RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRGPRG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050276

Ensembl transcript IDs: ENSMUST00000058092.8, ENSMUST00000208986.2

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGCACAGTCCTAGAGGAGCCCAGAGCTGGGGATGGGATGGGATCTaGGTAGGATCCAGGGCCCCCTGCTTGCACTGTGTCGGCCCTTGG +
Preference number: 1 (lower is better)
Translates to: EHSPRGAQSWGWDGI*VGSRAPCLHCVGPW
Trigger: CCAAGGGCCGACACAGTGCAAGCAGGGGGCCCTGGATCCTACCCAGATCCCATCCCATCCCCAGCTCTGGGCTCCTCTAGGACTGTGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 90 bp GATCCAGGGCCCCCTGCTTGCACTGTGTCGGCCCTTGGGGACACCTaGGAAGCAGAAGTGCCCAGGAAGCAAGAACTTGAGGAAGACTTG +
Preference number: 1 (lower is better)
Translates to: DPGPPACTVSALGDT*EAEVPRKQELEEDL
Trigger: CAAGTCTTCCTCAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACAGTGCAAGCAGGGGGCCCTGGATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR GCA 90 bp CGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTTGCCGTCTCCTGTaGGTGTTCAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGCA +
Preference number: 1 (lower is better)
Translates to: RTCFSVCSCPPCRLL*VFNMQSGPHPFSPA
Trigger: TGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR GCA 90 bp GATCCTCCTTCACGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTTaGCGTCTCCTGTGCGTGTTCAATATGCAATCTGGCCCCCATCCC +
Preference number: 1 (lower is better)
Translates to: DPPSRTCFSVCSCPP*RLLCVFNMQSGPHP
Trigger: GGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGAAGGAGGATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 90 bp CTCCACCTTGTGGCTGCTATGAGTAGTAACACCAGGCTGGAGAATTaGGGAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATGCTC +
Preference number: 1 (lower is better)
Translates to: LHLVAAMSSNTRLEN*GGGQPQFLQKQRML
Trigger: GAGCATTCTCTGCTTTTGGAGAAACTGAGGCTGACCGCCTCCCCAATTCTCCAGCCTGGTGTTACTACTCATAGCAGCCACAAGGTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 90 bp TTCCTGCCCTCCTTGCCGTCTCCTGTGCGTGTTCAATATGCAATCTaGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCCATAAAA +
Preference number: 1 (lower is better)
Translates to: FLPSLPSPVRVQYAI*PPSLLSCIQEEAIK
Trigger: TTTTATGGCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 90 bp GGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATGCTCCCCAGGAGCTaGTGCTGTAGTTCTAGTCTTCTGACTCATCTACGGCAGGAGGAA +
Preference number: 1 (lower is better)
Translates to: GQPQFLQKQRMLPRS*CCSSSLLTHLRQEE
Trigger: TTCCTCCTGCCGTAGATGAGTCAGAAGACTAGAACTACAGCATCAGCTCCTGGGGAGCATTCTCTGCTTTTGGAGAAACTGAGGCTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 90 bp CCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTTGAGGAAGACTTaGGCACAGGACAGACTAGGTTTATTTAGTGATGAAACAGCTCCA +
Preference number: 1 (lower is better)
Translates to: PEKQKCPGSKNLRKT*AQDRLGLFSDETAP
Trigger: TGGAGCTGTTTCATCACTAAATAAACCTAGTCTGTCCTGTGCCCAAGTCTTCCTCAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR TCA 90 bp GCCGTCTCCTGTGCGTGTTCAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGACCCCCTGGCAGCTCTaGGGGCAGGGTAGGTGGGCG +
Preference number: 2 (lower is better)
Translates to: AVSCACSICNLAPIPSLLTPWQL*GQGRWA
