RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029557

Ensembl transcript IDs: ENSMUST00000031536.8

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCGTGTGCGTGCACGCGCTCTCGCTGCTCTGGGGTCCCGGATGCTaGACTCAGACTGTCAGGCTTAGCAGCAATCCCCCTTTCCTCACT +
Preference number: 1 (lower is better)
Translates to: CVCVHALSLLWGPGC*TQTVRLSSNPPFLT
Trigger: AGTGAGGAAAGGGGGATTGCTGCTAAGCCTGACAGTCTGAGTGCAGCATCCGGGACCCCAGAGCAGCGAGAGCGCGTGCACGCACACGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 90 bp ACAACTCAGGCTACCTGCCAAGGGATGGCAGCACCCGCACAGGGCTaGGCCCTGCCACGTCAGTCACTCATCAATGTCTCCCTGGCTCAG +
Preference number: 1 (lower is better)
Translates to: TTQATCQGMAAPAQG*ALPRQSLINVSLAQ
Trigger: CTGAGCCAGGGAGACATTGATGAGTGACTGACGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGCCTGAGTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR TCA 90 bp CCCTGCCACGTCAGTCACTCATCAATGTCTCCCTGGCTCAGCCTGTaGGCCGATGGAGGAATTCCACAGTCAGATTCTTTCTTCCCAGAC +
Preference number: 1 (lower is better)
Translates to: PCHVSHSSMSPWLSL*ADGGIPQSDSFFPD
Trigger: GTCTGGGAAGAAAGAATCTGACTGTGGAATTCCTCCATCGGCTCACAGGCTGAGCCAGGGAGACATTGATGAGTGACTGACGTGGCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 90 bp CGTCAGTCACTCATCAATGTCTCCCTGGCTCAGCCTGTGAGCCGATaGAGGAATTCCACAGTCAGATTCTTTCTTCCCAGACAAATTGCC +
Preference number: 1 (lower is better)
Translates to: RQSLINVSLAQPVSR*RNSTVRFFLPRQIA
Trigger: GGCAATTTGTCTGGGAAGAAAGAATCTGACTGTGGAATTCCTCCATCGGCTCACAGGCTGAGCCAGGGAGACATTGATGAGTGACTGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 90 bp GCTTTGTTTTCAGCATTTAAAAGCCTTGGAAGGAAAGGGTTTCTTTaGCTCACTCATCCCAACCACAGTCCATCACTGAAGGAAATCAAA +
Preference number: 1 (lower is better)
Translates to: ALFSAFKSLGRKGFL*LTHPNHSPSLKEIK
Trigger: TTTGATTTCCTTCAGTGATGGACTGTGGTTGGGATGAGTGAGGCAAAGAAACCCTTTCCTTCCAAGGCTTTTAAATGCTGAAAACAAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR CCA 90 bp GTGGGAACCTGGAGGCAGCAGCAACTGGAGACGGGGAGTGGGGTATGGATGACTGCACCCGCACAGGGCTaGGCCCTGCCACGTCAGTCA +
Preference number: 2 (lower is better)
Translates to: VGTWRQQQLETGSGVWMTAPAQG*ALPRQS
Trigger: TGACTGACGTGGCAGGGCCCAGCCCTGTGCGGGTGC...AGTCATCCATACCCCACTCCCCGTCTCCAGTTGCTGCTGCCTCCAGGTTCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR TCA 90 bp AAAGTGGGTTCTCGGGGTGGGAACCTGGAGGCAGCAGCAACTGGAGACGGGGAGCCCTGGCTCAGCCTGTaGGCCGATGGAGGAATTCCA +
Preference number: 2 (lower is better)
Translates to: KVGSRGGNLEAAATGDGEPWLSL*ADGGIP
Trigger: TGGAATTCCTCCATCGGCTCACAGGCTGAGCCAGGG...CTCCCCGTCTCCAGTTGCTGCTGCCTCCAGGTTCCCACCCCGAGAACCCACTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR GCA 90 bp TGGAGGCAGCAGCAACTGGAGACGGGGAGTGGGGTATGGATGACTGGCTTGTTCACAACTCAGGCTACCTaGCAAGGGATGGCAGCACCC +
Preference number: 2 (lower is better)
Translates to: WRQQQLETGSGVWMTGLFTTQAT*QGMAAP
Trigger: GGGTGCTGCCATCCCTTGGCAGGTAGCCTGAGTTGT...GAACAAGCCAGTCATCCATACCCCACTCCCCGTCTCCAGTTGCTGCTGCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR GCA 90 bp TCAGGCTACCTGCCAAGGGATGGCAGCACCCGCACAGGGCTGGGCCCTGCCACGTCTTCCCAGACAAATTaGCAAAAACTAACAGTACCA +
Preference number: 2 (lower is better)
