Pregenerated sensors for MRI1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004996Ensembl transcript IDs: ENSMUST00000005122.4, ENSMUST00000125498.2, ENSMUST00000126435.8
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCGGTGTGCCATGGCAGCCGCCGCCATGCTGTCAGTGATGAGAGTTaGAGGGATCTGCTCGTACACCAGCTCGAAGGCCGTCAGCCGGGC | + |
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Preference number: 1 (lower is better) Translates to: PVCHGSRRHAVSDES*RDLLVHQLEGRQPG Trigger: GCCCGGCTGACGGCCTTCGAGCTGGTGTACGAGCAGATCCCTGCAACTCTCATCACTGACAGCATGGCGGCGGCTGCCATGGCACACCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR GCA 90 bp | CGAAGGCCGTCAGCCGGGCTCCCTGGTTGTAGGGCCGGGTCTCTGTaGAGAAGGTATGCTCCAATCGGCCCATCTCATGCAGTGAGCGGA | + |
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Preference number: 1 (lower is better) Translates to: RRPSAGLPGCRAGSL*RRYAPIGPSHAVSG Trigger: TCCGCTCACTGCATGAGATGGGCCGATTGGAGCATACCTTCTGCACAGAGACCCGGCCCTACAACCAGGGAGCCCGGCTGACGGCCTTCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR GCA 90 bp | ATGGCAGCCGCCGCCATGCTGTCAGTGATGAGAGTTGCAGGGATCTaGTCGTACACCAGCTCGAAGGCCGTCAGCCGGGCTCCCTGGTTG | + |
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Preference number: 1 (lower is better) Translates to: MAAAAMLSVMRVAGI*SYTSSKAVSRAPWL Trigger: CAACCAGGGAGCCCGGCTGACGGCCTTCGAGCTGGTGTACGAGCAGATCCCTGCAACTCTCATCACTGACAGCATGGCGGCGGCTGCCAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR TCA 90 bp | AGGATGAGCCTGGGACGCGACCTTAGGCAGCTTTGCTGTGGATGCTaGAACTCTGCAGAACCTGGCAAACCATATCTGTTCCTGCAGCTG | + |
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Preference number: 1 (lower is better) Translates to: RMSLGRDLRQLCCGC*NSAEPGKPYLFLQL Trigger: CAGCTGCAGGAACAGATATGGTTTGCCAGGTTCTGCAGAGTTTCAGCATCCACAGCAAAGCTGCCTAAGGTCGCGTCCCAGGCTCATCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR GCA 90 bp | AGAAGGGGACACCGTGGTGTTTGGCGACAATGGCCAGCTGATAGGTaGCTATTTTGTTGGCTGTGTCTCCATTGGCAACAACACGGTCAG | + |
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Preference number: 1 (lower is better) Translates to: RRGHRGVWRQWPADR*LFCWLCLHWQQHGQ Trigger: CTGACCGTGTTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGCTGGCCATTGTCGCCAAACACCACGGTGTCCCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR TCA 90 bp | ACCGCCACATCTGTCTTTCATCCCATGCATAGATCATTCCAAGGATaGGCCTGGGACGCGACCTTAGGCAGCTTTGCTGTGGATGCTGAA | + |
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Preference number: 1 (lower is better) Translates to: TATSVFHPMHRSFQG*AWDATLGSFAVDAE Trigger: TTCAGCATCCACAGCAAAGCTGCCTAAGGTCGCGTCCCAGGCTCATCCTTGGAATGATCTATGCATGGGATGAAAGACAGATGTGGCGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 90 bp | TCAAGAGGCAGAGGTAGGTGGATCTTTGTGAGTTCTAGGGTAGCCTaGTCCATAGAGCAAGTCCAAGGGCAGCCAGAGCTACAAAGAGAC | + |
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Preference number: 1 (lower is better) Translates to: SRGRGRWIFVSSRVA*SIEQVQGQPELQRD Trigger: GTCTCTTTGTAGCTCTGGCTGCCCTTGGACTTGCTCTATGGACCAGGCTACCCTAGAACTCACAAAGATCCACCTACCTCTGCCTCTTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 90 bp | TGGCTGGGAACATGGCTCAGGGGTAAAGTGCATATTGTTTATGTATaGGAACCTGAGTGGTATCCCCACCATTCGCTGGTGCACACACCT | + |
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Preference number: 1 (lower is better) Translates to: WLGTWLRGKVHIVYV*EPEWYPHHSLVHTP Trigger: AGGTGTGTGCACCAGCGAATGGTGGGGATACCACTCAGGTTCTCATACATAAACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 90 bp | GCTGGAAGAGGGAGTGTGGGTGAAGATGAACTTTGGGTAGCCATTTaGGAACTTTATTATAAAACCAGAGGAAGTCAGGGCAGGGCACGG | + |
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Preference number: 1 (lower is better) Translates to: AGRGSVGEDELWVAI*ELYYKTRGSQGRAR Trigger: CCGTGCCCTGCCCTGACTTCCTCTGGTTTTATAATAAAGTTCTCAAATGGCTACCCAAAGTTCATCTTCACCCACACTCCCTCTTCCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR GCA 90 bp | AGGGCATCGGATTCCATTACAGATGTTTGTGAGCCACTATGTGGTTaGTGGGAATTGAACTCAGGACCTCTCCAAGCACAAGCAGTCAGT | + |
