RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018405

Ensembl transcript IDs: ENSMUST00000018549.8

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGTCAGCTTCCCTCTACAAACTCACCCTCACATCCCACACACCCTaGGCTGGACTGCCTTGCTCCTCCGCATGCCAAGAACAGCCCCCT +
Preference number: 1 (lower is better)
Translates to: QSASLYKLTLTSHTP*AGLPCSSACQEQPP
Trigger: AGGGGGCTGTTCTTGGCATGCGGAGGAGCAAGGCAGTCCAGCGCAGGGTGTGTGGGATGTGAGGGTGAGTTTGTAGAGGGAAGCTGACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp CCTATCTCTAAGCCTTCCACTCCCACCTCCACAGAGGGCTCTCCTTaGAAGGGGCCTGCAAAACCATGGTGCAAAGAGCAAGACTGCCAC +
Preference number: 1 (lower is better)
Translates to: PISKPSTPTSTEGSP*KGPAKPWCKEQDCH
Trigger: GTGGCAGTCTTGCTCTTTGCACCATGGTTTTGCAGGCCCCTTGCAAGGAGAGCCCTCTGTGGAGGTGGGAGTGGAAGGCTTAGAGATAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp ACCTCCACAGAGGGCTCTCCTTGCAAGGGGCCTGCAAAACCATGGTaGAAAGAGCAAGACTGCCACCTAATGGAGAGACTGGGCATGACA +
Preference number: 1 (lower is better)
Translates to: TSTEGSPCKGPAKPW*KEQDCHLMERLGMT
Trigger: TGTCATGCCCAGTCTCTCCATTAGGTGGCAGTCTTGCTCTTTGCACCATGGTTTTGCAGGCCCCTTGCAAGGAGAGCCCTCTGTGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp CAGCATGCAGCCCAGAGTGAAACCACTACTTGGCAATATCACTTCTaGTCCACTTGTGGGACTCTAGAGGACGGGGCAAGCCTAGTCGGA +
Preference number: 1 (lower is better)
Translates to: QHAAQSETTTWQYHF*STCGTLEDGASLVG
Trigger: TCCGACTAGGCTTGCCCCGTCCTCTAGAGTCCCACAAGTGGAGCAGAAGTGATATTGCCAAGTAGTGGTTTCACTCTGGGCTGCATGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp AACTCACCCCAACTCTTACAACATCCAGGATTCCAATTCAAGGGTTaGTGTCCTCCCATCCCACCCTCAGGGCTGTCGGTCAGATACCCG +
Preference number: 1 (lower is better)
Translates to: NSPQLLQHPGFQFKG*CPPIPPSGLSVRYP
Trigger: CGGGTATCTGACCGACAGCCCTGAGGGTGGGATGGGAGGACAGCAACCCTTGAATTGGAATCCTGGATGTTGTAAGAGTTGGGGTGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 90 bp GTTCCTACACACGCACATCTCAGACAGTCAATGTCAGCCCACATTTaGCCGGTTTTTCTGACCACAGTGGTAGTAGTCCTGGGTACTGGG +
Preference number: 1 (lower is better)
Translates to: VPTHAHLRQSMSAHI*PVFLTTVVVVLGTG
Trigger: CCCAGTACCCAGGACTACTACCACTGTGGTCAGAAAAACCGGCCAAATGTGGGCTGACATTGACTGTCTGAGATGTGCGTGTGTAGGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp ACCATAGATACACAGAACTGCCTCAAAAACAAAAAGAAATGGTACTaGCCAGGGTGTTCCTGCCCTTCCCAGCAGCACACAGTAGCTGCT +
Preference number: 1 (lower is better)
Translates to: TIDTQNCLKNKKKWY*PGCSCPSQQHTVAA
Trigger: AGCAGCTACTGTGTGCTGCTGGGAAGGGCAGGAACACCCTGGGCAGTACCATTTCTTTTTGTTTTTGAGGCAGTTCTGTGTATCTATGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp GGAGACAGTTTTGGTTTCATAATGAGAGATAGGGTGCAGACTTCTTaGCATCTGGTGGATACCTCTCACGATGCTCAGGACGGTTCCTAC +
Preference number: 1 (lower is better)
Translates to: GDSFGFIMRDRVQTS*HLVDTSHDAQDGSY
Trigger: GTAGGAACCGTCCTGAGCATCGTGAGAGGTATCCACCAGATGGCAAGAAGTCTGCACCCTATCTCTCATTATGAAACCAAAACTGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 90 bp CCTCGGCTAAATAGCAAGTTTCAGGAGACCATAGATACACAGAACTaGCTCAAAAACAAAAAGAAATGGTACTGCCCAGGGTGTTCCTGC +
Preference number: 1 (lower is better)
Translates to: PRLNSKFQETIDTQN*LKNKKKWYCPGCSC
Trigger: GCAGGAACACCCTGGGCAGTACCATTTCTTTTTGTTTTTGAGGCAGTTCTGTGTATCTATGGTCTCCTGAAACTTGCTATTTAGCCGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CAA 90 bp CAACTCACCCCAACTCTTACAACATCCAGGATTCCAATTCAAGGGTaGCTGTCCTCCCATCCCACCCTCAGGGCTGTCGGTCAGATACCC +
Preference number: 2 (lower is better)