Translates to: SGYLPRDGSTRTGLGPATSSQTN*QKLTVP
Trigger: TGGTACTGTTAGTTTTTGGCAATTTGTCTGGGAAGA...CGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR GCA 90 bp TCCATCACTGAAGGAAATCAAAGTGGGTTCTCGGGGTGGGAACCTGGAGGCAGCAGAGGTGCCTTGGGGTaGTGGTCATATCCACAAGGC +
Preference number: 2 (lower is better)
Translates to: SITEGNQSGFSGWEPGGSRGALG*WSYPQG
Trigger: GCCTTGTGGATATGACCAGCACCCCAAGGCACCTCT...GCTGCCTCCAGGTTCCCACCCCGAGAACCCACTTTGATTTCCTTCAGTGATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR CCA 90 bp CTTAGCAGCAATCCCCCTTTCCTCACTGCGCCATGGCGCTGCCCATTCTTAGCAAAAGCAGAGGTGCCTTaGGGTGCTGGTCATATCCAC +
Preference number: 2 (lower is better)
Translates to: LSSNPPFLTAPWRCPFLAKAEVP*GAGHIH
Trigger: GTGGATATGACCAGCACCCCAAGGCACCTCTGCTTT...TGCTAAGAATGGGCAGCGCCATGGCGCAGTGAGGAAAGGGGGATTGCTGCTAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR TCA 90 bp AATCCCCCTTTCCTCACTGCGCCATGGCGCTGCCCATTCTTAGCACTTTTTCACATCCACAAGGCAGCTTaGATCCACGCTCCTCCGGAA +
Preference number: 2 (lower is better)
Translates to: NPPFLTAPWRCPFLALFHIHKAA*IHAPPE
Trigger: TTCCGGAGGAGCGTGGATTCAAGCTGCCTTGTGGAT...GTGAAAAAGTGCTAAGAATGGGCAGCGCCATGGCGCAGTGAGGAAAGGGGGATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR GCA 90 bp GCCTGTGAGCCGATGGAGGAATTCCACAGTCAGATTCTTTCTTCCCAGACAAATTGGGGTCCCGGATGCTaGACTCAGACTGTCAGGCTT +
Preference number: 2 (lower is better)
Translates to: ACEPMEEFHSQILSSQTNWGPGC*TQTVRL
Trigger: AAGCCTGACAGTCTGAGTGCAGCATCCGGGACCCCA...ATTTGTCTGGGAAGAAAGAATCTGACTGTGGAATTCCTCCATCGGCTCACAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp GCCAAGGGATGGCAGCACCCGCACAGGGCTGGGCCCTaGCACGTCAGTCACTCATCAATGTCTCCCTGGCTC +
Preference number: 3 (lower is better)
Translates to: AKGWQHPHRAGP*HVSHSSMSPWL
Trigger: GAGCCAGGGAGACATTGATGAGTGACTGACGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp GTGCACGCGCTCTCGCTGCTCTGGGGTCCCGGATGCTaGACTCAGACTGTCAGGCTTAGCAGCAATCCCCCT +
Preference number: 3 (lower is better)
Translates to: VHALSLLWGPGC*TQTVRLSSNPP
Trigger: AGGGGGATTGCTGCTAAGCCTGACAGTCTGAGTGCAGCATCCGGGACCCCAGAGCAGCGAGAGCGCGTGCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp TGCGTGCACGCGCTCTCGCTGCTCTGGGGTCCCGGATaGTGCACTCAGACTGTCAGGCTTAGCAGCAATCCC +
Preference number: 3 (lower is better)
Translates to: CVHALSLLWGPG*CTQTVRLSSNP
Trigger: GGGATTGCTGCTAAGCCTGACAGTCTGAGTGCAGCATCCGGGACCCCAGAGCAGCGAGAGCGCGTGCACGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp CTGCTCACCCCGCTTTCTCATACAACTCAGGCTACCTaGCAAGGGATGGCAGCACCCGCACAGGGCTGGGCC +
Preference number: 3 (lower is better)
Translates to: LLTPLSHTTQAT*QGMAAPAQGWA
Trigger: GGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGCCTGAGTTGTATGAGAAAGCGGGGTGAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 72 bp GCTACCTGCCAAGGGATGGCAGCACCCGCACAGGGCTaGGCCCTGCCACGTCAGTCACTCATCAATGTCTCC +
Preference number: 3 (lower is better)
Translates to: ATCQGMAAPAQG*ALPRQSLINVS
Trigger: GGAGACATTGATGAGTGACTGACGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 72 bp CGCTTTCTCATACAACTCAGGCTACCTGCCAAGGGATaGCAGCACCCGCACAGGGCTGGGCCCTGCCACGTC +
Preference number: 3 (lower is better)
Translates to: RFLIQLRLPAKG*QHPHRAGPCHV
