Pregenerated sensors for MR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026471Ensembl transcript IDs: ENSMUST00000027744.10, ENSMUST00000192410.2, ENSMUST00000194612.6
Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGTCCCCGGTTGCATCAGGAGTATGGCCAAGACATGCGGATGCCTaGGAGCAGAGATTGTGGCTCCTAAGAGGGAGAGCTTCCCTCATT | + |
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Preference number: 1 (lower is better) Translates to: QSPVASGVWPRHADA*EQRLWLLRGRASLI Trigger: AATGAGGGAAGCTCTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGCCATACTCCTGATGCAACCGGGGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | CACTGTGTGTGTGGGTCAGGGTGTCTGACCTCAGGTGGACATGCTTaGCAACAGACATCTTCACCCACCTGGACATCTCCAGCCAAACAC | + |
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Preference number: 1 (lower is better) Translates to: HCVCGSGCLTSGGHA*QQTSSPTWTSPAKH Trigger: GTGTTTGGCTGGAGATGTCCAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTCAGACACCCTGACCCACACACACAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR GCA 90 bp | CTTTCACTGTGTGTGTGGGTCAGGGTGTCTGACCTCAGGTGGACATaGTTGGCAACAGACATCTTCACCCACCTGGACATCTCCAGCCAA | + |
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Preference number: 1 (lower is better) Translates to: LSLCVWVRVSDLRWT*LATDIFTHLDISSQ Trigger: TTGGCTGGAGATGTCCAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTCAGACACCCTGACCCACACACACAGTGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR GCA 90 bp | TTTACAGTCCCCGGTTGCATCAGGAGTATGGCCAAGACATGCGGATaGCTGAGAGCAGAGATTGTGGCTCCTAAGAGGGAGAGCTTCCCT | + |
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Preference number: 1 (lower is better) Translates to: FTVPGCIRSMAKTCG*LRAEIVAPKRESFP Trigger: AGGGAAGCTCTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGCCATACTCCTGATGCAACCGGGGACTGTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR GCA 90 bp | CTCAGTTTTACAGTCCCCGGTTGCATCAGGAGTATGGCCAAGACATaGGGATGCCTGAGAGCAGAGATTGTGGCTCCTAAGAGGGAGAGC | + |
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Preference number: 1 (lower is better) Translates to: LSFTVPGCIRSMAKT*GCLRAEIVAPKRES Trigger: GCTCTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGCCATACTCCTGATGCAACCGGGGACTGTAAAACTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR GCA 90 bp | CTAGCAACTGAGCACCGTGTGCAGCCCCCACATGGCTCTTCAAACTaGTTCCCTCCTAACCCACTCCATTCTCCAATTATGGACAAAACC | + |
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Preference number: 1 (lower is better) Translates to: LATEHRVQPPHGSSN*FPPNPLHSPIMDKT Trigger: GGTTTTGTCCATAATTGGAGAATGGAGTGGGTTAGGAGGGAAGCAGTTTGAAGAGCCATGTGGGGGCTGCACACGGTGCTCAGTTGCTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | CTGACCTCAGGTGGACATGCTTGGCAACAGACATCTTCACCCACCTaGACATCTCCAGCCAAACACTATTATTTCATGTTGAAATATTGC | + |
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Preference number: 1 (lower is better) Translates to: LTSGGHAWQQTSSPT*TSPAKHYYFMLKYC Trigger: GCAATATTTCAACATGAAATAATAGTGTTTGGCTGGAGATGTCCAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | TGGTGGGTAGAAGCCATGAGCTCTGCAGAAGAAAGTTGTAATCCCTaGAAAAGTTTCCTTTCGAGTTGTTCTTACCACTGGATGCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: WWVEAMSSAEESCNP*KSFLSSCSYHWMLC Trigger: ACAGAGCATCCAGTGGTAAGAACAACTCGAAAGGAAACTTTTCCAGGGATTACAACTTTCTTCTGCAGAGCTCATGGCTTCTACCCACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | GGCAATTTCTTCCCCATTTTTCATCCATGTCATGGAAATTTCTGGTaGGTAGAAGCCATGAGCTCTGCAGAAGAAAGTTGTAATCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: GNFFPIFHPCHGNFW*VEAMSSAEESCNPW Trigger: CCAGGGATTACAACTTTCTTCTGCAGAGCTCATGGCTTCTACCCACCAGAAATTTCCATGACATGGATGAAAAATGGGGAAGAAATTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | TTGGGCAATTTCTTCCCCATTTTTCATCCATGTCATGGAAATTTCTaGTGGGTAGAAGCCATGAGCTCTGCAGAAGAAAGTTGTAATCCC | + |