Trigger: CGCCCACCTACCCTGCCCTCAGAGCTGCCAGGGGGT...CAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CAA 90 bp GATCTGGGTAGGATCCAGGGCCCCCTGCTTGCACTGTGTCGGCCCTaGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTTG +
Preference number: 2 (lower is better)
Translates to: DLGRIQGPLLALCRP*GTPEKQKCPGSKNL
Trigger: CAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACAGTGCAAGCAGGGGGCCCTGGATCCTACCCAGATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CAA 90 bp GGATCCTCCTTCACGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTaGCCGTCTCCTGTGCGTGTTCAATATGCAATCTGGCCCCCATCC +
Preference number: 2 (lower is better)
Translates to: GSSFTHLLLCLFLPS*PSPVRVQYAIWPPS
Trigger: GGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGAAGGAGGATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR TCA 90 bp GAGAATTGGGGAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATGCTCCCCCTGGTGTACTGGGGTTaGGGGGCAGCTTCCTCAGGT +
Preference number: 2 (lower is better)
Translates to: ENWGGGQPQFLQKQRMLPLVYWG*GAASSG
Trigger: ACCTGAGGAAGCTGCCCCTCAACCCCAGTACACCAG...GGGGAGCATTCTCTGCTTTTGGAGAAACTGAGGCTGACCGCCTCCCCAATTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR GCA 90 bp TGTGTCGGCCCTTGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTTGTTCCTGCCCTCCTTaGCGTCTCCTGTGCGTGTTC +
Preference number: 2 (lower is better)
Translates to: CVGPWGHLRSRSAQEARTCSCPP*RLLCVF
Trigger: GAACACGCACAGGAGACGGCAAGGAGGGCAGGAACA...AGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR TCA 90 bp CAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCCATAGCCGTCGCAAAGGTTTaGGCAAGACTGGGACCCCCT +
Preference number: 2 (lower is better)
Translates to: QYAIWPPSLLSCIQEEAIAVAKV*ARLGPP
Trigger: AGGGGGTCCCAGTCTTGCTCAAACCTTTGCGACGGC...TATGGCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR TCA 90 bp TGTGTCGGCCCTTGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTGTAGTTCTAGTCTTCTaGCTCATCTACGGCAGGAGG +
Preference number: 2 (lower is better)
Translates to: CVGPWGHLRSRSAQEARTVVLVF*LIYGRR
Trigger: CCTCCTGCCGTAGATGAGTCAGAAGACTAGAACTAC...AGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR CCA 90 bp TGTTCAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCAGGTTTGAGCAAGACTaGGACCCCCTGGCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: CSICNLAPIPSLLHTRGSRFEQD*DPLAAL
Trigger: CAGAGCTGCCAGGGGGTCCCAGTCTTGCTCAAACCT...GCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR CCA 90 bp AGGCTGGAGAATTGGGGAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATGGTTCAATATGCAATCTaGCCCCCATCCCTTCTCTCC +
Preference number: 2 (lower is better)
Translates to: RLENWGGGQPQFLQKQRMVQYAI*PPSLLS
Trigger: GGAGAGAAGGGATGGGGGCCAGATTGCATATTGAAC...CATTCTCTGCTTTTGGAGAAACTGAGGCTGACCGCCTCCCCAATTCTCCAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 72 bp GGATCCAGGGCCCCCTGCTTGCACTGTGTCGGCCCTTaGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCA +
Preference number: 3 (lower is better)
Translates to: GSRAPCLHCVGP*GHLRSRSAQEA
Trigger: TGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACAGTGCAAGCAGGGGGCCCTGGATCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 72 bp CCTAGAGGAGCCCAGAGCTGGGGATGGGATGGGATCTaGGTAGGATCCAGGGCCCCCTGCTTGCACTGTGTC +
