Pregenerated sensors for MRGPRA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052303

Ensembl transcript IDs: ENSMUST00000073793.5, ENSMUST00000186456.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	ATCACAGCTCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGTCCTGCAGTGCACTCTaGAGAACCATTTTGAGGGTC	+
Preference number: 2 (lower is better) Translates to: ITALLCFLTSPPCFQVSQSCSAL*RTILRV Trigger: GACCCTCAAAATGGTTCTCCAGAGTGCACTGCAGGA...CTGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGAGCTGTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR TCA 90 bp	TCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGGAGTGTCCTGCCGTTGCCGAGGTTaGGGTGTTCAGGGCCCAAAA	+
Preference number: 4 (lower is better) Translates to: SALFLDISTMFSGVSGVSCRCRG*GVQGPK Trigger: TTTTGGGCCCTGAACACCTCAACCTCGGCAACGGCA...GGACACTCCTGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR TCA 90 bp	ATCACAGCTCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGGCTCTGTGGAAGCTATaGTGTGGCAGAGGAGGAAGA	+
Preference number: 4 (lower is better) Translates to: ITALLCFLTSPPCFQVSQALWKL*CGRGGR Trigger: TCTTCCTCCTCTGCCACATCATAGCTTCCACAGAGC...CTGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGAGCTGTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR GCA 90 bp	TCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGGAGTGTCCCTATGCATGGTTTCGTaGACTGGATTTGTTGTTGTG	+
Preference number: 4 (lower is better) Translates to: SALFLDISTMFSGVSGVSLCMVS*TGFVVV Trigger: CACAACAACAAATCCAGTGCACGAAACCATGCATAG...GGACACTCCTGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR CCA 90 bp	TCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGGAGTGTCCAGTCATCTTCATATTTaGTATCCAAGAAGCCGCAGA	+
Preference number: 4 (lower is better) Translates to: SALFLDISTMFSGVSGVSSHLHI*YPRSRR Trigger: TCTGCGGCTTCTTGGATACCAAATATGAAGATGACT...GGACACTCCTGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR GCA 90 bp	CATCACAGCTCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGAAAATGTGAGAATATaGTCTGTGGAAGCTATGATG	+
Preference number: 4 (lower is better) Translates to: HHSSALFLDISTMFSGVSENVRI*SVEAMM Trigger: CATCATAGCTTCCACAGAGCATATTCTCACATTTTC...TGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGAGCTGTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR GCA 90 bp	CTTCATCACAGCTCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCAATACCTATACAGAATaGAGAGCAATAGAGACAGGA	+
Preference number: 4 (lower is better) Translates to: LHHSSALFLDISTMFSGVNTYTE*RAIETG Trigger: TCCTGTCTCTATTGCTCTGCATTCTGTATAGGTATT...GACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGAGCTGTGATGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS TCA 90 bp	GGTTTCGTGCACTGGATTTGTTGTTGTGAGTGCCGTTGCCGAGGTTaGGGTGTTCAGGGCCCAAAACCCTGCACTGGTGCTGCTTTCCCC	+
Preference number: 5 (lower is better) Translates to: GFVHWICCCECRCRG*GVQGPKPCTGAAFP Trigger: GGGGAAAGCAGCACCAGTGCAGGGTTTTGGGCCCTGAACACCTCAACCTCGGCAACGGCACTCACAACAACAAATCCAGTGCACGAAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS GCA 90 bp	ACGATCATCAAGTTTGTTATCAGAATCCTGATGCTGATACTTCTATaGATGGTTTCGTGCACTGGATTTGTTGTTGTGAGTGCCGTTGCC	+
Preference number: 5 (lower is better) Translates to: TIIKFVIRILMLILL*MVSCTGFVVVSAVA Trigger: GGCAACGGCACTCACAACAACAAATCCAGTGCACGAAACCATGCATAGAAGTATCAGCATCAGGATTCTGATAACAAACTTGATGATCGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS-3UTR CAA 90 bp	TCTGCTTTGTTTCTTGACATCTCCACCATGTTTTCAGGTGTCTCAGGAGTGTCCTTGATAAAGATACTGTaGGGGGAGGAAAATGTGAGA	+
Preference number: 5 (lower is better) Translates to: SALFLDISTMFSGVSGVSLIKIL*GEENVR Trigger: TCTCACATTTTCCTCCCCCAACAGTATCTTTATCAA...GGACACTCCTGAGACACCTGAAAACATGGTGGAGATGTCAAGAAACAAAGCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS TCA 72 bp	CACTGGATTTGTTGTTGTGAGTGCCGTTGCCGAGGTTaGGGTGTTCAGGGCCCAAAACCCTGCACTGGTGCT	+
Preference number: 6 (lower is better) Translates to: HWICCCECRCRG*GVQGPKPCTGA Trigger: AGCACCAGTGCAGGGTTTTGGGCCCTGAACACCTCAACCTCGGCAACGGCACTCACAACAACAAATCCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS GCA 72 bp	GCGCTCAATGCTGATGGCACTGAGCATGTTCAGGCCTaGGATGTAGAGAAGCACCCTGAAGGTGTAAAGGCA	+
Preference number: 6 (lower is better) Translates to: ALNADGTEHVQA*DVEKHPEGVKA Trigger: TGCCTTTACACCTTCAGGGTGCTTCTCTACATCGCAGGCCTGAACATGCTCAGTGCCATCAGCATTGAGCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073793.5 ENSMUST00000186456.2
CDS GCA 72 bp	ATAAAGATACTGTTGGGGGAGGAAAATGTGAGAATATaGTCTGTGGAAGCTATGATGTGGCAGAGGAGGAAG	+
Preference number: 6 (lower is better) Translates to: IKILLGEENVRI*SVEAMMWQRRK Trigger: CTTCCTCCTCTGCCACATCATAGCTTCCACAGAGCATATTCTCACATTTTCCTCCCCCAACAGTATCTTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073793.5 ENSMUST00000186456.2
CDS GCA 72 bp	AAGTTTGTTATCAGAATCCTGATGCTGATACTTCTATaGATGGTTTCGTGCACTGGATTTGTTGTTGTGAGT	+
Preference number: 6 (lower is better) Translates to: KFVIRILMLILL*MVSCTGFVVVS Trigger: ACTCACAACAACAAATCCAGTGCACGAAACCATGCATAGAAGTATCAGCATCAGGATTCTGATAACAAACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186456.2
CDS CCA 72 bp	AGTTCATTGCTAGACACCCATAGTCATCTTCATATTTaGTATCCAAGAAGCCGCAGAAATACCTATACAGAA	+
Preference number: 6 (lower is better) Translates to: SSLLDTHSHLHI*YPRSRRNTYTE Trigger: TTCTGTATAGGTATTTCTGCGGCTTCTTGGATACCAAATATGAAGATGACTATGGGTGTCTAGCAATGAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073793.5 ENSMUST00000186456.2