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Preference number: 1 (lower is better) Translates to: RASDSITDVCEPLCG*WELNSGPLQAQAVS Trigger: ACTGACTGCTTGTGCTTGGAGAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAAACATCTGTAATGGAATCCGATGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 90 bp | GTGTCTTCTTTTATAGGACTTGTTCTAGCACAGAGGTTTAGTTCCTaGGTCCCAGCTCCCATATGGCAGCTCACAACCACTTGTAATTCC | + |
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Preference number: 1 (lower is better) Translates to: VSSFIGLVLAQRFSS*VPAPIWQLTTTCNS Trigger: GGAATTACAAGTGGTTGTGAGCTGCCATATGGGAGCTGGGACCCAGGAACTAAACCTCTGTGCTAGAACAAGTCCTATAAAAGAAGACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR GCA 90 bp | TGGTCCATAGAGCAAGTCCAAGGGCAGCCAGAGCTACAAAGAGACTaGCTTAAAACACAAATATTTATCTTGATTACTGAACTTTGGTGT | + |
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Preference number: 1 (lower is better) Translates to: WSIEQVQGQPELQRD*LKTQIFILITELWC Trigger: ACACCAAAGTTCAGTAATCAAGATAAATATTTGTGTTTTAAGGCAGTCTCTTTGTAGCTCTGGCTGCCCTTGGACTTGCTCTATGGACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 90 bp | TGGAGGAAAATTAAAGGAGTGTCAAAAACGTTCAGTAATCATTGGTaGTGTGACTTGGTGGGTAAAGATGCTTGCTGCCATGCTTATTTG | + |
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Preference number: 1 (lower is better) Translates to: WRKIKGVSKTFSNHW*CDLVGKDACCHAYL Trigger: CAAATAAGCATGGCAGCAAGCATCTTTACCCACCAAGTCACATCACCAATGATTACTGAACGTTTTTGACACTCCTTTAATTTTCCTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 90 bp | AGCCAGAGCTACAAAGAGACTGCCTTAAAACACAAATATTTATCTTaGTTACTGAACTTTGGTGTCTTCTTTTATAGGACTTGTTCTAGC | + |
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Preference number: 1 (lower is better) Translates to: SQSYKETALKHKYLS*LLNFGVFFYRTCSS Trigger: GCTAGAACAAGTCCTATAAAAGAAGACACCAAAGTTCAGTAATCAAGATAAATATTTGTGTTTTAAGGCAGTCTCTTTGTAGCTCTGGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR-3UTR TCA 90 bp | GCCTGGTCCATAGAGCAAGTCCAAGGGCAGCCAGAGCTACAAAGAGACTGCCTTCTTTGCTGTGGATGCTaGAACTCTGCAGAACCTGGC | + |
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Preference number: 2 (lower is better) Translates to: AWSIEQVQGQPELQRDCLLCCGC*NSAEPG Trigger: GCCAGGTTCTGCAGAGTTTCAGCATCCACAGCAAAG...AAGGCAGTCTCTTTGTAGCTCTGGCTGCCCTTGGACTTGCTCTATGGACCAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR-3UTR CCA 90 bp | TACAGCTGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCTATGCACCTGGTGGCTaGGAACATGGCTCAGGGGTA | + |
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Preference number: 2 (lower is better) Translates to: YSCAGDREQPHIFSTRVAYAPGG*EHGSGV Trigger: TACCCCTGAGCCATGTTCCCAGCCACCAGGTGCATA...GGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACAGCTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR-3UTR TCA 90 bp | GCCTGGTCCATAGAGCAAGTCCAAGGGCAGCCAGAGCTACAAAGAGACTGCCTTAGTTTGAAGCCAGCCTaGTCTACAGATTGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: AWSIEQVQGQPELQRDCLSLKPA*STDCSR Trigger: CCTGGAACAATCTGTAGATCAGGCTGGCTTCAAACT...AAGGCAGTCTCTTTGTAGCTCTGGCTGCCCTTGGACTTGCTCTATGGACCAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR-3UTR GCA 90 bp | CAGCTGATAGGTGCCTATTTTGTTGGCTGTGTCTCCATTGGCAACAACACGGTCAGGGCCGGGTCTCTGTaGAGAAGGTATGCTCCAATC | + |
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Preference number: 2 (lower is better) Translates to: QLIGAYFVGCVSIGNNTVRAGSL*RRYAPI Trigger: GATTGGAGCATACCTTCTGCACAGAGACCCGGCCCT...GACCGTGTTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR-3UTR CCA 90 bp | AGCTGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCACATACCCTTTTCTGGTCTaGGAGAGCACCAGGGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: SCAGDREQPHIFSTRVATYPFLV*ESTRGL Trigger: CAAACCCCTGGTGCTCTCCCAGACCAGAAAAGGGTA...TGTGGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR-3UTR TCA 90 bp | AGTCTGGTAAACGAGGAGCTCGTTTTTGGAGGAAAATTAAAGGAGTGTCAAAAACATATTGTTTATGTATaGGAACCTGAGTGGTATCCC | + |
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Preference number: 2 (lower is better) Translates to: SLVNEELVFGGKLKECQKHIVYV*EPEWYP Trigger: GGGATACCACTCAGGTTCTCATACATAAACAATATG...TTTTTGACACTCCTTTAATTTTCCTCCAAAAACGAGCTCCTCGTTTACCAGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 72 bp | ATTGGCAACAACACGGTCAGCTCCCACCACCACGGCTaGCACACCCCGGTGTGCCATGGCAGCCGCCGCCAT | + |