Preference number: 3 (lower is better)
Translates to: PRGAQSWGWDGI*VGSRAPCLHCV
Trigger: GACACAGTGCAAGCAGGGGGCCCTGGATCCTACCCAGATCCCATCCCATCCCCAGCTCTGGGCTCCTCTAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 72 bp AGCTTGAGTGAGCACAGTCCTAGAGGAGCCCAGAGCTaGGGATGGGATGGGATCTGGGTAGGATCCAGGGCC +
Preference number: 3 (lower is better)
Translates to: SLSEHSPRGAQS*GWDGIWVGSRA
Trigger: GGCCCTGGATCCTACCCAGATCCCATCCCATCCCCAGCTCTGGGCTCCTCTAGGACTGTGCTCACTCAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 72 bp AATTCCCAGGATCAGAGCTTGGCCGTCGCAAAGGTTTaGGCAAGACTGGGACCCCCTGGCAGCTCTGAGGGC +
Preference number: 3 (lower is better)
Translates to: NSQDQSLAVAKV*ARLGPPGSSEG
Trigger: GCCCTCAGAGCTGCCAGGGGGTCCCAGTCTTGCTCAAACCTTTGCGACGGCCAAGCTCTGATCCTGGGAATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 72 bp CCCCCTGCTTGCACTGTGTCGGCCCTTGGGGACACCTaGGAAGCAGAAGTGCCCAGGAAGCAAGAACTTGAG +
Preference number: 3 (lower is better)
Translates to: PPACTVSALGDT*EAEVPRKQELE
Trigger: CTCAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACAGTGCAAGCAGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR CAA 90 bp GGAGGTAGGATCCATGTCCTCATTATAGTTCTGGGATCCTCCTTCACGCACCTGGGCCGTCGCAAAGGTTaGAGCAAGACTGGGACCCCC +
Preference number: 3 (lower is better)
Translates to: GGRIHVLIIVLGSSFTHLGRRKG*SKTGTP
Trigger: GGGGGTCCCAGTCTTGCTCAAACCTTTGCGACGGCC...CAGGTGCGTGAAGGAGGATCCCAGAACTATAATGAGGACATGGATCCTACCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 72 bp GCTGACAGGTCAAGGTGGGGGTCTACAGAAAAAGCTTaGGTGAGCACAGTCCTAGAGGAGCCCAGAGCTGGG +
Preference number: 3 (lower is better)
Translates to: ADRSRWGSTEKA*VSTVLEEPRAG
Trigger: CCCAGCTCTGGGCTCCTCTAGGACTGTGCTCACTCAAGCTTTTTCTGTAGACCCCCACCTTGACCTGTCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR GCA 72 bp CCTGCCCTCCTTGCCGTCTCCTGTGCGTGTTCAATATaGAATCTGGCCCCCATCCCTTCTCTCCTGCATACA +
Preference number: 3 (lower is better)
Translates to: PALLAVSCACSI*NLAPIPSLLHT
Trigger: TGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR GCA 72 bp TCACGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTTaGCGTCTCCTGTGCGTGTTCAATATGCAATCTGGC +
Preference number: 3 (lower is better)
Translates to: SRTCFSVCSCPP*RLLCVFNMQSG
Trigger: GCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR GCA 72 bp GATCCTCCTTCACGCACCTGCTTCTCTGTCTGTTCCTaGCCTCCTTGCCGTCTCCTGTGCGTGTTCAATATG +
Preference number: 3 (lower is better)
Translates to: DPPSRTCFSVCS*PPCRLLCVFNM
Trigger: CATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGAAGGAGGATC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 72 bp TGCTCCCCAGGAGCTGATGCTGTAGTTCTAGTCTTCTaGCTCATCTACGGCAGGAGGAAGCTCCTGGTGTAC +
Preference number: 3 (lower is better)
Translates to: CSPGADAVVLVF*LIYGRRKLLVY
Trigger: GTACACCAGGAGCTTCCTCCTGCCGTAGATGAGTCAGAAGACTAGAACTACAGCATCAGCTCCTGGGGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 72 bp GTGGCTGCTATGAGTAGTAACACCAGGCTGGAGAATTaGGGAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAG +
Preference number: 3 (lower is better)
