RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MRC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020695

Ensembl transcript IDs: ENSMUST00000021038.5, ENSMUST00000100335.10

Found 374 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTCCCTCCTGCCATACCCTAGGTCCATTCCAGCAGGCACAGGAGTaGCAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGA +
Preference number: 1 (lower is better)
Translates to: APSCHTLGPFQQAQE*QMLGQPLQLTPTQR
Trigger: TCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGTGCCTGCTGGAATGGACCTAGGGTATGGCAGGAGGGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR GCA 90 bp CATGGCAAGCTATGCCCCCGGCACCCAGTAGCAACTCCCAAGGGTTaGCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTG +
Preference number: 1 (lower is better)
Translates to: HGKLCPRHPVATPKG*HPKTTGLMGDGGLL
Trigger: CAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTTGCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 90 bp AAGTCTCAGCCTAGCCTCTATGGTAGGCTGGGTACTCCCACCCCATaGCAAGCTATGCCCCCGGCACCCAGTAGCAACTCCCAAGGGTTG +
Preference number: 1 (lower is better)
Translates to: KSQPSLYGRLGTPTP*QAMPPAPSSNSQGL
Trigger: CAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 90 bp GGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCCTCTaGAAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCA +
Preference number: 1 (lower is better)
Translates to: GTRGLALSILAGTLL*KKVLSGSMSWSPRP
Trigger: TGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTTCCAGAGGAGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 90 bp CCATACCCTAGGTCCATTCCAGCAGGCACAGGAGTGACAGATGCTTaGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGAAAGAGAGAG +
Preference number: 1 (lower is better)
Translates to: PYPRSIPAGTGVTDA*PASSADPHPERKRE
Trigger: CTCTCTCTTTCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGTGCCTGCTGGAATGGACCTAGGGTATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 90 bp GCTGGGACTCTCCTCTGGAAAAAGGTGCTGAGTGGTTCCATGAGTTaGTCTCCTAGGCCACACCAGATGGTAGCACCTGGTGCTGTCCCA +
Preference number: 1 (lower is better)
Translates to: AGTLLWKKVLSGSMS*SPRPHQMVAPGAVP
Trigger: TGGGACAGCACCAGGTGCTACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTTCCAGAGGAGAGTCCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 90 bp AGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGTaGATAAGGTGTCTCTCCGAAGTTCCATCTCTACTCCAGCAGACA +
Preference number: 1 (lower is better)
Translates to: RTEPSPDQQEMTPCE*IRCLSEVPSLLQQT
Trigger: TGTCTGCTGGAGTAGAGATGGAACTTCGGAGAGACACCTTATCCACTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR CCA 90 bp TGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGGGGGGCCTGCTGACCTaGGGCCCCTGCCTTACCCGC +
Preference number: 2 (lower is better)
Translates to: CRSAGLGSGIWGGKDMNKGGLLT*GPCLTR
Trigger: GCGGGTAAGGCAGGGGCCCCAGGTCAGCAGGCCCCC...CTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR TCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGGCCAGCCTCTTCAGCTaGCCCCCACCCAGAGAGAAA +
Preference number: 2 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCEASLFS*PPPREK
Trigger: TTTCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGC...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR TCA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGAACTGGGCTGATGGGTaGTGGGGGCCTGCTGACCTG +
Preference number: 2 (lower is better)
Translates to: KPEPEAGDIRELILVPTGNWADG*WGPADL
Trigger: CAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTT...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR CCA 90 bp CCTAGGCTGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGCCTCTATGGTAGGCTaGGTACTCCCACCCCATGGC +
Preference number: 2 (lower is better)
Translates to: PRLQVSRFRLRDLGRKRHASMVG*VLPPHG
Trigger: GCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC...ATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCAGCCTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR TCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTACAAAGACAACTGGGCTaGTGGGTGATGGGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVQRQLG*WVMGAC
Trigger: GCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTG...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR TCA 90 bp ACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCCTAGGGGGGAGGAAAAGACATaGATAAGCTCATGTCCCTTC +
Preference number: 2 (lower is better)
Translates to: TPRDGAGFPGLQIGKNPRGEEKT*ISSCPF
Trigger: GAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCC...CCTAGGATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR GCA 90 bp TGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGGCAACTCCCAAGGGTTaGCATCCAAAGACAACTGGG +
Preference number: 2 (lower is better)
Translates to: CRSAGLGSGIWGGKDMNKATPKG*HPKTTG
Trigger: CCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGC...CTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR CAA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGACCTGCCTCCCCCGCTTaGGCTCCACCCCGACCACGC +
Preference number: 3 (lower is better)
Translates to: TGVTDAWPASSADPHPERPASPA*APPRPR
Trigger: GCGTGGTCGGGGTGGAGCCAAAGCGGGGGAGGCAGG...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR GCA 72 bp ATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATaGCCCCGGCACCCAGTAGCAACTCCCAAGGGTTGC +
Preference number: 3 (lower is better)
Translates to: MVGWVLPPHGKL*PRHPVATPKGC
Trigger: GCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 72 bp CCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCTaGGTACTCCCACCCCATGGCAAGCTATGCCCCCGG +
Preference number: 3 (lower is better)
Translates to: PLPSLSLASMVG*VLPPHGKLCPR
Trigger: CCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR GCA 72 bp CTATGCCCCCGGCACCCAGTAGCAACTCCCAAGGGTTaGCATCCAAAGACAACTGGGCTGATGGGTGATGGG +
Preference number: 3 (lower is better)
Translates to: LCPRHPVATPKG*HPKTTGLMGDG
Trigger: CCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 72 bp CACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTaGGACTCTCCTCTGGAAAAAGGTGCTGAGTGGTTC +
Preference number: 3 (lower is better)
Translates to: HWDTGTGTLHPG*DSPLEKGAEWF
Trigger: GAACCACTCAGCACCTTTTTCCAGAGGAGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR CAA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGATCATATTGCCTCCAGTaGCCATGGGGTCCAGGTCCA +
Preference number: 3 (lower is better)
Translates to: TGVTDAWPASSADPHPERSYCLQ*PWGPGP
Trigger: TGGACCTGGACCCCATGGCAACTGGAGGCAATATGA...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 72 bp TTTTGTTCACATCGTCCTGCACTGGGACACGGGGACTaGCACTCTCCATCCTGGCTGGGACTCTCCTCTGGA +
Preference number: 3 (lower is better)
Translates to: FCSHRPALGHGD*HSPSWLGLSSG
Trigger: TCCAGAGGAGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR TCA 72 bp CACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTaGCCCCCACCCAGAGAGAAAGAGAGAGAGAATGAG +
Preference number: 3 (lower is better)
Translates to: HRSDRCLASLFS*PPPREKERENE
Trigger: CTCATTCTCTCTCTCTTTCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 72 bp CCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGTaGATAAGGTGTCTCTCCGAAGTTCCATCTCTACTC +
Preference number: 3 (lower is better)
Translates to: PSPDQQEMTPCE*IRCLSEVPSLL
Trigger: GAGTAGAGATGGAACTTCGGAGAGACACCTTATCCACTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 72 bp CTCCTCTGGAAAAAGGTGCTGAGTGGTTCCATGAGTTaGTCTCCTAGGCCACACCAGATGGTAGCACCTGGT +
Preference number: 3 (lower is better)
Translates to: LLWKKVLSGSMS*SPRPHQMVAPG
Trigger: ACCAGGTGCTACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTTCCAGAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CCA 72 bp CTAGGCTGCAGGTCAGCAGGTTTAGGCTCAGGGATCTaGGGAGGAAAAGACATGAATAAGCTCATGTCCCTT +
Preference number: 3 (lower is better)
Translates to: LGCRSAGLGSGI*GGKDMNKLMSL
Trigger: AAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCAGCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR-3UTR CAA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCAGCAACTCCCAAGGGTaGCCATCCAAAGACAACTGG +
Preference number: 3 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLSNSQG*PSKDNW
Trigger: CCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCT...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCCAGTACGCAGCGCAGCAGGTaGCGAGGCCAGGGCGCGAGG +
Preference number: 4 (lower is better)
Translates to: YGRLGTPTPWQAMPPAPSTQRSR*RGQGAR
Trigger: CCTCGCGCCCTGGCCTCGTCACCTGCTGCGCTGCGT...ACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACGCTGGGCGTGGGGTCTaGCCCAGGCAGCTCTGGTGT +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHAGRGV*PRQLWC
Trigger: ACACCAGAGCTGCCTGGGCCAGACCCCACGCCCAGC...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp GAGGTGACAGAGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGGGTGCCAGTGGGTaGAGCTCACGAGGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: EVTESHPKGRGRLSRPTDRGASG*SSRGSR
Trigger: ACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCT...ATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCAGGCAGCTCTGGTGTaGCCGGTGTGCCCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSQAALV*PVCPGS
Trigger: AGAGCCTGGGCACACCGGTCACACCAGAGCTGCCTG...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCCATCCCAGCGGCCAGTaGAGTGGGCTGAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGHPSGQ*SGLRGC
Trigger: ACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATG...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACGGTGCAGATGCGCTGTaGCTGCGCCCACGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDGADAL*LRPRGV
Trigger: CACTCCTCGTGGGCGCAGGCACAGCGCATCTGCACC...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACGGGATCGGGCACGTGTaGCAGGCTGGCATTTCGGCT +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHGIGHV*QAGISA
Trigger: AGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCC...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTCCTCCGCAGCGCCCTaGCTCAGCCGGCCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGSSAAP*LSRPAF
Trigger: GAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGGA...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCCCTTCCGGCAGCCGTaGTCCTCCTCCGCAGCGCCC +
Preference number: 4 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNPFRQP*SSSAAP
Trigger: GGGCGCTGCGGAGGAGGACCACGGCTGCCGGAAGGG...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCCTCCCACAGTCCCATaGCACTGCCAGTGGCCAGAG +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHPPTVP*HCQWPE
Trigger: CTCTGGCCACTGGCAGTGCCATGGGACTGTGGGAGG...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGGTTCTGCCAGCCGCCTaGGGACTCAGTCCGGATCAC +
Preference number: 4 (lower is better)
Translates to: FTSSCTGTRGLALSILAGVLPAA*GLSPDH
Trigger: GTGATCCGGACTGAGTCCTCAGGCGGCTGGCAGAAC...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCTCGGAGTTTGGGGTCTaGGACCCAGCCCTGGGGACA +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGSEFGV*DPALGT
Trigger: TGTCCCCAGGGCTGGGTCTCAGACCCCAAACTCCGA...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCCTCCAGCGCCAGCTGTaGCCCTCTCTAGGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGLQRQL*PSLGSL
Trigger: CAGAGACCCTAGAGAGGGTCACAGCTGGCGCTGGAG...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCCAGTAGCAAGTCTGCACCCTaGTGCTCGCAGCTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: YGRLGTPTPWQAMPPAPSSKSAP*CSQLAQ
Trigger: CTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTTGCT...ACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCTGGCCCTGGAAGGGCTaGCAGCTGGGGTCACATTCC +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGWPWKG*QLGSHS
Trigger: GGAATGTGACCCCAGCTGGCAGCCCTTCCAGGGCCA...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACGCCACAGTCCGCTGCTaGTCTGGATCCAGTAGCAGC +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHATVRC*SGSSSS
Trigger: GCTGCTACTGGATCCAGAGCAGCAGCGGACTGTGGC...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp CATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCCGTAGTCCTGGGTGGTaGCACACCACAGGTGCCCAT +
Preference number: 4 (lower is better)
Translates to: HRPALGHGDWHSPSWLGLRSPGW*HTTGAH
Trigger: ATGGGCACCTGTGGTGTGCCACCACCCAGGACTACG...GAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACGCAGACACGCCCTCTTaGACTCCTGCCAGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDADTPS*TPASCA
Trigger: AGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGC...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCCATGGCACTGCCAGTaGCCAGAGCCACACAGCCTC +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSPWHCQ*PEPHSL
Trigger: GAGGCTGTGTGGCTCTGGCCACTGGCAGTGCCATGG...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTGCGTCTGGCACTGCATaGGTACCCACTGCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSASGTA*VPTAGR
Trigger: CCTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGC...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACTGTTCCAATGGCCACTaGGGGTCTGGTCACCGCGCT +
Preference number: 4 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDCSNGH*GSGHRA
Trigger: AGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACA...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCCTCTGCCAGTGCTGGTaGAGCCGTGGAACCACTGGT +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGLCQCW*SRGTTG