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Preference number: 1 (lower is better) Translates to: LGNFFPIFHPCHGNF*WVEAMSSAEESCNP Trigger: GGGATTACAACTTTCTTCTGCAGAGCTCATGGCTTCTACCCACCAGAAATTTCCATGACATGGATGAAAAATGGGGAAGAAATTGCCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | GCTAGCCCCAAATGTAAAATCTACCTGCTTCAGCTTCCTGAGTACTaGGCTTCTAAGATTCCCATCACACTCAGCTTGATAAATTATTGT | + |
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Preference number: 1 (lower is better) Translates to: ASPKCKIYLLQLPEY*ASKIPITLSLINYC Trigger: ACAATAATTTATCAAGCTGAGTGTGATGGGAATCTTAGAAGCCCAGTACTCAGGAAGCTGAAGCAGGTAGATTTTACATTTGGGGCTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR CCA 90 bp | GTAGTGCAGTTCCCTGGAAATATTCTAAATGTTCCATTTAGAATATaGCATCACACTGTTCATAGACCTCGGTTACCGAACATCTATCAT | + |
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Preference number: 1 (lower is better) Translates to: VVQFPGNILNVPFRI*HHTVHRPRLPNIYH Trigger: ATGATAGATGTTCGGTAACCGAGGTCTATGAACAGTGTGATGCCATATTCTAAATGGAACATTTAGAATATTTCCAGGGAACTGCACTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR CAA 90 bp | TCACTGTGTGTGTGGGTCAGGGTGTCTGACCTCAGGTGGACATGCTaGGCAACAGACATCTTCACCCACCTGGACATCTCCAGCCAAACA | + |
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Preference number: 2 (lower is better) Translates to: SLCVWVRVSDLRWTC*ATDIFTHLDISSQT Trigger: TGTTTGGCTGGAGATGTCCAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTCAGACACCCTGACCCACACACACAGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGCACCGTGTGCAGCCCCCACATGGCTCTTCAAACTGCTTCCCTCCTAACCAGCTTCCTGAGTACTaGGCTTCTAAGATTCCCATC | + |
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Preference number: 2 (lower is better) Translates to: TEHRVQPPHGSSNCFPPNQLPEY*ASKIPI Trigger: GATGGGAATCTTAGAAGCCCAGTACTCAGGAAGCTG...GTTAGGAGGGAAGCAGTTTGAAGAGCCATGTGGGGGCTGCACACGGTGCTCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | CAGACAAACATGCAATATTCCTTGCTTTCTGACAGAGCCACCATGAACTGGATATCGAAGGATGTCCCCTaGTTCCCGAGGGGCCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: QTNMQYSLLSDRATMNWISKDVP*FPRGLQ Trigger: CTGGAGGCCCCTCGGGAATCAGGGGACATCCTTCGA...TATCCAGTTCATGGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGTTTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | TTCCCGAGGGGCCTCCAGAACCATTTGGCGACCACAGTGCTCCACATGACAAGATCTCAGGAGAGAAAATaGACAAGAAAGGCTGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: FPRGLQNHLATTVLHMTRSQERK*TRKAVL Trigger: CAAAACAGCCTTTCTTGTTCATTTTCTCTCCTGAGA...TCTTGTCATGTGGAGCACTGTGGTCGCCAAATGGTTCTGGAGGCCCCTCGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | AGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAATGATTGCCAAGACATGCGGATaGCTGAGAGCAGAGATTGTG | + |
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Preference number: 2 (lower is better) Translates to: SESRSAVPWEGTICLVMIAKTCG*LRAEIV Trigger: CACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGC...AATCATTACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCTAGACTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | ATTGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTACGTCCACTCAAAGGCTaGTGTAGAAACTTGCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: IASESRSAVPWEGTICLVRPLKG*CRNLLA Trigger: AGCCAGCAAGTTTCTACAGCAGCCTTTGAGTGGACG...TACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCTAGACTCACTTGCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGCACCGTGTGCAGCCCCCACATGGCTCTTCAAACTGCTTCCCTCCTAACTTCACTTGGGTGGGTTaGTACATGACTTCTTTTAGT | + |