Trigger: GACGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGCCTGAGTTGTATGAGAAAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 72 bp AGGCTTAGCAGCAATCCCCCTTTCCTCACTGCGCCATaGCGCTGCCCATTCTTAGCACTTTTTCACGGCCCT +
Preference number: 3 (lower is better)
Translates to: RLSSNPPFLTAP*RCPFLALFHGP
Trigger: AGGGCCGTGAAAAAGTGCTAAGAATGGGCAGCGCCATGGCGCAGTGAGGAAAGGGGGATTGCTGCTAAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp ACAGTACCAATATATCTGTTCATATTGTGTGCAGCCTaGGTGTGCGTGCACGCGCTCTCGCTGCTCTGGGGT +
Preference number: 3 (lower is better)
Translates to: TVPIYLFILCAA*VCVHALSLLWG
Trigger: ACCCCAGAGCAGCGAGAGCGCGTGCACGCACACGCAGGCTGCACACAATATGAACAGATATATTGGTACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR TCA 72 bp GTCAGTCACTCATCAATGTCTCCCTGGCTCAGCCTGTaGGCCGATGGAGGAATTCCACAGTCAGATTCTTTC +
Preference number: 3 (lower is better)
Translates to: VSHSSMSPWLSL*ADGGIPQSDSF
Trigger: GAAAGAATCTGACTGTGGAATTCCTCCATCGGCTCACAGGCTGAGCCAGGGAGACATTGATGAGTGACTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR TCA 72 bp TTCTTTGCCTCACTCATCCCAACCACAGTCCATCACTaGAGGAAATCAAAGTGGGTTCTCGGGGTGGGAACC +
Preference number: 3 (lower is better)
Translates to: FFASLIPTTVHH*RKSKWVLGVGT
Trigger: GGTTCCCACCCCGAGAACCCACTTTGATTTCCTTCAGTGATGGACTGTGGTTGGGATGAGTGAGGCAAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 72 bp GCTTATCTCTTTAAAAGCAGAGGTGCCTTGGGGTGCTaGTCATATCCACAAGGCAGCTTGAATCCACGCTCC +
Preference number: 3 (lower is better)
Translates to: AYLFKSRGALGC*SYPQGSLNPRS
Trigger: GGAGCGTGGATTCAAGCTGCCTTGTGGATATGACCAGCACCCCAAGGCACCTCTGCTTTTAAAGAGATAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CCA 72 bp CTCATCAATGTCTCCCTGGCTCAGCCTGTGAGCCGATaGAGGAATTCCACAGTCAGATTCTTTCTTCCCAGA +
Preference number: 3 (lower is better)
Translates to: LINVSLAQPVSR*RNSTVRFFLPR
Trigger: TCTGGGAAGAAAGAATCTGACTGTGGAATTCCTCCATCGGCTCACAGGCTGAGCCAGGGAGACATTGATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR-3UTR CAA 90 bp GCAACTGGAGACGGGGAGTGGGGTATGGATGACTGGCTTGTTCCTCAGTCCTGCACTTTTTCACGGCCCTaGAAAATATTTGCTTATCTC +
Preference number: 3 (lower is better)
Translates to: ATGDGEWGMDDWLVPQSCTFSRP*KIFAYL
Trigger: GAGATAAGCAAATATTTTCAAGGGCCGTGAAAAAGT...GCAGGACTGAGGAACAAGCCAGTCATCCATACCCCACTCCCCGTCTCCAGTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp TTTGCTTATCTCTTTAAAAGCAGAGGTGCCTTGGGGTaGTGGTCATATCCACAAGGCAGCTTGAATCCACGC +
Preference number: 3 (lower is better)
Translates to: FAYLFKSRGALG*WSYPQGSLNPR
Trigger: GCGTGGATTCAAGCTGCCTTGTGGATATGACCAGCACCCCAAGGCACCTCTGCTTTTAAAGAGATAAGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR GCA 72 bp TCAGCATTTAAAAGCCTTGGAAGGAAAGGGTTTCTTTaGCTCACTCATCCCAACCACAGTCCATCACTGAAG +
Preference number: 3 (lower is better)
Translates to: SAFKSLGRKGFL*LTHPNHSPSLK
Trigger: CTTCAGTGATGGACTGTGGTTGGGATGAGTGAGGCAAAGAAACCCTTTCCTTCCAAGGCTTTTAAATGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR TCA 72 bp TGGCGCTGCCCATTCTTAGCACTTTTTCACGGCCCTTaGAAATATTTGCTTATCTCTTTAAAAGCAGAGGTG +
Preference number: 3 (lower is better)
Translates to: WRCPFLALFHGP*KYLLISLKAEV
