Pregenerated sensors for MRGPRF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031070Ensembl transcript IDs: ENSMUST00000033386.12, ENSMUST00000117718.2
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCCCGGCTCCGCACCATCCCGGAGAGCCCGCTGGAAGACCACCCTaGGAGGTTCCCACAGGCGCTGTGACTTGTCTCTCCCAGCCAGGA | + |
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Preference number: 1 (lower is better) Translates to: PPAPHHPGEPAGRPP*EVPTGAVTCLSQPG Trigger: TCCTGGCTGGGAGAGACAAGTCACAGCGCCTGTGGGAACCTCTCAGGGTGGTCTTCCAGCGGGCTCTCCGGGATGGTGCGGAGCCGGGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR CCA 90 bp | CTGCTAGCAGCGTCCCCCGGCTCCGCACCATCCCGGAGAGCCCGCTaGAAGACCACCCTGAGAGGTTCCCACAGGCGCTGTGACTTGTCT | + |
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Preference number: 1 (lower is better) Translates to: LLAASPGSAPSRRAR*KTTLRGSHRRCDLS Trigger: AGACAAGTCACAGCGCCTGTGGGAACCTCTCAGGGTGGTCTTCCAGCGGGCTCTCCGGGATGGTGCGGAGCCGGGGGACGCTGCTAGCAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR GCA 90 bp | CGCCAGGACCACGTGATTGAGCTTGGCAGAGCGTTGGCGGCGCCGTaGTCGGCACTCTACGTGCAGGATGAGCGCCAGGCAGGGAAGTAC | + |
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Preference number: 1 (lower is better) Translates to: RQDHVIELGRALAAP*SALYVQDERQAGKY Trigger: GTACTTCCCTGCCTGGCGCTCATCCTGCACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR GCA 90 bp | TTGAGCTTGGCAGAGCGTTGGCGGCGCCGTGCTCGGCACTCTACGTaGAGGATGAGCGCCAGGCAGGGAAGTACCATGAGTGGGCAGAAG | + |
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Preference number: 1 (lower is better) Translates to: LSLAERWRRRARHST*RMSARQGSTMSGQK Trigger: CTTCTGCCCACTCATGGTACTTCCCTGCCTGGCGCTCATCCTGCACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR CCA 90 bp | AGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTaGCCGCTCTCTGCTGCAGCCTTGCCCCAGAAGTTGGCCTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: SCPTPALGQSVSGSY*PLSAAALPQKLASQ Trigger: CTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR GCA 90 bp | GGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCTGCTGCAGCCTTaGCCCAGAAGTTGGCCTCTCAGGATGCGTTCCCAGAGGGGCACT | + |
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Preference number: 1 (lower is better) Translates to: GRVSLEATGRSLLQP*PRSWPLRMRSQRGT Trigger: AGTGCCCCTCTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR GCA 90 bp | TGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCTGCTaGAGCCTTGCCCCAGAAGTTGGCCTCTCAGGATGCGTTCCCAGA | + |
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Preference number: 1 (lower is better) Translates to: CPRAECLWKLLAALC*SLAPEVGLSGCVPR Trigger: TCTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR CCA 90 bp | CTGGAAGCTACTGGCCGCTCTCTGCTGCAGCCTTGCCCCAGAAGTTaGCCTCTCAGGATGCGTTCCCAGAGGGGCACTGCATTTCCATGG | + |
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Preference number: 1 (lower is better) Translates to: LEATGRSLLQPCPRS*PLRMRSQRGTAFPW Trigger: CCATGGAAATGCAGTGCCCCTCTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR TCA 90 bp | TGGATGATACGAGGAAGACAGAGACGATCGCCAGGACCACGTGATTaGGCTTGGCAGAGCGTTGGCGGCGCCGTGCTCGGCACTCTACGT | + |
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Preference number: 1 (lower is better) Translates to: WMIRGRQRRSPGPRD*AWQSVGGAVLGTLR Trigger: ACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCGATCGTCTCTGTCTTCCTCGTATCATCCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR GCA 90 bp | TTGCCCCAGAAGTTGGCCTCTCAGGATGCGTTCCCAGAGGGGCACTaGATTTCCATGGTGACCGTGTTGGGTGTGCTGCTAGCAGCGTCC | + |
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Preference number: 1 (lower is better) Translates to: LPQKLASQDAFPEGH*ISMVTVLGVLLAAS Trigger: GGACGCTGCTAGCAGCACACCCAACACGGTCACCATGGAAATGCAGTGCCCCTCTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR CCA 90 bp | GCCTGGAAGATGCTGAGTGCAGTCAGCTACCCAGAGCTGGCTGGTTaGGGTGGGTGGGTGGGGTCAGAAAAGCAGTCAGCTACCCATGGT | + |
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Preference number: 1 (lower is better) Translates to: AWKMLSAVSYPELAG*GGWVGSEKQSATHG Trigger: ACCATGGGTAGCTGACTGCTTTTCTGACCCCACCCACCCACCCCAACCAGCCAGCTCTGGGTAGCTGACTGCACTCAGCATCTTCCAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| 3UTR TCA 90 bp | AGCCCAGGAAGGTCCCCATGTTCAGGAGAGCAATCACGGCCTTGCTaGAGAGGTACATCCCATCGGCGCTGGCCAGGTGCAGGAAGTAGA | + |
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Preference number: 1 (lower is better) Translates to: SPGRSPCSGEQSRPC*RGTSHRRWPGAGSR Trigger: TCTACTTCCTGCACCTGGCCAGCGCCGATGGGATGTACCTCTTCAGCAAGGCCGTGATTGCTCTCCTGAACATGGGGACCTTCCTGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR GCA 90 bp | ATTGAGGACTTAGCAGTGGACTACAGTGGCCTGGAAGATGCTGAGTaGAGTCAGCTACCCAGAGCTGGCTGGTTGGGGTGGGTGGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: IEDLAVDYSGLEDAE*SQLPRAGWLGWVGG Trigger: CCCACCCACCCACCCCAACCAGCCAGCTCTGGGTAGCTGACTGCACTCAGCATCTTCCAGGCCACTGTAGTCCACTGCTAAGTCCTCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| 3UTR GCA 90 bp | GGCAGAAGAGAAAGAACAGCAAGATGCCCAGGGCGATGTCCATGTTaGGGCAGACTGTACCAGGGGCCTCGTGGCCCAGGAACATACAGA | + |