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Preference number: 2 (lower is better) Translates to: TEHRVQPPHGSSNCFPPNFTWVG*YMTSFS Trigger: ACTAAAAGAAGTCATGTACCAACCCACCCAAGTGAA...GTTAGGAGGGAAGCAGTTTGAAGAGCCATGTGGGGGCTGCACACGGTGCTCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | AATTCTCTGCCACTGAGCTACACCCTAAACCCCCAAAGGTTCAATTCTAACTCCCTTTCACTGTGTGTGTaGGTCAGGGTGTCTGACCTC | + |
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Preference number: 2 (lower is better) Translates to: NSLPLSYTLNPQRFNSNSLSLCV*VRVSDL Trigger: GAGGTCAGACACCCTGACCCACACACACAGTGAAAG...GGAGTTAGAATTGAACCTTTGGGGGTTTAGGGTGTAGCTCAGTGGCAGAGAATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCGTCCACTCAAAGGCTGCTGTAGAAACTTGCTGGCTATTTTCATGGGTTGGAGTTGCTTGCGGCTCTaGTACTCTGTGATCTACTTG | + |
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Preference number: 2 (lower is better) Translates to: TRPLKGCCRNLLAIFMGWSCLRL*YSVIYL Trigger: CAAGTAGATCACAGAGTATCAGAGCCGCAAGCAACT...CCAACCCATGAAAATAGCCAGCAAGTTTCTACAGCAGCCTTTGAGTGGACGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | AATTCTCTGCCACTGAGCTACACCCTAAACCCCCAAAGGTTCAATTCTAACTCCCCTCCCCTTGGGCCATaGTATGTATATAGTGACTCG | + |
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Preference number: 2 (lower is better) Translates to: NSLPLSYTLNPQRFNSNSPPLGP*YVYSDS Trigger: CGAGTCACTATATACATATCATGGCCCAAGGGGAGG...GGAGTTAGAATTGAACCTTTGGGGGTTTAGGGTGTAGCTCAGTGGCAGAGAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | AATTCTCTGCCACTGAGCTACACCCTAAACCCCCAAAGGTTCAATTCTAACTCCGACCTCAGGTGGACATaGTTGGCAACAGACATCTTC | + |
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Preference number: 2 (lower is better) Translates to: NSLPLSYTLNPQRFNSNSDLRWT*LATDIF Trigger: GAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTC...GGAGTTAGAATTGAACCTTTGGGGGTTTAGGGTGTAGCTCAGTGGCAGAGAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGAGTGAAGGCCAGGTTGGCCTCCCATaGTTGCTTGGTGATGTGAGC | + |
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Preference number: 2 (lower is better) Translates to: KGCFVVEWGNLHIMLSEGQVGLP*LLGDVS Trigger: GCTCACATCACCAAGCAAGCATGGGAGGCCAACCTG...GCCTTCACTCAACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | AGTTGTAATCCCTGGAAAAGTTTCCTTTCGAGTTGTTCTTACCACTGGATGCTCCAGGTTGGCCTCCCATaGTTGCTTGGTGATGTGAGC | + |
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Preference number: 2 (lower is better) Translates to: SCNPWKSFLSSCSYHWMLQVGLP*LLGDVS Trigger: GCTCACATCACCAAGCAAGCATGGGAGGCCAACCTG...GAGCATCCAGTGGTAAGAACAACTCGAAAGGAAACTTTTCCAGGGATTACAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | TTCACTTGGGTGGGTTGGTACATGACTTCTTTTAGTTCTTGTGACCTTCTCCAGCCCATGCTTGCTTGGTaGTGTGAGCCACATAATCCA | + |
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Preference number: 2 (lower is better) Translates to: FTWVGWYMTSFSSCDLLQPMLAW*CEPHNP Trigger: TGGATTATGTGGCTCACATCACCAAGCAAGCATGGG...CTGGAGAAGGTCACAAGAACTAAAAGAAGTCATGTACCAACCCACCCAAGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | ACCCCCAAAGGTTCAATTCTAACTCCTGTCTTTTCTGTACTGGTTCAGTCTCCAGACCTCAGGTGGACATaGTTGGCAACAGACATCTTC | + |
