Pregenerated sensors for MREG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039395Ensembl transcript IDs: ENSMUST00000048860.9
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACTTCTACTGTCTGGCTCACCTATACTTGTAAATAACACCCCCTaGTGCTCAGAGGGACGCCCCAAACAGCATCTCAGCTGCTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: TLLLSGSPILVNNTP*CSEGRPKQHLSCCR Trigger: CCTGCAGCAGCTGAGATGCTGTTTGGGGCGTCCCTCTGAGCATCAGGGGGTGTTATTTACAAGTATAGGTGAGCCAGACAGTAGAAGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR TCA 90 bp | TATTTCTACTGTTCTCAGAAGTCTACAGATAAATCCCACAAATCTTaGAAGGCTTTTCAACAGAACGAGCCCCGGTCCTCTTGGCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: YFYCSQKSTDKSHKS*KAFQQNEPRSSWQA Trigger: AGCTTGCCAAGAGGACCGGGGCTCGTTCTGTTGAAAAGCCTTTCAAGATTTGTGGGATTTATCTGTAGACTTCTGAGAACAGTAGAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR-3UTR CCA 90 bp | ATCCCACAAATCTTGAAAGGCTTTTCAACAGAACGAGCCCCGGTCCTCTTGGCAGGGCTTGGCATTCTGTaGGCAAGCTGCACTGCTAGC | + |
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Preference number: 2 (lower is better) Translates to: IPQILKGFSTERAPVLLAGLGIL*ASCTAS Trigger: GCTAGCAGTGCAGCTTGCCCACAGAATGCCAAGCCC...TGCCAAGAGGACCGGGGCTCGTTCTGTTGAAAAGCCTTTCAAGATTTGTGGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR-3UTR CCA 90 bp | CCTCTGTCAGCATACACCACTGCCTGCATACCTGCAAGTCTGCACCAAAAGGTCGAGGCCACAGGTTCTTaGAACCTGACTATCCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: PLSAYTTACIPASLHQKVEATGS*NLTIQE Trigger: TTCCTGGATAGTCAGGTTCCAAGAACCTGTGGCCTC...GACCTTTTGGTGCAGACTTGCAGGTATGCAGGCAGTGGTGTATGCTGACAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CAA 90 bp | AAACAGGTCACGCGAGGCCTAGGGTTTTATGAAGTCTGGGGCTCCTaGTCTAGTATTACACCTAATAATGACTACCTTGAAGTTGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: KQVTRGLGFYEVWGS*SSITPNNDYLEVGD Trigger: ATCACCAACTTCAAGGTAGTCATTATTAGGTGTAATACTAGACAAGGAGCCCCAGACTTCATAAAACCCTAGGCCTCGCGTGACCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CCA 72 bp | CGAGCCCCGGTCCTCTTGGCAAGCTCCTTACGATCTTaGAAGTGGGGCTTGGCATTCTGTGGGCAAGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: RAPVLLASSLRS*KWGLAFCGQAA Trigger: TGCAGCTTGCCCACAGAATGCCAAGCCCCACTTCCAAGATCGTAAGGAGCTTGCCAAGAGGACCGGGGCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CCA 72 bp | CCGGTCCTCTTGGCAAGCTCCTTACGATCTTGGAAGTaGGGCTTGGCATTCTGTGGGCAAGCTGCACTGCTA | + |
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Preference number: 3 (lower is better) Translates to: PVLLASSLRSWK*GLAFCGQAALL Trigger: TAGCAGTGCAGCTTGCCCACAGAATGCCAAGCCCCACTTCCAAGATCGTAAGGAGCTTGCCAAGAGGACCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR GCA 72 bp | TGTCAGCATACACCACTGCCTGCATACCTGCAAGTCTaGACCAAAAGGTCCCTAGGCAGCTGCAACCCTCAG | + |
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Preference number: 3 (lower is better) Translates to: CQHTPLPAYLQV*TKRSLGSCNPQ Trigger: CTGAGGGTTGCAGCTGCCTAGGGACCTTTTGGTGCAGACTTGCAGGTATGCAGGCAGTGGTGTATGCTGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR GCA 72 bp | TTCGGGGTGTTCGTGGCACAGGTGAAGACACTTAGCTaGACGTCTGCACACTTCTACTGTCTGGCTCACCTA | + |