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Preference number: 3 (lower is better) Translates to: IGNNTVSSHHHG*HTPVCHGSRRH Trigger: ATGGCGGCGGCTGCCATGGCACACCGGGGTGTGTCAGCCGTGGTGGTGGGAGCTGACCGTGTTGTTGCCAAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR GCA 72 bp | GCCGCCATGCTGTCAGTGATGAGAGTTGCAGGGATCTaGTCGTACACCAGCTCGAAGGCCGTCAGCCGGGCT | + |
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Preference number: 3 (lower is better) Translates to: AAMLSVMRVAGI*SYTSSKAVSRA Trigger: AGCCCGGCTGACGGCCTTCGAGCTGGTGTACGAGCAGATCCCTGCAACTCTCATCACTGACAGCATGGCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR GCA 72 bp | TCAGCCGGGCTCCCTGGTTGTAGGGCCGGGTCTCTGTaGAGAAGGTATGCTCCAATCGGCCCATCTCATGCA | + |
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Preference number: 3 (lower is better) Translates to: SAGLPGCRAGSL*RRYAPIGPSHA Trigger: TGCATGAGATGGGCCGATTGGAGCATACCTTCTGCACAGAGACCCGGCCCTACAACCAGGGAGCCCGGCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR GCA 72 bp | CATGGCAGCCGCCGCCATGCTGTCAGTGATGAGAGTTaGAGGGATCTGCTCGTACACCAGCTCGAAGGCCGT | + |
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Preference number: 3 (lower is better) Translates to: HGSRRHAVSDES*RDLLVHQLEGR Trigger: ACGGCCTTCGAGCTGGTGTACGAGCAGATCCCTGCAACTCTCATCACTGACAGCATGGCGGCGGCTGCCATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR CCA 72 bp | CCTTTCCAGTCTCCAGATGGAGGTCACAGGATGAACTaGGGGCAGCCACATAGAAGGGGACACCGTGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: PFQSPDGGHRMN*GQPHRRGHRGV Trigger: AACACCACGGTGTCCCCTTCTATGTGGCTGCCCCCAGTTCATCCTGTGACCTCCATCTGGAGACTGGAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR CCA 72 bp | GCTGATAGGTGCCTATTTTGTTGGCTGTGTCTCCATTaGCAACAACACGGTCAGCTCCCACCACCACGGCTG | + |
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Preference number: 3 (lower is better) Translates to: ADRCLFCWLCLH*QQHGQLPPPRL Trigger: CAGCCGTGGTGGTGGGAGCTGACCGTGTTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR TCA 72 bp | CTGGGACGCGACCTTAGGCAGCTTTGCTGTGGATGCTaGAACTCTGCAGAACCTGGCAAACCATATCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: LGRDLRQLCCGC*NSAEPGKPYLF Trigger: GAACAGATATGGTTTGCCAGGTTCTGCAGAGTTTCAGCATCCACAGCAAAGCTGCCTAAGGTCGCGTCCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 72 bp | GCAGCTTTGCTGTGGATGCTGAAACTCTGCAGAACCTaGCAAACCATATCTGTTCCTGCAGCTGGAAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: AALLWMLKLCRT*QTISVPAAGRG Trigger: CCCTCTTCCAGCTGCAGGAACAGATATGGTTTGCCAGGTTCTGCAGAGTTTCAGCATCCACAGCAAAGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 72 bp | GCACAGAGGTTTAGTTCCTGGGTCCCAGCTCCCATATaGCAGCTCACAACCACTTGTAATTCCAGTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: AQRFSSWVPAPI*QLTTTCNSSSR Trigger: CCTGGAACTGGAATTACAAGTGGTTGTGAGCTGCCATATGGGAGCTGGGACCCAGGAACTAAACCTCTGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 72 bp | AGAGGTAGGTGGATCTTTGTGAGTTCTAGGGTAGCCTaGTCCATAGAGCAAGTCCAAGGGCAGCCAGAGCTA | + |
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Preference number: 3 (lower is better) Translates to: RGRWIFVSSRVA*SIEQVQGQPEL Trigger: TAGCTCTGGCTGCCCTTGGACTTGCTCTATGGACCAGGCTACCCTAGAACTCACAAAGATCCACCTACCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 72 bp | TCTGTCTTTCATCCCATGCATAGATCATTCCAAGGATaGGCCTGGGACGCGACCTTAGGCAGCTTTGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: SVFHPMHRSFQG*AWDATLGSFAV Trigger: CACAGCAAAGCTGCCTAAGGTCGCGTCCCAGGCTCATCCTTGGAATGATCTATGCATGGGATGAAAGACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR GCA 72 bp | CACCGTGGTGTTTGGCGACAATGGCCAGCTGATAGGTaGCTATTTTGTTGGCTGTGTCTCCATTGGCAACAA | + |
