCTTGCACTGA...AGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GAGCAGATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATAAACTCTCCTGCTGTCTaGTGGATACAGGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: EQICVYSHFQEQADWRRINSPAV*WIQGCG
Trigger: GCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTT...TATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATCTGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp TGCATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTAGCATCCTGACAAGCTaGAGGAGAATCTGGATAGCC +
Preference number: 4 (lower is better)
Translates to: CIVLALPFTSCVTQSKSLSILTS*RRIWIA
Trigger: GGCTATCCAGATTCTCCTGCAGCTTGTCAGGATGCT...AAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp AATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAAGCTCGATGGCCTGGTTaGACACTATCTTCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: NTCIVLALPFTSCVTQSKARWPG*TLSSAA
Trigger: AGCTGCTGAAGATAGTGTCCAACCAGGCCATCGAGC...TTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp CAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCGGATGGCATAAAAGGTaGCTGAGCACTACATCTGTG +
Preference number: 4 (lower is better)
Translates to: QNTCIVLALPFTSCVTQSGWHKR*LSTTSV
Trigger: CACAGATGTAGTGCTCAGCCACCTTTTATGCCATCC...GCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCTTTGCAGTCATACGGTACTGGATaGCATAAAAGGTGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: CMEVDSDWILSLLSCALQSYGTG*HKRWLS
Trigger: GCTCAGCCACCTTTTATGCCATCCAGTACCGTATGA...CTGCAAAGCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp ATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGATTCGGAACAGAGCCTaGGAGGCAAGGATGCGCAAA +
Preference number: 4 (lower is better)
Translates to: IPISKNKQIGEEYSRLVKIRNRA*EARMRK
Trigger: TTTGCGCATCCTTGCCTCCCAGGCTCTGTTCCGAAT...CTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp GTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTACAGGTCTACACTCCCTaGGTCACTGTCAGAAGCACA +
Preference number: 4 (lower is better)
Translates to: VFIPISKNKQIGEEYSRLQVYTP*VTVRST
Trigger: TGTGCTTCTGACAGTGACTCAGGGAGTGTAGACCTG...TAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp CTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGAGCAGTAGAACCGTTTaGGGCTATATTGCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: LALPFTSCVTQSKSLSCLSSRTV*GYIAPA
Trigger: TGCTGGAGCAATATAGCCTCAAACGGTTCTACTGCT...CAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp ATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGTATCAGCAACTCTCCTaGTGTCTGCTGGATACAGGG +
Preference number: 4 (lower is better)
Translates to: IPISKNKQIGEEYSRLVKYQQLS*CLLDTG
Trigger: CCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGATA...CTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGAAAGCATTTGAGAACTTaGGCCATGACAGTGGTAGCC +
Preference number: 4 (lower is better)
Translates to: SHFQEQADWRRIQQTSQGKHLRT*AMTVVA
Trigger: GGCTACCACTGTCATGGCCCAAGTTCTCAAATGCTT...TCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTAAGATTCCCGAGCCTCTaGAACTGCAGTGGAAGCTTC +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLRFPSL*NCSGSF
Trigger: GAAGCTTCCACTGCAGTTCCAGAGGCTCGGGAATCT...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAATCGTCATGATAAACTaGCCGAGCTCCCGAGAGTCG +
Preference number: 4 (lower is better)
Translates to: VFIPISKNKQIGEEYSRLIVMIN*PSSRES
Trigger: CGACTCTCGGGAGCTCGGCCAGTTTATCATGACGAT...TAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp AAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTATGCATACAGGCCACTTaGGATGCTGACGTCAGACAT +
Preference number: 4 (lower is better)
Translates to: KNKQIGEEYSRLVKDVDVCIQAT*DADVRH
Trigger: ATGTCTGACGTCAGCATCCCAAGTGGCCTGTATGCA...TACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp TCCATCTGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCTTGTCTCTGTCCTGCATaGTATATTTCAGTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: SICMEVDSDWILSLLSCACLCPA*YISVSE
Trigger: CTCTGAGACTGAAATATATCATGCAGGACAGAGACA...AGCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCAGATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp ATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGTGTGGTGAATCTGGATaGGCAGGGTCATCAAAAGCT +
Preference number: 4 (lower is better)
Translates to: IPISKNKQIGEEYSRLVKCGESG*AGSSKA
Trigger: AGCTTTTGATGACCCTGCTCATCCAGATTCACCACA...CTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp AAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTAATGGCAGCAGGCTTTTaGTGTCTTCTCTCATCTCCT +
Preference number: 4 (lower is better)
Translates to: KNKQIGEEYSRLVKDVDVMAAGF*CLLSSP
Trigger: AGGAGATGAGAGAAGACATCAAAAGCCTGCTGCCAT...TACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp CCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTAAAACTTCCTGGATaGACTGGACCAGTCTCTCAA +
Preference number: 4 (lower is better)
Translates to: PISKNKQIGEEYSRLVKDVKLPG*TGPVSQ
Trigger: TTGAGAGACTGGTCCAGTCCATCCAGGAAGTTTTAC...ATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp ATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGCCATGTAAAACTTCCTaGATGGACTGGACCAGTCTC +
Preference number: 4 (lower is better)
Translates to: ISKNKQIGEEYSRLVKDVPCKTS*MDWTSL
Trigger: GAGACTGGTCCAGTCCATCCAGGAAGTTTTACATGG...CACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp ATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGTTTCCATCAAGGCATTaGCAAGGAGGAACACTCCCT +