Translates to: QLTPTLTTSRIPIQG*LSSHPTLRAVGQIP
Trigger: GGGTATCTGACCGACAGCCCTGAGGGTGGGATGGGAGGACAGCAACCCTTGAATTGGAATCCTGGATGTTGTAAGAGTTGGGGTGAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR TCA 90 bp ACTTGGCAATATCACTTCTGCTCCACTTGTGGGACTCTAGAGGACGGGGCAAGCCTGAGGACGGATGTGTaGCTCATTGCGGTTCCTACA +
Preference number: 2 (lower is better)
Translates to: TWQYHFCSTCGTLEDGASLRTDV*LIAVPT
Trigger: TGTAGGAACCGCAATGAGTCACACATCCGTCCTCAG...GCTTGCCCCGTCCTCTAGAGTCCCACAAGTGGAGCAGAAGTGATATTGCCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR GCA 90 bp CTCTGTTGGCAGAGTGAATGCCAGCTTGCACAAAGCTCTGGGATCTATCCTCAGACAGAGGGCTCTCCTTaGAAGGGGCCTGCAAAACCA +
Preference number: 2 (lower is better)
Translates to: LCWQSECQLAQSSGIYPQTEGSP*KGPAKP
Trigger: TGGTTTTGCAGGCCCCTTGCAAGGAGAGCCCTCTGT...CTGAGGATAGATCCCAGAGCTTTGTGCAAGCTGGCATTCACTCTGCCAACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR CCA 90 bp TGTAGCTCTGTTGGCAGAGTGAATGCCAGCTTGCACAAAGCTCTGGGATCTATCTCCACGGGGCTGGACTaGCCAGTGTCTAGAAGCTGT +
Preference number: 2 (lower is better)
Translates to: CSSVGRVNASLHKALGSISTGLD*PVSRSC
Trigger: ACAGCTTCTAGACACTGGCCAGTCCAGCCCCGTGGA...GATAGATCCCAGAGCTTTGTGCAAGCTGGCATTCACTCTGCCAACAGAGCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR CCA 90 bp ACTTGGCAATATCACTTCTGCTCCACTTGTGGGACTCTAGAGGACGGGGCAAGCCTCGCTGATGAGATCTaGTGTCCTATCCCCATCATC +
Preference number: 2 (lower is better)
Translates to: TWQYHFCSTCGTLEDGASLADEI*CPIPII
Trigger: GATGATGGGGATAGGACACCAGATCTCATCAGCGAG...GCTTGCCCCGTCCTCTAGAGTCCCACAAGTGGAGCAGAAGTGATATTGCCAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR GCA 90 bp TGTAGCTCTGTTGGCAGAGTGAATGCCAGCTTGCACAAAGCTCTGGGATCTATCCAAGAGACAGGAATATaGATCTGTTCAGTCAGCTTC +
Preference number: 2 (lower is better)
Translates to: CSSVGRVNASLHKALGSIQETGI*ICSVSF
Trigger: GAAGCTGACTGAACAGATGCATATTCCTGTCTCTTG...GATAGATCCCAGAGCTTTGTGCAAGCTGGCATTCACTCTGCCAACAGAGCTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR GCA 90 bp GGTTTCATAATGAGAGATAGGGTGCAGACTTCTTGCCATCTGGTGGATACCTCTTGGCAATATCACTTCTaGTCCACTTGTGGGACTCTA +
Preference number: 2 (lower is better)
Translates to: GFIMRDRVQTSCHLVDTSWQYHF*STCGTL
Trigger: TAGAGTCCCACAAGTGGAGCAGAAGTGATATTGCCA...AGAGGTATCCACCAGATGGCAAGAAGTCTGCACCCTATCTCTCATTATGAAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR CCA 90 bp GGTTTCATAATGAGAGATAGGGTGCAGACTTCTTGCCATCTGGTGGATACCTCTAAAAACAAAAAGAAATaGTACTGCCCAGGGTGTTCC +
Preference number: 2 (lower is better)
Translates to: GFIMRDRVQTSCHLVDTSKNKKK*YCPGCS
Trigger: GGAACACCCTGGGCAGTACCATTTCTTTTTGTTTTT...AGAGGTATCCACCAGATGGCAAGAAGTCTGCACCCTATCTCTCATTATGAAACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CAA 90 bp TGGAAACTAGCGAACTACCATTTCCAACTGGATACGAAACTTCTTTaGGTCTCTAAAGTTCTCCTGACTGTAGCCAGTAAACAGGCTCTT +
Preference number: 2 (lower is better)
Translates to: WKLANYHFQLDTKLL*VSKVLLTVASKQAL
Trigger: AAGAGCCTGTTTACTGGCTACAGTCAGGAGAACTTTAGAGACCAAAAGAAGTTTCGTATCCAGTTGGAAATGGTAGTTCGCTAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp AACTCACCCTCACATCCCACACACCCTGCGCTGGACTaGCTTGCTCCTCCGCATGCCAAGAACAGCCCCCTG +
Preference number: 3 (lower is better)
Translates to: NSPSHPTHPALD*LAPPHAKNSPL
Trigger: CAGGGGGCTGTTCTTGGCATGCGGAGGAGCAAGGCAGTCCAGCGCAGGGTGTGTGGGATGTGAGGGTGAGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp TCACAGCCTCTCAGACTCAAAGAGGCAACAAGGGCCTaGGATCACAGGTTCCCTCCACGGGGCTGGACTGGC +