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Preference number: 3 (lower is better) Translates to: HRGVWRQWPADR*LFCWLCLHWQQ Trigger: TTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGCTGGCCATTGTCGCCAAACACCACGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR TCA 72 bp | CAGATGTTTGTGAGCCACTATGTGGTTGCTGGGAATTaGACTCAGGACCTCTCCAAGCACAAGCAGTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: QMFVSHYVVAGN*TQDLSKHKQSV Trigger: CACTGACTGCTTGTGCTTGGAGAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAAACATCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR-3UTR CAA 90 bp | TATGCACCTGGTGGCTGGGAACATGGCTCAGGGGTAAAGTGCATATTGTTTATGGAGAGCACCAGGGGTTaGCATGTAAAACACTCACAC | + |
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Preference number: 3 (lower is better) Translates to: YAPGGWEHGSGVKCILFMESTRG*HVKHSH Trigger: GTGTGAGTGTTTTACATGCAAACCCCTGGTGCTCTC...CATAAACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCACCAGGTGCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR GCA 72 bp | GCACCTGGTGGCTGGGAACATGGCTCAGGGGTAAAGTaGATATTGTTTATGTATGAGAACCTGAGTGGTATC | + |
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Preference number: 3 (lower is better) Translates to: APGGWEHGSGVK*ILFMYENLSGI Trigger: GATACCACTCAGGTTCTCATACATAAACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCACCAGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 72 bp | TTGCTGCCATGCTTATTTGAGTTTGATCCTGGGTGGTaGCACAGGCATTTAATATCAGCACTTGGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: LLPCLFEFDPGW*HRHLISALGRQ Trigger: CTGCCTCCCAAGTGCTGATATTAAATGCCTGTGCCACCACCCAGGATCAAACTCAAATAAGCATGGCAGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 72 bp | TGCTTGCTGCCATGCTTATTTGAGTTTGATCCTGGGTaGTGGCACAGGCATTTAATATCAGCACTTGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: CLLPCLFEFDPG*WHRHLISALGR Trigger: CCTCCCAAGTGCTGATATTAAATGCCTGTGCCACCACCCAGGATCAAACTCAAATAAGCATGGCAGCAAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 72 bp | ACATGGCTCAGGGGTAAAGTGCATATTGTTTATGTATaGGAACCTGAGTGGTATCCCCACCATTCGCTGGTG | + |
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Preference number: 3 (lower is better) Translates to: TWLRGKVHIVYV*EPEWYPHHSLV Trigger: CACCAGCGAATGGTGGGGATACCACTCAGGTTCTCATACATAAACAATATGCACTTTACCCCTGAGCCATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR CCA 72 bp | TCCATTACAGATGTTTGTGAGCCACTATGTGGTTGCTaGGAATTGAACTCAGGACCTCTCCAAGCACAAGCA | + |
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Preference number: 3 (lower is better) Translates to: SITDVCEPLCGC*ELNSGPLQAQA Trigger: TGCTTGTGCTTGGAGAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAAACATCTGTAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR GCA 72 bp | GATTCCATTACAGATGTTTGTGAGCCACTATGTGGTTaGTGGGAATTGAACTCAGGACCTCTCCAAGCACAA | + |
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Preference number: 3 (lower is better) Translates to: DSITDVCEPLCG*WELNSGPLQAQ Trigger: TTGTGCTTGGAGAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAAACATCTGTAATGGAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| 3UTR TCA 72 bp | ATTAAAGGAGTGTCAAAAACGTTCAGTAATCATTGGTaGTGTGACTTGGTGGGTAAAGATGCTTGCTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: IKGVSKTFSNHW*CDLVGKDACCH Trigger: ATGGCAGCAAGCATCTTTACCCACCAAGTCACATCACCAATGATTACTGAACGTTTTTGACACTCCTTTAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CCA 90 bp | CTGTGTCTCCATTGGCAACAACACGGTCAGCTCCCACCACCACGGCTGACACACACTAAGAGGCGCAGCTaGTCTCGCACGAAGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: LCLHWQQHGQLPPPRLTHTKRRS*SRTKAT Trigger: GGTGGCCTTCGTGCGAGACCAGCTGCGCCTCTTAGT...GTGTGTCAGCCGTGGTGGTGGGAGCTGACCGTGTTGTTGCCAATGGAGACACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| 3UTR CAA 72 bp | TTCGCTGGTGCACACACCTGCTATCCCAGTGCTAAGTaGGCTGAAGCGGGAGGACCCCTGGAGTCTAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: FAGAHTCYPSAK*AEAGGPLESSL Trigger: CAGGCTAGACTCCAGGGGTCCTCCCGCTTCAGCCAACTTAGCACTGGGATAGCAGGTGTGTGCACCAGCGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CCA 90 bp | GCCGCCATGCTGTCAGTGATGAGAGTTGCAGGGATCTGCTCGTACACCAGCTCGACACCTTGCCACCCCTaGGGTTGGTCTGCTCTAGGA | + |