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Preference number: 1 (lower is better) Translates to: GRRERTARCPGRCPC*GRLYQGPRGPGTYR Trigger: TCTGTATGTTCCTGGGCCACGAGGCCCCTGGTACAGTCTGCCGCAACATGGACATCGCCCTGGGCATCTTGCTGTTCTTTCTCTTCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR CCA 90 bp | GGATCTGGAAGACCCAGAAGAGGAACCAGTCGATCCCCAAGTAGATaGATGATACGAGGAAGACAGAGACGATCGCCAGGACCACGTGAT | + |
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Preference number: 1 (lower is better) Translates to: GSGRPRRGTSRSPSR*MIRGRQRRSPGPRD Trigger: ATCACGTGGTCCTGGCGATCGTCTCTGTCTTCCTCGTATCATCCATCTACTTGGGGATCGACTGGTTCCTCTTCTGGGTCTTCCAGATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | CCCTGGCAGCACAGGGGCAGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTCTACTGGCCGCTCTCTaGTGCAGCCTTGCCCCAGAA | + |
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Preference number: 2 (lower is better) Translates to: PWQHRGSCPTPALGQSVSLLAAL*CSLAPE Trigger: TTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAG...AGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCTGCCCCTGTGCTGCCAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR CAA 90 bp | GACAGAGACGATCGCCAGGACCACGTGATTGAGCTTGGCAGAGCGTaGGCGGCGCCGTGCTCGGCACTCTACGTGCAGGATGAGCGCCAG | + |
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Preference number: 2 (lower is better) Translates to: DRDDRQDHVIELGRA*AAPCSALYVQDERQ Trigger: CTGGCGCTCATCCTGCACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCGATCGTCTCTGTC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | GGGTTTGTTCTGATGCAGCCTTGGGAGGCTGAACAACTCCCTGGGGGTGGGGCTCAGCACAGGGGCAGCTaGCCTACTCCTGCCCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: GFVLMQPWEAEQLPGGGAQHRGS*PTPALG Trigger: CCCGAGGGCAGGAGTAGGGCAGCTGCCCCTGTGCTG...AGCCCCACCCCCAGGGAGTTGTTCAGCCTCCCAAGGCTGCATCAGAACAAACCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGCCTTGCCCCAGAAGTTGGCCTCTCAGGATGCGTTCCCAGAGGGGCACTGCTCAGCTACCCAGAGCTaGCTGGTTGGGGTGGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: AALPQKLASQDAFPEGHCSATQS*LVGVGG Trigger: CCCACCCACCCCAACCAGCCAGCTCTGGGTAGCTGA...GCAGTGCCCCTCTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTTTGTTCTGATGCAGCCTTGGGAGGCTGAACAACTCCCTGGGGGTGGGGCTAGCTTGGCAGAGCGTTaGCGGCGCCGTGCTCGGCAC | + |
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Preference number: 2 (lower is better) Translates to: GFVLMQPWEAEQLPGGGASLAER*RRRARH Trigger: GTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCT...AGCCCCACCCCCAGGGAGTTGTTCAGCCTCCCAAGGCTGCATCAGAACAAACCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCAGGAAGGTCCCCATGTTCAGGAGAGCAATCACGGCCTTGCTGAAGAGGTACAGCACAGGGGCAGCTaGCCTACTCCTGCCCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: AQEGPHVQESNHGLAEEVQHRGS*PTPALG Trigger: CCCGAGGGCAGGAGTAGGGCAGCTGCCCCTGTGCTG...TACCTCTTCAGCAAGGCCGTGATTGCTCTCCTGAACATGGGGACCTTCCTGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGACCACGTGATTGAGCTTGGCAGAGCGTTGGCGGCGCCGTGCTCGGCACTCGTCACAGAAGCAGAATaGTTGGGGAGCAGAGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: QDHVIELGRALAAPCSALVTEAE*LGSRGH Trigger: GTGGCCTCTGCTCCCCAACCATTCTGCTTCTGTGAC...GAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCAGATACACAAGTCAGTaGCGTACTCGGGGAAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: LPYSCPRAECLWKLLAALRYTSQ*RTRGRG Trigger: CCCCCTTCCCCGAGTACGTCACTGACTTGTGTATCT...GAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR CAA 90 bp | AATGATAGCATCCAGAGCAGGGCACAGACCCCAGCTGACAGGCGCTaGGGCCTCCGACGCCAGTACCAGGTGGGGAAGATGACAGACACA | + |
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Preference number: 2 (lower is better) Translates to: NDSIQSRAQTPADRR*GLRRQYQVGKMTDT Trigger: TGTGTCTGTCATCTTCCCCACCTGGTACTGGCGTCGGAGGCCCAAGCGCCTGTCAGCTGGGGTCTGTGCCCTGCTCTGGATGCTATCATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | AGGTGGCTGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTACTGGCCGCTCTCTaGTGCAGCCTTGCCCCAGAA | + |
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Preference number: 2 (lower is better) Translates to: RWLLSLLATPDKSVKAGLLLAAL*CSLAPE Trigger: TTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAG...AAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAGCCACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCGTTTGCAGAGTGCAATaGCAGTGGACAGGACCCAGT | + |