Trigger: ACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAG...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCCCCAGCGCTCATCTTTaGCGTAGTCCTGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGPSAHL*RSPGWW
Trigger: CCACCACCCAGGACTACGGCAAAGATGAGCGCTGGG...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTAGGGCAGGGCGATGCTaGAGTCATGGTTCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSRAGRC*SHGSAS
Trigger: GCTGGCAGAACCATGACTGCAGCATCGCCCTGCCCT...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGACTCCTGCCAGCTaGGCTTCTCGGCCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGWTPAS*ASRPAG
Trigger: GCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCA...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGGCACTGGGTGGATGCATGGGTACCCACTaGAGGGAGGCCAGGTCCAGC +
Preference number: 4 (lower is better)
Translates to: ERDHPSPRAMAQKEALGGCMGTH*REARSS
Trigger: GCTGGACCTGGCCTCCCTGCAGTGGGTACCCATGCA...TCCACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCGGAACCAGGTGCAGATaGGCTGTGCCTGCGCCCACG +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGGTRCR*AVPAPT
Trigger: CGTGGGCGCAGGCACAGCGCATCTGCACCTGGTTCC...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCGCTCCTCCTCATAGCTaGCCAGACTCAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGAPPHS*PDSAAG
Trigger: CCCAGCTGCTGAGTCTGGCCAGCTATGAGGAGGAGC...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCATTTCACCCTGTCCTaGGGGTCCTGGCCCTGGATT +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHHFTLS*GSWPWI
Trigger: AATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATG...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GAGGTGACAGAGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATTGCAGCGCCTCCTTGTaGCCCAACAGCACCTCCATG +
Preference number: 4 (lower is better)
Translates to: EVTESHPKGRGRLSRPTDCSASL*PNSTSM
Trigger: CATGGAGGTGCTGTTGGGCCACAAGGAGGCGCTGCA...ATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGCCGGCCCCCAGATGGTaGCACAGTCCTCCAGGCTGT +
Preference number: 4 (lower is better)
Translates to: ERERERDHPSPRAMAQKEPAPRW*HSPPGC
Trigger: ACAGCCTGGAGGACTGTGTCACCATCTGGGGGCCGG...CTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTCTCTCTCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp CATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCGTGATGGTGACCAGCTaGGAGCCATGGTCAGTACAC +
Preference number: 4 (lower is better)
Translates to: HRPALGHGDWHSPSWLGLVMVTS*EPWSVH
Trigger: GTGTACTGACCATGGCTCTCAGCTGGTCACCATCAC...GAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACGCAGCCGCTCTGAGCTaGACACCTTATAGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHAAALS*TPYSSV
Trigger: GACACTGCTATAAGGTGTTCAGCTCAGAGCGGCTGC...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGACACCGCGCTCCAGGGTaGCAGGCTTGGATGCATTGC +
Preference number: 4 (lower is better)
Translates to: TGVTDAWPASSADPHPERHRAPG*QAWMHC
Trigger: GCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTG...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGAAGTCTGCACCCTGCTaGTCGCAGCTGGCCCAGGCC +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCEKSAPC*SQLAQA
Trigger: GGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTT...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCCTAGGAGCTGGTCGGCTTGGTaGCACTGGGAGCAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: TPRDGAGFPGLQIGKNPRSWSAW*HWEQGW
Trigger: CCAGCCCTGCTCCCAGTGGCACCAAGCCGACCAGCT...CCTAGGATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp CCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCTGGGTACTCCCACCCCATTGGGCTGAGGGGCTGTaGAGGATCACCGCACAGCTG +
Preference number: 4 (lower is better)
Translates to: PLPSLSLASMVGWVLPPHWAEGL*RITAQL
Trigger: CAGCTGTGCGGTGATCCTGCACAGCCCCTCAGCCCA...ATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp CCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACAACTGGGCTGTGTTTGCAGCCCCCGTaGAGCCTGTGTGAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: PRHPVATPKGCHPKTTGLCLQPP*SLCEEG
Trigger: GCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACA...CAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCGCACAGCCTCCCGAGTaGTGGGGCTCCTCATCTTGC +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGAQPPE*WGSSSC
Trigger: GCAAGATGAGGAGCCCCAGCACTCGGGAGGCTGTGC...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGCCGTAGTCCTGGGTaGTGGCACACCACAGGTGCC +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGCRSPG*WHTTGA
Trigger: GGCACCTGTGGTGTGCCACCACCCAGGACTACGGCA...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGCAGCCAGTAGCAGGATaGGCTATGCCACGTCCAACC +
Preference number: 4 (lower is better)
Translates to: FTSSCTGTRGLALSILAGQPVAG*AMPRPT
Trigger: GGTTGGACGTGGCATAGCCCATCCTGCTACTGGCTG...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGAAACTGTGGTGTTGGTaGCTGGCCAGCCTGTACCCA +
Preference number: 4 (lower is better)
Translates to: FTSSCTGTRGLALSILAGKLWCW*LASLYP
Trigger: TGGGTACAGGCTGGCCAGTCACCAACACCACAGTTT...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp CCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACAACTGGGCTGCACAGTCGTTACTCTTaGTGGGGCAGAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: PRHPVATPKGCHPKTTGLHSRYS*WGRSPS
Trigger: GCTGGGGCTTCTGCCCCATCAAGAGTAACGACTGTG...CAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCAACCATCTGTCCACCTaGAGCGTCCGTCACTCTCCA +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGNHLST*SVRHSP
Trigger: TGGAGAGTGACGGACGCTTCAGGTGGACAGATGGTT...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTGGAGAACTGTGCCTCTaGCCATTTCACCCTGTCCTG +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSGELCL*PFHPVL
Trigger: CAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCC...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp GAGAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGGCACTGGGTGTGCCCTTCTGGCAGATaGAGCCATGCGTCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: EREITQVPGPWLRRRHWVCPSGR*SHASPL
Trigger: CAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCA...CACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACATTCAGAGGCTCCTCTaGGAGCCAGGAATACCTCCG +
Preference number: 4 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDIQRLL*EPGIPP
Trigger: CGGAGGTATTCCTGGCTCTCAGAGGAGCCTCTGAAT...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTGCCGGCCTGCCTTCTTaGAAATGGATGGCAAGGACT +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSAGLPS*KWMART
Trigger: AGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGC...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGCAGATCCAGTCAAGCTaGGTCTGGCACTGCATGGGT +
Preference number: 4 (lower is better)
Translates to: FTSSCTGTRGLALSILAGQIQSS*VWHCMG
Trigger: ACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTG...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GGGAAAGGGGAACATGACCCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCCAGCGCAGTGGCTTCTaGAGCAGCCGGAAGGTGTGG +
Preference number: 4 (lower is better)
Translates to: GKGEHDPLPSLSLASMVGQRSGF*SSRKVW
Trigger: CCACACCTTCCGGCTGCTGCAGAAGCCACTGCGCTG...GCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGGGTCATGTTCCCCTTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCGCTCACCCCACACACTaGCCCCTGCAGCTTGGTATC +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGAHPTH*PLQLGI
Trigger: GATACCAAGCTGCAGGGGGCAGTGTGTGGGGTGAGC...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp CCTAGGCTGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATCTTCTCGGTGGCCTCTaGGGGGCCAGAGTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PRLQVSRFRLRDLGRKRHLLGGL*GARVAA
Trigger: AGCAGCCACTCTGGCCCCGCAGAGGCCACCGAGAAG...ATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCAGCCTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGCAGCCCTGCATCCCCTaGCTGAAGATGAGGAAGACA +
Preference number: 4 (lower is better)
Translates to: FTSSCTGTRGLALSILAGQPCIP*LKMRKT
Trigger: TGTCTTCCTCATCTTCAGCCAGGGGATGCAGGGCTG...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGGCACTGGGTGGACAGTCAAGCTGCGTCTaGCACTGCATGGGTACCCAC +
Preference number: 4 (lower is better)
Translates to: ERDHPSPRAMAQKEALGGQSSCV*HCMGTH
Trigger: GTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTG...TCCACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp CCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACAACTGGGCTGGCACGTGTGCCAGGCTaGCATTTCGGCTCTCACACA +
Preference number: 4 (lower is better)
Translates to: PRHPVATPKGCHPKTTGLARVPG*HFGSHT
Trigger: TGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGC...CAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GAGGTGACAGAGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATTGGTATCACAGCTGGTaGTGCGCCAGGTTCCATCCA +
Preference number: 4 (lower is better)
Translates to: EVTESHPKGRGRLSRPTDWYHSW*CARFHP
Trigger: TGGATGGAACCTGGCGCACCACCAGCTGTGATACCA...ATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGGCTTGGTATCACAGCTaGTGGTGCGCCAGGTTCCAT +
Preference number: 4 (lower is better)
Translates to: FTSSCTGTRGLALSILAGAWYHS*WCARFH
Trigger: ATGGAACCTGGCGCACCACCAGCTGTGATACCAAGC...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGCTCGGGGAGGGCTGCTaGTGGCAAGAAGCTGTTCTC +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCELGEGC*WQEAVL
Trigger: GAGAACAGCTTCTTGCCATCAGCAGCCCTCCCCGAG...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCGTGGCACACCACAGGTaGCCATCTTCTCTGCCAGTG +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGVAHHR*PSSLPV
Trigger: CACTGGCAGAGAAGATGGGCACCTGTGGTGTGCCAC...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCAACTCTTCTTCTCCTaGAGCCGCTCTGAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSQLFFS*SRSELN
Trigger: GTTCAGCTCAGAGCGGCTGCAGGAGAAGAAGAGTTG...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCCAGTAACGGAGGTCAGATCTaGCTGGAACCAGGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: YGRLGTPTPWQAMPPAPSNGGQI*LEPGAD
Trigger: ATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTT...ACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGAGGCCGATCCACCAGTaGTGCTCCTGGTCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: ERERERDHPSPRAMAQKERPIHQ*CSWSED
Trigger: GTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCT...CTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTCTCTCTCTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GAGGTGACAGAGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGCCCTGAGGACAGCTaGCACGGTAGTTTATCCTTC +
Preference number: 4 (lower is better)
Translates to: EVTESHPKGRGRLSRPTDSPEDS*HGSLSF
Trigger: GAAGGATAAACTACCGTGGCAGCTGTCCTCAGGGCT...ATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACCAGCCGTGGAACCACTaGTTGTCGTATTTGAAGGGG +
Preference number: 4 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDQPWNH*LSYLKG
Trigger: CCCCTTCAAATACGACAACCAGTGGTTCCACGGCTG...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGATCAAAGGGGTGCCAGTaGGTGAAGCTCACGAGGCTC +
Preference number: 4 (lower is better)
Translates to: TGVTDAWPASSADPHPERSKGCQ*VKLTRL
Trigger: GAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGA...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCAACCAGTGCTGCTCATaGCTCTCAGGCTCTGACTCA +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGNQCCS*LSGSDS
Trigger: TGAGTCAGAGCCTGAGAGCCATGAGCAGCACTGGTT...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGCTGCCCCCTGCAGCTTaGTATCACAGCTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCELPPAA*YHSWWC
Trigger: GCACCACCAGCTGTGATACCAAGCTGCAGGGGGCAG...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCCTCCTGCAGCCGCTCTaGGCTGAACACCTTATAGCA +
Preference number: 4 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGLLQPL*AEHLIA
Trigger: TGCTATAAGGTGTTCAGCTCAGAGCGGCTGCAGGAG...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp ACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCCTAGGGTGCTGCTCCTGGTCTaGGGACAGCTTCTGCAGGTT +
Preference number: 4 (lower is better)
Translates to: TPRDGAGFPGLQIGKNPRVLLLV*GQLLQV
Trigger: AACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCAC...CCTAGGATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp AAGCTATGCCCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACACACTGGAAGTCCCTCTaGGAGGCATGCAGGCCAATC +
Preference number: 4 (lower is better)
Translates to: KLCPRHPVATPKGCHPKTHWKSL*EACRPI
Trigger: GATTGGCCTGCATGCCTCTCAGAGGGACTTCCAGTG...TGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp CCTAGGCTGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGGTGCCAGGCTTGGATaGATTGCTTGCACGAGCCCC +
Preference number: 4 (lower is better)
Translates to: PRLQVSRFRLRDLGRKRHGARLG*IACTSP
Trigger: GGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACC...ATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCAGCCTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCCGTTGGGTTTCTTCTTaGAAACATAGGGCAGGGCGA +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGRWVSS*KHRAGR
Trigger: TCGCCCTGCCCTATGTTTGCAAGAAGAAACCCAACG...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATTTGGGCTCAAAGGGGTaGCAGTGGGTGAAGCTCACG +