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Preference number: 4 (lower is better) Translates to: AAMLSVMRVAGICSYTSSTPCHP*GWSALG Trigger: TCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGT...CGAGCTGGTGTACGAGCAGATCCCTGCAACTCTCATCACTGACAGCATGGCGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| CDS-3UTR GCA 90 bp | AGCCACATAGAAGGGGACACCGTGGTGTTTGGCGACAATGGCCAGCTGATAGGTCAGTGCTCTGGCAGCTaGAGCTGGTCGAGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: SHIEGDTVVFGDNGQLIGQCSGS*SWSRIC Trigger: GCAGATCCTCGACCAGCTGCAGCTGCCAGAGCACTG...ACCTATCAGCTGGCCATTGTCGCCAAACACCACGGTGTCCCCTTCTATGTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| CDS-3UTR GCA 90 bp | GAAGCGGGAGGACCCCTGGAGTCTAGCCTGATAGCTGAATTCCAGGTTCACAGAAGGGCCGGGTCTCTGTaGAGAAGGTATGCTCCAATC | + |
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Preference number: 4 (lower is better) Translates to: EAGGPLESSLIAEFQVHRRAGSL*RRYAPI Trigger: GATTGGAGCATACCTTCTGCACAGAGACCCGGCCCT...TCTGTGAACCTGGAATTCAGCTATCAGGCTAGACTCCAGGGGTCCTCCCGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR TCA 90 bp | AAAATATGCACCTGGTGGCTGGGAACATGGCTCAGGGGTAAAGTGCATATTGTTTCCCACCACCACGGCTaGCACACCCCGGTGTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: KICTWWLGTWLRGKVHIVSHHHG*HTPVCH Trigger: ATGGCACACCGGGGTGTGTCAGCCGTGGTGGTGGGA...AACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCACCAGGTGCATATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR GCA 90 bp | GCTGAAACTCTGCAGAACCTGGCAAACCATATCTGTTCCTGCAGCTGGAAGAGGATGGCTTCACTAGCCTaGTGCACGGAGCTCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: AETLQNLANHICSCSWKRMASLA*CTELSA Trigger: GGCACTGAGCTCCGTGCAGCAGGCTAGTGAAGCCAT...CCTCTTCCAGCTGCAGGAACAGATATGGTTTGCCAGGTTCTGCAGAGTTTCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CCA 90 bp | TACAGCTGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCTCACCTTGCCACCCCTaGGGTTGGTCTGCTCTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: YSCAGDREQPHIFSTRVASPCHP*GWSALG Trigger: TCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGA...GGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACAGCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR TCA 90 bp | GCCTGGTCCATAGAGCAAGTCCAAGGGCAGCCAGAGCTACAAAGAGACTGCCTTTGGGGCGTTCCTCTATaGCAATCTCCTTTCCAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: AWSIEQVQGQPELQRDCLWGVPL*QSPFQS Trigger: AGACTGGAAAGGAGATTGTCATAGAGGAACGCCCCA...AAGGCAGTCTCTTTGTAGCTCTGGCTGCCCTTGGACTTGCTCTATGGACCAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR GCA 90 bp | CCAGCTGATAGGTGCCTATTTTGTTGGCTGTGTCTCCATTGGCAACAACACGGTATGGCTTCACTAGCCTaGTGCACGGAGCTCAGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: PADRCLFCWLCLHWQQHGMASLA*CTELSA Trigger: GGCACTGAGCTCCGTGCAGCAGGCTAGTGAAGCCAT...ACCGTGTTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| CDS-3UTR CCA 90 bp | GCTGAAACTCTGCAGAACCTGGCAAACCATATCTGTTCCTGCAGCTGGAAGAGGGGACACCGTGGTGTTTaGCGACAATGGCCAGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: AETLQNLANHICSCSWKRGHRGV*RQWPAD Trigger: ATCAGCTGGCCATTGTCGCCAAACACCACGGTGTCC...CCTCTTCCAGCTGCAGGAACAGATATGGTTTGCCAGGTTCTGCAGAGTTTCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR GCA 90 bp | AAAATATGCACCTGGTGGCTGGGAACATGGCTCAGGGGTAAAGTGCATATTGTTTCAGCACGGTCACCTTaGCACCCCTGGGGTTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: KICTWWLGTWLRGKVHIVSARSP*HPWGWS Trigger: AGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGA...AACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCACCAGGTGCATATTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CCA 90 bp | AAAATATGCACCTGGTGGCTGGGAACATGGCTCAGGGGTAAAGTGCATATTGTTACTAAGAGGCGCAGCTaGTCTCGCACGAAGGCCACC | + |
|
Preference number: 4 (lower is better) Translates to: KICTWWLGTWLRGKVHIVTKRRS*SRTKAT Trigger: GGTGGCCTTCGTGCGAGACCAGCTGCGCCTCTTAGT...AACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCACCAGGTGCATATTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CCA 90 bp | AGCTGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCACAGGTGTTTGGCGACAATaGCCAGCTGATAGGTGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: SCAGDREQPHIFSTRVATGVWRQ*PADRCL Trigger: TAGGCACCTATCAGCTGGCCATTGTCGCCAAACACC...TGTGGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR GCA 90 bp | TACAGCTGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCGTCAGTGATGAGAGTTaGAGGGATCTGCTCGTACAC | + |