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Preference number: 2 (lower is better) Translates to: LPYSCPRAECLWKLLAALVCRVQ*QWTGPS Trigger: ACTGGGTCCTGTCCACTGGCATTGCACTCTGCAAAC...GAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | AGGTGGCTGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTGTCTCTGGAAGCTACTaGCCGCTCTCTGCTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: RWLLSLLATPDKSVKAGLVSGSY*PLSAAA Trigger: GGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGAC...AAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAGCCACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR CAA 90 bp | GGGCAGAAGAGAAAGAACAGCAAGATGCCCAGGGCGATGTCCATGTaGCGGCAGACTGTACCAGGGGCCTCGTGGCCCAGGAACATACAG | + |
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Preference number: 2 (lower is better) Translates to: GQKRKNSKMPRAMSM*RQTVPGASWPRNIQ Trigger: CTGTATGTTCCTGGGCCACGAGGCCCCTGGTACAGTCTGCCGCAACATGGACATCGCCCTGGGCATCTTGCTGTTCTTTCTCTTCTGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCGCAACTTTGGTACACTaGGTCACAGAAGCAGAATGG | + |
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Preference number: 2 (lower is better) Translates to: LPYSCPRAECLWKLLAALATLVH*VTEAEW Trigger: CCATTCTGCTTCTGTGACTCAGTGTACCAAAGTTGC...GAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGGAAGATATAGTTTGTaGCAGCTGGCGGAGGGAGCG | + |
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Preference number: 2 (lower is better) Translates to: LLSLLATPDKSVKAGLLPGRYSL*QLAEGA Trigger: CGCTCCCTCCGCCAGCTGTCACAAACTATATCTTCC...AGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCGTTTGGCACTGCTGTTaGTGCAGATACACAAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: SCPTPALGQSVSGSYWPLVWHCC*CRYTSQ Trigger: CTGACTTGTGTATCTGCATCAACAGCAGTGCCAAAC...GAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | ATGCCAGTGGACAGGACCCAGTTCCAGATAGCACCGTTCTCTAGGGTTTGTTCTCTGTCCAGAGGTGGCTaGTCAGCCTCCTGGCCACCC | + |
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Preference number: 2 (lower is better) Translates to: MPVDRTQFQIAPFSRVCSLSRGG*SASWPP Trigger: GGGTGGCCAGGAGGCTGAGCAGCCACCTCTGGACAG...AGAACAAACCCTAGAGAACGGTGCTATCTGGAACTGGGTCCTGTCCACTGGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGGCTTGTTTGCAGAGTGCAATGCCAGTGGACAGGACCCAGTTCCAGATAGCGGGCGATGTCCATGTTaGGGCAGACTGTACCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: RGLFAECNASGQDPVPDSGRCPC*GRLYQG Trigger: CCCCTGGTACAGTCTGCCGCAACATGGACATCGCCC...GCTATCTGGAACTGGGTCCTGTCCACTGGCATTGCACTCTGCAAACAAGCCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCGGGAAGTACCATGAGTaGGCAGAAGAGAAAGAACAG | + |
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Preference number: 2 (lower is better) Translates to: LPYSCPRAECLWKLLAALGKYHE*AEEKEQ Trigger: CTGTTCTTTCTCTTCTGCCCACTCATGGTACTTCCC...GAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGGGTCAGAAAAGCAGTCAGCTACCCATGGTGACAGAAGGTCCTTTCTGTGCTGGCTGGTTGGGGTaGGTGGGTGGGGTCAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: GWGQKSSQLPMVTEGPFCAGWLG*VGGVRK Trigger: TTTTCTGACCCCACCCACCCACCCCAACCAGCCAGC...ACAGAAAGGACCTTCTGTCACCATGGGTAGCTGACTGCTTTTCTGACCCCACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | TCACATGGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTGACTCACTACCCAGAGCTGGCTaGTTGGGGTGGGTGGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: SHGLPRPDPIPLKSLGDSLPRAG*LGWVGG Trigger: CCCACCCACCCACCCCAACCAGCCAGCTCTGGGTAG...TGAGTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGCAAGCCATGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | GGGTTTGTTCTGATGCAGCCTTGGGAGGCTGAACAACTCCCTGGGGGTGGGGCTGCAACTTTGGTACACTaGGTCACAGAAGCAGAATGG | + |
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Preference number: 2 (lower is better) Translates to: GFVLMQPWEAEQLPGGGAATLVH*VTEAEW Trigger: CCATTCTGCTTCTGTGACTCAGTGTACCAAAGTTGC...AGCCCCACCCCCAGGGAGTTGTTCAGCCTCCCAAGGCTGCATCAGAACAAACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | GACAGAAGGTCCTTTCTGTCTCACATGGCTTGCCAAGGCCAGATCCCATCCCATGGGCAGGGGCTTGTTTaGAGAGTGCAATGCCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: DRRSFLSHMACQGQIPSHGQGLV*RVQCQW Trigger: CCACTGGCATTGCACTCTGCAAACAAGCCCCTGCCC...ATGGGATGGGATCTGGCCTTGGCAAGCCATGTGAGACAGAAAGGACCTTCTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGGCACTACACAGGCCACTGTaGTGGATGATGAGTGACATC | + |