Preference number: 4 (lower is better)
Translates to: ISKNKQIGEEYSRLVKDVFPSRH*QGGTLP
Trigger: AGGGAGTGTTCCTCCTTGCCAATGCCTTGATGGAAA...CACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCTTTGCAGAGCTGCAGGAGAATCTaGATAGCCAACAAAATGATC +
Preference number: 4 (lower is better)
Translates to: CMEVDSDWILSLLSCALQSCRRI*IANKMI
Trigger: GATCATTTTGTTGGCTATCCAGATTCTCCTGCAGCT...CTGCAAAGCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp CTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGAGGAACTTCAACTTTTaGGTTTCCCCCTTTAGCTCA +
Preference number: 4 (lower is better)
Translates to: LALPFTSCVTQSKSLSCLRNFNF*VSPFSS
Trigger: TGAGCTAAAGGGGGAAACTCAAAAGTTGAAGTTCCT...CAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTAAGGCGTAACCTCCATTaGTACTTCCTGCTCTGCATA +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLRRNLH*YFLLCI
Trigger: TATGCAGAGCAGGAAGTACCAATGGAGGTTACGCCT...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TCCATCTGCATGGAAGTAGATTCAGACTGGATTTTAAGCCTGCTGTCATGTGCTGTTTCACAGCCTTTATaGATGCTCCAAAAAGAGTCA +
Preference number: 4 (lower is better)
Translates to: SICMEVDSDWILSLLSCAVSQPL*MLQKES
Trigger: TGACTCTTTTTGGAGCATCCATAAAGGCTGTGAAAC...AGCACATGACAGCAGGCTTAAAATCCAGTCTGAATCTACTTCCATGCAGATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp GTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTGGAAGCTTCAGGCTaGGATAACTGGATAAGCATT +
Preference number: 4 (lower is better)
Translates to: VFIPISKNKQIGEEYSRLVEASG*DNWISI
Trigger: AATGCTTATCCAGTTATCTCAGCCTGAAGCTTCCAC...TAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp GATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAAGACAGCTGTTCTTCTaGTGGGAAGTTTTGGATCCT +
Preference number: 4 (lower is better)
Translates to: DLCLFPFPRTSRLEKNTARQLFF*WEVLDP
Trigger: AGGATCCAAAACTTCCCATCAGAAGAACAGCTGTCT...TGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGTATTTATGATCTGTTaGCGGACACTAGTCAGGGTG +
Preference number: 4 (lower is better)
Translates to: DLCLFPFPRTSRLEKNTAVFMIC*RTLVRV
Trigger: CACCCTGACTAGTGTCCGGCAACAGATCATAAATAC...TGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp AATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAAGCAGATGTGAGTTTATaGTTGTCATTCCCTCGGTTA +
Preference number: 4 (lower is better)
Translates to: NTCIVLALPFTSCVTQSKADVSL*LSFPRL
Trigger: TAACCGAGGGAATGACAAGCATAAACTCACATCTGC...TTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp AAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTATGTATAAGGGATCTTTaGAGTATACTTCTCGGGGCA +
Preference number: 4 (lower is better)
Translates to: KNKQIGEEYSRLVKDVDVCIRDL*SILLGA
Trigger: TGCCCCGAGAAGTATACTGCAAAGATCCCTTATACA...TACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp TCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGAAACAGGTACACATTTTaGAAACTGAGGTCAGTGATG +
Preference number: 4 (lower is better)
Translates to: SHFQEQADWRRIQQTSQGNRYTF*KLRSVM
Trigger: CATCACTGACCTCAGTTTCCAAAATGTGTACCTGTT...TCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTATCTTCTCTCATCTCCTaGTGTCTGACAAGATTTCGC +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLSSLIS*CLTRFR
Trigger: GCGAAATCTTGTCAGACACCAGGAGATGAGAGAAGA...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GAGCAGATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATATCTGATGGGAAGTTTTaGATCCTTGGAATACGGCAG +
Preference number: 4 (lower is better)
Translates to: EQICVYSHFQEQADWRRISDGKF*ILGIRQ
Trigger: CTGCCGTATTCCAAGGATCCAAAACTTCCCATCAGA...TATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATCTGCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR TCA 90 bp AAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTATTATATGCAAAGAGGTaGCTTCTTTCCATCAAGGCA +
Preference number: 4 (lower is better)
Translates to: KNKQIGEEYSRLVKDVDVLYAKR*LLSIKA
Trigger: TGCCTTGATGGAAAGAAGTCACCTCTTTGCATATAA...TACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTACTCCAAAAAGAGTCATaGAGAAACAGTGAACGTCCT +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLLQKES*RNSERP
Trigger: AGGACGTTCACTGTTTCTCCATGACTCTTTTTGGAG...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp TTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAACATGCACTATTTCTaGTGTGTGGCGGTGAATAAA +
Preference number: 4 (lower is better)
Translates to: FIPISKNKQIGEEYSRLVNMHYF*CVAVNK
Trigger: TTTATTCACCGCCACACAGCAGAAATAGTGCATGTT...GACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GAGCAGATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATAAACACACTTAGAACATaGACTATTTCTGCTGTGTGG +
Preference number: 4 (lower is better)
Translates to: EQICVYSHFQEQADWRRINTLRT*TISAVW
Trigger: CCACACAGCAGAAATAGTGCATGTTCTAAGTGTGTT...TATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATCTGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp ATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATTGTTGTCTCTGTCCTaGATGATATATTTCAGTCTC +
Preference number: 4 (lower is better)
Translates to: IVLALPFTSCVTQSKSLSLLSLS*MIYFSL
Trigger: GAGACTGAAATATATCATGCAGGACAGAGACAACAA...TGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR GCA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTAAACCAGGGGTCTATGTaGTTAAAAATGCTGTCAAAA +
Preference number: 4 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLNQGSM*LKMLSK