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Preference number: 2 (lower is better) Translates to: TPKGSILTPVFSVLVQSPDLRWT*LATDIF Trigger: GAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTC...TGGAGACTGAACCAGTACAGAAAAGACAGGAGTTAGAATTGAACCTTTGGGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | ACCCCCAAAGGTTCAATTCTAACTCCTGTCTTTTCTGTACTGGTTCAGTCTCCAACATCTTCACCCACCTaGACATCTCCAGCCAAACAC | + |
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Preference number: 2 (lower is better) Translates to: TPKGSILTPVFSVLVQSPTSSPT*TSPAKH Trigger: GTGTTTGGCTGGAGATGTCCAGGTGGGTGAAGATGT...TGGAGACTGAACCAGTACAGAAAAGACAGGAGTTAGAATTGAACCTTTGGGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAATGATTGTTTTAGTTACTGGAGAAACCCTGTaGTGCTGCCATCTTCTAGCA | + |
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Preference number: 2 (lower is better) Translates to: RSAVPWEGTICLVMIVLVTGETL*CCHLLA Trigger: TGCTAGAAGATGGCAGCACCACAGGGTTTCTCCAGT...AACTAAAACAATCATTACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR CAA 90 bp | GGAAGTCATTGCCATAAATGTAGCCAGACAAACATGCAATATTCCTaGCTTTCTGACAGAGCCACCATGAACTGGATACTTCTGCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GSHCHKCSQTNMQYS*LSDRATMNWILLPP Trigger: GGGAGGCAGAAGTATCCAGTTCATGGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGTTTGTCTGGCTACATTTATGGCAATGACTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | TTCACTTGGGTGGGTTGGTACATGACTTCTTTTAGTTCTTGTGACCTTCTCCAGAGTTGCTTGCGGCTCTaGTACTCTGTGATCTACTTG | + |
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Preference number: 2 (lower is better) Translates to: FTWVGWYMTSFSSCDLLQSCLRL*YSVIYL Trigger: CAAGTAGATCACAGAGTATCAGAGCCGCAAGCAACT...CTGGAGAAGGTCACAAGAACTAAAAGAAGTCATGTACCAACCCACCCAAGTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | ACAAACATGCAATATTCCTTGCTTTCTGACAGAGCCACCATGAACTGGATACTTCATCTCCTGCTTAGGTaGGAAAGTTGCTTGCGGCTC | + |
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Preference number: 2 (lower is better) Translates to: TNMQYSLLSDRATMNWILHLLLR*ESCLRL Trigger: GAGCCGCAAGCAACTTTCTCACCTAAGCAGGAGATG...AAGTATCCAGTTCATGGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGTTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | GAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGAGCATCTCCTGCTTAGGTaGGAAAGTTGCTTGCGGCTC | + |
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Preference number: 2 (lower is better) Translates to: EQERLFCSRMGELAHNVEHLLLR*ESCLRL Trigger: GAGCCGCAAGCAACTTTCTCACCTAAGCAGGAGATG...CTCAACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR TCA 90 bp | TTTCGAGTTGTTCTTACCACTGGATGCTCTGTTCTTTCTAGGGTATCTCTTCCACCCATGCTTGCTTGGTaGTGTGAGCCACATAATCCA | + |
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Preference number: 2 (lower is better) Translates to: FRVVLTTGCSVLSRVSLPPMLAW*CEPHNP Trigger: TGGATTATGTGGCTCACATCACCAAGCAAGCATGGG...TGGAAGAGATACCCTAGAAAGAACAGAGCATCCAGTGGTAAGAACAACTCGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGAAAAGTTTCCTTTCGAGTTGTTCTTACCACTGGATGCTCTGTTCTTTCTAGCCAAGACATGCGGATaGCTGAGAGCAGAGATTGTG | + |
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Preference number: 2 (lower is better) Translates to: LEKFPFELFLPLDALFFLAKTCG*LRAEIV Trigger: CACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGC...TAGAAAGAACAGAGCATCCAGTGGTAAGAACAACTCGAAAGGAAACTTTTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | TGTAGAAACTTGCTGGCTATTTTCATGGGTTGGCTCAACCCTACTTATAGATTCGCCAAGACATGCGGATaGCTGAGAGCAGAGATTGTG | + |
