Pregenerated sensors for MRNIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020381Ensembl transcript IDs: ENSMUST00000020647.10, ENSMUST00000123164.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGATACTTCAACCAACGGGACTCGAGGGGCTTAGACGGTGCCTGCTaGCTCCCAGCCTCGGCCTGCAGAGGGCCTGCATTTTCTTCTTCA | + |
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Preference number: 1 (lower is better) Translates to: RYFNQRDSRGLDGAC*LPASACRGPAFSSS Trigger: TGAAGAAGAAAATGCAGGCCCTCTGCAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTCGAGTCCCGTTGGTTGAAGTATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTCCTGGTCCTCGCAGCCCTTGTCCAGATACTTCAACCAACGGGACTCGAGGTTAGACGGTGCCTGCTaGCTCCCAGCCTCGGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: SSWSSQPLSRYFNQRDSRLDGAC*LPASAC Trigger: GCAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAA...CCTCGAGTCCCGTTGGTTGAAGTATCTGGACAAGGGCTGCGAGGACCAGGAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGTCCAGCTCCTGGTCCTCGCAGCCCTTGTCCAGATACTTCAACCAACGGGAGAGGGGCTTAGACGGTaGCTGCTGACTCCCAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: SVQLLVLAALVQILQPTGEGLRR*LLTPSL Trigger: GAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTC...TCCCGTTGGTTGAAGTATCTGGACAAGGGCTGCGAGGACCAGGAGCTGGACAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| 3UTR-3UTR GCA 90 bp | CCCTCTGTCCAGCTCCTGGTCCTCGCAGCCCTTGTCCAGATACTTCAACCAACGGGCCTGCAGAGGGCCTaGATTTTCTTCTTCACTGCC | + |
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Preference number: 2 (lower is better) Translates to: PSVQLLVLAALVQILQPTGLQRA*IFFFTA Trigger: GGCAGTGAAGAAGAAAATGCAGGCCCTCTGCAGGCC...CGTTGGTTGAAGTATCTGGACAAGGGCTGCGAGGACCAGGAGCTGGACAGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| 3UTR TCA 72 bp | AACCAACGGGACTCGAGGGGCTTAGACGGTGCCTGCTaGCTCCCAGCCTCGGCCTGCAGAGGGCCTGCATTT | + |
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Preference number: 3 (lower is better) Translates to: NQRDSRGLDGAC*LPASACRGPAF Trigger: AAATGCAGGCCCTCTGCAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTCGAGTCCCGTTGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| 3UTR GCA 72 bp | ATACTTCAACCAACGGGACTCGAGGGGCTTAGACGGTaGCTGCTGACTCCCAGCCTCGGCCTGCAGAGGGCC | + |
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Preference number: 3 (lower is better) Translates to: ILQPTGLEGLRR*LLTPSLGLQRA Trigger: GGCCCTCTGCAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTCGAGTCCCGTTGGTTGAAGTAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| 3UTR TCA 72 bp | ATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTaGCAAGGAGGACTGGCATTGAGGGACACAGAACAG | + |
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Preference number: 3 (lower is better) Translates to: IVGLFVPEHPSL*QGGLALRDTEQ Trigger: CTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR TCA 90 bp | CCAACGGGACTCGAGGGGCTTAGACGGTGCCTGCTGACTCCCAGCCTCGGCCTGCCTCTGGGTTTCTTCTaGGTGACAGCTCTGACACTT | + |
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Preference number: 4 (lower is better) Translates to: PTGLEGLRRCLLTPSLGLPLGFF*VTALTL Trigger: AAGTGTCAGAGCTGTCACTCAGAAGAAACCCAGAGG...CAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTCGAGTCCCGTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS-3UTR GCA 90 bp | AGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGGAGGGGCTTAGACGGTaGCTGCTGACTCCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RAPQSVTRRTGIEGHRTVEGLRR*LLTPSL Trigger: GAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTC...CACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | AGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGTCCACACCCTGGCCATaGAGGCTGTGTGCAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RAPQSVTRRTGIEGHRTVSTPWP*RLCAGC