Preference number: 4 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNLGSKG*QWVKLT
Trigger: CGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAA...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCTGGCTCAGCCGGCCTaGCTTCTTGCAAATGGATGG +
Preference number: 4 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNLAQPA*LLANGW
Trigger: CCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAG...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GGGAAAGGGGAACATGACCCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCGGCCAGGTCCAGCACTaGACAGCCTCGGATATCATC +
Preference number: 4 (lower is better)
Translates to: GKGEHDPLPSLSLASMVGGQVQH*TASDII
Trigger: GATGATATCCGAGGCTGTGCAGTGCTGGACCTGGCC...GCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGGGTCATGTTCCCCTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AAGCTATGCCCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACACCACACACTGCCCCCTaGAGCTTGGTATCACAGCTG +
Preference number: 4 (lower is better)
Translates to: KLCPRHPVATPKGCHPKTPHTAP*SLVSQL
Trigger: CAGCTGTGATACCAAGCTGCAGGGGGCAGTGTGTGG...TGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGGTAGAGGATGAGGGCTaGCGTCATCAAGGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCEVEDEG*RHQGQE
Trigger: CTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTAC...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGGCACTGGGTGGAACAGTTCTCCTCACCTaGGTTGTCCGGCTGATCACT +
Preference number: 4 (lower is better)
Translates to: ERDHPSPRAMAQKEALGGTVLLT*VVRLIT
Trigger: AGTGATCAGCCGGACAACCCAGGTGAGGAGAACTGT...TCCACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GAGGTGACAGAGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATTGTCACGAAAGTTGTTaGGCTCAAAGGGGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: EVTESHPKGRGRLSRPTDCHESC*AQRGAS
Trigger: ACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACA...ATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCTTCTTGCAAATGGATaGCAAGGACTGGTTACAGGG +
Preference number: 4 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHLLANG*QGLVTG
Trigger: CCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAG...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCCAGTCCATCTCATCAAGAATaGACAGAACCGTCCCACCAG +
Preference number: 4 (lower is better)
Translates to: YGRLGTPTPWQAMPPAPSPSHQE*TEPSHQ
Trigger: CTGGTGGGACGGTTCTGTCCATTCTTGATGAGATGG...ACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp GGGAAAGGGGAACATGACCCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCGCACGGCTTTCCGTGTaGGTTTCCCTGGATGGTGTA +
Preference number: 4 (lower is better)
Translates to: GKGEHDPLPSLSLASMVGARLSV*VSLDGV
Trigger: TACACCATCCAGGGAAACTCACACGGAAAGCCGTGC...GCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGGGTCATGTTCCCCTTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGGGTCACATTCCACCTTaGCATTGGTCCACCGGTCTG +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCEGHIPP*HWSTGL
Trigger: CAGACCGGTGGACCAATGTCAAGGTGGAATGTGACC...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCGTACTGTTGAGGTCTTaGAGGGCTGTCCAGAAGTAT +
Preference number: 4 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGVLLRS*RAVQKY
Trigger: ATACTTCTGGACAGCCCTGCAAGACCTCAACAGTAC...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGACAGGAAGTCCAGTTCTaGTTGGCTGTGAACGGAGGT +
Preference number: 4 (lower is better)
Translates to: TGVTDAWPASSADPHPERQEVQF*LAVNGG
Trigger: ACCTCCGTTCACAGCCAAGCAGAACTGGACTTCCTG...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp CCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCTGGGTACTCCCACCCCATTATCACAGCTGGTGGTaGGCCAGGTTCCATCCACAT +
Preference number: 4 (lower is better)
Translates to: PLPSLSLASMVGWVLPPHYHSWW*ARFHPH
Trigger: ATGTGGATGGAACCTGGCGCACCACCAGCTGTGATA...ATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATTGGGCTTCAGCTGTCTaGAGGTGCTCCCAGACAAAC +
Preference number: 4 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNWASAV*RCSQTN
Trigger: GTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCA...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGACAGCTGTGTTGTCTTaGCAGACCAGCGTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCETAVLS*QTSVPP
Trigger: AGGAGGCACGCTGGTCTGGCAAGACAACACAGCTGT...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCTGGCCACTGCGGGTCTaGTCACCGCGCTCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLWPLRV*SPRSRV
Trigger: CACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCA...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGGCGATGCTGCAGTCATaGTTCTGCCAGCCGCCTGAG +
Preference number: 4 (lower is better)
Translates to: KPEPEAGDIRELILVPTGAMLQS*FCQPPE
Trigger: CTCAGGCGGCTGGCAGAACCATGACTGCAGCATCGC...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp CCTAGGCTGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGCCAGAGGGCTCTCCTaGTGCCCAGTTGGTATAGAG +
Preference number: 4 (lower is better)
Translates to: PRLQVSRFRLRDLGRKRHARGLS*CPVGIE
Trigger: CTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGC...ATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCAGCCTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTTGTCACACTCATACATaGCCAAGGAAACTGTGGTGT +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSCHTHT*PRKLWC
Trigger: ACACCACAGTTTCCTTGGGCATGTATGAGTGTGACA...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCCAGATGCGCTGTGCCTaGGCCCACGAGGAGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLQMRCA*AHEEWC
Trigger: GCACCACTCCTCGTGGGCGCAGGCACAGCGCATCTG...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCCTAGGTCTGAGGACAGCTTCTaGAGGTTTTGCCCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: TPRDGAGFPGLQIGKNPRSEDSF*RFCPRK
Trigger: CTTCCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGA...CCTAGGATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATAGAAGCAGGGACAACTaGTCCCCTAGTGTACGACAC +
Preference number: 4 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNRSRDN*SPSVRH
Trigger: GTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCT...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCAGCCTCCCGAGTGCTaGGGCTCCTCATCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: CRSAGLGSGIWGGKDMNKQPPEC*GSSSCQ
Trigger: CTGGCAAGATGAGGAGCCCCAGCACTCGGGAGGCTG...CTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTATAGGTCTTCTTCACTaGCATAGATGTTCCAATGGC +
Preference number: 4 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSIGLLH*HRCSNG
Trigger: GCCATTGGAACATCTATGGCAGTGAAGAAGACCTAT...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGGAGCCCGGAACGATGTaGAGTTCTTCACCTCCCACA +
Preference number: 4 (lower is better)
Translates to: KPEPEAGDIRELILVPTGEPGTM*SSSPPT
Trigger: TGTGGGAGGTGAAGAACTGCACATCGTTCCGGGCTC...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCCTGCCTGGAACCAGGTaGAGATGCGCTGTGCCTGCG +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLLPGTR*RCAVPA
Trigger: CGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAG...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTACCGATCCACCAGTGCTaGTCCTGGTCTGAGGACAGC +
Preference number: 4 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVPIHQC*SWSEDS
Trigger: GCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGG...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGACCAGCTGGGCTTCTTaGTGTTCACAGGAGAACTGT +
Preference number: 4 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCETSWAS*CSQENC
Trigger: ACAGTTCTCCTGTGAACAGCAAGAAGCCCAGCTGGT...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGTCAGCTGTCTGCAGGTaGTCCCAGACAAACACATTC +
Preference number: 4 (lower is better)
Translates to: ERERERDHPSPRAMAQKESAVCR*SQTNTF
Trigger: GAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGA...CTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTCTCTCTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTAACCCACTTCCAGCGCTaGGCAGGGAGACTGGCATTG +
Preference number: 4 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVTHFQR*AGRLAL
Trigger: CAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGT...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGACCCAGTCCTCTTGTCTaGCTGTCATGTATACACACT +
Preference number: 4 (lower is better)
Translates to: TGVTDAWPASSADPHPERPSPLV*LSCIHT
Trigger: AGTGTGTATACATGACAGCCAGACAAGAGGACTGGG...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
3UTR CAA 72 bp CCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTaGGTCCCCACAGGGGACTCTTTCAAGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: PEPEAGDIRELI*VPTGDSFKDRA
Trigger: GGCTCTGTCCTTGAAAGAGTCCCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATCCTAGGAGCTCCTCCACCTCTTaGTTGATCTGTTTGGTGATG +
Preference number: 4 (lower is better)
Translates to: TPRDGAGFPGLQIGKNPRSSSTS*LICLVM
Trigger: CATCACCAAACAGATCAAGCAAGAGGTGGAGGAGCT...CCTAGGATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTACTTCTCTGCCAGTGCTaGTGCAGCCGTGGAACCACT +
Preference number: 4 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVLLCQC*CSRGTT
Trigger: AGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAG...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AAGCTATGCCCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACACTGCCTTCTTGCAAATaGATGGCAAGGACTGGTTAC +
Preference number: 4 (lower is better)
Translates to: KLCPRHPVATPKGCHPKTLPSCK*MARTGY
Trigger: GTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAG...TGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGCTCCTGGTGCCCAGTTaGTATAGAGCAGGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: KPEPEAGDIRELILVPTGLLVPS*YRAGVL
Trigger: AAGAACCCCTGCTCTATACCAACTGGGCACCAGGAG...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTAGATACTCAGCAAGTCTaGACCCTGCTGCTCGCAGCT +
Preference number: 4 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVDTQQV*TLLLAA
Trigger: AGCTGCGAGCAGCAGGGTGCAGACTTGCTGAGTATC...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATGTGAGTTTCCCTGGATaGTGTAGACCTCATAGTAAG +
Preference number: 4 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNVSFPG*CRPHSK
Trigger: CTTACTATGAGGTCTACACCATCCAGGGAAACTCAC...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCGAGGTCAGATCTGCCTaGAACCAGGTGCAGATGCGC +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLEVRSA*NQVQMR
Trigger: GCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTC...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCTTGTACTCGGCCTCCTaGAAGCGTACCCACTCCAGA +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLLYSAS*KRTHSR
Trigger: TCTGGAGTGGGTACGCTTTCAGGAGGCCGAGTACAA...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCAGACAACTCCCATGGTaGTGTTGGTACAAGCCCCGG +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLRQLPW*CWYKPR
Trigger: CCGGGGCTTGTACCAACATCACCATGGGAGTTGTCT...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCGTGCTGGTGCAGCCGTaGAACCACTGGTTGTCGTAT +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLVLVQP*NHWLSY
Trigger: ATACGACAACCAGTGGTTCCACGGCTGCACCAGCAC...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCCAGCTGTCAGTCAGCTaGTCTTTGTCCCAGAAGGTC +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLQLSVS*SLSQKV
Trigger: GACCTTCTGGGACAAAGACCAGCTGACTGACAGCTG...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTAATCTTGTTGAGCATGTaGGCCACAAAGTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVILLSM*ATKCSS
Trigger: GGAGGAGCACTTTGTGGCCCACATGCTCAACAAGAT...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCGCAATGGTGACCAGCTaGGCTTCTTGCTGTTCACAG +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLAMVTS*ASCCSQ
Trigger: CTGTGAACAGCAAGAAGCCCAGCTGGTCACCATTGC...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR GCA 90 bp ACAGGAGTGACAGATGCTTGGCCAGCCTCTTCAGCTGACCCCCACCCAGAGAGACACTCAAAATTCATCTaGAGTTTCAAATCATTGAGG +
Preference number: 4 (lower is better)
Translates to: TGVTDAWPASSADPHPERHSKFI*SFKSLR
Trigger: CCTCAATGATTTGAAACTGCAGATGAATTTTGAGTG...TCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTAGCAGTTTCAAATCATTaGGGCCAATCCATAGCTCCT +
Preference number: 4 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVAVSNH*GQSIAP
Trigger: AGGAGCTATGGATTGGCCTCAATGATTTGAAACTGC...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR TCA 90 bp TTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGCTCATGTCCCTTCTCATGGCTCTCAGGCTCTaGCTCACCAAAGATCTTGTT +
Preference number: 4 (lower is better)
Translates to: LGSGIWGGKDMNKLMSLLMALRL*LTKDLV
Trigger: AACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCAT...GAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp AGGAAGACATCAGGCTCCAGGAGGGCGGCGGCGGAGTCCGCCGGGTaGCCGAGACGCAGTCCCCCGAGAAGCAAGACGCAGCGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: RKTSGSRRAAAESAG*PRRSPPRSKTQRSR
Trigger: CCTGCTGCGCTGCGTCTTGCTTCTCGGGGGACTGCGTCTCGGCCACCCGGCGGACTCCGCCGCCGCCCTCCTGGAGCCTGATGTCTTCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp GGTCACCCCCACCCCGCAGACACGCCCTCTTGGACTCCTGCCAGCTaGGCTTCTCGGCCTGCAGGCGGTAGCAGTGGCCCTGGAAGGGCT +
Preference number: 5 (lower is better)
Translates to: GHPHPADTPSWTPAS*ASRPAGGSSGPGRA