Trigger: TTTTGACAGCATTTTTAAGCACATAGACCCCTGGTT...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 90 bp GCTCGGGCTCCGGTGGGACCTGCTCGGAGGAATGGCGCCGCCGGGTaGGGCGTTGCGCATGGCTCAATAGTGGGGCCCCGCGGCCGACAC +
Preference number: 5 (lower is better)
Translates to: ARAPVGPARRNGAAG*GVAHGSIVGPRGRH
Trigger: GTGTCGGCCGCGGGGCCCCACTATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AGTGGCGTGTGCCGCGGGTCCCTGGCGTCCCCTCCGGCGCGCTCTTaGAGCCACTTCCCGGAGCGGAAGTCTGCCTGCTCGGGCTCCGGT +
Preference number: 5 (lower is better)
Translates to: SGVCRGSLASPPARS*SHFPERKSACSGSG
Trigger: ACCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAGTGGCTCCAAGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp GTCCCCTCCGGCGCGCTCTTGGAGCCACTTCCCGGAGCGGAAGTCTaGCTGCTCGGGCTCCGGTGGGACCTGCTCGGAGGAATGGCGCCG +
Preference number: 5 (lower is better)
Translates to: VPSGALLEPLPGAEV*LLGLRWDLLGGMAP
Trigger: CGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAGTGGCTCCAAGAGCGCGCCGGAGGGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp GTACCGCTGGCCCTTTGCCGGGAGCCCATTCTGGCAAGTGGCGTGTaGCGCGGGTCCCTGGCGTCCCCTCCGGCGCGCTCTTGGAGCCAC +
Preference number: 5 (lower is better)
Translates to: VPLALCREPILASGV*RGSLASPPARSWSH
Trigger: GTGGCTCCAAGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp TCCGGTGGGACCTGCTCGGAGGAATGGCGCCGCCGGGTGAGGCGTTaGGCATGGCTCAATAGTGGGGCCCCGCGGCCGACACGCTTTGGG +
Preference number: 5 (lower is better)
Translates to: SGGTCSEEWRRRVRR*AWLNSGAPRPTRFG
Trigger: CCCAAAGCGTGTCGGCCGCGGGGCCCCACTATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp CACTTCCCGGAGCGGAAGTCTGCCTGCTCGGGCTCCGGTGGGACCTaGTCGGAGGAATGGCGCCGCCGGGTGAGGCGTTGCGCATGGCTC +
Preference number: 5 (lower is better)
Translates to: HFPERKSACSGSGGT*SEEWRRRVRRCAWL
Trigger: GAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TTGGAGCCACTTCCCGGAGCGGAAGTCTGCCTGCTCGGGCTCCGGTaGGACCTGCTCGGAGGAATGGCGCCGCCGGGTGAGGCGTTGCGC +
Preference number: 5 (lower is better)
Translates to: LEPLPGAEVCLLGLR*DLLGGMAPPGEALR
Trigger: GCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAGTGGCTCCAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TTTGCCGGGAGCCCATTCTGGCAAGTGGCGTGTGCCGCGGGTCCCTaGCGTCCCCTCCGGCGCGCTCTTGGAGCCACTTCCCGGAGCGGA +
Preference number: 5 (lower is better)
Translates to: FAGSPFWQVACAAGP*RPLRRALGATSRSG
Trigger: TCCGCTCCGGGAAGTGGCTCCAAGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp CGGAAGTCTGCCTGCTCGGGCTCCGGTGGGACCTGCTCGGAGGAATaGCGCCGCCGGGTGAGGCGTTGCGCATGGCTCAATAGTGGGGCC +
Preference number: 5 (lower is better)
Translates to: RKSACSGSGGTCSEE*RRRVRRCAWLNSGA
Trigger: GGCCCCACTATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TTCTTCTGTACCGCTGGCCCTTTGCCGGGAGCCCATTCTGGCAAGTaGCGTGTGCCGCGGGTCCCTGGCGTCCCCTCCGGCGCGCTCTTG +
Preference number: 5 (lower is better)
Translates to: FFCTAGPLPGAHSGK*RVPRVPGVPSGALL
Trigger: CAAGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TCACTACTTCTTCTGTACCGCTGGCCCTTTGCCGGGAGCCCATTCTaGCAAGTGGCGTGTGCCGCGGGTCCCTGGCGTCCCCTCCGGCGC +
Preference number: 5 (lower is better)
Translates to: SLLLLYRWPFAGSPF*QVACAAGPWRPLRR
Trigger: GCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp TCAGAAGCACAGGGGATCACTACTTCTTCTGTACCGCTGGCCCTTTaGCGGGAGCCCATTCTGGCAAGTGGCGTGTGCCGCGGGTCCCTG +
Preference number: 5 (lower is better)
Translates to: SEAQGITTSSVPLAL*REPILASGVCRGSL
Trigger: CAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGATCCCCTGTGCTTCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp CAGGTAGTGTGTCCCCTCTGCAGCCTCCTCAGCCACCTCTTTCTGTaGGTCCCCACACAGCAGCGCCATCACAGCCACGAGATTCCCGAG +
Preference number: 5 (lower is better)
Translates to: QVVCPLCSLLSHLFL*VPTQQRHHSHEIPE
Trigger: CTCGGGAATCTCGTGGCTGTGATGGCGCTGCTGTGTGGGGACCCACAGAAAGAGGTGGCTGAGGAGGCTGCAGAGGGGACACACTACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AGTCACTGTCAGAAGCACAGGGGATCACTACTTCTTCTGTACCGCTaGCCCTTTGCCGGGAGCCCATTCTGGCAAGTGGCGTGTGCCGCG +
Preference number: 5 (lower is better)
Translates to: SHCQKHRGSLLLLYR*PFAGSPFWQVACAA
Trigger: CGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGATCCCCTGTGCTTCTGACAGTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 90 bp GCTGAGGAAAGAGTCGGAATGCGGCTGCTCGGAGTTTGTTCCCCATaGGCACCTCATAAAGGGCATCGGTCACAGCAACAGCCACGTAGG +
Preference number: 5 (lower is better)
Translates to: AEERVGMRLLGVCSP*APHKGHRSQQQPRR
Trigger: CCTACGTGGCTGTTGCTGTGACCGATGCCCTTTATGAGGTGCTCATGGGGAACAAACTCCGAGCAGCCGCATTCCGACTCTTTCCTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TCTGCTTCTGATGTACTCCCCACCCTCTGGATTCGGAACAGAGCCTaGGAGGCAAGGATGCGCAAAGAGGGCTCGGGGTCTTGTAACAGT +
Preference number: 5 (lower is better)
Translates to: SASDVLPTLWIRNRA*EARMRKEGSGSCNS
Trigger: ACTGTTACAAGACCCCGAGCCCTCTTTGCGCATCCTTGCCTCCCAGGCTCTGTTCCGAATCCAGAGGGTGGGGAGTACATCAGAAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AACCAGGAAACGCTTGTCTCTGCTTCTGATGTACTCCCCACCCTCTaGATTCGGAACAGAGCCTGGGAGGCAAGGATGCGCAAAGAGGGC +
Preference number: 5 (lower is better)
Translates to: NQETLVSASDVLPTL*IRNRAWEARMRKEG
Trigger: GCCCTCTTTGCGCATCCTTGCCTCCCAGGCTCTGTTCCGAATCCAGAGGGTGGGGAGTACATCAGAAGCAGAGACAAGCGTTTCCTGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AGGCGTAACCTCCATTGGTACTTCCTGCTCTGCATACAGGCCACTTaGGATGCTGACGTCAGACATGGTGAGGCCGATGCTGTGGTGAAT +
Preference number: 5 (lower is better)
Translates to: RRNLHWYFLLCIQAT*DADVRHGEADAVVN