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Preference number: 2 (lower is better) Translates to: SASWPPLTRVLRQVFSLALHRPL*WMMSDI Trigger: GATGTCACTCATCATCCAGCACAGTGGCCTGTGTAG...TGCCAGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| 3UTR-3UTR GCA 90 bp | AAGGTCCTTTCTGTCTCACATGGCTTGCCAAGGCCAGATCCCATCCCATTAAAGGCTCGGCACTCTACGTaGAGGATGAGCGCCAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: KVLSVSHGLPRPDPIPLKARHST*RMSARQ Trigger: CTGCCTGGCGCTCATCCTGCACGTAGAGTGCCGAGC...CTTTAATGGGATGGGATCTGGCCTTGGCAAGCCATGTGAGACAGAAAGGACCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | TCACATGGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTGACTCAGGCTGCTCAGCCTCCTaGCCACCCCTGACAAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: SHGLPRPDPIPLKSLGDSGCSAS*PPLTRV Trigger: CACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAGCC...TGAGTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGCAAGCCATGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | GGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTGACTCATCAAAGCCAGGACCACGTGATTaGGCTTGGCAGAGCGTTGGC | + |
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Preference number: 2 (lower is better) Translates to: GLPRPDPIPLKSLGDSSKPGPRD*AWQSVG Trigger: GCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGG...CTTTGATGAGTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGCAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | TTAAAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGTGCAAGGCTGCTCAGCCTCCTaGCCACCCCTGACAAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: LKSLGDSSKGQGLVCRVQGCSAS*PPLTRV Trigger: CACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAGCC...TTGCACTCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTTTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGGCTTGTTTGCAGAGTGCAATGCCAGTGGACAGGACCCAGTTCCAGATAGCCCTTTCTGTCTCACATaGCTTGCCAAGGCCAGATCC | + |
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Preference number: 2 (lower is better) Translates to: RGLFAECNASGQDPVPDSPFCLT*LAKARS Trigger: GGATCTGGCCTTGGCAAGCCATGTGAGACAGAAAGG...GCTATCTGGAACTGGGTCCTGTCCACTGGCATTGCACTCTGCAAACAAGCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGTGCAATGCACATCCCATCGGCGCTaGCCAGGTGCAGGAAGTAGA | + |
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Preference number: 2 (lower is better) Translates to: KSLGDSSKGQGLVCRVQCTSHRR*PGAGSR Trigger: TCTACTTCCTGCACCTGGCCAGCGCCGATGGGATGT...GCATTGCACTCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGCACTGCTGTTGATGCAGATACACAAGTCAGTGACGTACTCGGGGAAGGGGGTCAGCTACCCATGGTaGCAGAAGGTCCTTTCTGTC | + |
|
Preference number: 2 (lower is better) Translates to: LALLLMQIHKSVTYSGKGVSYPW*QKVLSV Trigger: GACAGAAAGGACCTTCTGTCACCATGGGTAGCTGAC...CCCCTTCCCCGAGTACGTCACTGACTTGTGTATCTGCATCAACAGCAGTGCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR-3UTR GCA 90 bp | GGGTGGGGTCAGAAAAGCAGTCAGCTACCCATGGTGACAGAAGGTCCTTTCTGTCTGGAAGATGCTGAGTaGAGTCAGCTACCCAGAGCT | + |
|
Preference number: 2 (lower is better) Translates to: GWGQKSSQLPMVTEGPFCLEDAE*SQLPRA Trigger: AGCTCTGGGTAGCTGACTGCACTCAGCATCTTCCAG...ACAGAAAGGACCTTCTGTCACCATGGGTAGCTGACTGCTTTTCTGACCCCACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| 3UTR-3UTR CCA 90 bp | ATCCCATTAAAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGTACCAGGGGCCTCGTaGCCCAGGAACATACAGAAG | + |
|
Preference number: 2 (lower is better) Translates to: IPLKSLGDSSKGQGLVCRVPGAS*PRNIQK Trigger: CTTCTGTATGTTCCTGGGCCACGAGGCCCCTGGTAC...TCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTTTAATGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR-3UTR GCA 90 bp | ATCCCATTAAAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGACTGTCTCACATGGCTTaGCAAGGCCAGATCCCATCC | + |
|
Preference number: 2 (lower is better) Translates to: IPLKSLGDSSKGQGLVCRLSHMA*QGQIPS Trigger: GGATGGGATCTGGCCTTGGCAAGCCATGTGAGACAG...TCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTTTAATGGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | GCGTCCCCCGGCTCCGCACCATCCCGGAGAGCCCGCTaGAAGACCACCCTGAGAGGTTCCCACAGGCGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: ASPGSAPSRRAR*KTTLRGSHRRC Trigger: ACAGCGCCTGTGGGAACCTCTCAGGGTGGTCTTCCAGCGGGCTCTCCGGGATGGTGCGGAGCCGGGGGACGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR TCA 72 bp | CGAGGAAGACAGAGACGATCGCCAGGACCACGTGATTaGGCTTGGCAGAGCGTTGGCGGCGCCGTGCTCGGC | + |
|
Preference number: 3 (lower is better) Translates to: RGRQRRSPGPRD*AWQSVGGAVLG Trigger: GCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCGATCGTCTCTGTCTTCCTCG 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | TTCTCCCTGGCAGCACAGGGGCAGCTGCCCTACTCCTaGCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: FSLAAQGQLPYS*PRAECLWKLLA Trigger: GGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCTGCCCCTGTGCTGCCAGGGAGAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | GCAGAGCGTTGGCGGCGCCGTGCTCGGCACTCTACGTaGAGGATGAGCGCCAGGCAGGGAAGTACCATGAGT | + |
|