Trigger: GCAGCCTGCACACAGCCTGCATGGCCAGGGTGTGGA...CACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | GGACTCGAGGGGCTTAGACGGTGCCTGCTGACTCCCAGCCTCGGCCTGCAGAGGAGCAGATTTAGCTTTTaGACATGGCGTCTGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: GLEGLRRCLLTPSLGLQRSRFSF*TWRLQS Trigger: TGACTGCAGACGCCATGTCCAAAAGCTAAATCTGCT...CCTCTGCAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAAGCCCCTCGAGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS-3UTR TCA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGATTAGACGGTGCCTGCTaGCTCCCAGCCTCGGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: VICSRAPQSVTRRTGIEGLDGAC*LPASAC Trigger: GCAGGCCGAGGCTGGGAGTCAGCAGGCACCGTCTAA...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | TCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACATTCCTCTTCCTGGGTTaGGCTGGACTGCTTGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: SRAPQSVTRRTGIEGHRTFLFLG*AGLLGR Trigger: GCGGCCAAGCAGTCCAGCCCAACCCAGGAAGAGGAA...TGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR TCA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGATGGCAGGGGCTCTGCTaGAGTGGCCTTCCACTGGAG | + |
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Preference number: 4 (lower is better) Translates to: VICSRAPQSVTRRTGIEGWQGLC*SGLPLE Trigger: CTCCAGTGGAAGGCCACTTCAGCAGAGCCCCTGCCA...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | AGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGCCGAGCTCTCTGGTGTaGTTCGCAGTACTGAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: RAPQSVTRRTGIEGHRTVPSSLV*FAVLRA Trigger: TGCCCTCAGTACTGCGAACCACACCAGAGAGCTCGG...CACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | GCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGAAGGGGGCTCTGCTGAAGTaGCCTTCCACTGGAGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: APQSVTRRTGIEGHRTVKGALLK*PSTGVL Trigger: CAAGACTCCAGTGGAAGGCCACTTCAGCAGAGCCCC...CTTCACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | TGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGCTCCCAGCCTCGGCCTaGAGAGGGCCTGCATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: WVICSRAPQSVTRRTGIELPASA*RGPAFS Trigger: AGAAAATGCAGGCCCTCTGCAGGCCGAGGCTGGGAG...CTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | TTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGGCCATGCAGGCTGTGTaGAGGCTGCCCTGTGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LLLGYLFQSTPVCDKEDWAMQAV*RLPCAL Trigger: CAGCGCACAGGGCAGCCTGCACACAGCCTGCATGGC...CCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | AGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGCCTCTGTCCAGCTCCTaGTCCTCGCAGCCCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: RHVYCWVICSRAPQSVTRPLSSS*SSQPLS Trigger: GGACAAGGGCTGCGAGGACCAGGAGCTGGACAGAGG...CCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGAGGTCAGCTAGCATGGTaGCCTCCTGCAGAGGACTTG | + |
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Preference number: 4 (lower is better) Translates to: VICSRAPQSVTRRTGIEGGQLAW*PPAEDL Trigger: CAAGTCCTCTGCAGGAGGCCACCATGCTAGCTGACC...