Trigger: CACCTCTGCTTTTAAAGAGATAAGCAAATATTTTCAAGGGCCGTGAAAAAGTGCTAAGAATGGGCAGCGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp TCAGGCTACCTGCCAAGGGATGGCAGCACCCGCACAGGGCTGGGCCCTGCCACGCCAGGCTCCCGGAGCTaGCCCGCAGTCCAGCACCCG +
Preference number: 4 (lower is better)
Translates to: SGYLPRDGSTRTGLGPATPGSRS*PAVQHP
Trigger: CGGGTGCTGGACTGCGGGGCAGCTCCGGGAGCCTGG...CGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGCCTGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR TCA 90 bp CTTAGCAGCAATCCCCCTTTCCTCACTGCGCCATGGCGCTGCCCATTCTTAGCACGCTGCACTGCCACCTaGCTCCAGGCTCCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: LSSNPPFLTAPWRCPFLARCTAT*LQAPGA
Trigger: AGCTCCGGGAGCCTGGAGTCAGGTGGCAGTGCAGCG...TGCTAAGAATGGGCAGCGCCATGGCGCAGTGAGGAAAGGGGGATTGCTGCTAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp TCAGGCTACCTGCCAAGGGATGGCAGCACCCGCACAGGGCTGGGCCCTGCCACGGTAACTCTCCACCTTTaGGGCCTTCACAAACGGATC +
Preference number: 4 (lower is better)
Translates to: SGYLPRDGSTRTGLGPATVTLHL*GLHKRI
Trigger: GATCCGTTTGTGAAGGCCGCAAAGGTGGAGAGTTAC...CGTGGCAGGGCCCAGCCCTGTGCGGGTGCTGCCATCCCTTGGCAGGTAGCCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp AAAGTGGGTTCTCGGGGTGGGAACCTGGAGGCAGCAGCAACTGGAGACGGGGAGATTGACGCGCTGCACTaGCACCTGACTCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: KVGSRGGNLEAAATGDGEIDALH*HLTPGS
Trigger: GGAGCCTGGAGTCAGGTGGCAGTGCAGCGCGTCAAT...CTCCCCGTCTCCAGTTGCTGCTGCCTCCAGGTTCCCACCCCGAGAACCCACTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR TCA 90 bp CAACTGGAGACGGGGAGTGGGGTATGGATGACTGGCTTGTTCCTCAGTCCTGCTCCTTTAGATGCCGCGTaGGCCACAGGTGCTCAGCGC +
Preference number: 4 (lower is better)
Translates to: QLETGSGVWMTGLFLSPAPLDAA*ATGAQR
Trigger: GCGCTGAGCACCTGTGGCTCACGCGGCATCTAAAGG...AGCAGGACTGAGGAACAAGCCAGTCATCCATACCCCACTCCCCGTCTCCAGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp CAGGGCTGGGCCCTGCCACGTCAGTCACTCATCAATGTCTCCCTGGCTCAGCCTCCGAAGACTCTTTCCTaGTGGCCTCCGGTTTCACCA +
Preference number: 4 (lower is better)
Translates to: QGWALPRQSLINVSLAQPPKTLS*WPPVSP
Trigger: TGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGG...AGGCTGAGCCAGGGAGACATTGATGAGTGACTGACGTGGCAGGGCCCAGCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
3UTR CAA 72 bp GGTGCCTTGGGGTGCTGGTCATATCCACAAGGCAGCTaGAATCCACGCTCCTCCGGAAGCACCCCCAGAATG +
Preference number: 4 (lower is better)
Translates to: GALGCWSYPQGS*NPRSSGSTPRM
Trigger: CATTCTGGGGGTGCTTCCGGAGGAGCGTGGATTCAAGCTGCCTTGTGGATATGACCAGCACCCCAAGGCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp TGGGCCCTGCCACGTCAGTCACTCATCAATGTCTCCCTGGCTCAGCCTGTGAGCCCCAGTGGCATTCGGTaGCATGTCACTCAGAATCAC +
Preference number: 4 (lower is better)
Translates to: WALPRQSLINVSLAQPVSPSGIR*HVTQNH
Trigger: GTGATTCTGAGTGACATGGCACCGAATGCCACTGGG...GCTCACAGGCTGAGCCAGGGAGACATTGATGAGTGACTGACGTGGCAGGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CCA 90 bp CAGGGCTGGGCCCTGCCACGTCAGTCACTCATCAATGTCTCCCTGGCTCAGCCTCATCTGCTCTCCTGCTaGGAAGCAGTTCTAGAATCT +
Preference number: 4 (lower is better)
Translates to: QGWALPRQSLINVSLAQPHLLSC*EAVLES