|
Preference number: 4 (lower is better) Translates to: YSCAGDREQPHIFSTRVAVSDES*RDLLVH Trigger: GTGTACGAGCAGATCCCTGCAACTCTCATCACTGAC...GGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACAGCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CCA 90 bp | TATGCACCTGGTGGCTGGGAACATGGCTCAGGGGTAAAGTGCATATTGTTTATGTACCATAGCCAGCAGTaGCCAGAGCACCCGTGTTAC | + |
|
Preference number: 4 (lower is better) Translates to: YAPGGWEHGSGVKCILFMYHSQQ*PEHPCY Trigger: GTAACACGGGTGCTCTGGCCACTGCTGGCTATGGTA...CATAAACAATATGCACTTTACCCCTGAGCCATGTTCCCAGCCACCAGGTGCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR GCA 90 bp | AGTCTGGTAAACGAGGAGCTCGTTTTTGGAGGAAAATTAAAGGAGTGTCAAAAACAGTGCTCTGGCAGCTaGAGCTGGTCGAGGATCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SLVNEELVFGGKLKECQKQCSGS*SWSRIC Trigger: GCAGATCCTCGACCAGCTGCAGCTGCCAGAGCACTG...TTTTTGACACTCCTTTAATTTTCCTCCAAAAACGAGCTCCTCGTTTACCAGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR TCA 90 bp | AGTCTGGTAAACGAGGAGCTCGTTTTTGGAGGAAAATTAAAGGAGTGTCAAAAAATGGAGGTCACAGGATaGACTGGGGGCAGCCACATA | + |
|
Preference number: 4 (lower is better) Translates to: SLVNEELVFGGKLKECQKMEVTG*TGGSHI Trigger: TATGTGGCTGCCCCCAGTTCATCCTGTGACCTCCAT...TTTTTGACACTCCTTTAATTTTCCTCCAAAAACGAGCTCCTCGTTTACCAGACT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS CCA 90 bp | GCCATGTTGACAGCGGTGGGCCGGGCGGCGACTAAGAGGCGCAGCTaGTCTCGCACGAAGGCCACCAGAGCAGCGAGTCCGGGACCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: AMLTAVGRAATKRRS*SRTKATRAASPGPP Trigger: CGGCGGTCCCGGACTCGCTGCTCTGGTGGCCTTCGTGCGAGACCAGCTGCGCCTCTTAGTCGCCGCCCGGCCCACCGCTGTCAACATGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS CCA 90 bp | GAGCACCCGTGTTACAGTGGGTCAGCACGGTCACCTTGCCACCCCTaGGGTTGGTCTGCTCTAGGAGATGGCGGGCTCCCAAGTCCCCGA | + |
|
Preference number: 5 (lower is better) Translates to: EHPCYSGSARSPCHP*GWSALGDGGLPSPR Trigger: TCGGGGACTTGGGAGCCCGCCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGACCCACTGTAACACGGGTGCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS GCA 90 bp | TCCATTGGCAACAACACGGTCAGCTCCCACCACCACGGCCCGGTGTaGCATGGCAGCCGCCGCCATGCTGTCAGTGATGAGAGTTGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SIGNNTVSSHHHGPV*HGSRRHAVSDESCR Trigger: CCTGCAACTCTCATCACTGACAGCATGGCGGCGGCTGCCATGGCACACCGGGCCGTGGTGGTGGGAGCTGACCGTGTTGTTGCCAATGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125498.2 |
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| CDS CCA 90 bp | ACTAGCCTGCTGCACGGAGCTCAGTGCCTCATAGTGGCAGTGCTCTaGCAGCTGCAGCTGGTCGAGGATCTGCAGCGAGCCGGGCGAGTA | + |
|
Preference number: 5 (lower is better) Translates to: TSLLHGAQCLIVAVL*QLQLVEDLQRAGRV Trigger: TACTCGCCCGGCTCGCTGCAGATCCTCGACCAGCTGCAGCTGCCAGAGCACTGCCACTATGAGGCACTGAGCTCCGTGCAGCAGGCTAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS GCA 90 bp | CTTCATGGCGCGGATGGCTTCACTAGCCTGCTGCACGGAGCTCAGTaGCTCATAGTGGCAGTGCTCTGGCAGCTGCAGCTGGTCGAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: LHGADGFTSLLHGAQ*LIVAVLWQLQLVED Trigger: ATCCTCGACCAGCTGCAGCTGCCAGAGCACTGCCACTATGAGGCACTGAGCTCCGTGCAGCAGGCTAGTGAAGCCATCCGCGCCATGAAG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS-3UTR CAA 90 bp | TGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCACAGCTCTCCTGGGCTGCCACTaGACCCAGATCGCGGGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: CAGDREQPHIFSTRVATALLGCH*TQIAGG Trigger: GCCGCCCGCGATCTGGGTCAAGTGGCAGCCCAGGAG...AGCTGTGGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS CCA 90 bp | CATGCAGTGAGCGGATCACACCTAACGCTGTACCATAGCCAGCAGTaGCCAGAGCACCCGTGTTACAGTGGGTCAGCACGGTCACCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: HAVSGSHLTLYHSQQ*PEHPCYSGSARSPC Trigger: GCAAGGTGACCGTGCTGACCCACTGTAACACGGGTGCTCTGGCCACTGCTGGCTATGGTACAGCGTTAGGTGTGATCCGCTCACTGCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS-3UTR CAA 90 bp | CAGCTGATAGGTGCCTATTTTGTTGGCTGTGTCTCCATTGGCAACAACACGGTCCTCCTGGGCTGCCACTaGACCCAGATCGCGGGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: QLIGAYFVGCVSIGNNTVLLGCH*TQIAGG Trigger: GCCGCCCGCGATCTGGGTCAAGTGGCAGCCCAGGAG...GACCGTGTTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| CDS-3UTR CAA 90 bp | AGCCACATAGAAGGGGACACCGTGGTGTTTGGCGACAATGGCCAGCTGATAGGTTTGCCACCCCTGGGGTaGGTCTGCTCTAGGAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: SHIEGDTVVFGDNGQLIGLPPLG*VCSRRW Trigger: CCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAA...ACCTATCAGCTGGCCATTGTCGCCAAACACCACGGTGTCCCCTTCTATGTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005122.4 |
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| CDS TCA 90 bp | CTAGGAGATGGCGGGCTCCCAAGTCCCCGATGCTCCGGTTGTCTTTaGGGTCCTTCTCCAACATATCCTCGGCGAAGCGGATCACTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LGDGGLPSPRCSGCL*GPSPTYPRRSGSLF Trigger: AAAGAGTGATCCGCTTCGCCGAGGATATGTTGGAGAAGGACCTCAAAGACAACCGGAGCATCGGGGACTTGGGAGCCCGCCATCTCCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS TCA 90 bp | CTCTATGACAATCTCCTTTCCAGTCTCCAGATGGAGGTCACAGGATaGACTGGGGGCAGCCACATAGAAGGGGACACCGTGGTGTTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: LYDNLLSSLQMEVTG*TGGSHIEGDTVVFG Trigger: GCCAAACACCACGGTGTCCCCTTCTATGTGGCTGCCCCCAGTTCATCCTGTGACCTCCATCTGGAGACTGGAAAGGAGATTGTCATAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS-3UTR CAA 90 bp | TACAGCTGTGCTGGGGACAGAGAGCAGCCTCATATTTTCAGCACAAGAGTTGCCTTGGCTGTGTCTCCATaGGCAACAACACGGTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: YSCAGDREQPHIFSTRVALAVSP*ATTRSA Trigger: AGCTGACCGTGTTGTTGCCAATGGAGACACAGCCAA...GGCAACTCTTGTGCTGAAAATATGAGGCTGCTCTCTGTCCCCAGCACAGCTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS-3UTR CAA 90 bp | AGTCTGGTAAACGAGGAGCTCGTTTTTGGAGGAAAATTAAAGGAGTGTCAAAAATTGCCACCCCTGGGGTaGGTCTGCTCTAGGAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: SLVNEELVFGGKLKECQKLPPLG*VCSRRW Trigger: CCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAA...TTTTTGACACTCCTTTAATTTTCCTCCAAAAACGAGCTCCTCGTTTACCAGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000126435.8 |
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| CDS CCA 72 bp | ACAGCGGTGGGCCGGGCGGCGACTAAGAGGCGCAGCTaGTCTCGCACGAAGGCCACCAGAGCAGCGAGTCCG | + |
|
Preference number: 6 (lower is better) Translates to: TAVGRAATKRRS*SRTKATRAASP Trigger: CGGACTCGCTGCTCTGGTGGCCTTCGTGCGAGACCAGCTGCGCCTCTTAGTCGCCGCCCGGCCCACCGCTGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS CAA 90 bp | GCAGTGGCCAGAGCACCCGTGTTACAGTGGGTCAGCACGGTCACCTaGCCACCCCTGGGGTTGGTCTGCTCTAGGAGATGGCGGGCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: AVARAPVLQWVSTVT*PPLGLVCSRRWRAP Trigger: GGGAGCCCGCCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGACCCACTGTAACACGGGTGCTCTGGCCACTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS GCA 72 bp | AACAACACGGTCAGCTCCCACCACCACGGCCCGGTGTaGCATGGCAGCCGCCGCCATGCTGTCAGTGATGAG | + |
|
Preference number: 6 (lower is better) Translates to: NNTVSSHHHGPV*HGSRRHAVSDE Trigger: CTCATCACTGACAGCATGGCGGCGGCTGCCATGGCACACCGGGCCGTGGTGGTGGGAGCTGACCGTGTTGTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125498.2 |
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| CDS CCA 72 bp | AGTGGGTCAGCACGGTCACCTTGCCACCCCTGGGGTTaGTCTGCTCTAGGAGATGGCGGGCTCCCAAGTCCC | + |
|
Preference number: 6 (lower is better) Translates to: SGSARSPCHPWG*SALGDGGLPSP Trigger: GGGACTTGGGAGCCCGCCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGACCCACT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS CAA 72 bp | CAGTGGGTCAGCACGGTCACCTTGCCACCCCTGGGGTaGGTCTGCTCTAGGAGATGGCGGGCTCCCAAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: QWVSTVTLPPLG*VCSRRWRAPKS Trigger: GGACTTGGGAGCCCGCCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGACCCACTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS CCA 72 bp | CTGCACGGAGCTCAGTGCCTCATAGTGGCAGTGCTCTaGCAGCTGCAGCTGGTCGAGGATCTGCAGCGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: LHGAQCLIVAVL*QLQLVEDLQRA Trigger: GGCTCGCTGCAGATCCTCGACCAGCTGCAGCTGCCAGAGCACTGCCACTATGAGGCACTGAGCTCCGTGCAG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS CCA 72 bp | TGTTACAGTGGGTCAGCACGGTCACCTTGCCACCCCTaGGGTTGGTCTGCTCTAGGAGATGGCGGGCTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: CYSGSARSPCHP*GWSALGDGGLP Trigger: TGGGAGCCCGCCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGACCCACTGTAACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS CAA 72 bp | AGAGCACCCGTGTTACAGTGGGTCAGCACGGTCACCTaGCCACCCCTGGGGTTGGTCTGCTCTAGGAGATGG | + |