Preference number: 3 (lower is better) Translates to: AERWRRRARHST*RMSARQGSTMS Trigger: ACTCATGGTACTTCCCTGCCTGGCGCTCATCCTGCACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | CACGTGATTGAGCTTGGCAGAGCGTTGGCGGCGCCGTaGTCGGCACTCTACGTGCAGGATGAGCGCCAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: HVIELGRALAAP*SALYVQDERQA Trigger: TGCCTGGCGCTCATCCTGCACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTG 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCTGGCAGCACAGGGGCAGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTACAGAAGCAGAATGGTaGGGGAGCAGAGGCCACAGG | + |
|
Preference number: 3 (lower is better) Translates to: PWQHRGSCPTPALGQSVSTEAEW*GSRGHR Trigger: CCTGTGGCCTCTGCTCCCCAACCATTCTGCTTCTGT...AGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCTGCCCCTGTGCTGCCAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | ACTGGCCGCTCTCTGCTGCAGCCTTGCCCCAGAAGTTaGCCTCTCAGGATGCGTTCCCAGAGGGGCACTGCA | + |
|
Preference number: 3 (lower is better) Translates to: TGRSLLQPCPRS*PLRMRSQRGTA Trigger: TGCAGTGCCCCTCTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGGGCTTGTTTGCAGAGTGCAATGCCAGTGGACAGGACCCAGTTCCAGATAGCGAGCTTGGCAGAGCGTaGGCGGCGCCGTGCTCGGCA | + |
|
Preference number: 3 (lower is better) Translates to: RGLFAECNASGQDPVPDSELGRA*AAPCSA Trigger: TGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTC...GCTATCTGGAACTGGGTCCTGTCCACTGGCATTGCACTCTGCAAACAAGCCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | CGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCTaGTGCAGCCTTGCCCCAGAAGTTGGCCTCTCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: RAECLWKLLAAL*CSLAPEVGLSG Trigger: TCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | ACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTaGCCGCTCTCTGCTGCAGCCTTGCCCCAGAAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: TPALGQSVSGSY*PLSAAALPQKL Trigger: CAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR-3UTR CAA 90 bp | GGGTTTGTTCTGATGCAGCCTTGGGAGGCTGAACAACTCCCTGGGGGTGGGGCTTCCATGGTGACCGTGTaGGGTGTGCTGCTAGCAGCG | + |
|
Preference number: 3 (lower is better) Translates to: GFVLMQPWEAEQLPGGGASMVTV*GVLLAA Trigger: CGCTGCTAGCAGCACACCCAACACGGTCACCATGGA...AGCCCCACCCCCAGGGAGTTGTTCAGCCTCCCAAGGCTGCATCAGAACAAACCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR TCA 72 bp | CCTTTGGCTACACAGGCCACTGTGCTGGATGATGAGTaGCATCGTGGTGGCAGCCTCCAGGGGGCCAGAGTC | + |
|
Preference number: 3 (lower is better) Translates to: PLATQATVLDDE*HRGGSLQGARV Trigger: GACTCTGGCCCCCTGGAGGCTGCCACCACGATGTCACTCATCATCCAGCACAGTGGCCTGTGTAGCCAAAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| 3UTR TCA 72 bp | GATACGAGGAAGACAGAGACGATCGCCAGGACCACGTaGTTGAGCTTGGCAGAGCGTTGGCGGCGCCGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: DTRKTETIARTT*LSLAERWRRRA Trigger: AGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCGATCGTCTCTGTCTTCCTCGTATC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | TCTCTGGAAGCTACTGGCCGCTCTCTGCTGCAGCCTTaGCCCAGAAGTTGGCCTCTCAGGATGCGTTCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: SLEATGRSLLQP*PRSWPLRMRSQ Trigger: CTGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | GCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCTGCTaGAGCCTTGCCCCAGAAGTTGGCCTCTCAGGATGC | + |
|
Preference number: 3 (lower is better) Translates to: AECLWKLLAALC*SLAPEVGLSGC Trigger: GCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGACACTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR TCA 72 bp | AGGTCCCCATGTTCAGGAGAGCAATCACGGCCTTGCTaGAGAGGTACATCCCATCGGCGCTGGCCAGGTGCA | + |
|
Preference number: 3 (lower is better) Translates to: RSPCSGEQSRPC*RGTSHRRWPGA Trigger: TGCACCTGGCCAGCGCCGATGGGATGTACCTCTTCAGCAAGGCCGTGATTGCTCTCCTGAACATGGGGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | ATGCTGAGTGCAGTCAGCTACCCAGAGCTGGCTGGTTaGGGTGGGTGGGTGGGGTCAGAAAAGCAGTCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: MLSAVSYPELAG*GGWVGSEKQSA Trigger: AGCTGACTGCTTTTCTGACCCCACCCACCCACCCCAACCAGCCAGCTCTGGGTAGCTGACTGCACTCAGCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| 3UTR TCA 72 bp | GACCCTACCATGCTGGTGAGGGCAACTTTGGTACACTaGGTCACAGAAGCAGAATGGTTGGGGAGCAGAGGC | + |
|
Preference number: 3 (lower is better) Translates to: DPTMLVRATLVH*VTEAEWLGSRG Trigger: GCCTCTGCTCCCCAACCATTCTGCTTCTGTGACTCAGTGTACCAAAGTTGCCCTCACCAGCATGGTAGGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR GCA 72 bp | GTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGTaGAATGCCAGTGGACAGGACCCAGTTCCAGATAGC | + |
|
Preference number: 3 (lower is better) Translates to: VTHQRGRGLFAE*NASGQDPVPDS Trigger: GCTATCTGGAACTGGGTCCTGTCCACTGGCATTGCACTCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | GATACACAAGTCAGTGACGTACTCGGGGAAGGGGGCTaGGATCTGGAAGACCCAGAAGAGGAACCAGTCGAT | + |
|