Trigger: AGATTCTAGAACTGCTTCCCAGCAGGAGAGCAGATG...AGGCTGAGCCAGGGAGACATTGATGAGTGACTGACGTGGCAGGGCCCAGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp TCACCCCGCTTTCTCATACAACTCAGGCTACCTGCCAAGGGATGGCAGCACCCGGTTTCACCACCCTTGTaGTCTGGAATTCCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SPRFLIQLRLPAKGWQHPVSPPL*SGIPGS
Trigger: TGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAAC...CGGGTGCTGCCATCCCTTGGCAGGTAGCCTGAGTTGTATGAGAAAGCGGGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp CCGGATGCTGCACTCAGACTGTCAGGCTTAGCAGCAATCCCCCTTTCCTCACTGACTCAGAATCACATCTaGTCTCCTGCTGGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: PDAALRLSGLAAIPLSSLTQNHI*SPAGKQ
Trigger: CTGCTTCCCAGCAGGAGAGCAGATGTGATTCTGAGT...CAGTGAGGAAAGGGGGATTGCTGCTAAGCCTGACAGTCTGAGTGCAGCATCCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR GCA 90 bp ACTGAAGGAAATCAAAGTGGGTTCTCGGGGTGGGAACCTGGAGGCAGCAGCAACTCACATCTGCTCTCCTaGTGGGAAGCAGTTCTAGAA +
Preference number: 4 (lower is better)
Translates to: TEGNQSGFSGWEPGGSSNSHLLS*WEAVLE
Trigger: TTCTAGAACTGCTTCCCAGCAGGAGAGCAGATGTGA...GTTGCTGCTGCCTCCAGGTTCCCACCCCGAGAACCCACTTTGATTTCCTTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CCA 90 bp CTTAGCAGCAATCCCCCTTTCCTCACTGCGCCATGGCGCTGCCCATTCTTAGCAAGTTCTAGAATCTTCTaGAAAGTTCTGGGGTCAGTC +
Preference number: 4 (lower is better)
Translates to: LSSNPPFLTAPWRCPFLASSRIF*KVLGSV
Trigger: GACTGACCCCAGAACTTTCCAGAAGATTCTAGAACT...TGCTAAGAATGGGCAGCGCCATGGCGCAGTGAGGAAAGGGGGATTGCTGCTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CCA 90 bp TTGCTTATCTCTTTAAAAGCAGAGGTGCCTTGGGGTGCTGGTCATATCCACAAGTCTTCTGGAAAGTTCTaGGGTCAGTCACATCAGCAG +
Preference number: 4 (lower is better)
Translates to: LLISLKAEVPWGAGHIHKSSGKF*GQSHQQ
Trigger: CTGCTGATGTGACTGACCCCAGAACTTTCCAGAAGA...CTTGTGGATATGACCAGCACCCCAAGGCACCTCTGCTTTTAAAGAGATAAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 90 bp GGCATTGACGCGCTGCACTGCCACCTGACTCCAGGCTCCCGGAGCTaGCCCGCAGTCCAGCACCCGGAGACCGGGCCTCAGGATCTGATG +
Preference number: 5 (lower is better)
Translates to: GIDALHCHLTPGSRS*PAVQHPETGPQDLM
Trigger: CATCAGATCCTGAGGCCCGGTCTCCGGGTGCTGGACTGCGGGGCAGCTCCGGGAGCCTGGAGTCAGGTGGCAGTGCAGCGCGTCAATGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 90 bp GAGCTGGAATCTGCGCCTGTGGCATTGACGCGCTGCACTGCCACCTaGCTCCAGGCTCCCGGAGCTGCCCCGCAGTCCAGCACCCGGAGA +
Preference number: 5 (lower is better)
Translates to: ELESAPVALTRCTAT*LQAPGAAPQSSTRR
Trigger: TCTCCGGGTGCTGGACTGCGGGGCAGCTCCGGGAGCCTGGAGTCAGGTGGCAGTGCAGCGCGTCAATGCCACAGGCGCAGATTCCAGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 90 bp TCTCCACCTTTGCGGCCTTCACAAACGGATCCTTTAGATGCCGCGTaGGCCACAGGTGCTCAGCGCCGGTCCGGCCCCTGTAGTGACACA +
Preference number: 5 (lower is better)
Translates to: SPPLRPSQTDPLDAA*ATGAQRRSGPCSDT
Trigger: TGTGTCACTACAGGGGCCGGACCGGCGCTGAGCACCTGTGGCTCACGCGGCATCTAAAGGATCCGTTTGTGAAGGCCGCAAAGGTGGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CAA 90 bp GGTCCCGGATGCTGCACTCAGACTGTCAGGCTTAGCAGCAATCCCCCTTTCCTCTTCATCTCCAGGAGTTaGAAGGCACTGCGGCAGCGG +
Preference number: 5 (lower is better)
Translates to: GPGCCTQTVRLSSNPPFLFISRS*KALRQR