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR TCA 90 bp | TGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGGCTGCCCTGTGCGCTaGTTCCATTTCCTCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: CWVICSRAPQSVTRRTGIGCPVR*FHFLFL Trigger: CAGGAAGAGGAAATGGAATCAGCGCACAGGGCAGCC...AATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR TCA 90 bp | GCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGAAGGGTTTCTCATCCACTTaGGGACTATTTCCAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: APQSVTRRTGIEGHRTVKGFSST*GLFPGA Trigger: GGCACCTGGAAATAGTCCTCAAGTGGATGAGAAACC...CTTCACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | CAGCCTCGGCCTGCAGAGGGCCTGCATTTTCTTCTTCACTGCCATTTACAGCTTTTTGGACATGGCGTCTaGAGTCAGCACCAGAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: QPRPAEGLHFLLHCHLQLFGHGV*SQHQSL Trigger: AAGGCTCTGGTGCTGACTGCAGACGCCATGTCCAAA...AAGCTGTAAATGGCAGTGAAGAAGAAAATGCAGGCCCTCTGCAGGCCGAGGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS-3UTR GCA 90 bp | TGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGTGCAGGCTGCCCTGTaGGCTGATTCCATTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: WVICSRAPQSVTRRTGIEVQAAL*ADSISS Trigger: AGAGGAAATGGAATCAGCGCACAGGGCAGCCTGCAC...CTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | AGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGGTTGTAAAGAGGTTGTaGAGTTGCAAGGGTGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: RAPQSVTRRTGIEGHRTVVVKRL*SCKGGA Trigger: GGCTCCACCCTTGCAACTGCACAACCTCTTTACAAC...CACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | CTGACTCCCAGCCTCGGCCTGCAGAGGGCCTGCATTTTCTTCTTCACTGCCATTTTTAGCTTTTGGACATaGCGTCTGCAGTCAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: LTPSLGLQRACIFFFTAIFSFWT*RLQSAP Trigger: TGGTGCTGACTGCAGACGCCATGTCCAAAAGCTAAA...AATGGCAGTGAAGAAGAAAATGCAGGCCCTCTGCAGGCCGAGGCTGGGAGTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS-3UTR CCA 90 bp | TGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTACACTGTCCACACCCTaGCCATGCAGGCTGTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: CWVICSRAPQSVTRRTGITLSTP*PCRLCA Trigger: TGCACACAGCCTGCATGGCCAGGGTGTGGACAGTGT...AATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | TGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGTTTGGACATGGCGTCTaGAGTCAGCACCAGAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: WVICSRAPQSVTRRTGIEFGHGV*SQHQSL Trigger: AAGGCTCTGGTGCTGACTGCAGACGCCATGTCCAAA...CTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | CAGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGGGCTGGTGCCTTGCTaGTCTGTTCCAAACAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: QARLLLGYLFQSTPVCDKGLVPC*SVPNRP Trigger: TGGCCTGTTTGGAACAGAGCAGCAAGGCACCAGCCC...CTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | AGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGGCAGGGCTGGTGCCTTaGTGCTCTGTTCCAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: RHVYCWVICSRAPQSVTRAGLVP*CSVPNR Trigger: CCTGTTTGGAACAGAGCAGCAAGGCACCAGCCCTGC...CCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | TCCCTCTGTCCAGCTCCTGGTCCTCGCAGCCCTTGTCCAGATACTTCAACCAACCAAACCCTTCTTGGCTaGCATAAATCCTTTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SLCPAPGPRSPCPDTSTNQTLLG*HKSFQG Trigger: ACCCTGAAAGGATTTATGGCAGCCAAGAAGGGTTTG...GTTGGTTGAAGTATCTGGACAAGGGCTGCGAGGACCAGGAGCTGGACAGAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS-3UTR CCA 90 bp | AGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGAGGCCAGTGGAGTCCTaGTGTTCAAAGTTGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: RAPQSVTRRTGIEGHRTVRPVES*CSKLSS Trigger: TGAAGACAACTTTGAACACCAGGACTCCACTGGCCT...CACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGAAGGTCTGTCCAGTTGTaGGGTGGTAGTGTGAATGGC | + |
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Preference number: 4 (lower is better) Translates to: VICSRAPQSVTRRTGIEGRSVQL*GGSVNG Trigger: GCCATTCACACTACCACCCCACAACTGGACAGACCT...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | AGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGGGCCTGCAGAGGGCCTaGATTTTCTTCTTCACTGCC | + |