Trigger: ATTCACCACAGCATCGGCCTCACCATGTCTGACGTCAGCATCCCAAGTGGCCTGTATGCAGAGCAGGAAGTACCAATGGAGGTTACGCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp ATATTTCAGTCTCAGAGTGATATGAAGCAGGTAGTGTGTCCCCTCTaGAGCCTCCTCAGCCACCTCTTTCTGTGGGTCCCCACACAGCAG +
Preference number: 5 (lower is better)
Translates to: IFQSQSDMKQVVCPL*SLLSHLFLWVPTQQ
Trigger: CTGCTGTGTGGGGACCCACAGAAAGAGGTGGCTGAGGAGGCTGCAGAGGGGACACACTACCTGCTTCATATCACTCTGAGACTGAAATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp GCTTGTATGGCGAAGCACAAAGGCGTAACCTCCATTGGTACTTCCTaGTCTGCATACAGGCCACTTGGGATGCTGACGTCAGACATGGTG +
Preference number: 5 (lower is better)
Translates to: ACMAKHKGVTSIGTS*SAYRPLGMLTSDMV
Trigger: CACCATGTCTGACGTCAGCATCCCAAGTGGCCTGTATGCAGAGCAGGAAGTACCAATGGAGGTTACGCCTTTGTGCTTCGCCATACAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 90 bp GGCTCCTGGAGAGTAAGTAACCTGAGGTTATCTGGCAGGGACTCCTaGGGCAGTGTAGGGATGTCAGCGATGTCCGAATCTGTGAATTCA +
Preference number: 5 (lower is better)
Translates to: GSWRVSNLRLSGRDS*GSVGMSAMSESVNS
Trigger: TGAATTCACAGATTCGGACATCGCTGACATCCCTACACTGCCTCAGGAGTCCCTGCCAGATAACCTCAGGTTACTTACTCTCCAGGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp GTGTTGGACAGCTCTACCTCCAGGGATCTCCACAATTCAGCCAGATaGCTGTCATACGGTACTGGATGGCATAAAAGGTGGCTGAGCACT +
Preference number: 5 (lower is better)
Translates to: VLDSSTSRDLHNSAR*LSYGTGWHKRWLST
Trigger: AGTGCTCAGCCACCTTTTATGCCATCCAGTACCGTATGACAGGCATCTGGCTGAATTGTGGAGATCCCTGGAGGTAGAGCTGTCCAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp TTCAGAAGGGTCCATCCGCCGCTCTTTTCCATGATGCTGAACTCCTaGCAGCACAGGGTTCTGAGGAGGAGAGTCTTTGTAGCTTGTATG +
Preference number: 5 (lower is better)
Translates to: FRRVHPPLFSMMLNS*QHRVLRRRVFVACM
Trigger: CATACAAGCTACAAAGACTCTCCTCCTCAGAACCCTGTGCTGGCAGGAGTTCAGCATCATGGAAAAGAGCGGCGGATGGACCCTTCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp GCCTCTGCACTCTTCACCAAGGTTATCAGCAACTCTCCTGCTGTCTaGTGGATACAGGGATGCGGCAGATTTTTCAGGCTGTCCAATATC +
Preference number: 5 (lower is better)
Translates to: ASALFTKVISNSPAV*WIQGCGRFFRLSNI
Trigger: GATATTGGACAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGATAACCTTGGTGAAGAGTGCAGAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp ACAGATCACACCTACTATTTCTGGCACCCTCTCAAACCGAGCCTCTaGACTCTTCACCAAGGTTATCAGCAACTCTCCTGCTGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: TDHTYYFWHPLKPSL*TLHQGYQQLSCCLL
Trigger: CAGCAGACAGCAGGAGAGTTGCTGATAACCTTGGTGAAGAGTGCAGAGGCTCGGTTTGAGAGGGTGCCAGAAATAGTAGGTGTGATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp CATTTGAGAACTTGGGCCATGACAGTGGTAGCCCGTTCCCGCTCATaGTCTCTGTCGGACTGTAACCAGGGGTCTATGTGCTTAAAAATG +
Preference number: 5 (lower is better)
Translates to: HLRTWAMTVVARSRS*SLSDCNQGSMCLKM
Trigger: CATTTTTAAGCACATAGACCCCTGGTTACAGTCCGACAGAGACCATGAGCGGGAACGGGCTACCACTGTCATGGCCCAAGTTCTCAAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AGTCTTTGTAGCTTGTATGGCGAAGCACAAAGGCGTAACCTCCATTaGTACTTCCTGCTCTGCATACAGGCCACTTGGGATGCTGACGTC +
Preference number: 5 (lower is better)
Translates to: SLCSLYGEAQRRNLH*YFLLCIQATWDADV
Trigger: GACGTCAGCATCCCAAGTGGCCTGTATGCAGAGCAGGAAGTACCAATGGAGGTTACGCCTTTGTGCTTCGCCATACAAGCTACAAAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 90 bp TCAGCGATGTCCGAATCTGTGAATTCAACACTAGCTCCACCCTTTTaGACGTCGTCTAAGTTGCTCAGCTGCAGGTCTACACTCCCTGAG +
Preference number: 5 (lower is better)
Translates to: SAMSESVNSTLAPPF*TSSKLLSCRSTLPE
Trigger: CTCAGGGAGTGTAGACCTGCAGCTGAGCAACTTAGACGACGTTCAAAAGGGTGGAGCTAGTGTTGAATTCACAGATTCGGACATCGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp GTGATGGTGACAAAGATCTCCTGGCGCACCATGCTGGTTAGAGAGTaGAGAGGCTCCTCCTGTACCAACACACTTAGAACATGCACTATT +
Preference number: 5 (lower is better)
Translates to: VMVTKISWRTMLVRE*RGSSCTNTLRTCTI
Trigger: AATAGTGCATGTTCTAAGTGTGTTGGTACAGGAGGAGCCTCTGCACTCTCTAACCAGCATGGTGCGCCAGGAGATCTTTGTCACCATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TCTGCACTCTTCACCAAGGTTATCAGCAACTCTCCTGCTGTCTGCTaGATACAGGGATGCGGCAGATTTTTCAGGCTGTCCAATATCGTC +
Preference number: 5 (lower is better)
Translates to: SALFTKVISNSPAVC*IQGCGRFFRLSNIV
Trigger: GACGATATTGGACAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGATAACCTTGGTGAAGAGTGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp GGATGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTCCTGTAGAGACACTCTaGCTCGATGGCCTGGTTGGA +
Preference number: 5 (lower is better)
Translates to: GCGCRRQNTCIVLALPFTPVETL*LDGLVG
Trigger: TCCAACCAGGCCATCGAGCAAGAGTGTCTCTACAGG...AGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp TTCTCTCATCTCCTGGTGTCTGACAAGATTTCGCAGTCCCCTCAGTaGAAGGATCCTGAAGAGCTTACTCTCTTCATTCAGCCAGGCTTT +
Preference number: 5 (lower is better)
Translates to: FSHLLVSDKISQSPQ*KDPEELTLFIQPGF
Trigger: AAAGCCTGGCTGAATGAAGAGAGTAAGCTCTTCAGGATCCTTGCACTGAGGGGACTGCGAAATCTTGTCAGACACCAGGAGATGAGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp TTCATCATGGTAGCCAAGGTGGTGGAGTCTAGCATCCTGACAAGCTaGAGGAGAATCTGGATAGCCAACAAAATGATCCTCTCATCGGTC +
Preference number: 5 (lower is better)
Translates to: FIMVAKVVESSILTS*RRIWIANKMILSSV
Trigger: GACCGATGAGAGGATCATTTTGTTGGCTATCCAGATTCTCCTGCAGCTTGTCAGGATGCTAGACTCCACCACCTTGGCTACCATGATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AGGGATCTCCACAATTCAGCCAGATGCCTGTCATACGGTACTGGATaGCATAAAAGGTGGCTGAGCACTACATCTGTGTACTTAGGTCTG +
Preference number: 5 (lower is better)
Translates to: RDLHNSARCLSYGTG*HKRWLSTTSVYLGL