Trigger: CCGCTGCCGCAGTGCCTTCAAACTCCTGGAGATGAA...GAGGAAAGGGGGATTGCTGCTAAGCCTGACAGTCTGAGTGCAGCATCCGGGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 90 bp CACGGTACTGGGTGGCTAACAGGTACACCTCCGAAGACTCTTTCCTaGTGGCCTCCGGTTTCACCACCCTTGTGCTCTGGAATTCCTGGG +
Preference number: 5 (lower is better)
Translates to: HGTGWLTGTPPKTLS*WPPVSPPLCSGIPG
Trigger: CCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGGAGGTGTACCTGTTAGCCACCCAGTACCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 90 bp TTCCTGCTGGCCTCCGGTTTCACCACCCTTGTGCTCTGGAATTCCTaGGTCAGTCTCTTCTGCAGCAGGTGGCTTTTACTTCCGGCCCAG +
Preference number: 5 (lower is better)
Translates to: FLLASGFTTLVLWNS*VSLFCSRWLLLPAQ
Trigger: CTGGGCCGGAAGTAAAAGCCACCTGCTGCAGAAGAGACTGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CAA 90 bp CCGGATGCTGCACTCAGACTGTCAGGCTTAGCAGCAATCCCCCTTTCCTCACTGCCGGTTTCACCACCCTaGTGCTCTGGAATTCCTGGG +
Preference number: 5 (lower is better)
Translates to: PDAALRLSGLAAIPLSSLPVSPP*CSGIPG
Trigger: CCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGG...CAGTGAGGAAAGGGGGATTGCTGCTAAGCCTGACAGTCTGAGTGCAGCATCCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 90 bp GACCGGGCCTCAGGATCTGATGCTTCTCATTCATCTCCAGGAGTTTaGAGGCACTGCGGCAGCGGTAACTCTCCACCTTTGCGGCCTTCA +
Preference number: 5 (lower is better)
Translates to: DRASGSDASHSSPGV*RHCGSGNSPPLRPS
Trigger: TGAAGGCCGCAAAGGTGGAGAGTTACCGCTGCCGCAGTGCCTTCAAACTCCTGGAGATGAATGAGAAGCATCAGATCCTGAGGCCCGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 90 bp CCTCCGAAGACTCTTTCCTGCTGGCCTCCGGTTTCACCACCCTTGTaGTCTGGAATTCCTGGGTCAGTCTCTTCTGCAGCAGGTGGCTTT +
Preference number: 5 (lower is better)
Translates to: PPKTLSCWPPVSPPL*SGIPGSVSSAAGGF
Trigger: AAAGCCACCTGCTGCAGAAGAGACTGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 90 bp GGTACTGGGTGGCTAACAGGTACACCTCCGAAGACTCTTTCCTGCTaGCCTCCGGTTTCACCACCCTTGTGCTCTGGAATTCCTGGGTCA +
Preference number: 5 (lower is better)
Translates to: GTGWLTGTPPKTLSC*PPVSPPLCSGIPGS
Trigger: TGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGGAGGTGTACCTGTTAGCCACCCAGTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CAA 90 bp TGGAGGCAGCAGCAACTGGAGACGGGGAGTGGGGTATGGATGACTGGCTTGTTCGGTAACTCTCCACCTTaGCGGCCTTCACAAACGGAT +
Preference number: 5 (lower is better)
Translates to: WRQQQLETGSGVWMTGLFGNSPP*RPSQTD
Trigger: ATCCGTTTGTGAAGGCCGCAAAGGTGGAGAGTTACC...GAACAAGCCAGTCATCCATACCCCACTCCCCGTCTCCAGTTGCTGCTGCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 90 bp CTTTTACTTCCGGCCCAGGTTTTACACAGCAGTGTCCCTCCGGGATaGAGGATGTCCACAGCCATGTCCACAAGGGTAAGGCACAAGCTG +
Preference number: 5 (lower is better)
Translates to: LLLPAQVLHSSVPPG*RMSTAMSTRVRHKL
Trigger: CAGCTTGTGCCTTACCCTTGTGGACATGGCTGTGGACATCCTGCATCCCGGAGGGACACTGCTGTGTAAAACCTGGGCCGGAAGTAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 90 bp ACCCTTGTGCTCTGGAATTCCTGGGTCAGTCTCTTCTGCAGCAGGTaGCTTTTACTTCCGGCCCAGGTTTTACACAGCAGTGTCCCTCCG +
Preference number: 5 (lower is better)
Translates to: TLVLWNSWVSLFCSR*LLLPAQVLHSSVPP
Trigger: CGGAGGGACACTGCTGTGTAAAACCTGGGCCGGAAGTAAAAGCCACCTGCTGCAGAAGAGACTGACCCAGGAATTCCAGAGCACAAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 90 bp GATGAGCTTATCGTGATCGAGGTCTCTGATCCCAGTGGCATTCGGTaGCATGTCACTCAGAATCACATCTGCTCTCCTGCTGGGAAGCAG +