Translates to: VAAMSSNTRLEN*GGGQPQFLQKQ
Trigger: CTGCTTTTGGAGAAACTGAGGCTGACCGCCTCCCCAATTCTCCAGCCTGGTGTTACTACTCATAGCAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR GCA 72 bp GAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATaGTCCCCAGGAGCTGATGCTGTAGTTCTAGTCTTC +
Preference number: 3 (lower is better)
Translates to: EAVSLSFSKSRE*SPGADAVVLVF
Trigger: GAAGACTAGAACTACAGCATCAGCTCCTGGGGAGCATTCTCTGCTTTTGGAGAAACTGAGGCTGACCGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 72 bp TCCTTGCCGTCTCCTGTGCGTGTTCAATATGCAATCTaGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAA +
Preference number: 3 (lower is better)
Translates to: SLPSPVRVQYAI*PPSLLSCIQEE
Trigger: TTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR-3UTR CAA 90 bp AGGAAGACTTGGGCACAGGACAGACTAGGTTTATTTAGTGATGAAACAGCTCCACACCAGGCTGGAGAATaGGGGAGGCGGTCAGCCTCA +
Preference number: 3 (lower is better)
Translates to: RKTWAQDRLGLFSDETAPHQAGE*GRRSAS
Trigger: TGAGGCTGACCGCCTCCCCAATTCTCCAGCCTGGTG...TGGAGCTGTTTCATCACTAAATAAACCTAGTCTGTCCTGTGCCCAAGTCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR TCA 72 bp CAGTTTCTCCAAAAGCAGAGAATGCTCCCCAGGAGCTaGTGCTGTAGTTCTAGTCTTCTGACTCATCTACGG +
Preference number: 3 (lower is better)
Translates to: QFLQKQRMLPRS*CCSSSLLTHLR
Trigger: CCGTAGATGAGTCAGAAGACTAGAACTACAGCATCAGCTCCTGGGGAGCATTCTCTGCTTTTGGAGAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CCA 72 bp CAGAAGTGCCCAGGAAGCAAGAACTTGAGGAAGACTTaGGCACAGGACAGACTAGGTTTATTTAGTGATGAA +
Preference number: 3 (lower is better)
Translates to: QKCPGSKNLRKT*AQDRLGLFSDE
Trigger: TTCATCACTAAATAAACCTAGTCTGTCCTGTGCCCAAGTCTTCCTCAAGTTCTTGCTTCCTGGGCACTTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CAA 72 bp AGGATCCAGGGCCCCCTGCTTGCACTGTGTCGGCCCTaGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: RIQGPLLALCRP*GTPEKQKCPGS
Trigger: GCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACAGTGCAAGCAGGGGGCCCTGGATCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp TGTCGGCCCTTGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTTGACAGCACGGCCGGCATaGTCAGGGCCCAGATCACGA +
Preference number: 4 (lower is better)
Translates to: CRPLGTPEKQKCPGSKNLTARPA*SGPRSR
Trigger: TCGTGATCTGGGCCCTGACCATGCCGGCCGTGCTGT...CAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR TCA 90 bp TGTGTCGGCCCTTGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTGAGGCAGAGGACAACTaGAGTGAACCTGGGACGGCG +
Preference number: 4 (lower is better)
Translates to: CVGPWGHLRSRSAQEARTEAEDN*SEPGTA
Trigger: CGCCGTCCCAGGTTCACTTCAGTTGTCCTCTGCCTC...AGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR TCA 90 bp CTTCACGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTTGCCGTCTCCTGTGCGGTACCGCTAGCCAGGTaGCACTGGTCCAATGGTACT +
Preference number: 4 (lower is better)
Translates to: LHAPASLSVPALLAVSCAVPLAR*HWSNGT
Trigger: AGTACCATTGGACCAGTGTCACCTGGCTAGCGGTAC...CGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR GCA 90 bp GAGAATTGGGGAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATGCTCCCCGTTGCCCACCAGCCCTaGAAGGCTGACAGTGAGGCT +
Preference number: 4 (lower is better)
Translates to: ENWGGGQPQFLQKQRMLPVAHQP*KADSEA