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Preference number: 4 (lower is better) Translates to: RHVYCWVICSRAPQSVTRGLQRA*IFFFTA Trigger: GGCAGTGAAGAAGAAAATGCAGGCCCTCTGCAGGCC...CCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | TGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTTGCCAGGAGAAACCGTaGCCATTTAGAAGATGGGGC | + |
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Preference number: 4 (lower is better) Translates to: CWVICSRAPQSVTRRTGICQEKP*PFRRWG Trigger: GCCCCATCTTCTAAATGGGCACGGTTTCTCCTGGCA...AATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR TCA 90 bp | AGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGCCGCTCAGCACTGGTTaGAAGCTGTGTCTTAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RHVYCWVICSRAPQSVTRPLSTG*KLCLKS Trigger: GCTCTTAAGACACAGCTTTCAACCAGTGCTGAGCGG...CCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | CCAGCCTCGGCCTGCAGAGGGCCTGCATTTTCTTCTTCACTGCCATTTACAGCTTCTGACACTTGTCCTTaGAGCAGATTTAGCTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: PASACRGPAFSSSLPFTASDTCP*SRFSFW Trigger: CCAAAAGCTAAATCTGCTGCAAGGACAAGTGTCAGA...AGCTGTAAATGGCAGTGAAGAAGAAAATGCAGGCCCTCTGCAGGCCGAGGCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS-3UTR GCA 90 bp | CAGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGAGCATGGTGGCCTCCTaGAGAGGACTTGGTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: QARLLLGYLFQSTPVCDKSMVAS*RGLGFS Trigger: TGAGAAACCAAGTCCTCTGCAGGAGGCCACCATGCT...CTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGATTTAGCTTTTGGACATaGCGTCTGCAGTCAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: VICSRAPQSVTRRTGIEGFSFWT*RLQSAP Trigger: TGGTGCTGACTGCAGACGCCATGTCCAAAAGCTAAA...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | TTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGTCCATTTCCTCTTCCTaGGTTGGGCTGGACTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LLLGYLFQSTPVCDKEDWSISSS*VGLDCL Trigger: CAAGCAGTCCAGCCCAACCCAGGAAGAGGAAATGGA...CCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | GTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTAAGAGGTTGTGCAGTTaGAAGGGTGGAGCCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: VYCWVICSRAPQSVTRRTKRLCS*KGGAFW Trigger: CCAGAAGGCTCCACCCTTGCAACTGCACAACCTCTT...AGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | CGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACCTCCTGCAGAGGACTTaGTTTCTCATCCACTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RLLLGYLFQSTPVCDKEDLLQRT*FLIHLR Trigger: CCTCAAGTGGATGAGAAACCAAGTCCTCTGCAGGAG...GTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR GCA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGATCTGACACTTGTCCTTaGAGCAGATTTAGCTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: VICSRAPQSVTRRTGIEGSDTCP*SRFSFW Trigger: CCAAAAGCTAAATCTGCTGCAAGGACAAGTGTCAGA...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | CAGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGAGCAGATTTAGCTTTTaGACATGGCGTCTGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: QARLLLGYLFQSTPVCDKSRFSF*TWRLQS Trigger: TGACTGCAGACGCCATGTCCAAAAGCTAAATCTGCT...CTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CCA 90 bp | TATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCTGCCCATTTAGAAGATaGGGCATTAACTTGTGTAAC | + |