Trigger: AGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGCGGGGTGGGGGTGACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp GGACCCACGCTCCGCACTCTGTCGGCGCCGGTAGAGGATGAGGGCTaGCGTCATCAAGGCCAGGAGGAGCAGCACCGCTGTCAGCACCAC +
Preference number: 5 (lower is better)
Translates to: GPTLRTLSAPVEDEG*RHQGQEEQHRCQHH
Trigger: GTGGTGCTGACAGCGGTGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAGCGTGGGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp CCTCGAAGGACCCACGCTCCGCACTCTGTCGGCGCCGGTAGAGGATaGGGGCTGCCGTCATCAAGGCCAGGAGGAGCAGCACCGCTGTCA +
Preference number: 5 (lower is better)
Translates to: PRRTHAPHSVGAGRG*GLPSSRPGGAAPLS
Trigger: TGACAGCGGTGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAGCGTGGGTCCTTCGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp CGCTGGGCAGGGAGACTGGCATTGCAGACTGGGGTGACTCGGACCTaGACACCCTGGGCCTCCAGACAGCCCTGCATCCCCTGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: RWAGRLALQTGVTRT*TPWASRQPCIPWLK
Trigger: CTTCAGCCAGGGGATGCAGGGCTGTCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp GCCACTGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATaGATTGCTTGCACGAGCCCCCAGAAGCAGGGACAACTGGTCCCC +
Preference number: 5 (lower is better)
Translates to: ATAGLVTALQGARLG*IACTSPQKQGQLVP
Trigger: GGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp ACACCAGAATGTTCTTCTCGGTGGCCTCTGCGGGGCCAGAGTGGCTaGTGCGACTGTAGCGGGCCCCCTCGAAGGACCCACGCTCCGCAC +
Preference number: 5 (lower is better)
Translates to: TPECSSRWPLRGQSG*CDCSGPPRRTHAPH
Trigger: GTGCGGAGCGTGGGTCCTTCGAGGGGGCCCGCTACAGTCGCAGCAGCCACTCTGGCCCCGCAGAGGCCACCGAGAAGAACATTCTGGTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp GGAGACCCACTTCCAGCGCTGGGCAGGGAGACTGGCATTGCAGACTaGGGTGACTCGGACCTGCACACCCTGGGCCTCCAGACAGCCCTG +
Preference number: 5 (lower is better)
Translates to: GDPLPALGRETGIAD*GDSDLHTLGLQTAL
Trigger: CAGGGCTGTCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CACGTCCAACCCTTCCGGCAGCCGTGGTCCTCCTCCGCAGCGCCCTaGCTCAGCCGGCCTGCCTTCTTGCAAATGGATGGCAAGGACTGG +
Preference number: 5 (lower is better)
Translates to: HVQPFRQPWSSSAAP*LSRPAFLQMDGKDW
Trigger: CCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGGAGGACCACGGCTGCCGGAAGGGTTGGACGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp GGATCACCGCACAGCTGGTCGGCTTGGTGCCACTGGGAGCAGGGCTaGGGCCAGAGGGCTCTCCTGGTGCCCAGTTGGTATAGAGCAGGG +
Preference number: 5 (lower is better)
Translates to: GSPHSWSAWCHWEQG*GQRALLVPSWYRAG
Trigger: CCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGCCCCAGCCCTGCTCCCAGTGGCACCAAGCCGACCAGCTGTGCGGTGATCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp CTCCTCTGTGCAGCTCCGATCATCCCAGCGGCCAGTGAAGTGGGCTaGGGGGCTGTGCAGGATCACCGCACAGCTGGTCGGCTTGGTGCC +
Preference number: 5 (lower is better)
Translates to: LLCAAPIIPAASEVG*GAVQDHRTAGRLGA
Trigger: GGCACCAAGCCGACCAGCTGTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCGCAGACACGCCCTCTaGGACTCCTGCCAGCTGCGC +
Preference number: 5 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSRRHAL*DSCQLR
Trigger: GCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGCG...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp AGCCATGCGTCTCCTCTGTGCAGCTCCGATCATCCCAGCGGCCAGTaGAGTGGGCTGAGGGGCTGTGCAGGATCACCGCACAGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: SHASPLCSSDHPSGQ*SGLRGCAGSPHSWS
Trigger: CGACCAGCTGTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp TGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATGCATTaGTTGCACGAGCCCCCAGAAGCAGGGACAACTGGTCCCCTAGTG +
Preference number: 5 (lower is better)
Translates to: CGSGHRAPGCQAWMH*LHEPPEAGTTGPLV
Trigger: CACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp GCACCCAGGTTGAAGAGTCGGTTCCGGGAGACCCACTTCCAGCGCTaGGCAGGGAGACTGGCATTGCAGACTGGGGTGACTCGGACCTGC +
Preference number: 5 (lower is better)
Translates to: APRLKSRFRETHFQR*AGRLALQTGVTRTC
Trigger: GCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAACCTGGGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp AGACTCAGCAGCTGGGCCCCCAACTCCCGGCAGACCCCCAGGGCCTaGATCCAACTCTTCTTCTCCTGCAGCCGCTCTGAGCTGAACACC +
Preference number: 5 (lower is better)
Translates to: RLSSWAPNSRQTPRA*IQLFFSCSRSELNT
Trigger: GGTGTTCAGCTCAGAGCGGCTGCAGGAGAAGAAGAGTTGGATCCAGGCCCTGGGGGTCTGCCGGGAGTTGGGGGCCCAGCTGCTGAGTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp GAGGCTCCTCTGAGAGCCAGGAATACCTCCGTGAGCCCTCCTCACTaGCCAGCCCGATCCACAGTGGTGTTTGCAGCCCCCGTGCAGCCT +
Preference number: 5 (lower is better)
Translates to: EAPLRARNTSVSPPH*PARSTVVFAAPVQP
Trigger: AGGCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCCAGTGAGGAGGGCTCACGGAGGTATTCCTGGCTCTCAGAGGAGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACGATCCACAGTGGTGTTaGCAGCCCCCGTGCAGCCTG +
Preference number: 5 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHDPQWC*QPPCSL
Trigger: CAGGCTGCACGGGGGCTGCAAACACCACTGTGGATC...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp CTGCTGGGGATGGGCTTAGCGAGGGGTCTGTGCCCTTCTGGCAGATaGAGCCATGCGTCTCCTCTGTGCAGCTCCGATCATCCCAGCGGC +
Preference number: 5 (lower is better)
Translates to: LLGMGLARGLCPSGR*SHASPLCSSDHPSG
Trigger: GCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAGACCCCTCGCTAAGCCCATCCCCAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp CATCTTTCCAGCGCAGTGGCTTCTGCAGCAGCCGGAAGGTGTGGTTaGGATAGGAGAGCTCAGCGCCCGGGGCAGGGGGTGTTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: HLSSAVASAAAGRCG*DRRAQRPGQGVLLL
Trigger: CAGCAGCAACACCCCCTGCCCCGGGCGCTGAGCTCTCCTATCTCAACCACACCTTCCGGCTGCTGCAGAAGCCACTGCGCTGGAAAGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp AGATGTTCCAATGGCCACTGCGGGTCTGGTCACCGCGCTCCAGGGTaGCAGGCTTGGATGCATTGCTTGCACGAGCCCCCAGAAGCAGGG +
Preference number: 5 (lower is better)
Translates to: RCSNGHCGSGHRAPG*QAWMHCLHEPPEAG
Trigger: CCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACATCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp CGTGGTCCTCCTCCGCAGCGCCCTGGCTCAGCCGGCCTGCCTTCTTaGAAATGGATGGCAAGGACTGGTTACAGGGACTGTCGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: RGPPPQRPGSAGLPS*KWMARTGYRDCRSS
Trigger: GCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGGAGGACCACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp CTCCTCACTGGCCAGCCCGATCCACAGTGGTGTTTGCAGCCCCCGTaGAGCCTGTGTGAGGAAGGCTTGTGTGTAGGGATCGGGCACGTG +
Preference number: 5 (lower is better)
Translates to: LLTGQPDPQWCLQPP*SLCEEGLCVGIGHV
Trigger: CACGTGCCCGATCCCTACACACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCCAGTGAGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp AATGGCCACTGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTaGATGCATTGCTTGCACGAGCCCCCAGAAGCAGGGACAACTGGT +
Preference number: 5 (lower is better)
Translates to: NGHCGSGHRAPGCQA*MHCLHEPPEAGTTG
Trigger: ACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACGCAGGGAGACTGGCATaGCAGACTGGGGTGACTCGG +
Preference number: 5 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDAGRLA*QTGVTR
Trigger: CCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGC...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp CCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCTGGGTACTCCCACCCCATCGCTGCAGCGCCTCCTaGTGGCCCAACAGCACCTCC +
Preference number: 5 (lower is better)
Translates to: PLPSLSLASMVGWVLPPHRCSAS*WPNSTS
Trigger: GGAGGTGCTGTTGGGCCACAAGGAGGCGCTGCAGCG...ATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp CCCCAGGAAGTCCAGTTCTGCTTGGCTGTGAACGGAGGTCAGATCTaGCTGGAACCAGGTGCAGATGCGCTGTGCCTGCGCCCACGAGGA +
Preference number: 5 (lower is better)
Translates to: PQEVQFCLAVNGGQI*LEPGADALCLRPRG
Trigger: TCCTCGTGGGCGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTTCACAGCCAAGCAGAACTGGACTTCCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp TCACCCCACACACTGCCCCCTGCAGCTTGGTATCACAGCTGGTGGTaGGCCAGGTTCCATCCACATCCACGTAGGCACAGCCTCCCGAGT +
Preference number: 5 (lower is better)
Translates to: SPHTLPPAAWYHSWW*ARFHPHPRRHSLPS
Trigger: ACTCGGGAGGCTGTGCCTACGTGGATGTGGATGGAACCTGGCGCACCACCAGCTGTGATACCAAGCTGCAGGGGGCAGTGTGTGGGGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCCAGGCTTGGATGCATaGCTTGCACGAGCCCCCAGA +
Preference number: 5 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSPGLDA*LARAPR
Trigger: TCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGG...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp CATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCACCAGCGTGCCTCCTTaGGGGTTGAAGTTCATGCCC +
Preference number: 5 (lower is better)
Translates to: HRPALGHGDWHSPSWLGLTSVPP*GLKFMP
Trigger: GGGCATGAACTTCAACCCCAAAGGAGGCACGCTGGT...GAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTCACAGCTGTGTTGTCTaGCCAGACCAGCGTGCCTCC +
Preference number: 5 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSHSCVV*PDQRAS
Trigger: GGAGGCACGCTGGTCTGGCAAGACAACACAGCTGTG...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp GTTGATGTAGGTCTGCTCGTGGATCTCCGTGATACTCAGCAAGTCTaGACCCTGCTGCTCGCAGCTGGCCCAGGCCTCCCTCCAGGACAG +
Preference number: 5 (lower is better)
Translates to: VDVGLLVDLRDTQQV*TLLLAAGPGLPPGQ
Trigger: CTGTCCTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTTGCTGAGTATCACGGAGATCCACGAGCAGACCTACATCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp CTGAAGCGTCCGTCACTCTCCAAGGTGTGCAGGCCGATCCACCAGTaGTGCTCCTGGTCTGAGGACAGCTTCTGCAGGTTTTGCCCCAGG +
Preference number: 5 (lower is better)
Translates to: LKRPSLSKVCRPIHQ*CSWSEDSFCRFCPR
Trigger: CCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGACGGACGCTTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp GATGGGCTTAGCGAGGGGTCTGTGCCCTTCTGGCAGATGAAGCCATaGGTCTCCTCTGTGCAGCTCCGATCATCCCAGCGGCCAGTGAAG +
Preference number: 5 (lower is better)
Translates to: DGLSEGSVPFWQMKP*VSSVQLRSSQRPVK
Trigger: CTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAGACCCCTCGCTAAGCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp GGCATCACTGTAGATCACTTGGTCCTCTCCCAGCCAGTAGCAGGATaGGCTATGCCACGTCCAACCCTTCCGGCAGCCGTGGTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: GITVDHLVLSQPVAG*AMPRPTLPAAVVLL
Trigger: GAGGAGGACCACGGCTGCCGGAAGGGTTGGACGTGGCATAGCCCATCCTGCTACTGGCTGGGAGAGGACCAAGTGATCTACAGTGATGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCTGTCACGAAAGTTGTaGGGCTCAAAGGGGTGCCAG +
Preference number: 5 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHLSRKL*GSKGCQ
Trigger: CTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAG...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp CATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCAGGCTGTCACGAAAGTaGTTGGGCTCAAAGGGGTGC +
Preference number: 5 (lower is better)
Translates to: HRPALGHGDWHSPSWLGLRLSRK*LGSKGC
Trigger: GCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCT...GAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACGAAGTCCAGTTCTGCTaGGCTGTGAACGGAGGTCAG +
Preference number: 5 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHEVQFC*AVNGGQ
Trigger: CTGACCTCCGTTCACAGCCAAGCAGAACTGGACTTC...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp TTGCAGATCCAGTCAAGCTGCGTCTGGCACTGCATGGGTACCCACTaGAGGGAGGCCAGGTCCAGCACTGCACAGCCTCGGATATCATCG +
Preference number: 5 (lower is better)
Translates to: LQIQSSCVWHCMGTH*REARSSTAQPRISS
Trigger: CGATGATATCCGAGGCTGTGCAGTGCTGGACCTGGCCTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp ACACCTCTAGGGATCTTGCAGATCCAGTCAAGCTGCGTCTGGCACTaGATGGGTACCCACTGCAGGGAGGCCAGGTCCAGCACTGCACAG +
Preference number: 5 (lower is better)
Translates to: TPLGILQIQSSCVWH*MGTHCREARSSTAQ
Trigger: CTGTGCAGTGCTGGACCTGGCCTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTGCAAGATCCCTAGAGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp AAGCGTCCGTCACTCTCCAAGGTGTGCAGGCCGATCCACCAGTGCTaGTCCTGGTCTGAGGACAGCTTCTGCAGGTTTTGCCCCAGGAAG +
Preference number: 5 (lower is better)
Translates to: KRPSLSKVCRPIHQC*SWSEDSFCRFCPRK
Trigger: CTTCCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGACGGACGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CCGTCACTCTCCAAGGTGTGCAGGCCGATCCACCAGTGCTGCTCCTaGTCTGAGGACAGCTTCTGCAGGTTTTGCCCCAGGAAGTCCAGT +
Preference number: 5 (lower is better)
Translates to: PSLSKVCRPIHQCCS*SEDSFCRFCPRKSS
Trigger: ACTGGACTTCCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CACTGGGAGCAGGGCTGGGGCCAGAGGGCTCTCCTGGTGCCCAGTTaGTATAGAGCAGGGGTTCTTGTTCAATCCACTGGAAGTCCCTCT +
Preference number: 5 (lower is better)
Translates to: HWEQGWGQRALLVPS*YRAGVLVQSTGSPS
Trigger: AGAGGGACTTCCAGTGGATTGAACAAGAACCCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGCCCCAGCCCTGCTCCCAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp GCTGTTCGTTCATTTCCATGTCAGACACCAGAATGTTCTTCTCGGTaGCCTCTGCGGGGCCAGAGTGGCTGCTGCGACTGTAGCGGGCCC +
Preference number: 5 (lower is better)
Translates to: AVRSFPCQTPECSSR*PLRGQSGCCDCSGP
Trigger: GGGCCCGCTACAGTCGCAGCAGCCACTCTGGCCCCGCAGAGGCCACCGAGAAGAACATTCTGGTGTCTGACATGGAAATGAACGAACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GGGGTCCAGGTCCAGGTGACACGATCCCAGGCCCAAGGGAAAGGGGAACATGACGACCAGCTGGGCTTCTaGCTGTTCACAGGAGAACTG +
Preference number: 5 (lower is better)
Translates to: GVQVQVTRSQAQGKGEHDDQLGF*LFTGEL