Preference number: 3 (lower is better) Translates to: DTQVSDVLGEGG*DLEDPEEEPVD Trigger: ATCGACTGGTTCCTCTTCTGGGTCTTCCAGATCCCAGCCCCCTTCCCCGAGTACGTCACTGACTTGTGTATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR-3UTR CAA 90 bp | ATCCCATTAAAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGCCTTGCCCCAGAAGTaGGCCTCTCAGGATGCGTTC | + |
|
Preference number: 3 (lower is better) Translates to: IPLKSLGDSSKGQGLVCRALPQK*ASQDAF Trigger: GAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGC...TCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTTTAATGGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR TCA 72 bp | GCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTaGCTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGT | + |
|
Preference number: 3 (lower is better) Translates to: AKARSHPIKVTR*LIKGAGACLQS Trigger: ACTCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | AGACCCAGAAGAGGAACCAGTCGATCCCCAAGTAGATaGATGATACGAGGAAGACAGAGACGATCGCCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: RPRRGTSRSPSR*MIRGRQRRSPG Trigger: TCCTGGCGATCGTCTCTGTCTTCCTCGTATCATCCATCTACTTGGGGATCGACTGGTTCCTCTTCTGGGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGTGCAATGCGAGAAAGGGGTCCTCTaGATGGAGAAGCCGAAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: KSLGDSSKGQGLVCRVQCEKGVL*MEKPKN Trigger: GTTTTTCGGCTTCTCCATCAAGAGGACCCCTTTCTC...GCATTGCACTCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR CCA 72 bp | CTACCCATGGTGACAGAAGGTCCTTTCTGTCTCACATaGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTC | + |
|
Preference number: 3 (lower is better) Translates to: LPMVTEGPFCLT*LAKARSHPIKV Trigger: GACTTTAATGGGATGGGATCTGGCCTTGGCAAGCCATGTGAGACAGAAAGGACCTTCTGTCACCATGGGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033386.12 ENSMUST00000117718.2 |
||
| CDS-3UTR GCA 90 bp | CCCTGGCAGCACAGGGGCAGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGCTCGGCACTCTACGTaGAGGATGAGCGCCAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: PWQHRGSCPTPALGQSVSARHST*RMSARQ Trigger: CTGCCTGGCGCTCATCCTGCACGTAGAGTGCCGAGC...AGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCTGCCCCTGTGCTGCCAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| 3UTR CAA 72 bp | ATCCAGAGCAGGGCACAGACCCCAGCTGACAGGCGCTaGGGCCTCCGACGCCAGTACCAGGTGGGGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: IQSRAQTPADRR*GLRRQYQVGKM Trigger: CATCTTCCCCACCTGGTACTGGCGTCGGAGGCCCAAGCGCCTGTCAGCTGGGGTCTGTGCCCTGCTCTGGAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| CDS-3UTR CCA 90 bp | GGTGGCTGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCAGCTTGGCAGAGCGTTaGCGGCGCCGTGCTCGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: GGCSASWPPLTRVLRQVFSLAER*RRRARH Trigger: GTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCT...GAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAGCCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| 3UTR CAA 72 bp | GATCGCCAGGACCACGTGATTGAGCTTGGCAGAGCGTaGGCGGCGCCGTGCTCGGCACTCTACGTGCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: DRQDHVIELGRA*AAPCSALYVQD Trigger: ATCCTGCACGTAGAGTGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCGATC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| CDS-3UTR TCA 90 bp | GCAGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCACTCTACGTGCAGGATaGGCGCCAGGCAGGGAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: AAALLLPSGRVSLEATGRTLRAG*APGREV Trigger: TACTTCCCTGCCTGGCGCTCATCCTGCACGTAGAGT...GCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR CCA 90 bp | TGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGCAGCTGACAGGCGCTTaGGCCTCCGACGCCAGTACC | + |
|
Preference number: 4 (lower is better) Translates to: CSASWPPLTRVLRQVFSLQLTGA*ASDAST Trigger: GGTACTGGCGTCGGAGGCCCAAGCGCCTGTCAGCTG...CAGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR CCA 90 bp | GGTGGCTGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCGCCAGGCGGGCACAGTaGCCCCTCTTGTTCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: GGCSASWPPLTRVLRQVFARRAQ*PLLFWL Trigger: CAACCAGAACAAGAGGGGCCACTGTGCCCGCCTGGC...GAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAGCCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| CDS-3UTR TCA 90 bp | TCTCTGGAAGCTACTGGCCGCTCTCTGCTGCAGCCTTGCCCCAGAAGTTGGCCTCCAGGACCACGTGATTaGGCTTGGCAGAGCGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SLEATGRSLLQPCPRSWPPGPRD*AWQSVG Trigger: GCCAACGCTCTGCCAAGCTCAATCACGTGGTCCTGG...AGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR TCA 90 bp | TGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGGCTGGAAGACCACCCTaGGAGGTTCCCACAGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: CSASWPPLTRVLRQVFSLAGRPP*EVPTGA Trigger: AGCGCCTGTGGGAACCTCTCAGGGTGGTCTTCCAGC...CAGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR GCA 90 bp | CTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCCAGAGGGGTGGGGAGTaGTTGCTGAGCAAGTATTCG | + |