Trigger: AGCCTCACTGTCAGCCTTGCAGGGCTGGTGGGCAAC...GGGGAGCATTCTCTGCTTTTGGAGAAACTGAGGCTGACCGCCTCCCCAATTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR TCA 90 bp GCCCTCCTTGCCGTCTCCTGTGCGTGTTCAATATGCAATCTGGCCCCCATCCCTGAAGCCAACTTGGCATaGGAGGAAGAGGAAATCGGC +
Preference number: 4 (lower is better)
Translates to: ALLAVSCACSICNLAPIPEANLA*EEEEIG
Trigger: GCCGATTTCCTCTTCCTCTCATGCCAAGTTGGCTTC...AGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR TCA 90 bp AGGCTGGAGAATTGGGGAGGCGGTCAGCCTCAGTTTCTCCAAAAGCAGAGAATGGGCAACAGTCCACACTaGAGGCAGCCAGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: RLENWGGGQPQFLQKQRMGNSPH*RQPAAR
Trigger: TCTGGCTGCTGGCTGCCTTCAGTGTGGACTGTTGCC...CATTCTCTGCTTTTGGAGAAACTGAGGCTGACCGCCTCCCCAATTCTCCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR GCA 90 bp GTTCAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCCAGAGCAGCAGAGCGTTaGCCACCAGCCCTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: VQYAIWPPSLLSCIQEEARAAER*PPALQG
Trigger: GCCTTGCAGGGCTGGTGGGCAACGCTCTGCTGCTCT...GGCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp TGTTCAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCCCCACAGGCGTTGGCTaGCAACAGCACGGCCGGCAT +
Preference number: 4 (lower is better)
Translates to: CSICNLAPIPSLLHTRGSPTGVG*QQHGRH
Trigger: ATGCCGGCCGTGCTGTTGCCAGCCAACGCCTGTGGG...GCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp TGTCGGCCCTTGGGGACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTTGAGGATCCCAGAGCACTaGGCCAACTTGCAGAACTTG +
Preference number: 4 (lower is better)
Translates to: CRPLGTPEKQKCPGSKNLRIPEH*ANLQNL
Trigger: CAAGTTCTGCAAGTTGGCCCAGTGCTCTGGGATCCT...CAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGTCCCCAAGGGCCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR GCA 90 bp AGAAAAAGCTTGAGTGAGCACAGTCCTAGAGGAGCCCAGAGCTGGGGATGGGATCTGTTTAGGGCTACCTaGAGTGGGTCCTTCCTGAGC +
Preference number: 4 (lower is better)
Translates to: RKSLSEHSPRGAQSWGWDLFRAT*SGSFLS
Trigger: GCTCAGGAAGGACCCACTGCAGGTAGCCCTAAACAG...ATCCCATCCCCAGCTCTGGGCTCCTCTAGGACTGTGCTCACTCAAGCTTTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp GGAGGTAGGATCCATGTCCTCATTATAGTTCTGGGATCCTCCTTCACGCACCTGCAGGAGGGTGGCCAGTaGAAAGAAGAAGGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: GGRIHVLIIVLGSSFTHLQEGGQ*KEEGEQ
Trigger: CTGCTCCCCTTCTTCTTTCCACTGGCCACCCTCCTG...CAGGTGCGTGAAGGAGGATCCCAGAACTATAATGAGGACATGGATCCTACCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CAA 72 bp TTCACGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTaGCCGTCTCCTGTGCGTGTTCAATATGCAATCTGG +
Preference number: 4 (lower is better)
Translates to: FTHLLLCLFLPS*PSPVRVQYAIW
Trigger: CCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR GCA 90 bp TGTTCAATATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCAGAGGGGCTTTGCACTaGTGTCAATGCAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: CSICNLAPIPSLLHTRGSRGALH*CQCRPG
Trigger: TCCTGGCCTGCATTGACAGCAGTGCAAAGCCCCTCT...GCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATATTGAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp GGAGGTAGGATCCATGTCCTCATTATAGTTCTGGGATCCTCCTTCACGCACCTGGTGACACTGGTCCAATaGTACTTGAGGCAGACCAGC +