Trigger: CAGTTCTCCTGTGAACAGCAAGAAGCCCAGCTGGTC...GTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGACTCCCATGGTGATGTaGGTACAAGCCCCGGGGCGC +
Preference number: 5 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCETPMVM*VQAPGR
Trigger: GCGCCCCGGGGCTTGTACCAACATCACCATGGGAGT...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGTCCACTCTAGGGAGCTaGCAGACAACTCCCATGGTG +
Preference number: 5 (lower is better)
Translates to: FTSSCTGTRGLALSILAGSTLGS*QTTPMV
Trigger: CACCATGGGAGTTGTCTGCAAGCTCCCTAGAGTGGA...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp GTTCTGCTTGGCTGTGAACGGAGGTCAGATCTGCCTGGAACCAGGTaGAGATGCGCTGTGCCTGCGCCCACGAGGAGTGGTGCTCAAAAA +
Preference number: 5 (lower is better)
Translates to: VLLGCERRSDLPGTR*RCAVPAPTRSGAQK
Trigger: TTTTTGAGCACCACTCCTCGTGGGCGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTTCACAGCCAAGCAGAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp ACATCCACACCTCTAGGGATCTTGCAGATCCAGTCAAGCTGCGTCTaGCACTGCATGGGTACCCACTGCAGGGAGGCCAGGTCCAGCACT +
Preference number: 5 (lower is better)
Translates to: TSTPLGILQIQSSCV*HCMGTHCREARSST
Trigger: AGTGCTGGACCTGGCCTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTGCAAGATCCCTAGAGGTGTGGATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp TCCTGGGGGTCCTGGCCCTGGATTCGGAAACACTTATTGAGGAACTaGTTCCAACCGGAGGGGCAGCCTCCTAAGGCTGAAGGTGGCAAG +
Preference number: 5 (lower is better)
Translates to: SWGSWPWIRKHLLRN*FQPEGQPPKAEGGK
Trigger: CTTGCCACCTTCAGCCTTAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GCCTCTATGGTAGGCTGGGTACTCCCACCCCATGGCAAGCTATGCCCCCGGCACCCGTGGAACCACTGGTaGTCGTATTTGAAGGGGATA +
Preference number: 5 (lower is better)
Translates to: ASMVGWVLPPHGKLCPRHPWNHW*SYLKGI
Trigger: TATCCCCTTCAAATACGACAACCAGTGGTTCCACGG...GTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp CCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACAACTGGGCTGTACTTGAGGGGTGAGTaGTCTGACCACTGCCAGCCT +
Preference number: 5 (lower is better)
Translates to: PRHPVATPKGCHPKTTGLYLRGE*SDHCQP
Trigger: AGGCTGGCAGTGGTCAGACAACTCACCCCTCAAGTA...CAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp CCACTGCCAAGTCTCAGCCTAGCCTCTATGGTAGGCTGGGTACTCCCACCCCATCTGTGTGAGGAAGGCTaGTGTGTAGGGATCGGGCAC +
Preference number: 5 (lower is better)
Translates to: PLPSLSLASMVGWVLPPHLCEEG*CVGIGH
Trigger: GTGCCCGATCCCTACACACAAGCCTTCCTCACACAG...ATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp CGAGCCCCCAGAAGCAGGGACAACTGGTCCCCTAGTGTACGACACTaGCATCGAAGACTCAAGGCCTCTCTGTCACACTCATACATGCCC +
Preference number: 5 (lower is better)
Translates to: RAPRSRDNWSPSVRH*HRRLKASLSHSYMP
Trigger: GGGCATGTATGAGTGTGACAGAGAGGCCTTGAGTCTTCGATGGCAGTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp GAGCACATAGGTCTTCTTCACTGCCATAGATGTTCCAATGGCCACTaGGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATGCAT +
Preference number: 5 (lower is better)
Translates to: EHIGLLHCHRCSNGH*GSGHRAPGCQAWMH
Trigger: ATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACCTATGTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp ACACAGTCCTCCAGGCTGTCACGAAAGTTGTTGGGCTCAAAGGGGTaGCAGTGGGTGAAGCTCACGAGGCTCCCGTCGGACCACTCAAAA +
Preference number: 5 (lower is better)
Translates to: TQSSRLSRKLLGSKG*QWVKLTRLPSDHSK
Trigger: TTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGGAGGACTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp ATAGAACCATCTGTCCACCTGAAGCGTCCGTCACTCTCCAAGGTGTaGAGGCCGATCCACCAGTGCTGCTCCTGGTCTGAGGACAGCTTC +
Preference number: 5 (lower is better)
Translates to: IEPSVHLKRPSLSKV*RPIHQCCSWSEDSF
Trigger: GAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGACGGACGCTTCAGGTGGACAGATGGTTCTAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp TGCAGCCTGTGTGAGGAAGGCTTGTGTGTAGGGATCGGGCACGTGTaGCAGGCTGGCATTTCGGCTCTCACACAGCAGGAGAGCATCTTT +
Preference number: 5 (lower is better)
Translates to: CSLCEEGLCVGIGHV*QAGISALTQQESIF
Trigger: AAAGATGCTCTCCTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCTTCCTCACACAGGCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp GGCTTGGATGCATTGCTTGCACGAGCCCCCAGAAGCAGGGACAACTaGTCCCCTAGTGTACGACACTGCCATCGAAGACTCAAGGCCTCT +
Preference number: 5 (lower is better)
Translates to: GLDALLARAPRSRDN*SPSVRHCHRRLKAS
Trigger: AGAGGCCTTGAGTCTTCGATGGCAGTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CTGCCAGCTGGGGTCACATTCCACCTTGACATTGGTCCACCGGTCTaGCTGGATGGGCTCGACCGTAGCGTTGGGTTTCTTCTTGCAAAC +
Preference number: 5 (lower is better)
Translates to: LPAGVTFHLDIGPPV*LDGLDRSVGFLLAN
Trigger: GTTTGCAAGAAGAAACCCAACGCTACGGTCGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CTGACTCTCCGTGTCCCTTCCCAACTCCCTACCTTATTGAGGAACTaGTTCCAACCGGAGGGGCAGCCTCCTAAGGCTGAAGGTGGCAAG +
Preference number: 5 (lower is better)
Translates to: LTLRVPSQLPTLLRN*FQPEGQPPKAEGGK
Trigger: CTTGCCACCTTCAGCCTTAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGGTAGGGAGTTGGGAAGGGACACGGAGAGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021038.5
CDS CCA 90 bp GGCATTTCGGCTCTCACACAGCAGGAGAGCATCTTTCCAGCGCAGTaGCTTCTGCAGCAGCCGGAAGGTGTGGTTGAGATAGGAGAGCTC +
Preference number: 5 (lower is better)
Translates to: GISALTQQESIFPAQ*LLQQPEGVVEIGEL
Trigger: GAGCTCTCCTATCTCAACCACACCTTCCGGCTGCTGCAGAAGCCACTGCGCTGGAAAGATGCTCTCCTGCTGTGTGAGAGCCGAAATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp TTTGTTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTCACAGTCGTTACTCTaGATGGGGCAGAAGCCCCAG +
Preference number: 5 (lower is better)
Translates to: FVHIVLHWDTGTGTLHPGSQSLL*MGQKPQ
Trigger: CTGGGGCTTCTGCCCCATCAAGAGTAACGACTGTGA...GCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGAGCCGGCCTGCCTTCTaGCAAATGGATGGCAAGGAC +
Preference number: 5 (lower is better)
Translates to: ERERERDHPSPRAMAQKESRPAF*QMDGKD
Trigger: GTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCT...CTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTCTCTCTCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp TTCACATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGATCACTGTAGATCACTaGGTCCTCTCCCAGCCAGTA +
Preference number: 5 (lower is better)
Translates to: FTSSCTGTRGLALSILAGITVDH*VLSQPV
Trigger: TACTGGCTGGGAGAGGACCAAGTGATCTACAGTGAT...CCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GAGGTGACAGAGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGTACTGTTGAGGTCTaGCAGGGCTGTCCAGAAGTA +
Preference number: 5 (lower is better)
Translates to: EVTESHPKGRGRLSRPTDSTVEV*QGCPEV
Trigger: TACTTCTGGACAGCCCTGCAAGACCTCAACAGTACT...ATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp TGCCATCCAAAGACAACTGGGCTGATGGGTGATGGGGGCCTGCTGACCTGGGGCGACTCACCAAAGATCTaGTTGAGCATGTGGGCCACA +
Preference number: 5 (lower is better)
Translates to: CHPKTTGLMGDGGLLTWGDSPKI*LSMWAT
Trigger: TGTGGCCCACATGCTCAACAAGATCTTTGGTGAGTC...GCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GAGAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGGCACTGGGTGACACCTCTAGGGATCTaGCAGATCCAGTCAAGCTGC +
Preference number: 5 (lower is better)
Translates to: EREITQVPGPWLRRRHWVTPLGI*QIQSSC
Trigger: GCAGCTTGACTGGATCTGCAAGATCCCTAGAGGTGT...CACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp CCAGGCTGTCACGAAAGTTGTTGGGCTCAAAGGGGTGCCAGTGGGTaGAGCTCACGAGGCTCCCGTCGGACCACTCAAAATTCATCTGCA +
Preference number: 5 (lower is better)
Translates to: PGCHESCWAQRGASG*SSRGSRRTTQNSSA
Trigger: TGCAGATGAATTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp AGGTGCCCATCTTCTCTGCCAGTGCTGGTGCAGCCGTGGAACCACTaGTTGTCGTATTTGAAGGGGATAGTGCACGGCTTTCCGTGTGAG +
Preference number: 5 (lower is better)
Translates to: RCPSSLPVLVQPWNH*LSYLKGIVHGFPCE
Trigger: CTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp GCACACCACAGGTGCCCATCTTCTCTGCCAGTGCTGGTGCAGCCGTaGAACCACTGGTTGTCGTATTTGAAGGGGATAGTGCACGGCTTT +
Preference number: 5 (lower is better)
Translates to: AHHRCPSSLPVLVQP*NHWLSYLKGIVHGF
Trigger: AAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCTGTGGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp TCCTCCAGGCTGTCACGAAAGTTGTTGGGCTCAAAGGGGTGCCAGTaGGTGAAGCTCACGAGGCTCCCGTCGGACCACTCAAAATTCATC +
Preference number: 5 (lower is better)
Translates to: SSRLSRKLLGSKGCQ*VKLTRLPSDHSKFI
Trigger: GATGAATTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CTCCTGAAAGCGTACCCACTCCAGACGGCCTTGTCGACCAATGTCTaGTTCCCGCACATCCACACCTCTAGGGATCTTGCAGATCCAGTC +
Preference number: 5 (lower is better)
Translates to: LLKAYPLQTALSTNV*FPHIHTSRDLADPV
Trigger: GACTGGATCTGCAAGATCCCTAGAGGTGTGGATGTGCGGGAACCAGACATTGGTCGACAAGGCCGTCTGGAGTGGGTACGCTTTCAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp AACTGTGCCTCTGACCATTTCACCCTGTCCTGGGGGTCCTGGCCCTaGATTCGGAAACACTTATTGAGGAACTGGTTCCAACCGGAGGGG +
Preference number: 5 (lower is better)
Translates to: NCASDHFTLSWGSWP*IRKHLLRNWFQPEG
Trigger: CCCCTCCGGTTGGAACCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp AGGCTGAAGGTGGCAAGTCTTGGGGCTGAGTCTCTCCAGAGCTATTaGTGCGCTTACAGATGTAGGGCAAAGCCGTATGGCACCTCTGGT +
Preference number: 5 (lower is better)
Translates to: RLKVASLGAESLQSY*CAYRCRAKPYGTSG
Trigger: ACCAGAGGTGCCATACGGCTTTGCCCTACATCTGTAAGCGCAGCAATAGCTCTGGAGAGACTCAGCCCCAAGACTTGCCACCTTCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp GCCACACAGCCTCCACGTCTGTACCCAGGCTGGTCTCGATTCCAATaGGTATATATGACTTCATCCCCACTGAGCCAACGGAAGGAGCCA +
Preference number: 5 (lower is better)
Translates to: ATQPPRLYPGWSRFQ*VYMTSSPLSQRKEP
Trigger: TGGCTCCTTCCGTTGGCTCAGTGGGGATGAAGTCATATATACCCATTGGAATCGAGACCAGCCTGGGTACAGACGTGGAGGCTGTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CAGGAGAACTGTGCCTCTGACCATTTCACCCTGTCCTGGGGGTCCTaGCCCTGGATTCGGAAACACTTATTGAGGAACTGGTTCCAACCG +
Preference number: 5 (lower is better)
Translates to: QENCASDHFTLSWGS*PWIRKHLLRNWFQP
Trigger: CGGTTGGAACCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp AGAGCCACCCCAAGGGACGGGGCAGGCTTTCCAGGCCTACAGATAGGAAAGAATAAGGAAACTGTGGTGTaGGTGACTGGCCAGCCTGTA +
Preference number: 5 (lower is better)
Translates to: RATPRDGAGFPGLQIGKNKETVV*VTGQPV
Trigger: TACAGGCTGGCCAGTCACCAACACCACAGTTTCCTT...ATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp ACTCTTTCAAGGACAGAGCCCTCCCCTGACCAGCAGGAGATGACACCCTGTGAGTCCCAGTTGAGGTACTaGAGGGGTGAGTTGTCTGAC +
Preference number: 5 (lower is better)
Translates to: TLSRTEPSPDQQEMTPCESQLRY*RGELSD
Trigger: GTCAGACAACTCACCCCTCAAGTACCTCAACTGGGA...CTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp ATCGTCCTGCACTGGGACACGGGGACTGGCACTCTCCATCCTGGCTGGGACTCTTGCAGTTTCAAATCATaGAGGCCAATCCATAGCTCC +
Preference number: 5 (lower is better)
Translates to: IVLHWDTGTGTLHPGWDSCSFKS*RPIHSS
Trigger: GGAGCTATGGATTGGCCTCAATGATTTGAAACTGCA...AGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp AGTGCTGCTCATGGCTCTCAGGCTCTGACTCACCAAAGATCTTGTTaGGCATGTGGGCCACAAAGTGCTCCTCCTCATAGCTGGCCAGAC +
Preference number: 5 (lower is better)
Translates to: SAAHGSQALTHQRSC*ACGPQSAPPHSWPD
Trigger: GTCTGGCCAGCTATGAGGAGGAGCACTTTGTGGCCCACATGCTCAACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCATGAGCAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp CCCTCTCTAGGGTCTCTGCGGTTCAGGCCAATCCAAAACCAGTGCTaGTCATGGCTCTCAGGCTCTGACTCACCAAAGATCTTGTTGAGC +
Preference number: 5 (lower is better)
Translates to: PSLGSLRFRPIQNQC*SWLSGSDSPKILLS
Trigger: GCTCAACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCATGAGCAGCACTGGTTTTGGATTGGCCTGAACCGCAGAGACCCTAGAGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp TGCTGTTCACAGGAGAACTGTGCCTCTGACCATTTCACCCTGTCCTaGGGGTCCTGGCCCTGGATTCGGAAACACTTATTGAGGAACTGG +
Preference number: 5 (lower is better)
Translates to: CCSQENCASDHFTLS*GSWPWIRKHLLRNW
Trigger: CCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTGTGAACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 90 bp TCTGCAGGTGCTCCCAGACAAACACATTCTCCATCTCATCAAGAATaGACAGAACCGTCCCACCAGCTTTCTGACAGCGCTGCAGCGCCT +
Preference number: 5 (lower is better)
Translates to: SAGAPRQTHSPSHQE*TEPSHQLSDSAAAP
Trigger: AGGCGCTGCAGCGCTGTCAGAAAGCTGGTGGGACGGTTCTGTCCATTCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp CCCCGGCACCCAGTAGCAACTCCCAAGGGTTGCCATCCAAAGACAACTGGGCTGCCAGGACAGTGTGGATaGGAAGTTAAACTGGTAACA +
Preference number: 5 (lower is better)
Translates to: PRHPVATPKGCHPKTTGLPGQCG*EVKLVT
Trigger: TGTTACCAGTTTAACTTCCAATCCACACTGTCCTGG...CAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp GAGAGAGATCACCCAAGTCCCAGGGCCATGGCTCAGAAGGAGGCACTGGGTGGATCTTGCTTGATCTGTTaGGTGATGAACTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: ERDHPSPRAMAQKEALGGSCLIC*VMNSSS
Trigger: TGAGCTGGAGTTCATCACCAAACAGATCAAGCAAGA...TCCACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp TGGTGTAGACCTCATAGTAAGGTCGAGCACATAGGTCTTCTTCACTaGCATAGATGTTCCAATGGCCACTGCGGGTCTGGTCACCGCGCT +
Preference number: 5 (lower is better)
Translates to: WCRPHSKVEHIGLLH*HRCSNGHCGSGHRA
Trigger: AGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACCTATGTGCTCGACCTTACTATGAGGTCTACACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp TCACTCTCCCAGTTGAGGTACTTGAGGGGTGAGTTGTCTGACCACTaGCAGCCTCCACTGGTATCCAGGTCATTAAGGCCAATCCATAGC +
Preference number: 5 (lower is better)
Translates to: SLSQLRYLRGELSDH*QPPLVSRSLRPIHS