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Preference number: 4 (lower is better) Translates to: YCWVICSRAPQSVTRRTGCPFRR*GINLCN Trigger: GTTACACAAGTTAATGCCCCATCTTCTAAATGGGCA...GCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 90 bp | CAAGGGTGGAGCCTTCTGGGTCCCTTGAGCCAAAGGCCTACCATCTaGTCGAGGAGTCCCCATGTCCCTTGGCTGCTCTCGGGTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: QGWSLLGPLSQRPTI*SRSPHVPWLLSGLP Trigger: AGGAAGACCCGAGAGCAGCCAAGGGACATGGGGACTCCTCGAGCAGATGGTAGGCCTTTGGCTCAAGGGACCCAGAAGGCTCCACCCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 90 bp | GCCAAAGGCCTACCATCTGCTCGAGGAGTCCCCATGTCCCTTGGCTaGTCTCGGGTCTTCCTGTCAGGTCTGTCCAGTTGTGGGGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: AKGLPSARGVPMSLG*SRVFLSGLSSCGVV Trigger: TACCACCCCACAACTGGACAGACCTGACAGGAAGACCCGAGAGCAGCCAAGGGACATGGGGACTCCTCGAGCAGATGGTAGGCCTTTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 90 bp | GGCTGTGTGCAGGCTGCCCTGTGCGCTGATTCCATTTCCTCTTCCTaGGTTGGGCTGGACTGCTTGGCCGCTCAGCACTGGTTGAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: GCVQAALCADSISSS*VGLDCLAAQHWLKA Trigger: AGCTTTCAACCAGTGCTGAGCGGCCAAGCAGTCCAGCCCAACCCAGGAAGAGGAAATGGAATCAGCGCACAGGGCAGCCTGCACACAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 90 bp | GTCCCTTGGCTGCTCTCGGGTCTTCCTGTCAGGTCTGTCCAGTTGTaGGGTGGTAGTGTGAATGGCTTGAGGAGGCCTAATGGCAGGGGC | + |
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Preference number: 5 (lower is better) Translates to: VPWLLSGLPVRSVQL*GGSVNGLRRPNGRG Trigger: GCCCCTGCCATTAGGCCTCCTCAAGCCATTCACACTACCACCCCACAACTGGACAGACCTGACAGGAAGACCCGAGAGCAGCCAAGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS TCA 90 bp | CCTCTTCCTGGGTTGGGCTGGACTGCTTGGCCGCTCAGCACTGGTTaGAAGCTGTGTCTTAAGAGCTGGTCTCCCTCTGTCCAGCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: PLPGLGWTAWPLSTG*KLCLKSWSPSVQLL Trigger: CAGGAGCTGGACAGAGGGAGACCAGCTCTTAAGACACAGCTTTCAACCAGTGCTGAGCGGCCAAGCAGTCCAGCCCAACCCAGGAAGAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 90 bp | AGCTCTCTGGTGTGGTTCGCAGTACTGAGGGCAGGGCTGGTGCCTTaGTGCTCTGTTCCAAACAGGCCAGTGGAGTCCTGGTGTTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: SSLVWFAVLRAGLVP*CSVPNRPVESWCSK Trigger: CTTTGAACACCAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCAAGGCACCAGCCCTGCCCTCAGTACTGCGAACCACACCAGAGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 90 bp | TCTCTGGTGTGGTTCGCAGTACTGAGGGCAGGGCTGGTGCCTTGCTaGTCTGTTCCAAACAGGCCAGTGGAGTCCTGGTGTTCAAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: SLVWFAVLRAGLVPC*SVPNRPVESWCSKL Trigger: CAACTTTGAACACCAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCAAGGCACCAGCCCTGCCCTCAGTACTGCGAACCACACCAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CAA 90 bp | GTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGAGAGTCCCCATGTCCCTaGGCTGCTCTCGGGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: VICSRAPQSVTRRTGIEGESPCP*AALGSS Trigger: GGAAGACCCGAGAGCAGCCAAGGGACATGGGGACTC...TCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 90 bp | AAAGTTGTCTTCAACACTGTCCACACCCTGGCCATGCAGGCTGTGTaGAGGCTGCCCTGTGCGCTGATTCCATTTCCTCTTCCTGGGTTG | + |
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Preference number: 5 (lower is better) Translates to: KVVFNTVHTLAMQAV*RLPCALIPFPLPGL Trigger: CAACCCAGGAAGAGGAAATGGAATCAGCGCACAGGGCAGCCTGCACACAGCCTGCATGGCCAGGGTGTGGACAGTGTTGAAGACAACTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CAA 90 bp | TGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGACCTCCTGCAGAGGACTaGGTTTCTCATCCACTTGAG | + |
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Preference number: 5 (lower is better) Translates to: CSRAPQSVTRRTGIEGHRPPAED*VSHPLE Trigger: CTCAAGTGGATGAGAAACCAAGTCCTCTGCAGGAGG...TCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CAA 90 bp | CAGGCACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGTTTCCTCTTCCTGGGTaGGGCTGGACTGCTTGGCCG | + |