Trigger: CAGACCTAAGTACACAGATGTAGTGCTCAGCCACCTTTTATGCCATCCAGTACCGTATGACAGGCATCTGGCTGAATTGTGGAGATCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp ACCAAGGTTATCAGCAACTCTCCTGCTGTCTGCTGGATACAGGGATaGGGCAGATTTTTCAGGCTGTCCAATATCGTCATGATAAACTGG +
Preference number: 5 (lower is better)
Translates to: TKVISNSPAVCWIQG*GRFFRLSNIVMINW
Trigger: CCAGTTTATCATGACGATATTGGACAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGATAACCTTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp TACTTAGGTCTGGAGACAAACAGACTCACAGTATTTATGATCTGTTaGCGGACACTAGTCAGGGTGATTATCGACAGCCGAGCACAGATC +
Preference number: 5 (lower is better)
Translates to: YLGLETNRLTVFMIC*RTLVRVIIDSRAQI
Trigger: GATCTGTGCTCGGCTGTCGATAATCACCCTGACTAGTGTCCGGCAACAGATCATAAATACTGTGAGTCTGTTTGTCTCCAGACCTAAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp AATTCAGCCAGATGCCTGTCATACGGTACTGGATGGCATAAAAGGTaGCTGAGCACTACATCTGTGTACTTAGGTCTGGAGACAAACAGA +
Preference number: 5 (lower is better)
Translates to: NSARCLSYGTGWHKR*LSTTSVYLGLETNR
Trigger: TCTGTTTGTCTCCAGACCTAAGTACACAGATGTAGTGCTCAGCCACCTTTTATGCCATCCAGTACCGTATGACAGGCATCTGGCTGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp AATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAACTTTCCATCAAGGCATaGGCAAGGAGGAACACTCCC +
Preference number: 5 (lower is better)
Translates to: NTCIVLALPFTSCVTQSKLSIKA*ARRNTP
Trigger: GGGAGTGTTCCTCCTTGCCAATGCCTTGATGGAAAG...TTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 90 bp CCACATAATGTGATAAGAGCCCTACAAACAAGACAGCTGTTCTTCTaGTGGGAAGTTTTGGATCCTTGGAATACGGCAGTGTTTGGTCGA +
Preference number: 5 (lower is better)
Translates to: PHNVIRALQTRQLFF*WEVLDPWNTAVFGR
Trigger: TCGACCAAACACTGCCGTATTCCAAGGATCCAAAACTTCCCATCAGAAGAACAGCTGTCTTGTTTGTAGGGCTCTTATCACATTATGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp GAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGGATGTAGGCTCAAGTTCTTGCTATaGTTGTCTCTGTCCTGCATG +
Preference number: 5 (lower is better)
Translates to: EQADWRRIQQTSQGCGCRLKFLL*LSLSCM
Trigger: CATGCAGGACAGAGACAACAATAGCAAGAACTTGAG...CCTACATCCACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp GAGCAGATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACCGTTTGAGGCTATATaGCTCCAGCAGCAACCTGCA +
Preference number: 5 (lower is better)
Translates to: EQICVYSHFQEQADWRRIPFEAI*LQQQPA
Trigger: TGCAGGTTGCTGCTGGAGCAATATAGCCTCAAACGG...TATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATCTGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 90 bp ATTCCCTCGGTTAATCAAAGGGACCAGCAAGTACAAGATCTTATATaGAAAGAGGTGACTTCTTTCCATCAAGGCATTGGCAAGGAGGAA +
Preference number: 5 (lower is better)
Translates to: IPSVNQRDQQVQDLI*KEVTSFHQGIGKEE
Trigger: TTCCTCCTTGCCAATGCCTTGATGGAAAGAAGTCACCTCTTTGCATATAAGATCTTGTACTTGCTGGTCCCTTTGATTAACCGAGGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp TGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTCAACAGGTACACATTTaGGAAACTGAGGTCAGTGAT +
Preference number: 5 (lower is better)
Translates to: CGCRRQNTCIVLALPFTSQQVHI*ETEVSD
Trigger: ATCACTGACCTCAGTTTCCAAAATGTGTACCTGTTG...ACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp ATAGTTCTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCAGAGAGTCTTTGTAGCTaGTATGGCGAAGCACAAAGG +
Preference number: 5 (lower is better)
Translates to: IVLALPFTSCVTQSKSLSESLCS*YGEAQR
Trigger: CCTTTGTGCTTCGCCATACAAGCTACAAAGACTCTC...TGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAGAACTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp TGTGGATGTAGGCGCCAGAATACTTGCATAGTTCTGGCTTTGCCATTTACTAGTGATGTGAGTTTATGCTaGTCATTCCCTCGGTTAATC +
Preference number: 5 (lower is better)
Translates to: CGCRRQNTCIVLALPFTSDVSLC*SFPRLI
Trigger: GATTAACCGAGGGAATGACAAGCATAAACTCACATC...ACTAGTAAATGGCAAAGCCAGAACTATGCAAGTATTCTGGCGCCTACATCCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 90 bp TCTCTGTGTGTTTCACAGCCTTTATGGATGCTCCAAAAAGAGTCATaGAGAAACAGTGAACGTCCTGTCTCACATCACCAAATAAGGAAA +
Preference number: 5 (lower is better)
Translates to: SLCVSQPLWMLQKES*RNSERPVSHHQIRK
Trigger: TTTCCTTATTTGGTGATGTGAGACAGGACGTTCACTGTTTCTCCATGACTCTTTTTGGAGCATCCATAAAGGCTGTGAAACACACAGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp GATCTGTGTTTATTCCCATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGGAAGTTTTGGATCCTaGGAATACGGCAGTGTTTGG +
Preference number: 5 (lower is better)
Translates to: DLCLFPFPRTSRLEKNTAGSFGS*EYGSVW
Trigger: CCAAACACTGCCGTATTCCAAGGATCCAAAACTTCC...TGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAATGGGAATAAACACAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp CTGGCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGAGAGAGATTATACTTTaGGTGATAAGCCCAAGCAAG +
Preference number: 5 (lower is better)
Translates to: LALPFTSCVTQSKSLSCLREIIL*VISPSK
Trigger: CTTGCTTGGGCTTATCACCAAAAGTATAATCTCTCT...CAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGCCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp ATTTCCAAGAACAAGCAGATTGGAGAAGAATACAGCAGACTAGTCAAGGATGTGTTTTCTCCAAAGAATTaGCAGACCCTTCTAACTTCA +
Preference number: 5 (lower is better)
Translates to: ISKNKQIGEEYSRLVKDVFSPKN*QTLLTS
Trigger: TGAAGTTAGAAGGGTCTGCAAATTCTTTGGAGAAAA...CACATCCTTGACTAGTCTGCTGTATTCTTCTCCAATCTGCTTGTTCTTGGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS-3UTR CAA 90 bp GCTTTGCCATTTACTAGTTGTGTGACCCAGAGCAAATCACTTTCATGTTTGTTAGTCATAAGGTATAGTTaGGCTCAAAGAAGACAAAGA +