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Preference number: 2 (lower is better) Translates to: CRNLLAIFMGWLNPTYRFAKTCG*LRAEIV Trigger: CACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGC...GAATCTATAAGTAGGGTTGAGCCAACCCATGAAAATAGCCAGCAAGTTTCTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | AGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAATGATTGCTGCTGTAGAAACTTaGTGGCTATTTTCATGGGTT | + |
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Preference number: 2 (lower is better) Translates to: SESRSAVPWEGTICLVMIAAVET*WLFSWV Trigger: AACCCATGAAAATAGCCAGCAAGTTTCTACAGCAGC...AATCATTACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCTAGACTCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | ATTGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAAGCAAAGGAAGTCATTaGCATAAATGTAGCCAGACA | + |
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Preference number: 2 (lower is better) Translates to: IASESRSAVPWEGTICLVSKGSH*HKCSQT Trigger: TGTCTGGCTACATTTATGGCAATGACTTCCTTTGCT...TACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCTAGACTCACTTGCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | TGCCTGAGAGCAGAGATTGTGGCTCCTAAGAGGGAGAGCTTCCCTCATTCACTTTGTTTTGTAGTAGAATaGGGGAACTTGCACATAATG | + |
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Preference number: 2 (lower is better) Translates to: CLRAEIVAPKRESFPHSLCFVVE*GNLHIM Trigger: CATTATGTGCAAGTTCCCCCATTCTACTACAAAACA...AAGTGAATGAGGGAAGCTCTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | TGCCTGAGAGCAGAGATTGTGGCTCCTAAGAGGGAGAGCTTCCCTCATTCACTTTTTTCATCCATGTCATaGAAATTTCTGGTGGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: CLRAEIVAPKRESFPHSLFSSMS*KFLVGR Trigger: TCTACCCACCAGAAATTTCCATGACATGGATGAAAA...AAGTGAATGAGGGAAGCTCTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCA 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | TGCTTCCCTCCTAACCCACTCCATTCTCCAATTATGGACAAAACCTTGGCCTGCGGTAGTGCAGTTCCCTaGAAATATTCTAAATGTTCC | + |
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Preference number: 2 (lower is better) Translates to: CFPPNPLHSPIMDKTLACGSAVP*KYSKCS Trigger: GGAACATTTAGAATATTTCCAGGGAACTGCACTACC...GCAGGCCAAGGTTTTGTCCATAATTGGAGAATGGAGTGGGTTAGGAGGGAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
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| 3UTR-3UTR GCA 90 bp | GAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGAGTGGTATTGCAACTCATaGAGGTTGGCCTCCCATGCT | + |
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Preference number: 2 (lower is better) Translates to: EQERLFCSRMGELAHNVEWYCNS*RLASHA Trigger: AGCATGGGAGGCCAACCTGCATGAGTTGCAATACCA...CTCAACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | GGTCAAAGTTCTTACATGGTAAACATTCTCAGGAGAGAAAATGAACAAGAAAGGGCAACTCATGCAGGTTaGCCTCCCATGCTTGCTTGG | + |
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Preference number: 2 (lower is better) Translates to: GQSSYMVNILRRENEQERATHAG*PPMLAW Trigger: CCAAGCAAGCATGGGAGGCCAACCTGCATGAGTTGC...CCTTTCTTGTTCATTTTCTCTCCTGAGAATGTTTACCATGTAAGAACTTTGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
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| 3UTR-3UTR CCA 90 bp | AATGAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGCAACTCATGCAGGTTaGCCTCCCATGCTTGCTTGG | + |
|
Preference number: 2 (lower is better) Translates to: NEQERLFCSRMGELAHNVATHAG*PPMLAW Trigger: CCAAGCAAGCATGGGAGGCCAACCTGCATGAGTTGC...AACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CCA 90 bp | AGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAATGATTGTTTTAGTTCATGGAAATTTCTGGTaGGTAGAAGCCATGAGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: RSAVPWEGTICLVMIVLVHGNFW*VEAMSS Trigger: AGAGCTCATGGCTTCTACCCACCAGAAATTTCCATG...AACTAAAACAATCATTACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR-3UTR GCA 90 bp | AATTCTCTGCCACTGAGCTACACCCTAAACCCCCAAAGGTTCAATTCTAACTCCTTAGAAGACATCTCCTaGTTAGGTGAGAAAGTTGCT | + |