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Preference number: 5 (lower is better) Translates to: QARLLLGYLFQSTPVCDKFPLPG*GWTAWP Trigger: CGGCCAAGCAGTCCAGCCCAACCCAGGAAGAGGAAA...CTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CAA 90 bp | AGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTGAGGGACACAGAACAGTGCCTTCCACTGGAGTCTaGTTCTCAACAGTCCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: RAPQSVTRRTGIEGHRTVPSTGV*FSTVPC Trigger: ACAAGGGACTGTTGAGAACAAGACTCCAGTGGAAGG...CACTGTTCTGTGTCCCTCAATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CAA 90 bp | TTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATAGCCTTCTGGGTCCCTaGAGCCAAAGGCCTACCATC | + |
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Preference number: 5 (lower is better) Translates to: LLGYLFQSTPVCDKEDWHSLLGP*SQRPTI Trigger: GATGGTAGGCCTTTGGCTCAAGGGACCCAGAAGGCT...ATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS TCA 90 bp | GCTAGCATGGTGGCCTCCTGCAGAGGACTTGGTTTCTCATCCACTTaGGGACTATTTCCAGGTGCCAGGAGAAACCGTGCCCATTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: ASMVASCRGLGFSST*GLFPGARRNRAHLE Trigger: TTCTAAATGGGCACGGTTTCTCCTGGCACCTGGAAATAGTCCTCAAGTGGATGAGAAACCAAGTCCTCTGCAGGAGGCCACCATGCTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS TCA 90 bp | CCCGAACAAATGACTGCTTCTCTCCACAAGCCTTGCATGTCCATTTaGGACTCTTCTTCACCTGATGCGCCTGAAAGATGTGGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PEQMTASLHKPCMSI*DSSSPDAPERCGSC Trigger: GCAGCTGCCACATCTTTCAGGCGCATCAGGTGAAGAAGAGTCTCAAATGGACATGCAAGGCTTGTGGAGAGAAGCAGTCATTTGTTCGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020647.10 ENSMUST00000123164.2 |
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| CDS GCA 90 bp | CTGACACTTGTCCTTGCAGCAGATTTAGCTTTTGGACATGGCGTCTaGAGTCAGCACCAGAGCCTTCACCGTAAGCCCGAACAAATGACT | + |
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Preference number: 5 (lower is better) Translates to: LTLVLAADLAFGHGV*SQHQSLHRKPEQMT Trigger: AGTCATTTGTTCGGGCTTACGGTGAAGGCTCTGGTGCTGACTGCAGACGCCATGTCCAAAAGCTAAATCTGCTGCAAGGACAAGTGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020647.10 ENSMUST00000123164.2 |
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| CDS-3UTR CAA 90 bp | CACGTTTATTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGCCGGTTGTAAAGAGGTaGTGCAGTTGCAAGGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: HVYCWVICSRAPQSVTRRPVVKR*CSCKGG Trigger: TCCACCCTTGCAACTGCACAACCTCTTTACAACCGG...CCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAATAAACGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS-3UTR CAA 90 bp | TTGTTGGGTTATTTGTTCCAGAGCACCCCAGTCTGTGACAAGGAGGACTGGCATTCCTGGTGTTCAAAGTaGTCTTCAACACTGTCCACA | + |
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Preference number: 5 (lower is better) Translates to: LLGYLFQSTPVCDKEDWHSWCSK*SSTLST Trigger: TGTGGACAGTGTTGAAGACAACTTTGAACACCAGGA...ATGCCAGTCCTCCTTGTCACAGACTGGGGTGCTCTGGAACAAATAACCCAACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS TCA 90 bp | AAAAATGTCTGCCTCTGTAGAAATAATCCACCTCTGGGTTTCTTCTaGGTGACAGCTCTGACACTTGTCCTTGCAGCAGATTTAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: KNVCLCRNNPPLGFF*VTALTLVLAADLAF Trigger: AAAAGCTAAATCTGCTGCAAGGACAAGTGTCAGAGCTGTCACTCAGAAGAAACCCAGAGGTGGATTATTTCTACAGAGGCAGACATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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| CDS CCA 72 bp | CAGGCTGCCCTGTGCGCTGATTCCATTTCCTCTTCCTaGGTTGGGCTGGACTGCTTGGCCGCTCAGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: QAALCADSISSS*VGLDCLAAQHW Trigger: CCAGTGCTGAGCGGCCAAGCAGTCCAGCCCAACCCAGGAAGAGGAAATGGAATCAGCGCACAGGGCAGCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | GGTCTCCCTCTGTCCAGCTCCTGGTCCTCGCAGCCCTaGTCCAGATACTTCAACCAACGGGACTCGAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: GLPLSSSWSSQP*SRYFNQRDSRG Trigger: GCCCCTCGAGTCCCGTTGGTTGAAGTATCTGGACAAGGGCTGCGAGGACCAGGAGCTGGACAGAGGGAGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | GGTGTGGTTCGCAGTACTGAGGGCAGGGCTGGTGCCTaGCTGCTCTGTTCCAAACAGGCCAGTGGAGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: GVVRSTEGRAGA*LLCSKQASGVL Trigger: CAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCAAGGCACCAGCCCTGCCCTCAGTACTGCGAACCACACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 72 bp | TGGTTCGCAGTACTGAGGGCAGGGCTGGTGCCTTGCTaGTCTGTTCCAAACAGGCCAGTGGAGTCCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: WFAVLRAGLVPC*SVPNRPVESWC Trigger: ACACCAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCAAGGCACCAGCCCTGCCCTCAGTACTGCGAACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | AAGGCCTACCATCTGCTCGAGGAGTCCCCATGTCCCTaGGCTGCTCTCGGGTCTTCCTGTCAGGTCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: KAYHLLEESPCP*AALGSSCQVCP Trigger: TGGACAGACCTGACAGGAAGACCCGAGAGCAGCCAAGGGACATGGGGACTCCTCGAGCAGATGGTAGGCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | GTTGTGCAGTTGCAAGGGTGGAGCCTTCTGGGTCCCTaGAGCCAAAGGCCTACCATCTGCTCGAGGAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VVQLQGWSLLGP*SQRPTICSRSP Trigger: GGGACTCCTCGAGCAGATGGTAGGCCTTTGGCTCAAGGGACCCAGAAGGCTCCACCCTTGCAACTGCACAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 72 bp | TGGTGTTCAAAGTTGTCTTCAACACTGTCCACACCCTaGCCATGCAGGCTGTGTGCAGGCTGCCCTGTGCGC | + |
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Preference number: 6 (lower is better) Translates to: WCSKLSSTLSTP*PCRLCAGCPVR Trigger: GCGCACAGGGCAGCCTGCACACAGCCTGCATGGCCAGGGTGTGGACAGTGTTGAAGACAACTTTGAACACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 72 bp | GGTAGTTTCCACCTAGGAAAACCGAGCTCTCTGGTGTaGTTCGCAGTACTGAGGGCAGGGCTGGTGCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: GSFHLGKPSSLV*FAVLRAGLVPC Trigger: GCAAGGCACCAGCCCTGCCCTCAGTACTGCGAACCACACCAGAGAGCTCGGTTTTCCTAGGTGGAAACTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 72 bp | CCTAATGGCAGGGGCTCTGCTGAAGTGGCCTTCCACTaGAGTCTTGTTCTCAACAGTCCCTTGTGCCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: PNGRGSAEVAFH*SLVLNSPLCQV Trigger: GACCTGGCACAAGGGACTGTTGAGAACAAGACTCCAGTGGAAGGCCACTTCAGCAGAGCCCCTGCCATTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 72 bp | CTCTCCGGTTGTAAAGAGGTTGTGCAGTTGCAAGGGTaGAGCCTTCTGGGTCCCTTGAGCCAAAGGCCTACC | + |
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Preference number: 6 (lower is better) Translates to: LSGCKEVVQLQG*SLLGPLSQRPT Trigger: GGTAGGCCTTTGGCTCAAGGGACCCAGAAGGCTCCACCCTTGCAACTGCACAACCTCTTTACAACCGGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | AGGTCTGTCCAGTTGTGGGGTGGTAGTGTGAATGGCTaGAGGAGGCCTAATGGCAGGGGCTCTGCTGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: RSVQLWGGSVNG*RRPNGRGSAEV Trigger: CACTTCAGCAGAGCCCCTGCCATTAGGCCTCCTCAAGCCATTCACACTACCACCCCACAACTGGACAGACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 72 bp | GCTGATTCCATTTCCTCTTCCTGGGTTGGGCTGGACTaGTTGGCCGCTCAGCACTGGTTGAAAGCTGTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: ADSISSSWVGLD*LAAQHWLKAVS Trigger: AGACACAGCTTTCAACCAGTGCTGAGCGGCCAAGCAGTCCAGCCCAACCCAGGAAGAGGAAATGGAATCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 72 bp | CTGCTCTCGGGTCTTCCTGTCAGGTCTGTCCAGTTGTaGGGTGGTAGTGTGAATGGCTTGAGGAGGCCTAAT | + |
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Preference number: 6 (lower is better) Translates to: LLSGLPVRSVQL*GGSVNGLRRPN Trigger: ATTAGGCCTCCTCAAGCCATTCACACTACCACCCCACAACTGGACAGACCTGACAGGAAGACCCGAGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | GGTGGCCTCCTGCAGAGGACTTGGTTTCTCATCCACTaGAGGACTATTTCCAGGTGCCAGGAGAAACCGTGC | + |