Trigger: GCTATGGATTGGCCTTAATGACCTGGATACCAGTGGAGGCTGGCAGTGGTCAGACAACTCACCCCTCAAGTACCTCAACTGGGAGAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 90 bp CTAGGGTCTCTGCGGTTCAGGCCAATCCAAAACCAGTGCTGCTCATaGCTCTCAGGCTCTGACTCACCAAAGATCTTGTTGAGCATGTGG +
Preference number: 5 (lower is better)
Translates to: LGSLRFRPIQNQCCS*LSGSDSPKILLSMW
Trigger: CCACATGCTCAACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCATGAGCAGCACTGGTTTTGGATTGGCCTGAACCGCAGAGACCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGCACTGGTTGTCGTATTaGAAGGGGATAGTGCACGGC +
Preference number: 5 (lower is better)
Translates to: KPEPEAGDIRELILVPTGHWLSY*KGIVHG
Trigger: GCCGTGCACTATCCCCTTCAAATACGACAACCAGTG...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGGGCTCGACCGTAGCGTaGGGTTTCTTCTTGCAAACA +
Preference number: 5 (lower is better)
Translates to: KPEPEAGDIRELILVPTGGSTVA*GFFLQT
Trigger: TGTTTGCAAGAAGAAACCCAACGCTACGGTCGAGCC...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp AATGCTTGCTCTAAGGGGTTTGCAATGGTGACCAGCTGGGCTTCTTaGTGTTCACAGGAGAACTGTGCCTCTGACCATTTCACCCTGTCC +
Preference number: 5 (lower is better)
Translates to: NACSKGFAMVTSWAS*CSQENCASDHFTLS
Trigger: GGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTGTGAACAGCAAGAAGCCCAGCTGGTCACCATTGCAAACCCCTTAGAGCAAGCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp ATGCCCAACCAGGCACCTCGACTTTGGGCTTCAGCTGTCTGCAGGTaGTCCCAGACAAACACATTCTCCATCTCATCAAGAATGGACAGA +
Preference number: 5 (lower is better)
Translates to: MPNQAPRLWASAVCR*SQTNTFSISSRMDR
Trigger: TCTGTCCATTCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 90 bp CCACTGGTTGTCGTATTTGAAGGGGATAGTGCACGGCTTTCCGTGTaGGTTTCCCTGGATGGTGTAGACCTCATAGTAAGGTCGAGCACA +
Preference number: 5 (lower is better)
Translates to: PLVVVFEGDSARLSV*VSLDGVDLIVRSST
Trigger: TGTGCTCGACCTTACTATGAGGTCTACACCATCCAGGGAAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp TGGGTGAAGCTCACGAGGCTCCCGTCGGACCACTCAAAATTCATCTaGAGTTTCAAATCATTGAGGCCAATCCATAGCTCCTCCACCTCT +
Preference number: 5 (lower is better)
Translates to: WVKLTRLPSDHSKFI*SFKSLRPIHSSSTS
Trigger: AGAGGTGGAGGAGCTATGGATTGGCCTCAATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 90 bp AAGTTCATGCCCAACCAGGCACCTCGACTTTGGGCTTCAGCTGTCTaGAGGTGCTCCCAGACAAACACATTCTCCATCTCATCAAGAATG +
Preference number: 5 (lower is better)
Translates to: KFMPNQAPRLWASAV*RCSQTNTFSISSRM
Trigger: CATTCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGGCATGAACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp AAAAAGGTGCTGAGTGGTTCCATGAGTTGGTCTCCTAGGCCACACCAGATGGTATCAGTCAGCTGGTCTTaGTCCCAGAAGGTCTCACAG +
Preference number: 5 (lower is better)
Translates to: KKVLSGSMSWSPRPHQMVSVSWS*SQKVSQ
Trigger: CTGTGAGACCTTCTGGGACAAAGACCAGCTGACTGA...TACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp AAGCCAGAGCCAGAAGCCGGAGACATTAGGGAACTTATTTTGGTCCCCACAGGGTCCTCCACCTCTTGCTaGATCTGTTTGGTGATGAAC +
Preference number: 5 (lower is better)
Translates to: KPEPEAGDIRELILVPTGSSTSC*ICLVMN
Trigger: GTTCATCACCAAACAGATCAAGCAAGAGGTGGAGGA...CCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS-3UTR CAA 90 bp TGCAGGTCAGCAGGTTTAGGCTCAGGGATCTGGGGAGGAAAAGACATGAATAAGTCACCAAAGATCTTGTaGAGCATGTGGGCCACAAAG +
Preference number: 5 (lower is better)
Translates to: CRSAGLGSGIWGGKDMNKSPKIL*SMWATK
Trigger: CTTTGTGGCCCACATGCTCAACAAGATCTTTGGTGA...CTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 90 bp GTATACACACTTCTTGTCCTTGCCAATGGGTCTAGGTTTTCCCGGTaGCCAAGAGATGAAGTTTATAATAGAACCATCTGTCCACCTGAA +
Preference number: 5 (lower is better)
Translates to: VYTLLVLANGSRFSR*PRDEVYNRTICPPE
Trigger: TTCAGGTGGACAGATGGTTCTATTATAAACTTCATCTCTTGGGCACCGGGAAAACCTAGACCCATTGGCAAGGACAAGAAGTGTGTATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp TCAGGCTCCAGGAGGGCGGCGGCGGAGTCCGCCGGGTaGCCGAGACGCAGTCCCCCGAGAAGCAAGACGCAG +
Preference number: 6 (lower is better)
Translates to: SGSRRAAAESAG*PRRSPPRSKTQ
Trigger: CTGCGTCTTGCTTCTCGGGGGACTGCGTCTCGGCCACCCGGCGGACTCCGCCGCCGCCCTCCTGGAGCCTGA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp CGCAGTCCCCCGAGAAGCAAGACGCAGCGCAGCAGGTaGCGAGGCCAGGGCGCGAGGGCAGGTCGGATGGGT +
Preference number: 6 (lower is better)
Translates to: RSPPRSKTQRSR*RGQGARAGRMG
Trigger: ACCCATCCGACCTGCCCTCGCGCCCTGGCCTCGTCACCTGCTGCGCTGCGTCTTGCTTCTCGGGGGACTGCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CACCCCGCAGACACGCCCTCTTGGACTCCTGCCAGCTaGGCTTCTCGGCCTGCAGGCGGTAGCAGTGGCCCT +
Preference number: 6 (lower is better)
Translates to: HPADTPSWTPAS*ASRPAGGSSGP
Trigger: AGGGCCACTGCTACCGCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGCGGGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp CCCTTCCGGCAGCCGTGGTCCTCCTCCGCAGCGCCCTaGCTCAGCCGGCCTGCCTTCTTGCAAATGGATGGC +
Preference number: 6 (lower is better)
Translates to: PFRQPWSSSAAP*LSRPAFLQMDG
Trigger: GCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGGAGGACCACGGCTGCCGGAAGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp TGTTCTTCTCGGTGGCCTCTGCGGGGCCAGAGTGGCTaGTGCGACTGTAGCGGGCCCCCTCGAAGGACCCAC +
Preference number: 6 (lower is better)
Translates to: CSSRWPLRGQSG*CDCSGPPRRTH
Trigger: GTGGGTCCTTCGAGGGGGCCCGCTACAGTCGCAGCAGCCACTCTGGCCCCGCAGAGGCCACCGAGAAGAACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp CGGTTCCGGGAGACCCACTTCCAGCGCTGGGCAGGGAGACTGGCATaGCAGACTGGGGTGACTCGGACCTGCACACCCTGGGCCTCCAGA +
Preference number: 6 (lower is better)
Translates to: RFRETHFQRWAGRLA*QTGVTRTCTPWASR
Trigger: TCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp AGCGCTGGGCAGGGAGACTGGCATTGCAGACTGGGGTaGCTCGGACCTGCACACCCTGGGCCTCCAGACAGC +
Preference number: 6 (lower is better)
Translates to: SAGQGDWHCRLG*LGPAHPGPPDS
Trigger: GCTGTCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp AGCGCAGTGGCTTCTGCAGCAGCCGGAAGGTGTGGTTaGGATAGGAGAGCTCAGCGCCCGGGGCAGGGGGTG +
Preference number: 6 (lower is better)
Translates to: SAVASAAAGRCG*DRRAQRPGQGV
Trigger: CACCCCCTGCCCCGGGCGCTGAGCTCTCCTATCTCAACCACACCTTCCGGCTGCTGCAGAAGCCACTGCGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 72 bp ACCCACGCTCCGCACTCTGTCGGCGCCGGTAGAGGATaGGGGCTGCCGTCATCAAGGCCAGGAGGAGCAGCA +
Preference number: 6 (lower is better)
Translates to: THAPHSVGAGRG*GLPSSRPGGAA
Trigger: TGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAGCGTGGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp CTCCGCACTCTGTCGGCGCCGGTAGAGGATGAGGGCTaGCGTCATCAAGGCCAGGAGGAGCAGCACCGCTGT +
Preference number: 6 (lower is better)
Translates to: LRTLSAPVEDEG*RHQGQEEQHRC
Trigger: ACAGCGGTGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp CTTCCAGCGCTGGGCAGGGAGACTGGCATTGCAGACTaGGGTGACTCGGACCTGCACACCCTGGGCCTCCAG +
Preference number: 6 (lower is better)
Translates to: LPALGRETGIAD*GDSDLHTLGLQ
Trigger: CTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp TGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTaGATGCATTGCTTGCACGAGCCCCCAGAAGCAGGG +
Preference number: 6 (lower is better)
Translates to: CGSGHRAPGCQA*MHCLHEPPEAG
Trigger: CCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp CTGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTaGGATGCATTGCTTGCACGAGCCCCCAGAAGCAGG +
Preference number: 6 (lower is better)
Translates to: LRVWSPRSRVPG*DALLARAPRSR
Trigger: CCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp ACCGCGCTCCAGGGTGCCAGGCTTGGATGCATTGCTTaGACGAGCCCCCAGAAGCAGGGACAACTGGTCCCC +
Preference number: 6 (lower is better)
Translates to: TALQGARLGCIA*TSPQKQGQLVP
Trigger: GGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp AATGGCCACTGCGGGTCTGGTCACCGCGCTCCAGGGTaGCAGGCTTGGATGCATTGCTTGCACGAGCCCCCA +
Preference number: 6 (lower is better)
Translates to: NGHCGSGHRAPG*QAWMHCLHEPP
Trigger: TGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CAGTCAAGCTGCGTCTGGCACTGCATGGGTACCCACTaGAGGGAGGCCAGGTCCAGCACTGCACAGCCTCGG +
Preference number: 6 (lower is better)
Translates to: QSSCVWHCMGTH*REARSSTAQPR
Trigger: CCGAGGCTGTGCAGTGCTGGACCTGGCCTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GCATTGCAGACTGGGGTGACTCGGACCTGCACACCCTaGGCCTCCAGACAGCCCTGCATCCCCTGGCTGAAG +
Preference number: 6 (lower is better)
Translates to: ALQTGVTRTCTP*ASRQPCIPWLK
Trigger: CTTCAGCCAGGGGATGCAGGGCTGTCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp CTGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATGCATaGCTTGCACGAGCCCCCAGAAGCAGGGACAACTGGTCCCCTAGT +
Preference number: 6 (lower is better)
Translates to: LRVWSPRSRVPGLDA*LARAPRSRDNWSPS
Trigger: ACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp CAATGGCCACTGCGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTaGGATGCATTGCTTGCACGAGCCCCCAGAAGCAGGGACAACTGG +
Preference number: 6 (lower is better)
Translates to: QWPLRVWSPRSRVPG*DALLARAPRSRDNW
Trigger: CCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp GCCAGCCTGTACCCAGGCACTGTGTGGCACCCAGGTTaGAGAGTCGGTTCCGGGAGACCCACTTCCAGCGCT +
Preference number: 6 (lower is better)
Translates to: ASLYPGTVWHPG*RVGSGRPTSSA
Trigger: AGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAACCTGGGTGCCACACAGTGCCTGGGTACAGGCTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp TCTCCTCTGTGCAGCTCCGATCATCCCAGCGGCCAGTaGAGTGGGCTGAGGGGCTGTGCAGGATCACCGCAC +
Preference number: 6 (lower is better)
Translates to: SPLCSSDHPSGQ*SGLRGCAGSPH
Trigger: GTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp GGTCACCGCGCTCCAGGGTGCCAGGCTTGGATGCATTaGTTGCACGAGCCCCCAGAAGCAGGGACAACTGGT +
Preference number: 6 (lower is better)
Translates to: GHRAPGCQAWMH*LHEPPEAGTTG
Trigger: ACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATaGATTGCTTGCACGAGCCCCCAGAAGCAGGGACAA +
Preference number: 6 (lower is better)
Translates to: GLVTALQGARLG*IACTSPQKQGQ
Trigger: TTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GGTCTGCTCGTGGATCTCCGTGATACTCAGCAAGTCTaGACCCTGCTGCTCGCAGCTGGCCCAGGCCTCCCT +
Preference number: 6 (lower is better)
Translates to: GLLVDLRDTQQV*TLLLAAGPGLP
Trigger: AGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTTGCTGAGTATCACGGAGATCCACGAGCAGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GGCTGTGAACGGAGGTCAGATCTGCCTGGAACCAGGTaGAGATGCGCTGTGCCTGCGCCCACGAGGAGTGGT +
Preference number: 6 (lower is better)
Translates to: GCERRSDLPGTR*RCAVPAPTRSG
Trigger: ACCACTCCTCGTGGGCGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTTCACAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CCCTCCTCACTGGCCAGCCCGATCCACAGTGGTGTTTaGAGCCCCCGTGCAGCCTGTGTGAGGAAGGCTTGT +
Preference number: 6 (lower is better)
Translates to: PSSLASPIHSGV*SPRAACVRKAC
Trigger: ACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCCAGTGAGGAGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp TGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATGCATaGCTTGCACGAGCCCCCAGAAGCAGGGACAACTGG +
Preference number: 6 (lower is better)
Translates to: WSPRSRVPGLDA*LARAPRSRDNW
Trigger: CCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp CCCTGGAAGGGCTGCCAGCTGGGGTCACATTCCACCTaGACATTGGTCCACCGGTCTGGCTGGATGGGCTCG +
Preference number: 6 (lower is better)
Translates to: PWKGCQLGSHST*TLVHRSGWMGS
Trigger: CGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTTCCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp TGTTTGCAGCCCCCGTGCAGCCTGTGTGAGGAAGGCTaGTGTGTAGGGATCGGGCACGTGTGCCAGGCTGGC +
Preference number: 6 (lower is better)
Translates to: CLQPPCSLCEEG*CVGIGHVCQAG
Trigger: GCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp GGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCTTGGATGCATTGCTaGCACGAGCCCCCAGAAGCAGGGACAACTGGTCCCCTAGTGTAC +
Preference number: 6 (lower is better)
Translates to: GSGHRAPGCQAWMHC*HEPPEAGTTGPLVY
Trigger: GTACACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCATCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp TGGCCCTGGAAGGGCTGCCAGCTGGGGTCACATTCCACCTTGACATaGGTCCACCGGTCTGGCTGGATGGGCTCGACCGTAGCGTTGGGT +
Preference number: 6 (lower is better)
Translates to: WPWKGCQLGSHSTLT*VHRSGWMGSTVALG
Trigger: ACCCAACGCTACGGTCGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTTCCAGGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp CCACAGTGGTGTTTGCAGCCCCCGTGCAGCCTGTGTGAGGAAGGCTaGTGTGTAGGGATCGGGCACGTGTGCCAGGCTGGCATTTCGGCT +
Preference number: 6 (lower is better)
Translates to: PQWCLQPPCSLCEEG*CVGIGHVCQAGISA
Trigger: AGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACACCACTGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 72 bp CCTGGAAGGGCTGCCAGCTGGGGTCACATTCCACCTTaGCATTGGTCCACCGGTCTGGCTGGATGGGCTCGA +
Preference number: 6 (lower is better)
Translates to: PGRAASWGHIPP*HWSTGLAGWAR
Trigger: TCGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CCTGGGTGGTGGCACACCACAGGTGCCCATCTTCTCTaGCAGTGCTGGTGCAGCCGTGGAACCACTGGTTGT +
Preference number: 6 (lower is better)
Translates to: PGWWHTTGAHLL*QCWCSRGTTGC
Trigger: ACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCTGTGGTGTGCCACCACCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp TGGATCTCCGTGATACTCAGCAAGTCTGCACCCTGCTaGTCGCAGCTGGCCCAGGCCTCCCTCCAGGACAGT +
Preference number: 6 (lower is better)
Translates to: WISVILSKSAPC*SQLAQASLQDS