Preference number: 5 (lower is better)
Translates to: ALPFTSCVTQSKSLSCLLVIRYS*AQRRQR
Trigger: TCTTTGTCTTCTTTGAGCCAAACTATACCTTATGAC...TAACAAACATGAAAGTGATTTGCTCTGGGTCACACAACTAGTAAATGGCAAAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GCCCTTTGCCGGGAGCCCATTCTGGCAAGTGGCGTGTaGCGCGGGTCCCTGGCGTCCCCTCCGGCGCGCTCT +
Preference number: 6 (lower is better)
Translates to: ALCREPILASGV*RGSLASPPARS
Trigger: AGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp AAGTGGCGTGTGCCGCGGGTCCCTGGCGTCCCCTCCGGCGCGCTCTaGGAGCCACTTCCCGGAGCGGAAGTCTGCCTGCTCGGGCTCCGG +
Preference number: 6 (lower is better)
Translates to: KWRVPRVPGVPSGAL*EPLPGAEVCLLGLR
Trigger: CCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAGTGGCTCCAAGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp CCGGTGGGACCTGCTCGGAGGAATGGCGCCGCCGGGTaGGGCGTTGCGCATGGCTCAATAGTGGGGCCCCGC +
Preference number: 6 (lower is better)
Translates to: PVGPARRNGAAG*GVAHGSIVGPR
Trigger: GCGGGGCCCCACTATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GAGCGGAAGTCTGCCTGCTCGGGCTCCGGTGGGACCTaGTCGGAGGAATGGCGCCGCCGGGTGAGGCGTTGC +
Preference number: 6 (lower is better)
Translates to: ERKSACSGSGGT*SEEWRRRVRRC
Trigger: GCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCGCTC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp CTTCCCGGAGCGGAAGTCTGCCTGCTCGGGCTCCGGTaGGACCTGCTCGGAGGAATGGCGCCGCCGGGTGAG +
Preference number: 6 (lower is better)
Translates to: LPGAEVCLLGLR*DLLGGMAPPGE
Trigger: CTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp ACCTGCTCGGAGGAATGGCGCCGCCGGGTGAGGCGTTaGGCATGGCTCAATAGTGGGGCCCCGCGGCCGACA +
Preference number: 6 (lower is better)
Translates to: TCSEEWRRRVRR*AWLNSGAPRPT
Trigger: TGTCGGCCGCGGGGCCCCACTATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GGCGCGCTCTTGGAGCCACTTCCCGGAGCGGAAGTCTaGCTGCTCGGGCTCCGGTGGGACCTGCTCGGAGGA +
Preference number: 6 (lower is better)
Translates to: GALLEPLPGAEV*LLGLRWDLLGG
Trigger: TCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGCAGACTTCCGCTCCGGGAAGTGGCTCCAAGAGCGCGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp GCCTGCTCGGGCTCCGGTGGGACCTGCTCGGAGGAATaGCGCCGCCGGGTGAGGCGTTGCGCATGGCTCAAT +
Preference number: 6 (lower is better)
Translates to: ACSGSGGTCSEE*RRRVRRCAWLN
Trigger: ATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGAGCAGGTCCCACCGGAGCCCGAGCAGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp AGCCCATTCTGGCAAGTGGCGTGTGCCGCGGGTCCCTaGCGTCCCCTCCGGCGCGCTCTTGGAGCCACTTCC +
Preference number: 6 (lower is better)
Translates to: SPFWQVACAAGP*RPLRRALGATS
Trigger: GGAAGTGGCTCCAAGAGCGCGCCGGAGGGGACGCCAGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp TCGGAGGAATGGCGCCGCCGGGTGAGGCGTTGCGCATaGCTCAATAGTGGGGCCCCGCGGCCGACACGCTTT +
Preference number: 6 (lower is better)
Translates to: SEEWRRRVRRCA*LNSGAPRPTRF
Trigger: AAAGCGTGTCGGCCGCGGGGCCCCACTATTGAGCCATGCGCAACGCCTCACCCGGCGGCGCCATTCCTCCGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp GTCAGAAGCACAGGGGATCACTACTTCTTCTGTACCGCTGGCCCTTaGCCGGGAGCCCATTCTGGCAAGTGGCGTGTGCCGCGGGTCCCT +
Preference number: 6 (lower is better)
Translates to: VRSTGDHYFFCTAGP*PGAHSGKWRVPRVP
Trigger: AGGGACCCGCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGATCCCCTGTGCTTCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp CAGGGGATCACTACTTCTTCTGTACCGCTGGCCCTTTaGCGGGAGCCCATTCTGGCAAGTGGCGTGTGCCGC +
Preference number: 6 (lower is better)
Translates to: QGITTSSVPLAL*REPILASGVCR
Trigger: GCGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGATCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp GATGTACTCCCCACCCTCTGGATTCGGAACAGAGCCTaGGAGGCAAGGATGCGCAAAGAGGGCTCGGGGTCT +
Preference number: 6 (lower is better)
Translates to: DVLPTLWIRNRA*EARMRKEGSGS
Trigger: AGACCCCGAGCCCTCTTTGCGCATCCTTGCCTCCCAGGCTCTGTTCCGAATCCAGAGGGTGGGGAGTACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 72 bp ACAGGGGATCACTACTTCTTCTGTACCGCTGGCCCTTaGCCGGGAGCCCATTCTGGCAAGTGGCGTGTGCCG +
Preference number: 6 (lower is better)
Translates to: TGDHYFFCTAGP*PGAHSGKWRVP
Trigger: CGGCACACGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGATCCCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp CAGAAGCACAGGGGATCACTACTTCTTCTGTACCGCTaGCCCTTTGCCGGGAGCCCATTCTGGCAAGTGGCG +
Preference number: 6 (lower is better)
Translates to: QKHRGSLLLLYR*PFAGSPFWQVA
Trigger: CGCCACTTGCCAGAATGGGCTCCCGGCAAAGGGCCAGCGGTACAGAAGAAGTAGTGATCCCCTGTGCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp ACTTGGGCCATGACAGTGGTAGCCCGTTCCCGCTCATaGTCTCTGTCGGACTGTAACCAGGGGTCTATGTGC +
Preference number: 6 (lower is better)
Translates to: TWAMTVVARSRS*SLSDCNQGSMC
Trigger: GCACATAGACCCCTGGTTACAGTCCGACAGAGACCATGAGCGGGAACGGGCTACCACTGTCATGGCCCAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp GCTTCCGCAGGAGCCTCCATAGGACCCAGGTCGTGTTaGACAGCTCTACCTCCAGGGATCTCCACAATTCAG +
Preference number: 6 (lower is better)
Translates to: ASAGASIGPRSC*TALPPGISTIQ
Trigger: CTGAATTGTGGAGATCCCTGGAGGTAGAGCTGTCCAACACGACCTGGGTCCTATGGAGGCTCCTGCGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp ACGCTTGTCTCTGCTTCTGATGTACTCCCCACCCTCTaGATTCGGAACAGAGCCTGGGAGGCAAGGATGCGC +
Preference number: 6 (lower is better)
Translates to: TLVSASDVLPTL*IRNRAWEARMR