|
Preference number: 6 (lower is better) Translates to: RAPVLQWVSTVT*PPLGLVCSRRW Trigger: CCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCGTGCTGACCCACTGTAACACGGGTGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS CCA 72 bp | AGCGGATCACACCTAACGCTGTACCATAGCCAGCAGTaGCCAGAGCACCCGTGTTACAGTGGGTCAGCACGG | + |
|
Preference number: 6 (lower is better) Translates to: SGSHLTLYHSQQ*PEHPCYSGSAR Trigger: CCGTGCTGACCCACTGTAACACGGGTGCTCTGGCCACTGCTGGCTATGGTACAGCGTTAGGTGTGATCCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS CAA 72 bp | AGGAGATGGCGGGCTCCCAAGTCCCCGATGCTCCGGTaGTCTTTGAGGTCCTTCTCCAACATATCCTCGGCG | + |
|
Preference number: 6 (lower is better) Translates to: RRWRAPKSPMLR*SLRSFSNISSA Trigger: CGCCGAGGATATGTTGGAGAAGGACCTCAAAGACAACCGGAGCATCGGGGACTTGGGAGCCCGCCATCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005122.4 ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS CAA 90 bp | GTCTGCTCTAGGAGATGGCGGGCTCCCAAGTCCCCGATGCTCCGGTaGTCTTTGAGGTCCTTCTCCAACATATCCTCGGCGAAGCGGATC | + |
|
Preference number: 6 (lower is better) Translates to: VCSRRWRAPKSPMLR*SLRSFSNISSAKRI Trigger: GATCCGCTTCGCCGAGGATATGTTGGAGAAGGACCTCAAAGACAACCGGAGCATCGGGGACTTGGGAGCCCGCCATCTCCTAGAGCAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS CAA 90 bp | TCTAGGAGATGGCGGGCTCCCAAGTCCCCGATGCTCCGGTTGTCTTaGAGGTCCTTCTCCAACATATCCTCGGCGAAGCGGATCACTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SRRWRAPKSPMLRLS*RSFSNISSAKRITL Trigger: AAGAGTGATCCGCTTCGCCGAGGATATGTTGGAGAAGGACCTCAAAGACAACCGGAGCATCGGGGACTTGGGAGCCCGCCATCTCCTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005122.4 ENSMUST00000126435.8 |
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| CDS CCA 72 bp | GCTGATAGGTGCCTATTTTGTTGGCTGTGTCTCCATTaGCAACAACACGGTCAGCTCCCACCACCACGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: ADRCLFCWLCLH*QQHGQLPPPRP Trigger: GGGCCGTGGTGGTGGGAGCTGACCGTGTTGTTGCCAATGGAGACACAGCCAACAAAATAGGCACCTATCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125498.2 |
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| CDS TCA 72 bp | AATCTCCTTTCCAGTCTCCAGATGGAGGTCACAGGATaGACTGGGGGCAGCCACATAGAAGGGGACACCGTG | + |
|
Preference number: 6 (lower is better) Translates to: NLLSSLQMEVTG*TGGSHIEGDTV Trigger: CACGGTGTCCCCTTCTATGTGGCTGCCCCCAGTTCATCCTGTGACCTCCATCTGGAGACTGGAAAGGAGATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS TCA 72 bp | TCAGGTCAGTTAGCTCCTGGCTGGGGCGTTCCTCTATaGCAATCTCCTTTCCAGTCTCCAGATGGAGGTCAC | + |
|
Preference number: 6 (lower is better) Translates to: SGQLAPGWGVPL*QSPFQSPDGGH Trigger: GTGACCTCCATCTGGAGACTGGAAAGGAGATTGTCATAGAGGAACGCCCCAGCCAGGAGCTAACTGACCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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| CDS TCA 72 bp | GGAGACACAGAAAAATCCTGTCCTGTGCAGCAATCCTaGCTCCATTCAGGTCAGTTAGCTCCTGGCTGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GDTEKSCPVQQS*LHSGQLAPGWG Trigger: GCCCCAGCCAGGAGCTAACTGACCTGAATGGAGTCAGGATTGCTGCACAGGACAGGATTTTTCTGTGTCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125498.2 |
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| CDS CCA 72 bp | GCAGCAATCCTGACTCCATTCAGGTCAGTTAGCTCCTaGCTGGGGCGTTCCTCTATGACAATCTCCTTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: AAILTPFRSVSS*LGRSSMTISFP Trigger: TGGAAAGGAGATTGTCATAGAGGAACGCCCCAGCCAGGAGCTAACTGACCTGAATGGAGTCAGGATTGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000125498.2 ENSMUST00000126435.8 |
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