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Preference number: 3 (lower is better) Translates to: FGVFVAQVKTLS*TSAHFYCLAHL Trigger: TAGGTGAGCCAGACAGTAGAAGTGTGCAGACGTGCAGCTAAGTGTCTTCACCTGTGCCACGAACACCCCGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR-3UTR CAA 90 bp | CATACACCACTGCCTGCATACCTGCAAGTCTGCACCAAAAGGTCCCTAGGCAGCAGTCATGCCATTGTGTaGATTAGAAAACACCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: HTPLPAYLQVCTKRSLGSSHAIV*IRKHQS Trigger: GGACTGGTGTTTTCTAATCAACACAATGGCATGACT...GCTGCCTAGGGACCTTTTGGTGCAGACTTGCAGGTATGCAGGCAGTGGTGTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR-3UTR CAA 90 bp | GGCTTGGCATTCTGTGGGCAAGCTGCACTGCTAGCAGAGCTCCAGTCTGAAAATAAATGCCAAGGGCTTTaGTATCAGAAATGGGCAACA | + |
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Preference number: 3 (lower is better) Translates to: GLAFCGQAALLAELQSENKCQGL*YQKWAT Trigger: TGTTGCCCATTTCTGATACAAAAGCCCTTGGCATTT...ATTTTCAGACTGGAGCTCTGCTAGCAGTGCAGCTTGCCCACAGAATGCCAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CCA 72 bp | ACTGTAGCTTATATAGCCAATGAGGCCACAGGTTCTTaGAACCTGACTATCCAGGAAGAACTACCCACCCAC | + |
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Preference number: 3 (lower is better) Translates to: TVAYIANEATGS*NLTIQEELPTH Trigger: GTGGGTGGGTAGTTCTTCCTGGATAGTCAGGTTCCAAGAACCTGTGGCCTCATTGGCTATATAAGCTACAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CAA 72 bp | ACGAGCCCCGGTCCTCTTGGCAAGCTCCTTACGATCTaGGAAGTGGGGCTTGGCATTCTGTGGGCAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TSPGPLGKLLTI*EVGLGILWASC Trigger: GCAGCTTGCCCACAGAATGCCAAGCCCCACTTCCAAGATCGTAAGGAGCTTGCCAAGAGGACCGGGGCTCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CAA 72 bp | CTCTTGGCAAGCTCCTTACGATCTTGGAAGTGGGGCTaGGCATTCTGTGGGCAAGCTGCACTGCTAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LLASSLRSWKWG*AFCGQAALLAE Trigger: CTCTGCTAGCAGTGCAGCTTGCCCACAGAATGCCAAGCCCCACTTCCAAGATCGTAAGGAGCTTGCCAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR TCA 90 bp | GGCTTGGCATTCTGTGGGCAAGCTGCACTGCTAGCAGAGCTCCAGTCTGAAAATAATCACTCATGGTGCTaGGTTTGGTCACTGACAACA | + |
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Preference number: 4 (lower is better) Translates to: GLAFCGQAALLAELQSENNHSWC*VWSLTT Trigger: TGTTGTCAGTGACCAAACTCAGCACCATGAGTGATT...ATTTTCAGACTGGAGCTCTGCTAGCAGTGCAGCTTGCCCACAGAATGCCAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGCATCCTTAGGCCAAGGTCCTGAGGAAGAAGACCTTATATTTGTAGGAGGAAATGGAAGGCAGTaGAGTTTTCTCTGGCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: TRASLGQGPEEEDLIFVGGNGRQ*SFLWPS Trigger: GGACGGCCAGAGAAAACTGCACTGCCTTCCATTTCC...TCCTACAAATATAAGGTCTTCTTCCTCAGGACCTTGGCCTAAGGATGCTCTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGCATCCTTAGGCCAAGGTCCTGAGGAAGAAGACCTTATATTTGTAGGAGTGTGGGACACGTCATaGGGCATGCTCCATAAATTC | + |
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Preference number: 4 (lower is better) Translates to: TRASLGQGPEEEDLIFVGVWDTS*GMLHKF Trigger: GAATTTATGGAGCATGCCTCATGACGTGTCCCACAC...TCCTACAAATATAAGGTCTTCTTCCTCAGGACCTTGGCCTAAGGATGCTCTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR CCA 90 bp | TTTAATGTAACCAGAGCATCCTTAGGCCAAGGTCCTGAGGAAGAAGACCTTATATCAGGGGCTTGGAAATaGAAGGCAGTGCAGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FNVTRASLGQGPEEEDLISGAWK*KAVQFS Trigger: AGAAAACTGCACTGCCTTCCATTTCCAAGCCCCTGA...TATAAGGTCTTCTTCCTCAGGACCTTGGCCTAAGGATGCTCTGGTTACATTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| 3UTR CAA 72 bp | ACGCGAGGCCTAGGGTTTTATGAAGTCTGGGGCTCCTaGTCTAGTATTACACCTAATAATGACTACCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: TRGLGFYEVWGS*SSITPNNDYLE Trigger: TTCAAGGTAGTCATTATTAGGTGTAATACTAGACAAGGAGCCCCAGACTTCATAAAACCCTAGGCCTCGCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGCATCCTTAGGCCAAGGTCCTGAGGAAGAAGACCTTATATTTGTAGGAGAGTCTTTGGTCTGCTaGTTACGAATGACTATCAAA | + |
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Preference number: 4 (lower is better) Translates to: TRASLGQGPEEEDLIFVGESLVC*LRMTIK Trigger: TTTGATAGTCATTCGTAATCAGCAGACCAAAGACTC...TCCTACAAATATAAGGTCTTCTTCCTCAGGACCTTGGCCTAAGGATGCTCTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGCATCCTTAGGCCAAGGTCCTGAGGAAGAAGACCTTATATTTGTAGGAACACGTCATGAGGCATaGTCCATAAATTCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: TRASLGQGPEEEDLIFVGTRHEA*SINSSH Trigger: ATGAGAAGAATTTATGGAGCATGCCTCATGACGTGT...TCCTACAAATATAAGGTCTTCTTCCTCAGGACCTTGGCCTAAGGATGCTCTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR CCA 90 bp | AGTAGAGGCCAAACACTCCAGTTTACAGATGCTATTCTTCATAAAAATGCCAAGTTCTTGGGGTACATTTaGCTAGCAATCTTAAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SRGQTLQFTDAILHKNAKFLGYI*LAILKK Trigger: CTTCTTTAAGATTGCTAGCCAAATGTACCCCAAGAA...CTTGGCATTTTTATGAAGAATAGCATCTGTAAACTGGAGTGTTTGGCCTCTACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 90 bp | CCCTCTCCAGAGTCGCTCCAAAGGAGGAATACGGATTGTTACCACTaGCCAGCGGCTCCTTCTCGGGCCGCGCGGGCTCCTCCAGGCACC | + |
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Preference number: 5 (lower is better) Translates to: PSPESLQRRNTDCYH*PAAPSRAARAPPGT Trigger: GGTGCCTGGAGGAGCCCGCGCGGCCCGAGAAGGAGCCGCTGGTCAGTGGTAACAATCCGTATTCCTCCTTTGGAGCGACTCTGGAGAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS GCA 90 bp | AGATCCTATCGTCATCCGCCTCTGTGTGGGACACGTCATGAGGCATaGTCCATAAATTCTTCTCATCATCCCTCTCCAGAGTCGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: RSYRHPPLCGTRHEA*SINSSHHPSPESLQ Trigger: TTGGAGCGACTCTGGAGAGGGATGATGAGAAGAATTTATGGAGCATGCCTCATGACGTGTCCCACACAGAGGCGGATGACGATAGGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 90 bp | ATGGTGCTGAGTTTGGTCACTGACAACAGAGAGTCGGCTTCCCTTTaGAAGCCCAAGTCCTCTAAGATTCGTCTCCATCGGTTCCTCACT | + |
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Preference number: 5 (lower is better) Translates to: MVLSLVTDNRESASL*KPKSSKIRLHRFLT Trigger: AGTGAGGAACCGATGGAGACGAATCTTAGAGGACTTGGGCTTTCAAAGGGAAGCCGACTCTCTGTTGTCAGTGACCAAACTCAGCACCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS-3UTR CAA 90 bp | ACCAGAGCATCCTTAGGCCAAGGTCCTGAGGAAGAAGACCTTATATTTGTAGGATTTCTTGGGGTACATTaGGCTAGCAATCTTAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: TRASLGQGPEEEDLIFVGFLGVH*ASNLKE Trigger: TTCTTTAAGATTGCTAGCCAAATGTACCCCAAGAAA...TCCTACAAATATAAGGTCTTCTTCCTCAGGACCTTGGCCTAAGGATGCTCTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 72 bp | GAGTCGCTCCAAAGGAGGAATACGGATTGTTACCACTaGCCAGCGGCTCCTTCTCGGGCCGCGCGGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ESLQRRNTDCYH*PAAPSRAARAP Trigger: AGGAGCCCGCGCGGCCCGAGAAGGAGCCGCTGGTCAGTGGTAACAATCCGTATTCCTCCTTTGGAGCGACTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS CAA 72 bp | TCCCTCTCCAGAGTCGCTCCAAAGGAGGAATACGGATaGTTACCACTGACCAGCGGCTCCTTCTCGGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: SLSRVAPKEEYG*LPLTSGSFSGR Trigger: GCGGCCCGAGAAGGAGCCGCTGGTCAGTGGTAACAATCCGTATTCCTCCTTTGGAGCGACTCTGGAGAGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS CAA 72 bp | CTCTGGCCGTCCACCAGGCATGGGACCCCAGGTTTCTaGGGGTACATTTGGCTAGCAATCTTAAAGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: LWPSTRHGTPGF*GYIWLAILKKS Trigger: GGACTTCTTTAAGATTGCTAGCCAAATGTACCCCAAGAAACCTGGGGTCCCATGCCTGGTGGACGGCCAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 72 bp | CCCTGCGGATCTGCCGCAGGGTGTAGATATCATAGTTaGGTCTTTGCCATTCCTCTGAGTCTTTGGTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PCGSAAGCRYHS*VFAIPLSLWSA Trigger: AGCAGACCAAAGACTCAGAGGAATGGCAAAGACTCAACTATGATATCTACACCCTGCGGCAGATCCGCAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS CCA 72 bp | ACCAGGCATGGGACCCCAGGTTTCTTGGGGTACATTTaGCTAGCAATCTTAAAGAAGTCCTCAGCAGCATCG | + |
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Preference number: 6 (lower is better) Translates to: TRHGTPGFLGYI*LAILKKSSAAS Trigger: CGATGCTGCTGAGGACTTCTTTAAGATTGCTAGCCAAATGTACCCCAAGAAACCTGGGGTCCCATGCCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS CAA 72 bp | CACCAGGCATGGGACCCCAGGTTTCTTGGGGTACATTaGGCTAGCAATCTTAAAGAAGTCCTCAGCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: HQAWDPRFLGVH*ASNLKEVLSSI Trigger: GATGCTGCTGAGGACTTCTTTAAGATTGCTAGCCAAATGTACCCCAAGAAACCTGGGGTCCCATGCCTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 72 bp | AGTTTGGTCACTGACAACAGAGAGTCGGCTTCCCTTTaGAAGCCCAAGTCCTCTAAGATTCGTCTCCATCGG | + |
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Preference number: 6 (lower is better) Translates to: SLVTDNRESASL*KPKSSKIRLHR Trigger: CCGATGGAGACGAATCTTAGAGGACTTGGGCTTTCAAAGGGAAGCCGACTCTCTGTTGTCAGTGACCAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 72 bp | GTTTTTAGAATCACTCATGGTGCTGAGTTTGGTCACTaGCAACAGAGAGTCGGCTTCCCTTTGAAAGCCCAA | + |
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Preference number: 6 (lower is better) Translates to: VFRITHGAEFGH*QQRVGFPLKAQ Trigger: TTGGGCTTTCAAAGGGAAGCCGACTCTCTGTTGTCAGTGACCAAACTCAGCACCATGAGTGATTCTAAAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 72 bp | GCCATTCCTCTGAGTCTTTGGTCTGCTGATTACGAATaGCTATCAAATTATACAAGATCCTATCGTCATCCG | + |
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Preference number: 6 (lower is better) Translates to: AIPLSLWSADYE*LSNYTRSYRHP Trigger: CGGATGACGATAGGATCTTGTATAATTTGATAGTCATTCGTAATCAGCAGACCAAAGACTCAGAGGAATGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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| CDS TCA 72 bp | TTGAGTCTTTGCCATTCCTCTGAGTCTTTGGTCTGCTaGTTACGAATGACTATCAAATTATACAAGATCCTA | + |
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Preference number: 6 (lower is better) Translates to: LSLCHSSESLVC*LRMTIKLYKIL Trigger: TAGGATCTTGTATAATTTGATAGTCATTCGTAATCAGCAGACCAAAGACTCAGAGGAATGGCAAAGACTCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048860.9 |
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