Trigger: GCGCATCCTTGCCTCCCAGGCTCTGTTCCGAATCCAGAGGGTGGGGAGTACATCAGAAGCAGAGACAAGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 72 bp AGCTTCCGCAGGAGCCTCCATAGGACCCAGGTCGTGTaGGACAGCTCTACCTCCAGGGATCTCCACAATTCA +
Preference number: 6 (lower is better)
Translates to: SFRRSLHRTQVV*DSSTSRDLHNS
Trigger: TGAATTGTGGAGATCCCTGGAGGTAGAGCTGTCCAACACGACCTGGGTCCTATGGAGGCTCCTGCGGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp AGAGTCGGAATGCGGCTGCTCGGAGTTTGTTCCCCATaGGCACCTCATAAAGGGCATCGGTCACAGCAACAG +
Preference number: 6 (lower is better)
Translates to: RVGMRLLGVCSP*APHKGHRSQQQ
Trigger: CTGTTGCTGTGACCGATGCCCTTTATGAGGTGCTCATGGGGAACAAACTCCGAGCAGCCGCATTCCGACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GAGCAGGGTCATCAAAAGCTGAGGAAAGAGTCGGAATaGGGCTGCTCGGAGTTTGTTCCCCATGAGCACCTC +
Preference number: 6 (lower is better)
Translates to: EQGHQKLRKESE*GCSEFVPHEHL
Trigger: GAGGTGCTCATGGGGAACAAACTCCGAGCAGCCGCATTCCGACTCTTTCCTCAGCTTTTGATGACCCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 72 bp TTCAGCCAGGCTTTCAGGCGGATAGTAGAGTATACCTaGGGCAGTCTCCTGGCCATCGGACTCTTCAGGAGC +
Preference number: 6 (lower is better)
Translates to: FSQAFRRIVEYT*GSLLAIGLFRS
Trigger: GCTCCTGAAGAGTCCGATGGCCAGGAGACTGCCCAAGGTATACTCTACTATCCGCCTGAAAGCCTGGCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GCGAAGCACAAAGGCGTAACCTCCATTGGTACTTCCTaGTCTGCATACAGGCCACTTGGGATGCTGACGTCA +
Preference number: 6 (lower is better)
Translates to: AKHKGVTSIGTS*SAYRPLGMLTS
Trigger: TGACGTCAGCATCCCAAGTGGCCTGTATGCAGAGCAGGAAGTACCAATGGAGGTTACGCCTTTGTGCTTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp TGCTCGATGGCCTGGTTGGACACTATCTTCAGCAGCTaGATAGGGGTGCTTGTGGCGGGCAGAGAGATTATA +
Preference number: 6 (lower is better)
Translates to: CSMAWLDTIFSS*IGVLVAGREII
Trigger: TATAATCTCTCTGCCCGCCACAAGCACCCCTATCCAGCTGCTGAAGATAGTGTCCAACCAGGCCATCGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp CCCTTTAGCTCACCATGTAAAACTTCCTGGATGGACTaGACCAGTCTCTCAATGCTGGTCTCACTGAGGGGC +
Preference number: 6 (lower is better)
Translates to: PFSSPCKTSWMD*TSLSMLVSLRG
Trigger: GCCCCTCAGTGAGACCAGCATTGAGAGACTGGTCCAGTCCATCCAGGAAGTTTTACATGGTGAGCTAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 72 bp GAAGACAGCACAAGAGCTTCCTCAACCAGGAAACGCTaGTCTCTGCTTCTGATGTACTCCCCACCCTCTGGA +
Preference number: 6 (lower is better)
Translates to: EDSTRASSTRKR*SLLLMYSPPSG
Trigger: TCCAGAGGGTGGGGAGTACATCAGAAGCAGAGACAAGCGTTTCCTGGTTGAGGAAGCTCTTGTGCTGTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp AGCAGCTGGATAGGGGTGCTTGTGGCGGGCAGAGAGATTATACTTTaGGTGATAAGCCCAAGCAAGTCCTCTCGGTCTTCAGAGCCAAAC +
Preference number: 6 (lower is better)
Translates to: SSWIGVLVAGREIIL*VISPSKSSRSSEPN
Trigger: GTTTGGCTCTGAAGACCGAGAGGACTTGCTTGGGCTTATCACCAAAAGTATAATCTCTCTGCCCGCCACAAGCACCCCTATCCAGCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp GAACTCCTGCCAGCACAGGGTTCTGAGGAGGAGAGTCTTTGTAGCTaGTATGGCGAAGCACAAAGGCGTAACCTCCATTGGTACTTCCTG +
Preference number: 6 (lower is better)
Translates to: ELLPAQGSEEESLCS*YGEAQRRNLHWYFL
Trigger: CAGGAAGTACCAATGGAGGTTACGCCTTTGTGCTTCGCCATACAAGCTACAAAGACTCTCCTCCTCAGAACCCTGTGCTGGCAGGAGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp AGAGTAAGTAACCTGAGGTTATCTGGCAGGGACTCCTaGGGCAGTGTAGGGATGTCAGCGATGTCCGAATCT +
Preference number: 6 (lower is better)
Translates to: RVSNLRLSGRDS*GSVGMSAMSES
Trigger: AGATTCGGACATCGCTGACATCCCTACACTGCCTCAGGAGTCCCTGCCAGATAACCTCAGGTTACTTACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp CTCTTCACCAAGGTTATCAGCAACTCTCCTGCTGTCTaGTGGATACAGGGATGCGGCAGATTTTTCAGGCTG +
Preference number: 6 (lower is better)
Translates to: LFTKVISNSPAV*WIQGCGRFFRL
Trigger: CAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGATAACCTTGGTGAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp ACCTACTATTTCTGGCACCCTCTCAAACCGAGCCTCTaGACTCTTCACCAAGGTTATCAGCAACTCTCCTGC +
Preference number: 6 (lower is better)
Translates to: TYYFWHPLKPSL*TLHQGYQQLSC
Trigger: GCAGGAGAGTTGCTGATAACCTTGGTGAAGAGTGCAGAGGCTCGGTTTGAGAGGGTGCCAGAAATAGTAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp AGCTCTACCTCCAGGGATCTCCACAATTCAGCCAGATaGCTGTCATACGGTACTGGATGGCATAAAAGGTGG +
Preference number: 6 (lower is better)
Translates to: SSTSRDLHNSAR*LSYGTGWHKRW
Trigger: CCACCTTTTATGCCATCCAGTACCGTATGACAGGCATCTGGCTGAATTGTGGAGATCCCTGGAGGTAGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GGTCATCAAAAGCTGAGGAAAGAGTCGGAATGCGGCTaGTCGGAGTTTGTTCCCCATGAGCACCTCATAAAG +
Preference number: 6 (lower is better)
Translates to: GHQKLRKESECG*SEFVPHEHLIK
Trigger: CTTTATGAGGTGCTCATGGGGAACAAACTCCGAGCAGCCGCATTCCGACTCTTTCCTCAGCTTTTGATGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp TTCACCAAGGTTATCAGCAACTCTCCTGCTGTCTGCTaGATACAGGGATGCGGCAGATTTTTCAGGCTGTCC +
Preference number: 6 (lower is better)
Translates to: FTKVISNSPAVC*IQGCGRFFRLS
Trigger: GGACAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGATAACCTTGGTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp AGCTTGTATGGCGAAGCACAAAGGCGTAACCTCCATTaGTACTTCCTGCTCTGCATACAGGCCACTTGGGAT +
Preference number: 6 (lower is better)
Translates to: SLYGEAQRRNLH*YFLLCIQATWD
Trigger: ATCCCAAGTGGCCTGTATGCAGAGCAGGAAGTACCAATGGAGGTTACGCCTTTGTGCTTCGCCATACAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp ATCAGCAACTCTCCTGCTGTCTGCTGGATACAGGGATaGGGCAGATTTTTCAGGCTGTCCAATATCGTCATG +
Preference number: 6 (lower is better)
Translates to: ISNSPAVCWIQG*GRFFRLSNIVM