|
Preference number: 4 (lower is better) Translates to: LPYSCPRAECLWKLLAALQRGGE*LLSKYS Trigger: CGAATACTTGCTCAGCAAGCACTCCCCACCCCTCTG...GAGAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR CAA 72 bp | AGAAAGAACAGCAAGATGCCCAGGGCGATGTCCATGTaGCGGCAGACTGTACCAGGGGCCTCGTGGCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RKNSKMPRAMSM*RQTVPGASWPR Trigger: CCTGGGCCACGAGGCCCCTGGTACAGTCTGCCGCAACATGGACATCGCCCTGGGCATCTTGCTGTTCTTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| 3UTR CAA 72 bp | GTCTCTGGAAGCTACTGGCCGCTCTCTGCTGCAGCCTaGCCCCAGAAGTTGGCCTCTCAGGATGCGTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: VSGSYWPLSAAA*PQKLASQDAFP Trigger: TGGGAACGCATCCTGAGAGGCCAACTTCTGGGGCAAGGCTGCAGCAGAGAGCGGCCAGTAGCTTCCAGAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| CDS-3UTR CCA 90 bp | CTGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTTCCACGGCAGAGGGGTaGGGAGTGCTTGCTGAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LLSLLATPDKSVKAGLLPSTAEG*GVLAEQ Trigger: TTGCTCAGCAAGCACTCCCCACCCCTCTGCCGTGGA...AGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| CDS-3UTR CCA 90 bp | TGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGGTACCAGGGGCCTCGTaGCCCAGGAACATACAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: CSASWPPLTRVLRQVFSLVPGAS*PRNIQK Trigger: CTTCTGTATGTTCCTGGGCCACGAGGCCCCTGGTAC...CAGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR TCA 90 bp | TCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGGCAGGAAGATATAGTTTGTaGCAGCTGGCGGAGGGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SASWPPLTRVLRQVFSLAGRYSL*QLAEGA Trigger: CGCTCCCTCCGCCAGCTGTCACAAACTATATCTTCC...TGCCAGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR CCA 90 bp | CAGAAGCAGAATGGTTGGGGAGCAGAGGCCACAGGGTCTGTCCAGAGGTGGCTGCCCTCTTGTTCTGGTTaGTGGAGTGAGCTTCCCATG | + |
|
Preference number: 4 (lower is better) Translates to: QKQNGWGAEATGSVQRWLPSCSG*WSELPM Trigger: CATGGGAAGCTCACTCCACCAACCAGAACAAGAGGG...CAGCCACCTCTGGACAGACCCTGTGGCCTCTGCTCCCCAACCATTCTGCTTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
||
| CDS-3UTR TCA 90 bp | CAGAAGCAGAATGGTTGGGGAGCAGAGGCCACAGGGTCTGTCCAGAGGTGGCTGAGAAAGGGGTCCTCTTaGTGGAGAAGCCGAAAAACC | + |
|
Preference number: 4 (lower is better) Translates to: QKQNGWGAEATGSVQRWLRKGSS*WRSRKT Trigger: GGTTTTTCGGCTTCTCCATCAAGAGGACCCCTTTCT...CAGCCACCTCTGGACAGACCCTGTGGCCTCTGCTCCCCAACCATTCTGCTTCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR CCA 90 bp | AAGTCACTAGGTGACTCATCAAAGGGGCAGGGGCTTGTTTGCAGAGTGCAATGCTCCCGGAGAGCCCGCTaGAAGACCACCCTGAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: KSLGDSSKGQGLVCRVQCSRRAR*KTTLRG Trigger: ACCTCTCAGGGTGGTCTTCCAGCGGGCTCTCCGGGA...GCATTGCACTCTGCAAACAAGCCCCTGCCCCTTTGATGAGTCACCTAGTGACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
||
| CDS-3UTR GCA 90 bp | AAGCAGTCAGCTACCCATGGTGACAGAAGGTCCTTTCTGTCTCACATGGCTTGCGGGCGATGTCCATGTTaGGGCAGACTGTACCAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: KQSATHGDRRSFLSHMACGRCPC*GRLYQG Trigger: CCCCTGGTACAGTCTGCCGCAACATGGACATCGCCC...GCAAGCCATGTGAGACAGAAAGGACCTTCTGTCACCATGGGTAGCTGACTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CCA 90 bp | AGTCAGCTACCCATGGTGACAGAAGGTCCTTTCTGTCTCACATGGCTTGCCAAGCTCGGGGAAGGGGGCTaGGATCTGGAAGACCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: SQLPMVTEGPFCLTWLAKLGEGG*DLEDPE Trigger: TTCTGGGTCTTCCAGATCCCAGCCCCCTTCCCCGAG...CTTGGCAAGCCATGTGAGACAGAAAGGACCTTCTGTCACCATGGGTAGCTGACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR TCA 90 bp | GGGTGGGGTCAGAAAAGCAGTCAGCTACCCATGGTGACAGAAGGTCCTTTCTGTAGATACACAAGTCAGTaGCGTACTCGGGGAAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: GWGQKSSQLPMVTEGPFCRYTSQ*RTRGRG Trigger: CCCCCTTCCCCGAGTACGTCACTGACTTGTGTATCT...ACAGAAAGGACCTTCTGTCACCATGGGTAGCTGACTGCTTTTCTGACCCCACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR TCA 90 bp | GGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTGACTCATCAAAGATCGCCAGGACCACGTaGTTGAGCTTGGCAGAGCGT | + |
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Preference number: 4 (lower is better) Translates to: GLPRPDPIPLKSLGDSSKIARTT*LSLAER Trigger: ACGCTCTGCCAAGCTCAATCACGTGGTCCTGGCGAT...CTTTGATGAGTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGCAAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR GCA 90 bp | TTAGCAGTGGACTACAGTGGCCTGGAAGATGCTGAGTGCAGTCAGCTACCCAGAGAAAGAACAGCAAGATaGCCAGGGCGATGTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: LAVDYSGLEDAECSQLPRERTAR*PGRCPC Trigger: ACATGGACATCGCCCTGGGCATCTTGCTGTTCTTTC...TCTGGGTAGCTGACTGCACTCAGCATCTTCCAGGCCACTGTAGTCCACTGCTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CCA 90 bp | TACCATGCTGGTGAGGGCAACTTTGGTACACTGAGTCACAGAAGCAGAATGGTTACATCCCATCGGCGCTaGCCAGGTGCAGGAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: YHAGEGNFGTLSHRSRMVTSHRR*PGAGSR Trigger: TCTACTTCCTGCACCTGGCCAGCGCCGATGGGATGT...AACCATTCTGCTTCTGTGACTCAGTGTACCAAAGTTGCCCTCACCAGCATGGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CCA 90 bp | GACAGAAGGTCCTTTCTGTCTCACATGGCTTGCCAAGGCCAGATCCCATCCCATACATCTTGTTCTGGTTaGTGGAGTGAGCTTCCCATG | + |