Trigger: ACTGTCCTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTTGCTGAGTATCACGGAGATCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CCTCCGCAGCGCCCTGGCTCAGCCGGCCTGCCTTCTTaGAAATGGATGGCAAGGACTGGTTACAGGGACTGT +
Preference number: 6 (lower is better)
Translates to: PPQRPGSAGLPS*KWMARTGYRDC
Trigger: ACAGTCCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GAACGGAGGTCAGATCTGCCTGGAACCAGGTGCAGATaGGCTGTGCCTGCGCCCACGAGGAGTGGTGCTCAA +
Preference number: 6 (lower is better)
Translates to: ERRSDLPGTRCR*AVPAPTRSGAQ
Trigger: TTGAGCACCACTCCTCGTGGGCGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp AGCGAGGGGTCTGTGCCCTTCTGGCAGATGAAGCCATaGGTCTCCTCTGTGCAGCTCCGATCATCCCAGCGG +
Preference number: 6 (lower is better)
Translates to: SEGSVPFWQMKP*VSSVQLRSSQR
Trigger: CCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAGACCCCTCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp GGCCAGCCCGATCCACAGTGGTGTTTGCAGCCCCCGTaGAGCCTGTGTGAGGAAGGCTTGTGTGTAGGGATC +
Preference number: 6 (lower is better)
Translates to: GQPDPQWCLQPP*SLCEEGLCVGI
Trigger: GATCCCTACACACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp TCCGGCCCCCAGATGGTGACACAGTCCTCCAGGCTGTCACGAAAGTaGTTGGGCTCAAAGGGGTGCCAGTGGGTGAAGCTCACGAGGCTC +
Preference number: 6 (lower is better)
Translates to: SGPQMVTQSSRLSRK*LGSKGCQWVKLTRL
Trigger: GAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGGAGGACTGTGTCACCATCTGGGGGCCGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp CAGGGCGATGCTGCAGTCATGGTTCTGCCAGCCGCCTaGGGACTCAGTCCGGATCACTCCACAGTTCTCCTC +
Preference number: 6 (lower is better)
Translates to: QGDAAVMVLPAA*GLSPDHSTVLL
Trigger: GAGGAGAACTGTGGAGTGATCCGGACTGAGTCCTCAGGCGGCTGGCAGAACCATGACTGCAGCATCGCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GGTCTTCTTCACTGCCATAGATGTTCCAATGGCCACTaGGGGTCTGGTCACCGCGCTCCAGGGTGCCAGGCT +
Preference number: 6 (lower is better)
Translates to: GLLHCHRCSNGH*GSGHRAPGCQA
Trigger: AGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp TCCAGGCTGTCACGAAAGTTGTTGGGCTCAAAGGGGTaGCAGTGGGTGAAGCTCACGAGGCTCCCGTCGGAC +
Preference number: 6 (lower is better)
Translates to: SRLSRKLLGSKG*QWVKLTRLPSD
Trigger: GTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GGCTCTGTCGGCAGATGTAGCGAGCCCGGAACGATGTaGAGTTCTTCACCTCCCACAGTCCCATGGCACTGC +
Preference number: 6 (lower is better)
Translates to: GSVGRCSEPGTM*SSSPPTVPWHC
Trigger: GCAGTGCCATGGGACTGTGGGAGGTGAAGAACTGCACATCGTTCCGGGCTCGCTACATCTGCCGACAGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GTCCAGTTCTGCTTGGCTGTGAACGGAGGTCAGATCTaGCTGGAACCAGGTGCAGATGCGCTGTGCCTGCGC +
Preference number: 6 (lower is better)
Translates to: VQFCLAVNGGQI*LEPGADALCLR
Trigger: GCGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTTCACAGCCAAGCAGAACTGGAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp TCTGTCCACCTGAAGCGTCCGTCACTCTCCAAGGTGTaGAGGCCGATCCACCAGTGCTGCTCCTGGTCTGAG +
Preference number: 6 (lower is better)
Translates to: SVHLKRPSLSKV*RPIHQCCSWSE
Trigger: CTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGACGGACGCTTCAGGTGGACAGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp ACACTGCCCCCTGCAGCTTGGTATCACAGCTGGTGGTaGGCCAGGTTCCATCCACATCCACGTAGGCACAGC +
Preference number: 6 (lower is better)
Translates to: TLPPAAWYHSWW*ARFHPHPRRHS
Trigger: GCTGTGCCTACGTGGATGTGGATGGAACCTGGCGCACCACCAGCTGTGATACCAAGCTGCAGGGGGCAGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp TGTTGGTACAAGCCCCGGGGCGCCACAGTCCGCTGCTaGTCTGGATCCAGTAGCAGCTGTTGTGGCTTAGCA +
Preference number: 6 (lower is better)
Translates to: CWYKPRGATVRC*SGSSSSCCGLA
Trigger: TGCTAAGCCACAACAGCTGCTACTGGATCCAGAGCAGCAGCGGACTGTGGCGCCCCGGGGCTTGTACCAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp TTGAAGAGTCGGTTCCGGGAGACCCACTTCCAGCGCTaGGCAGGGAGACTGGCATTGCAGACTGGGGTGACT +
Preference number: 6 (lower is better)
Translates to: LKSRFRETHFQR*AGRLALQTGVT
Trigger: AGTCACCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp TCTTGCAGATCCAGTCAAGCTGCGTCTGGCACTGCATaGGTACCCACTGCAGGGAGGCCAGGTCCAGCACTG +
Preference number: 6 (lower is better)
Translates to: SCRSSQAASGTA*VPTAGRPGPAL
Trigger: CAGTGCTGGACCTGGCCTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTGCAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp TCCAAGGTGTGCAGGCCGATCCACCAGTGCTGCTCCTaGTCTGAGGACAGCTTCTGCAGGTTTTGCCCCAGG +
Preference number: 6 (lower is better)
Translates to: SKVCRPIHQCCS*SEDSFCRFCPR
Trigger: CCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp CACACACTGCCCCCTGCAGCTTGGTATCACAGCTGGTaGTGCGCCAGGTTCCATCCACATCCACGTAGGCAC +
Preference number: 6 (lower is better)
Translates to: HTLPPAAWYHSW*CARFHPHPRRH
Trigger: GTGCCTACGTGGATGTGGATGGAACCTGGCGCACCACCAGCTGTGATACCAAGCTGCAGGGGGCAGTGTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp AAGGGCTGCCAGCTGGGGTCACATTCCACCTTGACATaGGTCCACCGGTCTGGCTGGATGGGCTCGACCGTA +
Preference number: 6 (lower is better)
Translates to: KGCQLGSHSTLT*VHRSGWMGSTV
Trigger: TACGGTCGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp CTCGGCCTCCTGAAAGCGTACCCACTCCAGACGGCCTaGTCGACCAATGTCTGGTTCCCGCACATCCACACC +
Preference number: 6 (lower is better)
Translates to: LGLLKAYPLQTA*STNVWFPHIHT
Trigger: GGTGTGGATGTGCGGGAACCAGACATTGGTCGACAAGGCCGTCTGGAGTGGGTACGCTTTCAGGAGGCCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp ACTCTAGGGAGCTTGCAGACAACTCCCATGGTGATGTaGGTACAAGCCCCGGGGCGCCACAGTCCGCTGCTG +
Preference number: 6 (lower is better)
Translates to: TLGSLQTTPMVM*VQAPGRHSPLL
Trigger: CAGCAGCGGACTGTGGCGCCCCGGGGCTTGTACCAACATCACCATGGGAGTTGTCTGCAAGCTCCCTAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 72 bp CCTGGGGGTCCTGGCCCTGGATTCGGAAACACTTATTaGGGAACTGGTTCCAACCGGAGGGGCAGCCTCCTA +
Preference number: 6 (lower is better)
Translates to: PGGPGPGFGNTY*GTGSNRRGSLL
Trigger: TAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 72 bp CTGGGCTTCTTGCTGTTCACAGGAGAACTGTGCCTCTaGCCATTTCACCCTGTCCTGGGGGTCCTGGCCCTG +
Preference number: 6 (lower is better)
Translates to: LGFLLFTGELCL*PFHPVLGVLAL
Trigger: CAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTGTGAACAGCAAGAAGCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp CATGGGTACCCACTGCAGGGAGGCCAGGTCCAGCACTaGACAGCCTCGGATATCATCGTCATCATGTCGGCT +
Preference number: 6 (lower is better)
Translates to: HGYPLQGGQVQH*TASDIIVIMSA
Trigger: AGCCGACATGATGACGATGATATCCGAGGCTGTGCAGTGCTGGACCTGGCCTCCCTGCAGTGGGTACCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CCGTCACTCTCCAAGGTGTGCAGGCCGATCCACCAGTaGTGCTCCTGGTCTGAGGACAGCTTCTGCAGGTTT +
Preference number: 6 (lower is better)
Translates to: PSLSKVCRPIHQ*CSWSEDSFCRF
Trigger: AAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp TGTGAGGAAGGCTTGTGTGTAGGGATCGGGCACGTGTaGCAGGCTGGCATTTCGGCTCTCACACAGCAGGAG +
Preference number: 6 (lower is better)
Translates to: CEEGLCVGIGHV*QAGISALTQQE
Trigger: CTCCTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCTTCCTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp CTGTCACGAAAGTTGTTGGGCTCAAAGGGGTGCCAGTaGGTGAAGCTCACGAGGCTCCCGTCGGACCACTCA +
Preference number: 6 (lower is better)
Translates to: LSRKLLGSKGCQ*VKLTRLPSDHS
Trigger: TGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp AGCCGGCCTGCCTTCTTGCAAATGGATGGCAAGGACTaGTTACAGGGACTGTCGTTCCAGCGTCCTTCCGGC +
Preference number: 6 (lower is better)
Translates to: SRPAFLQMDGKD*LQGLSFQRPSG
Trigger: GCCGGAAGGACGCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp CAGGGCTGGGGCCAGAGGGCTCTCCTGGTGCCCAGTTaGTATAGAGCAGGGGTTCTTGTTCAATCCACTGGA +
Preference number: 6 (lower is better)
Translates to: QGWGQRALLVPS*YRAGVLVQSTG
Trigger: TCCAGTGGATTGAACAAGAACCCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGCCCCAGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp TCCTGGGGGTCCTGGCCCTGGATTCGGAAACACTTATaGAGGAACTGGTTCCAACCGGAGGGGCAGCCTCCT +
Preference number: 6 (lower is better)
Translates to: SWGSWPWIRKHL*RNWFQPEGQPP
Trigger: AGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp AGAGCCATGGTCAGTACACAGGCGCCGGGCATCACTGTAGATCACTaGGTCCTCTCCCAGCCAGTAGCAGGATGGGCTATGCCACGTCCA +
Preference number: 6 (lower is better)
Translates to: RAMVSTQAPGITVDH*VLSQPVAGWAMPRP
Trigger: TGGACGTGGCATAGCCCATCCTGCTACTGGCTGGGAGAGGACCAAGTGATCTACAGTGATGCCCGGCGCCTGTGTACTGACCATGGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp AAGGCCTCTCTGTCACACTCATACATGCCCAAGGAAACTGTGGTGTaGGTGACTGGCCAGCCTGTACCCAGGCACTGTGTGGCACCCAGG +
Preference number: 6 (lower is better)
Translates to: KASLSHSYMPKETVV*VTGQPVPRHCVAPR
Trigger: CCTGGGTGCCACACAGTGCCTGGGTACAGGCTGGCCAGTCACCAACACCACAGTTTCCTTGGGCATGTATGAGTGTGACAGAGAGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp AGGGCTGCTGATGGCAAGAAGCTGTTCTCTTCCACTCTAGGGAGCTaGCAGACAACTCCCATGGTGATGTTGGTACAAGCCCCGGGGCGC +
Preference number: 6 (lower is better)
Translates to: RAADGKKLFSSTLGS*QTTPMVMLVQAPGR
Trigger: GCGCCCCGGGGCTTGTACCAACATCACCATGGGAGTTGTCTGCAAGCTCCCTAGAGTGGAAGAGAACAGCTTCTTGCCATCAGCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 72 bp ATGGGCTTAGCGAGGGGTCTGTGCCCTTCTGGCAGATaGAGCCATGCGTCTCCTCTGTGCAGCTCCGATCAT +
Preference number: 6 (lower is better)
Translates to: MGLARGLCPSGR*SHASPLCSSDH
Trigger: ATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAGACCCCTCGCTAAGCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp TCCACACCTCTAGGGATCTTGCAGATCCAGTCAAGCTaGGTCTGGCACTGCATGGGTACCCACTGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: STPLGILQIQSS*VWHCMGTHCRE
Trigger: CTCCCTGCAGTGGGTACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTGCAAGATCCCTAGAGGTGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp TCACTCTCCAAGGTGTGCAGGCCGATCCACCAGTGCTaGTCCTGGTCTGAGGACAGCTTCTGCAGGTTTTGC +
Preference number: 6 (lower is better)
Translates to: SLSKVCRPIHQC*SWSEDSFCRFC
Trigger: GCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTTGGAGAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GCATTGCTTGCACGAGCCCCCAGAAGCAGGGACAACTaGTCCCCTAGTGTACGACACTGCCATCGAAGACTC +
Preference number: 6 (lower is better)
Translates to: ALLARAPRSRDN*SPSVRHCHRRL
Trigger: GAGTCTTCGATGGCAGTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GGGGTCACATTCCACCTTGACATTGGTCCACCGGTCTaGCTGGATGGGCTCGACCGTAGCGTTGGGTTTCTT +
Preference number: 6 (lower is better)
Translates to: GVTFHLDIGPPV*LDGLDRSVGFL
Trigger: AAGAAACCCAACGCTACGGTCGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp AGGCTTGTGTGTAGGGATCGGGCACGTGTGCCAGGCTaGCATTTCGGCTCTCACACAGCAGGAGAGCATCTT +
Preference number: 6 (lower is better)
Translates to: RLVCRDRARVPG*HFGSHTAGEHL
Trigger: AAGATGCTCTCCTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp GTCAGTACACAGGCGCCGGGCATCACTGTAGATCACTaGGTCCTCTCCCAGCCAGTAGCAGGATGGGCTATG +
Preference number: 6 (lower is better)
Translates to: VSTQAPGITVDH*VLSQPVAGWAM
Trigger: CATAGCCCATCCTGCTACTGGCTGGGAGAGGACCAAGTGATCTACAGTGATGCCCGGCGCCTGTGTACTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp TCCTCTCCTCTGACTCTCCGTGTCCCTTCCCAACTCCCTACCTTATaGAGGAACTGGTTCCAACCGGAGGGGCAGCCTCCTAAGGCTGAA +
Preference number: 6 (lower is better)
Translates to: SSPLTLRVPSQLPTL*RNWFQPEGQPPKAE
Trigger: TTCAGCCTTAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGGTAGGGAGTTGGGAAGGGACACGGAGAGTCAGAGGAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021038.5
CDS CAA 90 bp GCCAGAGGGCTCTCCTGGTGCCCAGTTGGTATAGAGCAGGGGTTCTaGTTCAATCCACTGGAAGTCCCTCTGAGAGGCATGCAGGCCAAT +
Preference number: 6 (lower is better)
Translates to: ARGLSWCPVGIEQGF*FNPLEVPLRGMQAN
Trigger: ATTGGCCTGCATGCCTCTCAGAGGGACTTCCAGTGGATTGAACAAGAACCCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS TCA 72 bp CACACTCATACATGCCCAAGGAAACTGTGGTGTTGGTaGCTGGCCAGCCTGTACCCAGGCACTGTGTGGCAC +
Preference number: 6 (lower is better)
Translates to: HTHTCPRKLWCW*LASLYPGTVWH
Trigger: GTGCCACACAGTGCCTGGGTACAGGCTGGCCAGTCACCAACACCACAGTTTCCTTGGGCATGTATGAGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp CACGAAAGTTGTTGGGCTCAAAGGGGTGCCAGTGGGTaGAGCTCACGAGGCTCCCGTCGGACCACTCAAAAT +
Preference number: 6 (lower is better)
Translates to: HESCWAQRGASG*SSRGSRRTTQN
Trigger: ATTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp ATCCACCAGTGCTGCTCCTGGTCTGAGGACAGCTTCTaGAGGTTTTGCCCCAGGAAGTCCAGTTCTGCTTGG +
Preference number: 6 (lower is better)
Translates to: IHQCCSWSEDSF*RFCPRKSSSAW
Trigger: CCAAGCAGAACTGGACTTCCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GGACTCAGTCCGGATCACTCCACAGTTCTCCTCACCTaGGTTGTCCGGCTGATCACTCTCCCAGTTGAGGTA +
Preference number: 6 (lower is better)
Translates to: GLSPDHSTVLLT*VVRLITLPVEV
Trigger: TACCTCAACTGGGAGAGTGATCAGCCGGACAACCCAGGTGAGGAGAACTGTGGAGTGATCCGGACTGAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp CGTGTCCCTTCCCAACTCCCTACCTTATTGAGGAACTaGTTCCAACCGGAGGGGCAGCCTCCTAAGGCTGAA +
Preference number: 6 (lower is better)
Translates to: RVPSQLPTLLRN*FQPEGQPPKAE
Trigger: TTCAGCCTTAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGGTAGGGAGTTGGGAAGGGACACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021038.5
CDS CCA 72 bp GGGTTGAAGTTCATGCCCAACCAGGCACCTCGACTTTaGGCTTCAGCTGTCTGCAGGTGCTCCCAGACAAAC +
Preference number: 6 (lower is better)