Trigger: CATGACGATATTGGACAGCCTGAAAAATCTGCCGCATCCCTGTATCCAGCAGACAGCAGGAGAGTTGCTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp GTAGCCAAGGTGGTGGAGTCTAGCATCCTGACAAGCTaGAGGAGAATCTGGATAGCCAACAAAATGATCCTC +
Preference number: 6 (lower is better)
Translates to: VAKVVESSILTS*RRIWIANKMIL
Trigger: GAGGATCATTTTGTTGGCTATCCAGATTCTCCTGCAGCTTGTCAGGATGCTAGACTCCACCACCTTGGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp AGATGCCTGTCATACGGTACTGGATGGCATAAAAGGTaGCTGAGCACTACATCTGTGTACTTAGGTCTGGAG +
Preference number: 6 (lower is better)
Translates to: RCLSYGTGWHKR*LSTTSVYLGLE
Trigger: CTCCAGACCTAAGTACACAGATGTAGTGCTCAGCCACCTTTTATGCCATCCAGTACCGTATGACAGGCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp CACAATTCAGCCAGATGCCTGTCATACGGTACTGGATaGCATAAAAGGTGGCTGAGCACTACATCTGTGTAC +
Preference number: 6 (lower is better)
Translates to: HNSARCLSYGTG*HKRWLSTTSVY
Trigger: GTACACAGATGTAGTGCTCAGCCACCTTTTATGCCATCCAGTACCGTATGACAGGCATCTGGCTGAATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp GTACTTAGGTCTGGAGACAAACAGACTCACAGTATTTATGATCTGTaGCCGGACACTAGTCAGGGTGATTATCGACAGCCGAGCACAGAT +
Preference number: 6 (lower is better)
Translates to: VLRSGDKQTHSIYDL*PDTSQGDYRQPSTD
Trigger: ATCTGTGCTCGGCTGTCGATAATCACCCTGACTAGTGTCCGGCAACAGATCATAAATACTGTGAGTCTGTTTGTCTCCAGACCTAAGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp CCTACAAACAAGACAGCTGTTCTTCTGATGGGAAGTTTTGGATCCTaGGAATACGGCAGTGTTTGGTCGAGGATGTCTATCTTCCCCTTG +
Preference number: 6 (lower is better)
Translates to: PTNKTAVLLMGSFGS*EYGSVWSRMSIFPL
Trigger: CAAGGGGAAGATAGACATCCTCGACCAAACACTGCCGTATTCCAAGGATCCAAAACTTCCCATCAGAAGAACAGCTGTCTTGTTTGTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp TCCGAATCTGTGAATTCAACACTAGCTCCACCCTTTTaGACGTCGTCTAAGTTGCTCAGCTGCAGGTCTACA +
Preference number: 6 (lower is better)
Translates to: SESVNSTLAPPF*TSSKLLSCRST
Trigger: TGTAGACCTGCAGCTGAGCAACTTAGACGACGTTCAAAAGGGTGGAGCTAGTGTTGAATTCACAGATTCGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS GCA 72 bp CTGGAGACAAACAGACTCACAGTATTTATGATCTGTTaGCGGACACTAGTCAGGGTGATTATCGACAGCCGA +
Preference number: 6 (lower is better)
Translates to: LETNRLTVFMIC*RTLVRVIIDSR
Trigger: TCGGCTGTCGATAATCACCCTGACTAGTGTCCGGCAACAGATCATAAATACTGTGAGTCTGTTTGTCTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 72 bp TCTGGAGACAAACAGACTCACAGTATTTATGATCTGTaGCCGGACACTAGTCAGGGTGATTATCGACAGCCG +
Preference number: 6 (lower is better)
Translates to: SGDKQTHSIYDL*PDTSQGDYRQP
Trigger: CGGCTGTCGATAATCACCCTGACTAGTGTCCGGCAACAGATCATAAATACTGTGAGTCTGTTTGTCTCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 90 bp TTGCAGACCCTTCTAACTTCATTTGGTTTGATGTATAAGGGATCTTaGCAGTATACTTCTCGGGGCAGCTTCCAATTCAGGAACCGGGCA +
Preference number: 6 (lower is better)
Translates to: LQTLLTSFGLMYKGS*QYTSRGSFQFRNRA
Trigger: TGCCCGGTTCCTGAATTGGAAGCTGCCCCGAGAAGTATACTGCAAAGATCCCTTATACATCAAACCAAATGAAGTTAGAAGGGTCTGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp CCTGAACAATCTTGTAGGGACAGCAGTAGAACCGTTTaGGGCTATATTGCTCCAGCAGCAACCTGCATTTTT +
Preference number: 6 (lower is better)
Translates to: PEQSCRDSSRTV*GYIAPAATCIF
Trigger: AAAAATGCAGGTTGCTGCTGGAGCAATATAGCCTCAAACGGTTCTACTGCTGTCCCTACAAGATTGTTCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp GAAAACAGAAGTAGTGGGACTAAGCTCTCCAGCACTTaGTCTTCCACGCTCTTCTTCTCTGTGTGTTTCACA +
Preference number: 6 (lower is better)
Translates to: ENRSSGTKLSST*SSTLFFSVCFT
Trigger: TGTGAAACACACAGAGAAGAAGAGCGTGGAAGATCAAGTGCTGGAGAGCTTAGTCCCACTACTTCTGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp GTGATAAGAGCCCTACAAACAAGACAGCTGTTCTTCTaGTGGGAAGTTTTGGATCCTTGGAATACGGCAGTG +
Preference number: 6 (lower is better)
Translates to: VIRALQTRQLFF*WEVLDPWNTAV
Trigger: CACTGCCGTATTCCAAGGATCCAAAACTTCCCATCAGAAGAACAGCTGTCTTGTTTGTAGGGCTCTTATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp GTTTCACAGCCTTTATGGATGCTCCAAAAAGAGTCATaGAGAAACAGTGAACGTCCTGTCTCACATCACCAA +
Preference number: 6 (lower is better)
Translates to: VSQPLWMLQKES*RNSERPVSHHQ
Trigger: TTGGTGATGTGAGACAGGACGTTCACTGTTTCTCCATGACTCTTTTTGGAGCATCCATAAAGGCTGTGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CCA 72 bp TACAAACAAGACAGCTGTTCTTCTGATGGGAAGTTTTaGATCCTTGGAATACGGCAGTGTTTGGTCGAGGAT +
Preference number: 6 (lower is better)
Translates to: YKQDSCSSDGKF*ILGIRQCLVED
Trigger: ATCCTCGACCAAACACTGCCGTATTCCAAGGATCCAAAACTTCCCATCAGAAGAACAGCTGTCTTGTTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp TTTATGGATGCTCCAAAAAGAGTCATGGAGAAACAGTaGACGTCCTGTCTCACATCACCAAATAAGGAAAGC +
Preference number: 6 (lower is better)
Translates to: FMDAPKRVMEKQ*TSCLTSPNKES
Trigger: GCTTTCCTTATTTGGTGATGTGAGACAGGACGTTCACTGTTTCTCCATGACTCTTTTTGGAGCATCCATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS CAA 72 bp CTTCTAACTTCATTTGGTTTGATGTATAAGGGATCTTaGCAGTATACTTCTCGGGGCAGCTTCCAATTCAGG +
Preference number: 6 (lower is better)
Translates to: LLTSFGLMYKGS*QYTSRGSFQFR
Trigger: CCTGAATTGGAAGCTGCCCCGAGAAGTATACTGCAAAGATCCCTTATACATCAAACCAAATGAAGTTAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2
CDS TCA 72 bp AACATGCACTATTTCTGCTGTGTGGCGGTGAATAAATaGTTCCGTGTTTTCGTCATAAGGTATAGTTTGGCT +
Preference number: 6 (lower is better)
Translates to: NMHYFCCVAVNK*FRVFVIRYSLA
Trigger: AGCCAAACTATACCTTATGACGAAAACACGGAATCATTTATTCACCGCCACACAGCAGAAATAGTGCATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143663.2