|
Preference number: 2 (lower is better) Translates to: NSLPLSYTLNPQRFNSNSLEDIS*LGEKVA Trigger: AGCAACTTTCTCACCTAAGCAGGAGATGTCTTCTAA...GGAGTTAGAATTGAACCTTTGGGGGTTTAGGGTGTAGCTCAGTGGCAGAGAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR-3UTR GCA 90 bp | AAAGTGCTGAAGACTGACCTCAGGGCCTCATACATGCTAAGAAAATTCTCTGCCTTAGAAGACATCTCCTaGTTAGGTGAGAAAGTTGCT | + |
|
Preference number: 2 (lower is better) Translates to: KVLKTDLRASYMLRKFSALEDIS*LGEKVA Trigger: AGCAACTTTCTCACCTAAGCAGGAGATGTCTTCTAA...GGCAGAGAATTTTCTTAGCATGTATGAGGCCCTGAGGTCAGTCTTCAGCACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CCA 90 bp | TGTAGAAACTTGCTGGCTATTTTCATGGGTTGGCTCAACCCTACTTATAGATTCCTTCCCTCATTCACTTaGGTGGGTTGGTACATGACT | + |
|
Preference number: 2 (lower is better) Translates to: CRNLLAIFMGWLNPTYRFLPSFT*VGWYMT Trigger: AGTCATGTACCAACCCACCCAAGTGAATGAGGGAAG...GAATCTATAAGTAGGGTTGAGCCAACCCATGAAAATAGCCAGCAAGTTTCTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR CAA 90 bp | TGCTTCCCTCCTAACCCACTCCATTCTCCAATTATGGACAAAACCTaGGCCTGCACACGCTACAATGAAAAACAGATAATAAATGTAGAG | + |
|
Preference number: 2 (lower is better) Translates to: CFPPNPLHSPIMDKT*ACTRYNEKQIINVE Trigger: CTCTACATTTATTATCTGTTTTTCATTGTAGCGTGTGCAGGCCAAGGTTTTGTCCATAATTGGAGAATGGAGTGGGTTAGGAGGGAAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR-3UTR GCA 90 bp | GGTCAAAGTTCTTACATGGTAAACATTCTCAGGAGAGAAAATGAACAAGAAAGGTGGTATTGCAACTCATaGAGGTTGGCCTCCCATGCT | + |
|
Preference number: 2 (lower is better) Translates to: GQSSYMVNILRRENEQERWYCNS*RLASHA Trigger: AGCATGGGAGGCCAACCTGCATGAGTTGCAATACCA...CCTTTCTTGTTCATTTTCTCTCCTGAGAATGTTTACCATGTAAGAACTTTGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR GCA 90 bp | AAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGAGTGAAGGCGTTCTTACCACTGGATaGTCTGTTCTTTCTAGGGTA | + |
|
Preference number: 2 (lower is better) Translates to: KGCFVVEWGNLHIMLSEGVLTTG*SVLSRV Trigger: TACCCTAGAAAGAACAGAGCATCCAGTGGTAAGAAC...GCCTTCACTCAACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CCA 90 bp | AATTCTCTGCCACTGAGCTACACCCTAAACCCCCAAAGGTTCAATTCTAACTCCTGTTTTGTAGTAGAATaGGGGAACTTGCACATAATG | + |
|
Preference number: 2 (lower is better) Translates to: NSLPLSYTLNPQRFNSNSCFVVE*GNLHIM Trigger: CATTATGTGCAAGTTCCCCCATTCTACTACAAAACA...GGAGTTAGAATTGAACCTTTGGGGGTTTAGGGTGTAGCTCAGTGGCAGAGAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR-3UTR GCA 90 bp | GAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGAGGTTCTTACCACTGGATaGTCTGTTCTTTCTAGGGTA | + |
|
Preference number: 2 (lower is better) Translates to: EQERLFCSRMGELAHNVEVLTTG*SVLSRV Trigger: TACCCTAGAAAGAACAGAGCATCCAGTGGTAAGAAC...CTCAACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CCA 90 bp | AATGAAGAAAAATTTGTAGCTCCTATCTTCCTGTCACAAGTGCTCAGTTTTACAACTGGAGAAACCCTGTaGTGCTGCCATCTTCTAGCA | + |
|
Preference number: 2 (lower is better) Translates to: NEEKFVAPIFLSQVLSFTTGETL*CCHLLA Trigger: TGCTAGAAGATGGCAGCACCACAGGGTTTCTCCAGT...TGTAAAACTGAGCACTTGTGACAGGAAGATAGGAGCTACAAATTTTTCTTCATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR TCA 90 bp | GGTCAAAGTTCTTACATGGTAAACATTCTCAGGAGAGAAAATGAACAAGAAAGGGGCTCTGATACTCTGTaGTCTACTTGTAAATCACTA | + |
|