Preference number: 5 (lower is better)
Translates to: DELIVIEVSDPSGIR*HVTQNHICSPAGKQ
Trigger: CTGCTTCCCAGCAGGAGAGCAGATGTGATTCTGAGTGACATGGCACCGAATGCCACTGGGATCAGAGACCTCGATCACGATAAGCTCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 90 bp GAAGACTCTTTCCTGCTGGCCTCCGGTTTCACCACCCTTGTGCTCTaGAATTCCTGGGTCAGTCTCTTCTGCAGCAGGTGGCTTTTACTT +
Preference number: 5 (lower is better)
Translates to: EDSFLLASGFTTLVL*NSWVSLFCSRWLLL
Trigger: AAGTAAAAGCCACCTGCTGCAGAAGAGACTGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 90 bp ACATCAGCAGGGCATAGAAAAGTTGCTCCCGCCAAAGGGAATATGTaGAGGAGATCGACCCCAAGCACAAAGCCCACAGGAGAGCTGGAA +
Preference number: 5 (lower is better)
Translates to: TSAGHRKVAPAKGNM*RRSTPSTKPTGELE
Trigger: TTCCAGCTCTCCTGTGGGCTTTGTGCTTGGGGTCGATCTCCTTCACATATTCCCTTTGGCGGGAGCAACTTTTCTATGCCCTGCTGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS-3UTR CAA 90 bp AATCCCCCTTTCCTCACTGCGCCATGGCGCTGCCCATTCTTAGCACTTTTTCACCAGGGCATAGAAAAGTaGCTCCCGCCAAAGGGAATA +
Preference number: 5 (lower is better)
Translates to: NPPFLTAPWRCPFLALFHQGIEK*LPPKGI
Trigger: TATTCCCTTTGGCGGGAGCAACTTTTCTATGCCCTG...GTGAAAAAGTGCTAAGAATGGGCAGCGCCATGGCGCAGTGAGGAAAGGGGGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 90 bp TGGCATTCGGTGCCATGTCACTCAGAATCACATCTGCTCTCCTGCTaGGAAGCAGTTCTAGAATCTTCTGGAAAGTTCTGGGGTCAGTCA +
Preference number: 5 (lower is better)
Translates to: WHSVPCHSESHLLSC*EAVLESSGKFWGQS
Trigger: TGACTGACCCCAGAACTTTCCAGAAGATTCTAGAACTGCTTCCCAGCAGGAGAGCAGATGTGATTCTGAGTGACATGGCACCGAATGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 90 bp AGAATCACATCTGCTCTCCTGCTGGGAAGCAGTTCTAGAATCTTCTaGAAAGTTCTGGGGTCAGTCACATCAGCAGGGCATAGAAAAGTT +
Preference number: 5 (lower is better)
Translates to: RITSALLLGSSSRIF*KVLGSVTSAGHRKV
Trigger: AACTTTTCTATGCCCTGCTGATGTGACTGACCCCAGAACTTTCCAGAAGATTCTAGAACTGCTTCCCAGCAGGAGAGCAGATGTGATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 72 bp AGCCCACAGGAGAGCTGGAATCTGCGCCTGTGGCATTaGCGCGCTGCACTGCCACCTGACTCCAGGCTCCCG +
Preference number: 6 (lower is better)
Translates to: SPQESWNLRLWH*RAALPPDSRLP
Trigger: CGGGAGCCTGGAGTCAGGTGGCAGTGCAGCGCGTCAATGCCACAGGCGCAGATTCCAGCTCTCCTGTGGGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 72 bp TTGCGGCCTTCACAAACGGATCCTTTAGATGCCGCGTaGGCCACAGGTGCTCAGCGCCGGTCCGGCCCCTGT +
Preference number: 6 (lower is better)
Translates to: LRPSQTDPLDAA*ATGAQRRSGPC
Trigger: ACAGGGGCCGGACCGGCGCTGAGCACCTGTGGCTCACGCGGCATCTAAAGGATCCGTTTGTGAAGGCCGCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 72 bp TCCACCTTTGCGGCCTTCACAAACGGATCCTTTAGATaGCGCGTGAGCCACAGGTGCTCAGCGCCGGTCCGG +
Preference number: 6 (lower is better)
Translates to: STFAAFTNGSFR*RVSHRCSAPVR
Trigger: CCGGACCGGCGCTGAGCACCTGTGGCTCACGCGGCATCTAAAGGATCCGTTTGTGAAGGCCGCAAAGGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 72 bp GACCCCAAGCACAAAGCCCACAGGAGAGCTGGAATCTaGGCCTGTGGCATTGACGCGCTGCACTGCCACCTG +
Preference number: 6 (lower is better)
Translates to: DPKHKAHRRAGI*ACGIDALHCHL