Preference number: 3 (lower is better)
Translates to: SQPLRLKEATRA*DHRFPPRGWTG
Trigger: GCCAGTCCAGCCCCGTGGAGGGAACCTGTGATCCCAGGCCCTTGTTGCCTCTTTGAGTCTGAGAGGCTGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp CTACAAACTCACCCTCACATCCCACACACCCTGCGCTaGACTGCCTTGCTCCTCCGCATGCCAAGAACAGCC +
Preference number: 3 (lower is better)
Translates to: LQTHPHIPHTLR*TALLLRMPRTA
Trigger: GGCTGTTCTTGGCATGCGGAGGAGCAAGGCAGTCCAGCGCAGGGTGTGTGGGATGTGAGGGTGAGTTTGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR CAA 90 bp CAGGATTCCAATTCAAGGGTTGCTGTCCTCCCATCCCACCCTCAGGGCTGTCGGTCACTTCTGCTCCACTaGTGGGACTCTAGAGGACGG +
Preference number: 3 (lower is better)
Translates to: QDSNSRVAVLPSHPQGCRSLLLH*WDSRGR
Trigger: CCGTCCTCTAGAGTCCCACAAGTGGAGCAGAAGTGA...CCGACAGCCCTGAGGGTGGGATGGGAGGACAGCAACCCTTGAATTGGAATCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp TCCCACCTCCACAGAGGGCTCTCCTTGCAAGGGGCCTaGAAAACCATGGTGCAAAGAGCAAGACTGCCACCT +
Preference number: 3 (lower is better)
Translates to: SHLHRGLSLQGA*KTMVQRARLPP
Trigger: AGGTGGCAGTCTTGCTCTTTGCACCATGGTTTTGCAGGCCCCTTGCAAGGAGAGCCCTCTGTGGAGGTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp GGCCTGGGATCACAGGTTCCCTCCACGGGGCTGGACTaGCCAGTGTCTAGAAGCTGTTGGCTATTTTCCCTA +
Preference number: 3 (lower is better)
Translates to: GLGSQVPSTGLD*PVSRSCWLFSL
Trigger: TAGGGAAAATAGCCAACAGCTTCTAGACACTGGCCAGTCCAGCCCCGTGGAGGGAACCTGTGATCCCAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp ACAAGGGCCTGGGATCACAGGTTCCCTCCACGGGGCTaGACTGGCCAGTGTCTAGAAGCTGTTGGCTATTTT +
Preference number: 3 (lower is better)
Translates to: TRAWDHRFPPRG*TGQCLEAVGYF
Trigger: AAAATAGCCAACAGCTTCTAGACACTGGCCAGTCCAGCCCCGTGGAGGGAACCTGTGATCCCAGGCCCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR CAA 90 bp AAGCTGTTGGCTATTTTCCCTATCTCTAAGCCTTCCACTCCCACCTCCACAGAGCTGCGCTGGACTGCCTaGCTCCTCCGCATGCCAAGA +
Preference number: 3 (lower is better)
Translates to: KLLAIFPISKPSTPTSTELRWTA*LLRMPR
Trigger: TCTTGGCATGCGGAGGAGCAAGGCAGTCCAGCGCAG...CTCTGTGGAGGTGGGAGTGGAAGGCTTAGAGATAGGGAAAATAGCCAACAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp GAGGGCTCTCCTTGCAAGGGGCCTGCAAAACCATGGTaGAAAGAGCAAGACTGCCACCTAATGGAGAGACTG +
Preference number: 3 (lower is better)
Translates to: EGSPCKGPAKPW*KEQDCHLMERL
Trigger: CAGTCTCTCCATTAGGTGGCAGTCTTGCTCTTTGCACCATGGTTTTGCAGGCCCCTTGCAAGGAGAGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp AAGGGGCCTGCAAAACCATGGTGCAAAGAGCAAGACTaGCACCTAATGGAGAGACTGGGCATGACAGCTCAG +
Preference number: 3 (lower is better)
Translates to: KGPAKPWCKEQD*HLMERLGMTAQ
Trigger: CTGAGCTGTCATGCCCAGTCTCTCCATTAGGTGGCAGTCTTGCTCTTTGCACCATGGTTTTGCAGGCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp GCCCAGAGTGAAACCACTACTTGGCAATATCACTTCTaGTCCACTTGTGGGACTCTAGAGGACGGGGCAAGC +
Preference number: 3 (lower is better)
Translates to: AQSETTTWQYHF*STCGTLEDGAS
Trigger: GCTTGCCCCGTCCTCTAGAGTCCCACAAGTGGAGCAGAAGTGATATTGCCAAGTAGTGGTTTCACTCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp TCCACGGGGCTGGACTGGCCAGTGTCTAGAAGCTGTTaGCTATTTTCCCTATCTCTAAGCCTTCCACTCCCA +
Preference number: 3 (lower is better)
Translates to: STGLDWPVSRSC*LFSLSLSLPLP
Trigger: TGGGAGTGGAAGGCTTAGAGATAGGGAAAATAGCCAACAGCTTCTAGACACTGGCCAGTCCAGCCCCGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp GGTTTTTCTGACCACAGTGGTAGTAGTCCTGGGTACTaGGCCTCTCTGAGTCCTTCAGACGTAGCTAAGGGT +