Preference number: 2 (lower is better) Translates to: GQSSYMVNILRRENEQERGSDTL*STCKSL Trigger: TAGTGATTTACAAGTAGATCACAGAGTATCAGAGCC...CCTTTCTTGTTCATTTTCTCTCCTGAGAATGTTTACCATGTAAGAACTTTGACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR TCA 90 bp | AATGAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTTCTCAGGAGAGAAAATaGACAAGAAAGGCTGTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: NEQERLFCSRMGELAHNVSQERK*TRKAVL Trigger: CAAAACAGCCTTTCTTGTTCATTTTCTCTCCTGAGA...AACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTCATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR GCA 90 bp | AATGAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTAATGTAAAATCTACCTaGTTCAGCTTCCTGAGTACT | + |
|
Preference number: 2 (lower is better) Translates to: NEQERLFCSRMGELAHNVNVKST*FSFLST Trigger: AGTACTCAGGAAGCTGAAGCAGGTAGATTTTACATT...AACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTCATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CCA 90 bp | GGTCAAAGTTCTTACATGGTAAACATTCTCAGGAGAGAAAATGAACAAGAAAGGTGTTTTGTAGTAGAATaGGGGAACTTGCACATAATG | + |
|
Preference number: 2 (lower is better) Translates to: GQSSYMVNILRRENEQERCFVVE*GNLHIM Trigger: CATTATGTGCAAGTTCCCCCATTCTACTACAAAACA...CCTTTCTTGTTCATTTTCTCTCCTGAGAATGTTTACCATGTAAGAACTTTGACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR GCA 72 bp | CCCGGTTGCATCAGGAGTATGGCCAAGACATGCGGATaGCTGAGAGCAGAGATTGTGGCTCCTAAGAGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: PGCIRSMAKTCG*LRAEIVAPKRE Trigger: CTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGCCATACTCCTGATGCAACCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR GCA 72 bp | TGTGTGTGGGTCAGGGTGTCTGACCTCAGGTGGACATaGTTGGCAACAGACATCTTCACCCACCTGGACATC | + |
|
Preference number: 3 (lower is better) Translates to: CVWVRVSDLRWT*LATDIFTHLDI Trigger: GATGTCCAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTCAGACACCCTGACCCACACACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR CCA 72 bp | TCACTGTGTGTGTGGGTCAGGGTGTCTGACCTCAGGTaGACATGCTTGGCAACAGACATCTTCACCCACCTG | + |
|
Preference number: 3 (lower is better) Translates to: SLCVWVRVSDLR*TCLATDIFTHL Trigger: CAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACCTGAGGTCAGACACCCTGACCCACACACACAGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | GTTGCATCAGGAGTATGGCCAAGACATGCGGATGCCTaGGAGCAGAGATTGTGGCTCCTAAGAGGGAGAGCT | + |
|
Preference number: 3 (lower is better) Translates to: VASGVWPRHADA*EQRLWLLRGRA Trigger: AGCTCTCCCTCTTAGGAGCCACAATCTCTGCTCTCAGGCATCCGCATGTCTTGGCCATACTCCTGATGCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR GCA 72 bp | GAGCACCGTGTGCAGCCCCCACATGGCTCTTCAAACTaGTTCCCTCCTAACCCACTCCATTCTCCAATTATG | + |
|
Preference number: 3 (lower is better) Translates to: EHRVQPPHGSSN*FPPNPLHSPIM Trigger: CATAATTGGAGAATGGAGTGGGTTAGGAGGGAAGCAGTTTGAAGAGCCATGTGGGGGCTGCACACGGTGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | ACTCGTCCACTCAAAGGCTGCTGTAGAAACTTGCTGGCTATTTTCATGGGTTGGGTTGGCCTCCCATGCTaGCTTGGTGATGTGAGCCAC | + |
|
Preference number: 3 (lower is better) Translates to: TRPLKGCCRNLLAIFMGWVGLPC*LGDVSH Trigger: GTGGCTCACATCACCAAGCAAGCATGGGAGGCCAAC...CCAACCCATGAAAATAGCCAGCAAGTTTCTACAGCAGCCTTTGAGTGGACGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TTCACTTGGGTGGGTTGGTACATGACTTCTTTTAGTTCTTGTGACCTTCTCCAGGTTGGCCTCCCATGCTaGCTTGGTGATGTGAGCCAC | + |
|
Preference number: 3 (lower is better) Translates to: FTWVGWYMTSFSSCDLLQVGLPC*LGDVSH Trigger: GTGGCTCACATCACCAAGCAAGCATGGGAGGCCAAC...CTGGAGAAGGTCACAAGAACTAAAAGAAGTCATGTACCAACCCACCCAAGTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TCTTGTGACCTTCTCCAGATCAGAACACCAACTCCAGCCAGGGCGATGATGAGATCCGTAATCCACTTCTaGGGCAATTTCTTCCCCATT | + |