Trigger: CAGGTGGCAGTGCAGCGCGTCAATGCCACAGGCGCAGATTCCAGCTCTCCTGTGGGCTTTGTGCTTGGGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 72 bp CCGGCCCAGGTTTTACACAGCAGTGTCCCTCCGGGATaGAGGATGTCCACAGCCATGTCCACAAGGGTAAGG +
Preference number: 6 (lower is better)
Translates to: PAQVLHSSVPPG*RMSTAMSTRVR
Trigger: CCTTACCCTTGTGGACATGGCTGTGGACATCCTGCATCCCGGAGGGACACTGCTGTGTAAAACCTGGGCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CAA 90 bp ACACCTCCGAAGACTCTTTCCTGCTGGCCTCCGGTTTCACCACCCTaGTGCTCTGGAATTCCTGGGTCAGTCTCTTCTGCAGCAGGTGGC +
Preference number: 6 (lower is better)
Translates to: TPPKTLSCWPPVSPP*CSGIPGSVSSAAGG
Trigger: GCCACCTGCTGCAGAAGAGACTGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGGAGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 72 bp GGGTGGCTAACAGGTACACCTCCGAAGACTCTTTCCTaGTGGCCTCCGGTTTCACCACCCTTGTGCTCTGGA +
Preference number: 6 (lower is better)
Translates to: GWLTGTPPKTLS*WPPVSPPLCSG
Trigger: TCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGGAGGTGTACCTGTTAGCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 72 bp ACTCTTTCCTGCTGGCCTCCGGTTTCACCACCCTTGTaGTCTGGAATTCCTGGGTCAGTCTCTTCTGCAGCA +
Preference number: 6 (lower is better)
Translates to: TLSCWPPVSPPL*SGIPGSVSSAA
Trigger: TGCTGCAGAAGAGACTGACCCAGGAATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 72 bp TGGCTAACAGGTACACCTCCGAAGACTCTTTCCTGCTaGCCTCCGGTTTCACCACCCTTGTGCTCTGGAATT +
Preference number: 6 (lower is better)
Translates to: WLTGTPPKTLSC*PPVSPPLCSGI
Trigger: AATTCCAGAGCACAAGGGTGGTGAAACCGGAGGCCAGCAGGAAAGAGTCTTCGGAGGTGTACCTGTTAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 72 bp GGGCATAGAAAAGTTGCTCCCGCCAAAGGGAATATGTaGAGGAGATCGACCCCAAGCACAAAGCCCACAGGA +
Preference number: 6 (lower is better)
Translates to: GHRKVAPAKGNM*RRSTPSTKPTG
Trigger: TCCTGTGGGCTTTGTGCTTGGGGTCGATCTCCTTCACATATTCCCTTTGGCGGGAGCAACTTTTCTATGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS GCA 72 bp ATCGTGATCGAGGTCTCTGATCCCAGTGGCATTCGGTaGCATGTCACTCAGAATCACATCTGCTCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: IVIEVSDPSGIR*HVTQNHICSPA
Trigger: AGCAGGAGAGCAGATGTGATTCTGAGTGACATGGCACCGAATGCCACTGGGATCAGAGACCTCGATCACGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS TCA 72 bp TCAGGATCTGATGCTTCTCATTCATCTCCAGGAGTTTaGAGGCACTGCGGCAGCGGTAACTCTCCACCTTTG +
Preference number: 6 (lower is better)
Translates to: SGSDASHSSPGV*RHCGSGNSPPL
Trigger: CAAAGGTGGAGAGTTACCGCTGCCGCAGTGCCTTCAAACTCCTGGAGATGAATGAGAAGCATCAGATCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CAA 72 bp TTCTGGGGTCAGTCACATCAGCAGGGCATAGAAAAGTaGCTCCCGCCAAAGGGAATATGTGAAGGAGATCGA +
Preference number: 6 (lower is better)
Translates to: FWGQSHQQGIEK*LPPKGICEGDR
Trigger: TCGATCTCCTTCACATATTCCCTTTGGCGGGAGCAACTTTTCTATGCCCTGCTGATGTGACTGACCCCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8
CDS CCA 72 bp GTGCCATGTCACTCAGAATCACATCTGCTCTCCTGCTaGGAAGCAGTTCTAGAATCTTCTGGAAAGTTCTGG +
Preference number: 6 (lower is better)
Translates to: VPCHSESHLLSC*EAVLESSGKFW
Trigger: CCAGAACTTTCCAGAAGATTCTAGAACTGCTTCCCAGCAGGAGAGCAGATGTGATTCTGAGTGACATGGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031536.8