Translates to: GLKFMPNQAPRL*ASAVCRCSQTN
Trigger: GTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGGCATGAACTTCAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp TCTCTGCCAGTGCTGGTGCAGCCGTGGAACCACTGGTaGTCGTATTTGAAGGGGATAGTGCACGGCTTTCCG +
Preference number: 6 (lower is better)
Translates to: SLPVLVQPWNHW*SYLKGIVHGFP
Trigger: CGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp CAGATGGTGACACAGTCCTCCAGGCTGTCACGAAAGTaGTTGGGCTCAAAGGGGTGCCAGTGGGTGAAGCTC +
Preference number: 6 (lower is better)
Translates to: QMVTQSSRLSRK*LGSKGCQWVKL
Trigger: GAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTTCGTGACAGCCTGGAGGACTGTGTCACCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp TCATCCCCACTGAGCCAACGGAAGGAGCCAGTACTGTaGAGGTCTTGCAGGGCTGTCCAGAAGTATTCGCCC +
Preference number: 6 (lower is better)
Translates to: SSPLSQRKEPVL*RSCRAVQKYSP
Trigger: GGGCGAATACTTCTGGACAGCCCTGCAAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAGTGGGGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp GGGGTTGAAGTTCATGCCCAACCAGGCACCTCGACTTaGGGCTTCAGCTGTCTGCAGGTGCTCCCAGACAAA +
Preference number: 6 (lower is better)
Translates to: GVEVHAQPGTST*GFSCLQVLPDK
Trigger: TTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGGCATGAACTTCAACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp TCTCTGCCAGTGCTGGTGCAGCCGTGGAACCACTGGTTGTCGTATTaGAAGGGGATAGTGCACGGCTTTCCGTGTGAGTTTCCCTGGATG +
Preference number: 6 (lower is better)
Translates to: SLPVLVQPWNHWLSY*KGIVHGFPCEFPWM
Trigger: CATCCAGGGAAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp CAGCCTCCTAAGGCTGAAGGTGGCAAGTCTTGGGGCTaGGTCTCTCCAGAGCTATTGCTGCGCTTACAGATG +
Preference number: 6 (lower is better)
Translates to: QPPKAEGGKSWG*VSPELLLRLQM
Trigger: CATCTGTAAGCGCAGCAATAGCTCTGGAGAGACTCAGCCCCAAGACTTGCCACCTTCAGCCTTAGGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CTGAGCCAACGGAAGGAGCCAGTACTGTTGAGGTCTTaGAGGGCTGTCCAGAAGTATTCGCCCTCCCAGTTA +
Preference number: 6 (lower is better)
Translates to: LSQRKEPVLLRS*RAVQKYSPSQL
Trigger: TAACTGGGAGGGCGAATACTTCTGGACAGCCCTGCAAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp GGGTCTCTGCGGTTCAGGCCAATCCAAAACCAGTGCTaGTCATGGCTCTCAGGCTCTGACTCACCAAAGATC +
Preference number: 6 (lower is better)
Translates to: GSLRFRPIQNQC*SWLSGSDSPKI
Trigger: GATCTTTGGTGAGTCAGAGCCTGAGAGCCATGAGCAGCACTGGTTTTGGATTGGCCTGAACCGCAGAGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CAGCTTCTGCAGGTTTTGCCCCAGGAAGTCCAGTTCTaGTTGGCTGTGAACGGAGGTCAGATCTGCCTGGAA +
Preference number: 6 (lower is better)
Translates to: QLLQVLPQEVQF*LAVNGGQICLE
Trigger: TTCCAGGCAGATCTGACCTCCGTTCACAGCCAAGCAGAACTGGACTTCCTGGGGCAAAACCTGCAGAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CCCAACCAGGCACCTCGACTTTGGGCTTCAGCTGTCTaGAGGTGCTCCCAGACAAACACATTCTCCATCTCA +
Preference number: 6 (lower is better)
Translates to: PNQAPRLWASAV*RCSQTNTFSIS
Trigger: TGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp AGGTGCCCATCTTCTCTGCCAGTGCTGGTGCAGCCGTaGAACCACTGGTTGTCGTATTTGAAGGGGATAGTG +
Preference number: 6 (lower is better)
Translates to: RCPSSLPVLVQP*NHWLSYLKGIV
Trigger: CACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp TCACATTCCACCTTGACATTGGTCCACCGGTCTGGCTaGATGGGCTCGACCGTAGCGTTGGGTTTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: SHSTLTLVHRSG*MGSTVALGFFL
Trigger: CAAGAAGAAACCCAACGCTACGGTCGAGCCCATCCAGCCAGACCGGTGGACCAATGTCAAGGTGGAATGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp TCCTGGCCCTGGATTCGGAAACACTTATTGAGGAACTaGTTCCAACCGGAGGGGCAGCCTCCTAAGGCTGAA +
Preference number: 6 (lower is better)
Translates to: SWPWIRKHLLRN*FQPEGQPPKAE
Trigger: TTCAGCCTTAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp TGTGCCTCTGACCATTTCACCCTGTCCTGGGGGTCCTaGCCCTGGATTCGGAAACACTTATTGAGGAACTGG +
Preference number: 6 (lower is better)
Translates to: CASDHFTLSWGS*PWIRKHLLRNW
Trigger: CCAGTTCCTCAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp CAGGAGAACTGTGCCTCTGACCATTTCACCCTGTCCTaGGGGTCCTGGCCCTGGATTCGGAAACACTTATTG +
Preference number: 6 (lower is better)
Translates to: QENCASDHFTLS*GSWPWIRKHLL
Trigger: CAATAAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp CTGTCACACTCATACATGCCCAAGGAAACTGTGGTGTaGGTGACTGGCCAGCCTGTACCCAGGCACTGTGTG +
Preference number: 6 (lower is better)
Translates to: LSHSYMPKETVV*VTGQPVPRHCV
Trigger: CACACAGTGCCTGGGTACAGGCTGGCCAGTCACCAACACCACAGTTTCCTTGGGCATGTATGAGTGTGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp ACTGAGCCAACGGAAGGAGCCAGTACTGTTGAGGTCTaGCAGGGCTGTCCAGAAGTATTCGCCCTCCCAGTT +
Preference number: 6 (lower is better)
Translates to: TEPTEGASTVEV*QGCPEVFALPV
Trigger: AACTGGGAGGGCGAATACTTCTGGACAGCCCTGCAAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp TGCCCATCTTCTCTGCCAGTGCTGGTGCAGCCGTGGAACCACTGGTaGTCGTATTTGAAGGGGATAGTGCACGGCTTTCCGTGTGAGTTT +
Preference number: 6 (lower is better)
Translates to: CPSSLPVLVQPWNHW*SYLKGIVHGFPCEF
Trigger: AAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp ACAGCACCTCCATGTGGAAAGAATAGCAATGCTCCCTaGAGGGAATCCAGGACGAGTCAGCCAAGCCCTGAG +
Preference number: 6 (lower is better)
Translates to: TAPPCGKNSNAP*RESRTSQPSPE
Trigger: CTCAGGGCTTGGCTGACTCGTCCTGGATTCCCTTCAGGGAGCATTGCTATTCTTTCCACATGGAGGTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp AGAAGCAGGGACAACTGGTCCCCTAGTGTACGACACTaGCATCGAAGACTCAAGGCCTCTCTGTCACACTCA +
Preference number: 6 (lower is better)
Translates to: RSRDNWSPSVRH*HRRLKASLSHS
Trigger: TGAGTGTGACAGAGAGGCCTTGAGTCTTCGATGGCAGTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CAAGGAACCTCACTTTCATTGGCACAGAGAGGTGTGTaGGGACAGATGAAAGGTGTGGCAGAACAGCTGGGG +
Preference number: 6 (lower is better)
Translates to: QGTSLSLAQRGV*GQMKGVAEQLG
Trigger: CCCCAGCTGTTCTGCCACACCTTTCATCTGTCCGCACACACCTCTCTGTGCCAATGAAAGTGAGGTTCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021038.5
CDS CCA 72 bp TCTTCTCTGCCAGTGCTGGTGCAGCCGTGGAACCACTaGTTGTCGTATTTGAAGGGGATAGTGCACGGCTTT +
Preference number: 6 (lower is better)
Translates to: SSLPVLVQPWNH*LSYLKGIVHGF
Trigger: AAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp CCTCCACGTCTGTACCCAGGCTGGTCTCGATTCCAATaGGTATATATGACTTCATCCCCACTGAGCCAACGG +
Preference number: 6 (lower is better)
Translates to: PPRLYPGWSRFQ*VYMTSSPLSQR
Trigger: CCGTTGGCTCAGTGGGGATGAAGTCATATATACCCATTGGAATCGAGACCAGCCTGGGTACAGACGTGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GCCAGAGCCACACAGCCTCCACGTCTGTACCCAGGCTaGTCTCGATTCCAATGGGTATATATGACTTCATCC +
Preference number: 6 (lower is better)
Translates to: ARATQPPRLYPG*SRFQWVYMTSS
Trigger: GGATGAAGTCATATATACCCATTGGAATCGAGACCAGCCTGGGTACAGACGTGGAGGCTGTGTGGCTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp GTGCTGGTGCAGCCGTGGAACCACTGGTTGTCGTATTaGAAGGGGATAGTGCACGGCTTTCCGTGTGAGTTT +
Preference number: 6 (lower is better)
Translates to: VLVQPWNHWLSY*KGIVHGFPCEF
Trigger: AAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp CTCTCCTGGTGCCCAGTTGGTATAGAGCAGGGGTTCTaGTTCAATCCACTGGAAGTCCCTCTGAGAGGCATG +
Preference number: 6 (lower is better)
Translates to: LSWCPVGIEQGF*FNPLEVPLRGM
Trigger: CATGCCTCTCAGAGGGACTTCCAGTGGATTGAACAAGAACCCCTGCTCTATACCAACTGGGCACCAGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp TTCATCCCCACTGAGCCAACGGAAGGAGCCAGTACTGTTGAGGTCTaGCAGGGCTGTCCAGAAGTATTCGCCCTCCCAGTTATAGATGAG +
Preference number: 6 (lower is better)
Translates to: FIPTEPTEGASTVEV*QGCPEVFALPVIDE
Trigger: CTCATCTATAACTGGGAGGGCGAATACTTCTGGACAGCCCTGCAAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAGTGGGGATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp CATGGCTCTCAGGCTCTGACTCACCAAAGATCTTGTTaGGCATGTGGGCCACAAAGTGCTCCTCCTCATAGC +
Preference number: 6 (lower is better)
Translates to: HGSQALTHQRSC*ACGPQSAPPHS
Trigger: GCTATGAGGAGGAGCACTTTGTGGCCCACATGCTCAACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp AGCAGGGGTTCTTGTTCAATCCACTGGAAGTCCCTCTaGGAGGCATGCAGGCCAATCCAAAGGTCAAAGGTC +
Preference number: 6 (lower is better)
Translates to: SRGSCSIHWKSL*EACRPIQRSKV
Trigger: GACCTTTGACCTTTGGATTGGCCTGCATGCCTCTCAGAGGGACTTCCAGTGGATTGAACAAGAACCCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS GCA 72 bp CAGGCACCTCGACTTTGGGCTTCAGCTGTCTGCAGGTaGTCCCAGACAAACACATTCTCCATCTCATCAAGA +
Preference number: 6 (lower is better)
Translates to: QAPRLWASAVCR*SQTNTFSISSR
Trigger: TCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CCA 72 bp CTGCGGTTCAGGCCAATCCAAAACCAGTGCTGCTCATaGCTCTCAGGCTCTGACTCACCAAAGATCTTGTTG +
Preference number: 6 (lower is better)
Translates to: LRFRPIQNQCCS*LSGSDSPKILL
Trigger: CAACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCATGAGCAGCACTGGTTTTGGATTGGCCTGAACCGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp GAGGCATGCAGGCCAATCCAAAGGTCAAAGGTCACGTaGGGGAGGCTGGCTGTGATAAATGCTTGCTCTAAG +
Preference number: 6 (lower is better)
Translates to: EACRPIQRSKVT*GRLAVINACSK
Trigger: CTTAGAGCAAGCATTTATCACAGCCAGCCTCCCCAACGTGACCTTTGACCTTTGGATTGGCCTGCATGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp TATATGACTTCATCCCCACTGAGCCAACGGAAGGAGCCAGTACTGTaGAGGTCTTGCAGGGCTGTCCAGAAGTATTCGCCCTCCCAGTTA +
Preference number: 6 (lower is better)
Translates to: YMTSSPLSQRKEPVL*RSCRAVQKYSPSQL
Trigger: TAACTGGGAGGGCGAATACTTCTGGACAGCCCTGCAAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAGTGGGGATGAAGTCATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CCTCATAGTAAGGTCGAGCACATAGGTCTTCTTCACTaGCATAGATGTTCCAATGGCCACTGCGGGTCTGGT +
Preference number: 6 (lower is better)
Translates to: PHSKVEHIGLLH*HRCSNGHCGSG
Trigger: ACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACCTATGTGCTCGACCTTACTATGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GCTCCCAGACAAACACATTCTCCATCTCATCAAGAATaGACAGAACCGTCCCACCAGCTTTCTGACAGCGCT +
Preference number: 6 (lower is better)
Translates to: APRQTHSPSHQE*TEPSHQLSDSA
Trigger: AGCGCTGTCAGAAAGCTGGTGGGACGGTTCTGTCCATTCTTGATGAGATGGAGAATGTGTTTGTCTGGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 72 bp CCAATCCATAGCTCCTCCACCTCTTGCTTGATCTGTTaGGTGATGAACTCCAGCTCAGCCATGCTGTGGATG +
Preference number: 6 (lower is better)
Translates to: PIHSSSTSCLIC*VMNSSSAMLWM
Trigger: CATCCACAGCATGGCTGAGCTGGAGTTCATCACCAAACAGATCAAGCAAGAGGTGGAGGAGCTATGGATTGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp CAGTCCTCTTGTCTGGCTGTCATGTATACACACTTCTaGTCCTTGCCAATGGGTCTAGGTTTTCCCGGTGCC +
Preference number: 6 (lower is better)
Translates to: QSSCLAVMYTHF*SLPMGLGFPGA
Trigger: GGCACCGGGAAAACCTAGACCCATTGGCAAGGACAAGAAGTGTGTATACATGACAGCCAGACAAGAGGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp GATGGCAAGAAGCTGTTCTCTTCCACTCTAGGGAGCTaGCAGACAACTCCCATGGTGATGTTGGTACAAGCC +
Preference number: 6 (lower is better)
Translates to: DGKKLFSSTLGS*QTTPMVMLVQA
Trigger: GGCTTGTACCAACATCACCATGGGAGTTGTCTGCAAGCTCCCTAGAGTGGAAGAGAACAGCTTCTTGCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100335.10
CDS CAA 90 bp CCCCAGTCCTCTTGTCTGGCTGTCATGTATACACACTTCTTGTCCTaGCCAATGGGTCTAGGTTTTCCCGGTGCCCAAGAGATGAAGTTT +
Preference number: 6 (lower is better)
Translates to: PQSSCLAVMYTHFLS*PMGLGFPGAQEMKF
Trigger: AAACTTCATCTCTTGGGCACCGGGAAAACCTAGACCCATTGGCAAGGACAAGAAGTGTGTATACATGACAGCCAGACAAGAGGACTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS TCA 72 bp GTCGTATTTGAAGGGGATAGTGCACGGCTTTCCGTGTaGGTTTCCCTGGATGGTGTAGACCTCATAGTAAGG +
Preference number: 6 (lower is better)
Translates to: VVFEGDSARLSV*VSLDGVDLIVR
Trigger: CCTTACTATGAGGTCTACACCATCCAGGGAAACTCACACGGAAAGCCGTGCACTATCCCCTTCAAATACGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS GCA 72 bp CTCACGAGGCTCCCGTCGGACCACTCAAAATTCATCTaGAGTTTCAAATCATTGAGGCCAATCCATAGCTCC +
Preference number: 6 (lower is better)
Translates to: LTRLPSDHSKFI*SFKSLRPIHSS
Trigger: GGAGCTATGGATTGGCCTCAATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGACGGGAGCCTCGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp TCTTGTCTGGCTGTCATGTATACACACTTCTTGTCCTaGCCAATGGGTCTAGGTTTTCCCGGTGCCCAAGAG +
Preference number: 6 (lower is better)
Translates to: SCLAVMYTHFLS*PMGLGFPGAQE
Trigger: CTCTTGGGCACCGGGAAAACCTAGACCCATTGGCAAGGACAAGAAGTGTGTATACATGACAGCCAGACAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 90 bp AGGCTCCCGTCGGACCACTCAAAATTCATCTGCAGTTTCAAATCATaGAGGCCAATCCATAGCTCCTCCACCTCTTGCTTGATCTGTTTG +
Preference number: 6 (lower is better)
Translates to: RLPSDHSKFICSFKS*RPIHSSSTSCLICL
Trigger: CAAACAGATCAAGCAAGAGGTGGAGGAGCTATGGATTGGCCTCAATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGACGGGAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CAA 72 bp TCGGACCACTCAAAATTCATCTGCAGTTTCAAATCATaGAGGCCAATCCATAGCTCCTCCACCTCTTGCTTG +
Preference number: 6 (lower is better)
Translates to: SDHSKFICSFKS*RPIHSSSTSCL
Trigger: CAAGCAAGAGGTGGAGGAGCTATGGATTGGCCTCAATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021038.5
ENSMUST00000100335.10
CDS CCA 72 bp GAAAACTCACCAAAGTATTTAGATAATTTTGCTCCCTaGTGGACCAACACTGAGCCACTTTCCAAGGAACCT +
Preference number: 6 (lower is better)
Translates to: ENSPKYLDNFAP*WTNTEPLSKEP
Trigger: AGGTTCCTTGGAAAGTGGCTCAGTGTTGGTCCACCAGGGAGCAAAATTATCTAAATACTTTGGTGAGTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021038.5