Preference number: 3 (lower is better)
Translates to: GFSDHSGSSPGY*ASLSPSDVAKG
Trigger: ACCCTTAGCTACGTCTGAAGGACTCAGAGAGGCCCAGTACCCAGGACTACTACCACTGTGGTCAGAAAAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp CACGCACATCTCAGACAGTCAATGTCAGCCCACATTTaGCCGGTTTTTCTGACCACAGTGGTAGTAGTCCTG +
Preference number: 3 (lower is better)
Translates to: HAHLRQSMSAHI*PVFLTTVVVVL
Trigger: CAGGACTACTACCACTGTGGTCAGAAAAACCGGCCAAATGTGGGCTGACATTGACTGTCTGAGATGTGCGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp AAAAACAAAAAGAAATGGTACTGCCCAGGGTGTTCCTaGCCTTCCCAGCAGCACACAGTAGCTGCTGTGTTG +
Preference number: 3 (lower is better)
Translates to: KNKKKWYCPGCS*PSQQHTVAAVL
Trigger: CAACACAGCAGCTACTGTGTGCTGCTGGGAAGGGCAGGAACACCCTGGGCAGTACCATTTCTTTTTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp ACACAGAACTGCCTCAAAAACAAAAAGAAATGGTACTaGCCAGGGTGTTCCTGCCCTTCCCAGCAGCACACA +
Preference number: 3 (lower is better)
Translates to: TQNCLKNKKKWY*PGCSCPSQQHT
Trigger: TGTGTGCTGCTGGGAAGGGCAGGAACACCCTGGGCAGTACCATTTCTTTTTGTTTTTGAGGCAGTTCTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR GCA 72 bp GGTGTCCTATCCCCATCATCCCAAGAGACAGGAATATaGATCTGTTCAGTCAGCTTCCCTCTACAAACTCAC +
Preference number: 3 (lower is better)
Translates to: GVLSPSSQETGI*ICSVSFPLQTH
Trigger: GTGAGTTTGTAGAGGGAAGCTGACTGAACAGATGCATATTCCTGTCTCTTGGGATGATGGGGATAGGACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CCA 72 bp CTACTACATACATCTTCCGAGGATATAAAGGAGGCATaGAGGCAACTCACCCCAACTCTTACAACATCCAGG +
Preference number: 3 (lower is better)
Translates to: LLHTSSEDIKEA*RQLTPTLTTSR
Trigger: CCTGGATGTTGTAAGAGTTGGGGTGAGTTGCCTCCATGCCTCCTTTATATCCTCGGAAGATGTATGTAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR-3UTR CAA 90 bp CCCAAGAGACAGGAATATGCATCTGTTCAGTCAGCTTCCCTCTACAAACTCACCGATACGAAACTTCTTTaGGTCTCTAAAGTTCTCCTG +
Preference number: 3 (lower is better)
Translates to: PKRQEYASVQSASLYKLTDTKLL*VSKVLL
Trigger: CAGGAGAACTTTAGAGACCAAAAGAAGTTTCGTATC...GGTGAGTTTGTAGAGGGAAGCTGACTGAACAGATGCATATTCCTGTCTCTTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR GCA 90 bp TCCCTCTACAAACTCACCCTCACATCCCACACACCCTGCGCTGGACTGCCTTGCGCCTCAAGACAGGGATaGCCCGAGCCTCGGCCACCC +
Preference number: 4 (lower is better)
Translates to: SLYKLTLTSHTPCAGLPCASRQG*PEPRPP
Trigger: GGGTGGCCGAGGCTCGGGGCATCCCTGTCTTGAGGC...GCAAGGCAGTCCAGCGCAGGGTGTGTGGGATGTGAGGGTGAGTTTGTAGAGGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp TACAAACTCACCCTCACATCCCACACACCCTGCGCTGGACTGCCTTGCTCCTCCGCCACCGAGGAGAAATaGCGGGCAATCAGGCGACTG +
Preference number: 4 (lower is better)
Translates to: YKLTLTSHTPCAGLPCSSATEEK*RAIRRL
Trigger: CAGTCGCCTGATTGCCCGCCATTTCTCCTCGGTGGC...GGAGGAGCAAGGCAGTCCAGCGCAGGGTGTGTGGGATGTGAGGGTGAGTTTGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp CAGGTTCCCTCCACGGGGCTGGACTGGCCAGTGTCTAGAAGCTGTTGGCTATTTGGAGATCTCAGGACCTaGGCAGCCCACTGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: QVPSTGLDWPVSRSCWLFGDLRT*AAHCAH
Trigger: GTGGGCACAGTGGGCTGCCCAGGTCCTGAGATCTCC...AAATAGCCAACAGCTTCTAGACACTGGCCAGTCCAGCCCCGTGGAGGGAACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp CAGGATTCCAATTCAAGGGTTGCTGTCCTCCCATCCCACCCTCAGGGCTGTCGGCCAGTTTCTGACGCCTaGGCCTCAAGACAGGGATGC +
Preference number: 4 (lower is better)
Translates to: QDSNSRVAVLPSHPQGCRPVSDA*ASRQGC