Preference number: 4 (lower is better)
Translates to: GGRIHVLIIVLGSSFTHLVTLVQ*YLRQTS
Trigger: GCTGGTCTGCCTCAAGTACCATTGGACCAGTGTCAC...CAGGTGCGTGAAGGAGGATCCCAGAACTATAATGAGGACATGGATCCTACCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp TATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCCATAAAACCACAGGAAGGTGACTaGGAAGTAGAGTGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: YAIWPPSLLSCIQEEAIKPQEGD*EVECVL
Trigger: GAGGACACACTCTACTTCCCAGTCACCTTCCTGTGG...TTTTATGGCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
3UTR CAA 72 bp ACACCTGAGAAGCAGAAGTGCCCAGGAAGCAAGAACTaGAGGAAGACTTGGGCACAGGACAGACTAGGTTTA +
Preference number: 4 (lower is better)
Translates to: TPEKQKCPGSKN*RKTWAQDRLGL
Trigger: TAAACCTAGTCTGTCCTGTGCCCAAGTCTTCCTCAAGTTCTTGCTTCCTGGGCACTTCTGCTTCTCAGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR TCA 90 bp AGGAAGACTTGGGCACAGGACAGACTAGGTTTATTTAGTGATGAAACAGCTCCACAAACCACAGGAAGGTaGCTGGGAAGTAGAGTGTGT +
Preference number: 4 (lower is better)
Translates to: RKTWAQDRLGLFSDETAPQTTGR*LGSRVC
Trigger: ACACACTCTACTTCCCAGTCACCTTCCTGTGGTTTG...TGGAGCTGTTTCATCACTAAATAAACCTAGTCTGTCCTGTGCCCAAGTCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CCA 90 bp TATGCAATCTGGCCCCCATCCCTTCTCTCCTGCATACAAGAGGAAGCCATAAAAATAGAGAAGCCAACTTaGCATGAGAGGAAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: YAIWPPSLLSCIQEEAIKIEKPT*HERKRK
Trigger: TTTCCTCTTCCTCTCATGCCAAGTTGGCTTCTCTAT...TTTTATGGCTTCCTCTTGTATGCAGGAGAGAAGGGATGGGGGCCAGATTGCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS CCA 90 bp GGCAGCCAGCAGCCAGAGCCCCACGGCAAACCACAGGAAGGTGACTaGGAAGTAGAGTGTGTCCTCATGGCCCGACACGATCGTAGCAAT +
Preference number: 5 (lower is better)
Translates to: GSQQPEPHGKPQEGD*EVECVLMARHDRSN
Trigger: ATTGCTACGATCGTGTCGGGCCATGAGGACACACTCTACTTCCCAGTCACCTTCCTGTGGTTTGCCGTGGGGCTCTGGCTGCTGGCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058092.8
ENSMUST00000208986.2
CDS-3UTR CAA 90 bp CCTTCACGCACCTGCTTCTCTGTCTGTTCCTGCCCTCCTTGCCGTCTCCTGTGCAAGAAGAGCACTTTGTaGAATGTGCCCCAGATGTTG +
Preference number: 5 (lower is better)
Translates to: PSRTCFSVCSCPPCRLLCKKSTL*NVPQML
Trigger: CAACATCTGGGGCACATTCAACAAAGTGCTCTTCTT...GCACAGGAGACGGCAAGGAGGGCAGGAACAGACAGAGAAGCAGGTGCGTGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS-3UTR CAA 90 bp GCCCTCCTTGCCGTCTCCTGTGCGTGTTCAATATGCAATCTGGCCCCCATCCCTAGGAAGAAGAGCACTTaGTTGAATGTGCCCCAGATG +
Preference number: 5 (lower is better)
Translates to: ALLAVSCACSICNLAPIPRKKST*LNVPQM
Trigger: CATCTGGGGCACATTCAACAAAGTGCTCTTCTTCCT...AGGGATGGGGGCCAGATTGCATATTGAACACGCACAGGAGACGGCAAGGAGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS CCA 90 bp AGAAGAACAGAAGGATCCCAGAGCACTGGGCCAACTTGCAGAACTTaGGGGGTGGCTGTGAAGAGCAGCAGTTCCCAAAGATTAAGAGAA +
Preference number: 5 (lower is better)
Translates to: RRTEGSQSTGPTCRT*GVAVKSSSSQRLRE
Trigger: TTCTCTTAATCTTTGGGAACTGCTGCTCTTCACAGCCACCCCCCAAGTTCTGCAAGTTGGCCCAGTGCTCTGGGATCCTTCTGTTCTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS GCA 72 bp GAGGTGCCAGAGCAGCAGAGCGTTGCCCACCAGCCCTaGAAGGCTGACAGTGAGGCTGAGGAAGAAGAGCAC +