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Preference number: 4 (lower is better) Translates to: DRRSFLSHMACQGQIPSHTSCSG*WSELPM Trigger: CATGGGAAGCTCACTCCACCAACCAGAACAAGATGT...ATGGGATGGGATCTGGCCTTGGCAAGCCATGTGAGACAGAAAGGACCTTCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR TCA 90 bp | AGTCAGCTACCCATGGTGACAGAAGGTCCTTTCTGTCTCACATGGCTTGCCAAGGTTTGGCACTGCTGTTaGTGCAGATACACAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: SQLPMVTEGPFCLTWLAKVWHCC*CRYTSQ Trigger: CTGACTTGTGTATCTGCATCAACAGCAGTGCCAAAC...CTTGGCAAGCCATGTGAGACAGAAAGGACCTTCTGTCACCATGGGTAGCTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CCA 90 bp | TCACATGGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTGACTCAGGGAAGTACCATGAGTaGGCAGAAGAGAAAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: SHGLPRPDPIPLKSLGDSGKYHE*AEEKEQ Trigger: CTGTTCTTTCTCTTCTGCCCACTCATGGTACTTCCC...TGAGTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGCAAGCCATGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CAA 90 bp | AGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCTCTCCATGGTGACCGTGTaGGGTGTGCTGCTAGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: SCPTPALGQSVSGSYWPLSMVTV*GVLLAA Trigger: CGCTGCTAGCAGCACACCCAACACGGTCACCATGGA...GAGCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CAA 90 bp | GTCTCACATGGCTTGCCAAGGCCAGATCCCATCCCATTAAAGTCACTAGGTGACGAGCTTGGCAGAGCGTaGGCGGCGCCGTGCTCGGCA | + |
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Preference number: 5 (lower is better) Translates to: VSHGLPRPDPIPLKSLGDELGRA*AAPCSA Trigger: TGCCGAGCACGGCGCCGCCAACGCTCTGCCAAGCTC...GTCACCTAGTGACTTTAATGGGATGGGATCTGGCCTTGGCAAGCCATGTGAGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CAA 90 bp | GCAGCTGCCCTACTCCTGCCCTCGGGCAGAGTGTCTCTGGAAGCTACTGGCCGCGGTTTGGCACTGCTGTaGATGCAGATACACAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: AAALLLPSGRVSLEATGRGLALL*MQIHKS Trigger: TGACTTGTGTATCTGCATCAACAGCAGTGCCAAACC...GCGGCCAGTAGCTTCCAGAGACACTCTGCCCGAGGGCAGGAGTAGGGCAGCTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS-3UTR CAA 90 bp | TGCTCAGCCTCCTGGCCACCCCTGACAAGAGTGTTAAGGCAGGTCTTCTCCCTGGAGAAAGGGGTCCTCTaGATGGAGAAGCCGAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: CSASWPPLTRVLRQVFSLEKGVL*MEKPKN Trigger: GTTTTTCGGCTTCTCCATCAAGAGGACCCCTTTCTC...CAGGGAGAAGACCTGCCTTAACACTCTTGTCAGGGGTGGCCAGGAGGCTGAGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS CCA 90 bp | CAGGCCACACAGGCAAAGCAGCAGGAAGATATAGTTTGTGACAGCTaGCGGAGGGAGCGTAGCAATCTGCTCAATGGTCAGAAATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: QATQAKQQEDIVCDS*RRERSNLLNGQKSS Trigger: AGAGGATTTCTGACCATTGAGCAGATTGCTACGCTCCCTCCGCCAGCTGTCACAAACTATATCTTCCTGCTGCTTTGCCTGTGTGGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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| CDS GCA 72 bp | GCAAGTATTCGGAGCAGAGTTCAGATCCCCAGTCTCTaGCAGGCGGGCACAGTGGCCCCTCTTGTTCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: ASIRSRVQIPSL*QAGTVAPLVLV Trigger: AACCAGAACAAGAGGGGCCACTGTGCCCGCCTGGCAGAGACTGGGGATCTGAACTCTGCTCCGAATACTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| CDS CAA 72 bp | AGTGAAGGCAGTCCACGGCAGAGGGGTGGGGAGTGCTaGCTGAGCAAGTATTCGGAGCAGAGTTCAGATCCC | + |
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Preference number: 6 (lower is better) Translates to: SEGSPRQRGGEC*LSKYSEQSSDP Trigger: GGGATCTGAACTCTGCTCCGAATACTTGCTCAGCAAGCACTCCCCACCCCTCTGCCGTGGACTGCCTTCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| CDS GCA 72 bp | CCAAGTGAAGGCAGTCCACGGCAGAGGGGTGGGGAGTaGTTGCTGAGCAAGTATTCGGAGCAGAGTTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: PSEGSPRQRGGE*LLSKYSEQSSD Trigger: ATCTGAACTCTGCTCCGAATACTTGCTCAGCAAGCACTCCCCACCCCTCTGCCGTGGACTGCCTTCACTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117718.2 |
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| CDS CCA 72 bp | CAGGCAAAGCAGCAGGAAGATATAGTTTGTGACAGCTaGCGGAGGGAGCGTAGCAATCTGCTCAATGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: QAKQQEDIVCDS*RRERSNLLNGQ Trigger: CTGACCATTGAGCAGATTGCTACGCTCCCTCCGCCAGCTGTCACAAACTATATCTTCCTGCTGCTTTGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033386.12 |
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