Trigger: GCATCCCTGTCTTGAGGCCCAGGCGTCAGAAACTGG...CCGACAGCCCTGAGGGTGGGATGGGAGGACAGCAACCCTTGAATTGGAATCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR GCA 90 bp AGAAGCTGTTGGCTATTTTCCCTATCTCTAAGCCTTCCACTCCCACCTCCACAGCTGGGCAGCCCACTGTaGCCACCACGAGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: RSCWLFSLSLSLPLPPPQLGSPL*PPRATP
Trigger: AGGGGTGGCTCGTGGTGGGCACAGTGGGCTGCCCAG...CTGTGGAGGTGGGAGTGGAAGGCTTAGAGATAGGGAAAATAGCCAACAGCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp GCCCAGAGTGAAACCACTACTTGGCAATATCACTTCTGCTCCACTTGTGGGACTAGACGTTCCAGCCGCTaGGCCGGCGCCAGGTCATCC +
Preference number: 4 (lower is better)
Translates to: AQSETTTWQYHFCSTCGTRRSSR*AGARSS
Trigger: GGATGACCTGGCGCCGGCCCAGCGGCTGGAACGTCT...AGTCCCACAAGTGGAGCAGAAGTGATATTGCCAAGTAGTGGTTTCACTCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp CCCAAGAGACAGGAATATGCATCTGTTCAGTCAGCTTCCCTCTACAAACTCACCCCAGCCTTACCGGCCTaGAGCAGGAGCCGGGCCACG +
Preference number: 4 (lower is better)
Translates to: PKRQEYASVQSASLYKLTPALPA*SRSRAT
Trigger: CGTGGCCCGGCTCCTGCTCCAGGCCGGTAAGGCTGG...GGTGAGTTTGTAGAGGGAAGCTGACTGAACAGATGCATATTCCTGTCTCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp CAGGATTCCAATTCAAGGGTTGCTGTCCTCCCATCCCACCCTCAGGGCTGTCGGAGACCAGGAGGCAGGTaGCGTCTGGGCAGAATAGTA +
Preference number: 4 (lower is better)
Translates to: QDSNSRVAVLPSHPQGCRRPGGR*RLGRIV
Trigger: TACTATTCTGCCCAGACGCCACCTGCCTCCTGGTCT...CCGACAGCCCTGAGGGTGGGATGGGAGGACAGCAACCCTTGAATTGGAATCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR TCA 90 bp TACAAACTCACCCTCACATCCCACACACCCTGCGCTGGACTGCCTTGCTCCTCCGGGAAACCCTTCTTCTaGCTGCAAATGGAGTGTAGA +
Preference number: 4 (lower is better)
Translates to: YKLTLTSHTPCAGLPCSSGKPFF*LQMECR
Trigger: TCTACACTCCATTTGCAGTCAGAAGAAGGGTTTCCC...GGAGGAGCAAGGCAGTCCAGCGCAGGGTGTGTGGGATGTGAGGGTGAGTTTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp AGAAGCTGTTGGCTATTTTCCCTATCTCTAAGCCTTCCACTCCCACCTCCACAGCGGGCAGGTCAGGAGTaGCGAACACGTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: RSCWLFSLSLSLPLPPPQRAGQE*RTRPSP
Trigger: AGGTGATGGACGTGTTCGCCACTCCTGACCTGCCCG...CTGTGGAGGTGGGAGTGGAAGGCTTAGAGATAGGGAAAATAGCCAACAGCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR TCA 90 bp CATCATCCCAAGAGACAGGAATATGCATCTGTTCAGTCAGCTTCCCTCTACAAAACGAGCCACAGCTGCTaGGGGTCGTCGCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: HHPKRQEYASVQSASLYKTSHSC*GSSPEL
Trigger: GAGCTCAGGCGACGACCCTCAGCAGCTGTGGCTCGT...TTTGTAGAGGGAAGCTGACTGAACAGATGCATATTCCTGTCTCTTGGGATGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp CCCAAGAGACAGGAATATGCATCTGTTCAGTCAGCTTCCCTCTACAAACTCACCGGCCTTGCTGACTACTaGAGTAAGCGGACAGCTGTT +
Preference number: 4 (lower is better)
Translates to: PKRQEYASVQSASLYKLTGLADY*SKRTAV
Trigger: AACAGCTGTCCGCTTACTCCAGTAGTCAGCAAGGCC...GGTGAGTTTGTAGAGGGAAGCTGACTGAACAGATGCATATTCCTGTCTCTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CAA 72 bp CTCAGATGTAGCTCTGTTGGCAGAGTGAATGCCAGCTaGCACAAAGCTCTGGGATCTATCCTCAGCAACATA +
Preference number: 4 (lower is better)
Translates to: LRCSSVGRVNAS*HKALGSILSNI
Trigger: TATGTTGCTGAGGATAGATCCCAGAGCTTTGTGCAAGCTGGCATTCACTCTGCCAACAGAGCTACATCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR GCA 90 bp CAGAACTGCCTCAAAAACAAAAAGAAATGGTACTGCCCAGGGTGTTCCTGCCCTAACCCTTCTTCTGACTaGAAATGGAGTGTAGAAGAA +
Preference number: 4 (lower is better)
Translates to: QNCLKNKKKWYCPGCSCPNPSSD*KWSVEE