Preference number: 6 (lower is better)
Translates to: EVPEQQSVAHQP*KADSEAEEEEH
Trigger: GTGCTCTTCTTCCTCAGCCTCACTGTCAGCCTTGCAGGGCTGGTGGGCAACGCTCTGCTGCTCTGGCACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058092.8
ENSMUST00000208986.2
CDS CAA 90 bp GGTCCCTTCTTAATGTGCAGACCGAGGTGCCAGAGCAGCAGAGCGTaGCCCACCAGCCCTGCAAGGCTGACAGTGAGGCTGAGGAAGAAG +
Preference number: 6 (lower is better)
Translates to: GPFLMCRPRCQSSRA*PTSPARLTVRLRKK
Trigger: CTTCTTCCTCAGCCTCACTGTCAGCCTTGCAGGGCTGGTGGGCAACGCTCTGCTGCTCTGGCACCTCGGTCTGCACATTAAGAAGGGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058092.8
ENSMUST00000208986.2
CDS CCA 72 bp CAGCCAGAGCCCCACGGCAAACCACAGGAAGGTGACTaGGAAGTAGAGTGTGTCCTCATGGCCCGACACGAT +
Preference number: 6 (lower is better)
Translates to: QPEPHGKPQEGD*EVECVLMARHD
Trigger: ATCGTGTCGGGCCATGAGGACACACTCTACTTCCCAGTCACCTTCCTGTGGTTTGCCGTGGGGCTCTGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058092.8
ENSMUST00000208986.2
CDS GCA 72 bp GCCTGCCCTTCATGTAGTACAAGAGGGGCTTTGCACTaGTGTCAATGCAGGCCAGGAGGGTGGCCAGTGGAA +
Preference number: 6 (lower is better)
Translates to: ACPSCSTRGALH*CQCRPGGWPVE
Trigger: TTCCACTGGCCACCCTCCTGGCCTGCATTGACAGCAGTGCAAAGCCCCTCTTGTACTACATGAAGGGCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS CCA 72 bp GAAGGATCCCAGAGCACTGGGCCAACTTGCAGAACTTaGGGGGTGGCTGTGAAGAGCAGCAGTTCCCAAAGA +
Preference number: 6 (lower is better)
Translates to: EGSQSTGPTCRT*GVAVKSSSSQR
Trigger: TCTTTGGGAACTGCTGCTCTTCACAGCCACCCCCCAAGTTCTGCAAGTTGGCCCAGTGCTCTGGGATCCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS GCA 72 bp TCATGTAGTACAAGAGGGGCTTTGCACTGCTGTCAATaGAGGCCAGGAGGGTGGCCAGTGGAAAGAAGAAGG +
Preference number: 6 (lower is better)
Translates to: SCSTRGALHCCQ*RPGGWPVERRR
Trigger: CCTTCTTCTTTCCACTGGCCACCCTCCTGGCCTGCATTGACAGCAGTGCAAAGCCCCTCTTGTACTACATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS CCA 72 bp CCAGACAGTACCGCTAGCCAGGTGACACTGGTCCAATaGTACTTGAGGCAGACCAGCAGACTCATTCCGTTT +
Preference number: 6 (lower is better)
Translates to: PDSTASQVTLVQ*YLRQTSRLIPF
Trigger: AAACGGAATGAGTCTGCTGGTCTGCCTCAAGTACCATTGGACCAGTGTCACCTGGCTAGCGGTACTGTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS GCA 72 bp GTGAAGAGCAGCAGTTCCCAAAGATTAAGAGAAACTTaGTTGCCCCACATGCCATGCCAGACAGTACCGCTA +
Preference number: 6 (lower is better)
Translates to: VKSSSSQRLRET*LPHMPCQTVPL
Trigger: TAGCGGTACTGTCTGGCATGGCATGTGGGGCAAGCAAGTTTCTCTTAATCTTTGGGAACTGCTGCTCTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS CAA 72 bp TGTGAAGAGCAGCAGTTCCCAAAGATTAAGAGAAACTaGCTTGCCCCACATGCCATGCCAGACAGTACCGCT +
Preference number: 6 (lower is better)
Translates to: CEEQQFPKIKRN*LAPHAMPDSTA
Trigger: AGCGGTACTGTCTGGCATGGCATGTGGGGCAAGCAAGTTTCTCTTAATCTTTGGGAACTGCTGCTCTTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058092.8
CDS CAA 72 bp GCAAGGCTGACAGTGAGGCTGAGGAAGAAGAGCACTTaGTTGAATGTGCCCCAGATGTTGAATATGGAGAAC +
Preference number: 6 (lower is better)
Translates to: ARLTVRLRKKST*LNVPQMLNMEN
Trigger: GTTCTCCATATTCAACATCTGGGGCACATTCAACAAAGTGCTCTTCTTCCTCAGCCTCACTGTCAGCCTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058092.8
ENSMUST00000208986.2