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Preference number: 6 (lower is better) Translates to: GGLLQRTWFLIH*RTISRCQEKPC Trigger: GCACGGTTTCTCCTGGCACCTGGAAATAGTCCTCAAGTGGATGAGAAACCAAGTCCTCTGCAGGAGGCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 90 bp | TGCTGCTCTGTTCCAAACAGGCCAGTGGAGTCCTGGTGTTCAAAGTaGTCTTCAACACTGTCCACACCCTGGCCATGCAGGCTGTGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: CCSVPNRPVESWCSK*SSTLSTPWPCRLCA Trigger: TGCACACAGCCTGCATGGCCAGGGTGTGGACAGTGTTGAAGACAACTTTGAACACCAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 90 bp | TCCCTTGTGCCAGGTCAGCTAGCATGGTGGCCTCCTGCAGAGGACTaGGTTTCTCATCCACTTGAGGACTATTTCCAGGTGCCAGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: SLVPGQLAWWPPAED*VSHPLEDYFQVPGE Trigger: TTCTCCTGGCACCTGGAAATAGTCCTCAAGTGGATGAGAAACCAAGTCCTCTGCAGGAGGCCACCATGCTAGCTGACCTGGCACAAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS GCA 72 bp | GTCCTTGCAGCAGATTTAGCTTTTGGACATGGCGTCTaGAGTCAGCACCAGAGCCTTCACCGTAAGCCCGAA | + |
|
Preference number: 6 (lower is better) Translates to: VLAADLAFGHGV*SQHQSLHRKPE Trigger: TTCGGGCTTACGGTGAAGGCTCTGGTGCTGACTGCAGACGCCATGTCCAAAAGCTAAATCTGCTGCAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020647.10 ENSMUST00000123164.2 |
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| CDS CCA 72 bp | TCTCAACAGTCCCTTGTGCCAGGTCAGCTAGCATGGTaGCCTCCTGCAGAGGACTTGGTTTCTCATCCACTT | + |
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Preference number: 6 (lower is better) Translates to: SQQSLVPGQLAW*PPAEDLVSHPL Trigger: AAGTGGATGAGAAACCAAGTCCTCTGCAGGAGGCCACCATGCTAGCTGACCTGGCACAAGGGACTGTTGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | GTTCCAAACAGGCCAGTGGAGTCCTGGTGTTCAAAGTaGTCTTCAACACTGTCCACACCCTGGCCATGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: VPNRPVESWCSK*SSTLSTPWPCR Trigger: CCTGCATGGCCAGGGTGTGGACAGTGTTGAAGACAACTTTGAACACCAGGACTCCACTGGCCTGTTTGGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | CCAGGTCAGCTAGCATGGTGGCCTCCTGCAGAGGACTaGGTTTCTCATCCACTTGAGGACTATTTCCAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: PGQLAWWPPAED*VSHPLEDYFQV Trigger: CACCTGGAAATAGTCCTCAAGTGGATGAGAAACCAAGTCCTCTGCAGGAGGCCACCATGCTAGCTGACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CCA 72 bp | CCTTGCTGCTCTGTTCCAAACAGGCCAGTGGAGTCCTaGTGTTCAAAGTTGTCTTCAACACTGTCCACACCC | + |
|
Preference number: 6 (lower is better) Translates to: PCCSVPNRPVES*CSKLSSTLSTP Trigger: GGGTGTGGACAGTGTTGAAGACAACTTTGAACACCAGGACTCCACTGGCCTGTTTGGAACAGAGCAGCAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS CAA 72 bp | AGGTCATCATCAAAGTCCTCTCCGGTTGTAAAGAGGTaGTGCAGTTGCAAGGGTGGAGCCTTCTGGGTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: RSSSKSSPVVKR*CSCKGGAFWVP Trigger: AGGGACCCAGAAGGCTCCACCCTTGCAACTGCACAACCTCTTTACAACCGGAGAGGACTTTGATGATGACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020647.10 |
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| CDS TCA 72 bp | ATGACTGCTTCTCTCCACAAGCCTTGCATGTCCATTTaGGACTCTTCTTCACCTGATGCGCCTGAAAGATGT | + |
|
Preference number: 6 (lower is better) Translates to: MTASLHKPCMSI*DSSSPDAPERC Trigger: ACATCTTTCAGGCGCATCAGGTGAAGAAGAGTCTCAAATGGACATGCAAGGCTTGTGGAGAGAAGCAGTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020647.10 ENSMUST00000123164.2 |
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| CDS TCA 72 bp | TGCCTCTGTAGAAATAATCCACCTCTGGGTTTCTTCTaGGTGACAGCTCTGACACTTGTCCTTGCAGCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: CLCRNNPPLGFF*VTALTLVLAAD Trigger: ATCTGCTGCAAGGACAAGTGTCAGAGCTGTCACTCAGAAGAAACCCAGAGGTGGATTATTTCTACAGAGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123164.2 |
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