Trigger: TTCTTCTACACTCCATTTGCAGTCAGAAGAAGGGTT...AGGGCAGGAACACCCTGGGCAGTACCATTTCTTTTTGTTTTTGAGGCAGTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CCA 90 bp CGAACTACCATTTCCAACTGGATACGAAACTTCTTTTGGTCTCTAAAGTTCTCCGGACAGCTGTTTCTCTaGCTGGTGATGACTCTGTCT +
Preference number: 4 (lower is better)
Translates to: RTTISNWIRNFFWSLKFSGQLFL*LVMTLS
Trigger: AGACAGAGTCATCACCAGCCAGAGAAACAGCTGTCC...GGAGAACTTTAGAGACCAAAAGAAGTTTCGTATCCAGTTGGAAATGGTAGTTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
3UTR CAA 72 bp GCGAACTACCATTTCCAACTGGATACGAAACTTCTTTaGGTCTCTAAAGTTCTCCTGACTGTAGCCAGTAAA +
Preference number: 4 (lower is better)
Translates to: ANYHFQLDTKLL*VSKVLLTVASK
Trigger: TTTACTGGCTACAGTCAGGAGAACTTTAGAGACCAAAAGAAGTTTCGTATCCAGTTGGAAATGGTAGTTCGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 90 bp CGGAGCAGCTCGGCTCGCTCCCCCTGCAGCCCAGCCTTACCGGCCTaGAGCAGGAGCCGGGCCACGCGCCGACGGGCAGCCCGCAAGGCC +
Preference number: 5 (lower is better)
Translates to: RSSSARSPCSPALPA*SRSRATRRRAARKA
Trigger: GGCCTTGCGGGCTGCCCGTCGGCGCGTGGCCCGGCTCCTGCTCCAGGCCGGTAAGGCTGGGCTGCAGGGGGAGCGAGCCGAGCTGCTCCG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS GCA 90 bp ATGCCCCGAGCCTCGGCCACCCGGAGCAGCTCGGCTCGCTCCCCCTaGAGCCCAGCCTTACCGGCCTGGAGCAGGAGCCGGGCCACGCGC +
Preference number: 5 (lower is better)
Translates to: MPRASATRSSSARSP*SPALPAWSRSRATR
Trigger: GCGCGTGGCCCGGCTCCTGCTCCAGGCCGGTAAGGCTGGGCTGCAGGGGGAGCGAGCCGAGCTGCTCCGGGTGGCCGAGGCTCGGGGCAT
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS TCA 90 bp CTGGAGCCCCTCAAGGACGAGCCACAGCTGCTGAGGGTCGTCGCCTaGGCTCGTGTCTGCCGCCTCATCGCAAGGCCGGGGTCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: LEPLKDEPQLLRVVA*ARVCRLIARPGSQR
Trigger: CCGCTGCGACCCCGGCCTTGCGATGAGGCGGCAGACACGAGCTCAGGCGACGACCCTCAGCAGCTGTGGCTCGTCCTTGAGGGGCTCCAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 90 bp TCCTCCCCGCCAGGCCGTTCCCCGCGCCGAGCCACCGAGGAGAAATaGCGGGCAATCAGGCGACTGAAGCACCCGACCGTCCAGAGTCGC +
Preference number: 5 (lower is better)
Translates to: SSPPGRSPRRATEEK*RAIRRLKHPTVQSR
Trigger: GCGACTCTGGACGGTCGGGTGCTTCAGTCGCCTGATTGCCCGCCATTTCTCCTCGGTGGCTCGGCGCGGGGAACGGCCTGGCGGGGAGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS GCA 90 bp CTGCCGCCTCATCGCAAGGCCGGGGTCGCAGCGGGCTCACCTCCATaGACACGCCCTGGTGCACTTGGTAGCCGCACAAGGCATCCAGTT +
Preference number: 5 (lower is better)
Translates to: LPPHRKAGVAAGSPP*TRPGALGSRTRHPV
Trigger: AACTGGATGCCTTGTGCGGCTACCAAGTGCACCAGGGCGTGTGCATGGAGGTGAGCCCGCTGCGACCCCGGCCTTGCGATGAGGCGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 90 bp CCTGGTGCACTTGGTAGCCGCACAAGGCATCCAGTTTCTGACGCCTaGGCCTCAAGACAGGGATGCCCCGAGCCTCGGCCACCCGGAGCA +
Preference number: 5 (lower is better)
Translates to: PGALGSRTRHPVSDA*ASRQGCPEPRPPGA
Trigger: TGCTCCGGGTGGCCGAGGCTCGGGGCATCCCTGTCTTGAGGCCCAGGCGTCAGAAACTGGATGCCTTGTGCGGCTACCAAGTGCACCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 90 bp CTGGGCAGAATAGTAAGGAGCAGCTGGCAGGAGGCAAAAACCTCCTaGGACAGACCAGAGCCCTCACTGCCCAGCACCAGGAGGGTAGGC +
Preference number: 5 (lower is better)
Translates to: LGRIVRSSWQEAKTS*DRPEPSLPSTRRVG
Trigger: GCCTACCCTCCTGGTGCTGGGCAGTGAGGGCTCTGGTCTGTCCCAGGAGGTTTTTGCCTCCTGCCAGCTGCTCCTTACTATTCTGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CAA 90 bp CAGGATTCCAATTCAAGGGTTGCTGTCCTCCCATCCCACCCTCAGGGCTGTCGGGCCCCAGCGCTGGCCTaGCTGACTACTGGAGTAAGC +
Preference number: 5 (lower is better)
Translates to: QDSNSRVAVLPSHPQGCRAPALA*LTTGVS
Trigger: GCTTACTCCAGTAGTCAGCAAGGCCAGCGCTGGGGC...CCGACAGCCCTGAGGGTGGGATGGGAGGACAGCAACCCTTGAATTGGAATCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS TCA 90 bp CAGCTGTTTCTCTGGCTGGTGATGACTCTGTCTACGCCGAGGAAGTaGGCGGAGCGCATCACAGCCCCAAGATTGCGGGGATCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: QLFLWLVMTLSTPRK*AERITAPRLRGSWS
Trigger: GCTCCAGGATCCCCGCAATCTTGGGGCTGTGATGCGCTCCGCTCACTTCCTCGGCGTAGACAGAGTCATCACCAGCCAGAGAAACAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 90 bp CACGTCCATCACCTCCATAGCCCCAGCGCTGGCCTTGCTGACTACTaGAGTAAGCGGACAGCTGTTTCTCTGGCTGGTGATGACTCTGTC +
Preference number: 5 (lower is better)
Translates to: HVHHLHSPSAGLADY*SKRTAVSLAGDDSV
Trigger: GACAGAGTCATCACCAGCCAGAGAAACAGCTGTCCGCTTACTCCAGTAGTCAGCAAGGCCAGCGCTGGGGCTATGGAGGTGATGGACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CAA 90 bp CCTAATGGAGAGACTGGGCATGACAGCTCAGCGGCTCAGGGCTCGCTGATGAGAGGAGTCTTGGAGAAGTaGTCCTCTCTCCTGTACAGG +
Preference number: 5 (lower is better)
Translates to: PNGETGHDSSAAQGSLMRGVLEK*SSLLYR
Trigger: CCTGTACAGGAGAGAGGACAACTTCTCCAAGACTCC...TCTCATCAGCGAGCCCTGAGCCGCTGAGCTGTCATGCCCAGTCTCTCCATTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 90 bp CCTGTGGCCACAGATACATTCAAGGACTCAAGACCAGGAGGCAGGTaGCGTCTGGGCAGAATAGTAAGGAGCAGCTGGCAGGAGGCAAAA +
Preference number: 5 (lower is better)
Translates to: PVATDTFKDSRPGGR*RLGRIVRSSWQEAK
Trigger: TTTTGCCTCCTGCCAGCTGCTCCTTACTATTCTGCCCAGACGCCACCTGCCTCCTGGTCTTGAGTCCTTGAATGTATCTGTGGCCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CAA 90 bp ACTTGGCAATATCACTTCTGCTCCACTTGTGGGACTCTAGAGGACGGGGCAAGCCTAGTGATGGGGACCTaGGAGGACTGGGAGATCTCA +
Preference number: 5 (lower is better)
Translates to: TWQYHFCSTCGTLEDGASLVMGT*EDWEIS
Trigger: TGAGATCTCCCAGTCCTCCAAGGTCCCCATCACTAG...GCTTGCCCCGTCCTCTAGAGTCCCACAAGTGGAGCAGAAGTGATATTGCCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS-3UTR CAA 90 bp AAAGTTCTCCTGACTGTAGCCAGTAAACAGGCTCTTACAAGTAGAGGGCCCATTATCACAGCCCCAAGATaGCGGGGATCCTGGAGCCCC +
Preference number: 5 (lower is better)
Translates to: KVLLTVASKQALTSRGPIITAPR*RGSWSP
Trigger: GGGGCTCCAGGATCCCCGCAATCTTGGGGCTGTGAT...AATGGGCCCTCTACTTGTAAGAGCCTGTTTACTGGCTACAGTCAGGAGAACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS GCA 72 bp GCCTCGGCCACCCGGAGCAGCTCGGCTCGCTCCCCCTaGAGCCCAGCCTTACCGGCCTGGAGCAGGAGCCGG +
Preference number: 6 (lower is better)
Translates to: ASATRSSSARSP*SPALPAWSRSR
Trigger: CCGGCTCCTGCTCCAGGCCGGTAAGGCTGGGCTGCAGGGGGAGCGAGCCGAGCTGCTCCGGGTGGCCGAGGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 72 bp CCAGGCCGTTCCCCGCGCCGAGCCACCGAGGAGAAATaGCGGGCAATCAGGCGACTGAAGCACCCGACCGTC +
Preference number: 6 (lower is better)
Translates to: PGRSPRRATEEK*RAIRRLKHPTV
Trigger: GACGGTCGGGTGCTTCAGTCGCCTGATTGCCCGCCATTTCTCCTCGGTGGCTCGGCGCGGGGAACGGCCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS GCA 72 bp CATCGCAAGGCCGGGGTCGCAGCGGGCTCACCTCCATaGACACGCCCTGGTGCACTTGGTAGCCGCACAAGG +
Preference number: 6 (lower is better)
Translates to: HRKAGVAAGSPP*TRPGALGSRTR
Trigger: CCTTGTGCGGCTACCAAGTGCACCAGGGCGTGTGCATGGAGGTGAGCCCGCTGCGACCCCGGCCTTGCGATG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS TCA 72 bp GGATCCTGGAGCCCCTCAAGGACGAGCCACAGCTGCTaGGGGTCGTCGCCTGAGCTCGTGTCTGCCGCCTCA +
Preference number: 6 (lower is better)
Translates to: GSWSPSRTSHSC*GSSPELVSAAS
Trigger: TGAGGCGGCAGACACGAGCTCAGGCGACGACCCTCAGCAGCTGTGGCTCGTCCTTGAGGGGCTCCAGGATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CAA 90 bp CCGGGGTCGCAGCGGGCTCACCTCCATGCACACGCCCTGGTGCACTaGGTAGCCGCACAAGGCATCCAGTTTCTGACGCCTGGGCCTCAA +
Preference number: 6 (lower is better)
Translates to: PGSQRAHLHAHALVH*VAAQGIQFLTPGPQ
Trigger: TTGAGGCCCAGGCGTCAGAAACTGGATGCCTTGTGCGGCTACCAAGTGCACCAGGGCGTGTGCATGGAGGTGAGCCCGCTGCGACCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 72 bp CTTGGTAGCCGCACAAGGCATCCAGTTTCTGACGCCTaGGCCTCAAGACAGGGATGCCCCGAGCCTCGGCCA +
Preference number: 6 (lower is better)
Translates to: LGSRTRHPVSDA*ASRQGCPEPRP
Trigger: TGGCCGAGGCTCGGGGCATCCCTGTCTTGAGGCCCAGGCGTCAGAAACTGGATGCCTTGTGCGGCTACCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CAA 90 bp GTAGGCCGGTCCCAGACGAACTCTAAGCAGCTAGTGATGGGGACCTaGGAGGACTGGGAGATCTCAGGACCTGGGCAGCCCACTGTGCCC +
Preference number: 6 (lower is better)
Translates to: VGRSQTNSKQLVMGT*EDWEISGPGQPTVP
Trigger: GGGCACAGTGGGCTGCCCAGGTCCTGAGATCTCCCAGTCCTCCAAGGTCCCCATCACTAGCTGCTTAGAGTTCGTCTGGGACCGGCCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 72 bp AGGCATGGGGACAAGCCAAATAGACGTTCCAGCCGCTaGGCCGGCGCCAGGTCATCCAGAAGCAAGCGACTC +
Preference number: 6 (lower is better)
Translates to: RHGDKPNRRSSR*AGARSSRSKRL
Trigger: GAGTCGCTTGCTTCTGGATGACCTGGCGCCGGCCCAGCGGCTGGAACGTCTATTTGGCTTGTCCCCATGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CAA 72 bp CAGCGGGCTCACCTCCATGCACACGCCCTGGTGCACTaGGTAGCCGCACAAGGCATCCAGTTTCTGACGCCT +
Preference number: 6 (lower is better)
Translates to: QRAHLHAHALVH*VAAQGIQFLTP
Trigger: AGGCGTCAGAAACTGGATGCCTTGTGCGGCTACCAAGTGCACCAGGGCGTGTGCATGGAGGTGAGCCCGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS TCA 72 bp CTCTGGCTGGTGATGACTCTGTCTACGCCGAGGAAGTaGGCGGAGCGCATCACAGCCCCAAGATTGCGGGGA +
Preference number: 6 (lower is better)
Translates to: LWLVMTLSTPRK*AERITAPRLRG
Trigger: TCCCCGCAATCTTGGGGCTGTGATGCGCTCCGCTCACTTCCTCGGCGTAGACAGAGTCATCACCAGCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CAA 90 bp GGAGTGGCGAACACGTCCATCACCTCCATAGCCCCAGCGCTGGCCTaGCTGACTACTGGAGTAAGCGGACAGCTGTTTCTCTGGCTGGTG +
Preference number: 6 (lower is better)
Translates to: GVANTSITSIAPALA*LTTGVSGQLFLWLV
Trigger: CACCAGCCAGAGAAACAGCTGTCCGCTTACTCCAGTAGTCAGCAAGGCCAGCGCTGGGGCTATGGAGGTGATGGACGTGTTCGCCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CAA 72 bp TCCCAGACGAACTCTAAGCAGCTAGTGATGGGGACCTaGGAGGACTGGGAGATCTCAGGACCTGGGCAGCCC +
Preference number: 6 (lower is better)
Translates to: SQTNSKQLVMGT*EDWEISGPGQP
Trigger: GGGCTGCCCAGGTCCTGAGATCTCCCAGTCCTCCAAGGTCCCCATCACTAGCTGCTTAGAGTTCGTCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CCA 72 bp CACCTCCATAGCCCCAGCGCTGGCCTTGCTGACTACTaGAGTAAGCGGACAGCTGTTTCTCTGGCTGGTGAT +
Preference number: 6 (lower is better)
Translates to: HLHSPSAGLADY*SKRTAVSLAGD
Trigger: ATCACCAGCCAGAGAAACAGCTGTCCGCTTACTCCAGTAGTCAGCAAGGCCAGCGCTGGGGCTATGGAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8
CDS CAA 72 bp AACACGTCCATCACCTCCATAGCCCCAGCGCTGGCCTaGCTGACTACTGGAGTAAGCGGACAGCTGTTTCTC +
Preference number: 6 (lower is better)
Translates to: NTSITSIAPALA*LTTGVSGQLFL
Trigger: GAGAAACAGCTGTCCGCTTACTCCAGTAGTCAGCAAGGCCAGCGCTGGGGCTATGGAGGTGATGGACGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018549.8