|
Preference number: 3 (lower is better) Translates to: SCDLLQIRTPTPARAMMRSVIHF*GNFFPI Trigger: AATGGGGAAGAAATTGCCCAAGAAGTGGATTACGGA...TCTCATCATCGCCCTGGCTGGAGTTGGTGTTCTGATCTGGAGAAGGTCACAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | ACCATGAACTGGATACTTCTGCCTCCCCTTGGGCCATaGTATGTATATAGTGACTCGTCCACTCAAAGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: TMNWILLPPLGP*YVYSDSSTQRL Trigger: CAGCCTTTGAGTGGACGAGTCACTATATACATATCATGGCCCAAGGGGAGGCAGAAGTATCCAGTTCATGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | ACATGCAATATTCCTTGCTTTCTGACAGAGCCACCATaGACTGGATACTTCTGCCTCCCCTTGGGCCATGAT | + |
|
Preference number: 3 (lower is better) Translates to: TCNIPCFLTEPP*TGYFCLPLGHD Trigger: ATCATGGCCCAAGGGGAGGCAGAAGTATCCAGTTCATGGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TCTCAGGCTGGCCAAGTATCTCAAGTTTCCTCTGTAGCTGAGGGTGACTTTGAAGGCTGCTGTAGAAACTaGCTGGCTATTTTCATGGGT | + |
|
Preference number: 3 (lower is better) Translates to: SQAGQVSQVSSVAEGDFEGCCRN*LAIFMG Trigger: ACCCATGAAAATAGCCAGCAAGTTTCTACAGCAGCC...TTCAAAGTCACCCTCAGCTACAGAGGAAACTTGAGATACTTGGCCAGCCTGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TGCTTCCCTCCTAACCCACTCCATTCTCCAATTATGGACAAAACCTTGGCCTGCAACATGCAATATTCCTaGCTTTCTGACAGAGCCACC | + |
|
Preference number: 3 (lower is better) Translates to: CFPPNPLHSPIMDKTLACNMQYS*LSDRAT Trigger: GGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGTT...GCAGGCCAAGGTTTTGTCCATAATTGGAGAATGGAGTGGGTTAGGAGGGAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR CCA 72 bp | GGTGGACATGCTTGGCAACAGACATCTTCACCCACCTaGACATCTCCAGCCAAACACTATTATTTCATGTTG | + |
|
Preference number: 3 (lower is better) Translates to: GGHAWQQTSSPT*TSPAKHYYFML Trigger: CAACATGAAATAATAGTGTTTGGCTGGAGATGTCCAGGTGGGTGAAGATGTCTGTTGCCAAGCATGTCCACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR CCA 72 bp | ACTGCTTCCCTCCTAACCCACTCCATTCTCCAATTATaGACAAAACCTTGGCCTGCACACGCTACAATGAAA | + |
|
Preference number: 3 (lower is better) Translates to: TASLLTHSILQL*TKPWPAHATMK Trigger: TTTCATTGTAGCGTGTGCAGGCCAAGGTTTTGTCCATAATTGGAGAATGGAGTGGGTTAGGAGGGAAGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TTTCATGTTGAAATATTGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGATACTTCTGCCTCCCCTaGGGCCATGATATGTATATA | + |
|
Preference number: 3 (lower is better) Translates to: FHVEILQVSLGLPFHGRGYFCLP*GHDMYI Trigger: TATATACATATCATGGCCCAAGGGGAGGCAGAAGTA...TCCCCTCCCATGGAACGGCAGACCTAGACTCACTTGCAATATTTCAACATGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TTTCATGTTGAAATATTGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGAGTTCTGTTAAGTGTGTaGCTGTTGTTGTTGTTTTGG | + |
|
Preference number: 3 (lower is better) Translates to: FHVEILQVSLGLPFHGRGVLLSV*LLLLFW Trigger: CCAAAACAACAACAACAGCAACACACTTAACAGAAC...TCCCCTCCCATGGAACGGCAGACCTAGACTCACTTGCAATATTTCAACATGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | CCTGGACATCTCCAGCCAAACACTATTATTTCATGTTaGAATATTGCAAGTGAGTCTAGGTCTGCCGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: PGHLQPNTIISC*NIASESRSAVP Trigger: TGGAACGGCAGACCTAGACTCACTTGCAATATTTCAACATGAAATAATAGTGTTTGGCTGGAGATGTCCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR GCA 72 bp | CATGATATGTATATAGTGACTCGTCCACTCAAAGGCTaGTGTAGAAACTTGCTGGCTATTTTCATGGGTTGG | + |
|
Preference number: 3 (lower is better) Translates to: HDMYIVTRPLKG*CRNLLAIFMGW Trigger: CCAACCCATGAAAATAGCCAGCAAGTTTCTACAGCAGCCTTTGAGTGGACGAGTCACTATATACATATCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR CCA 72 bp | TTCCCCATTTTTCATCCATGTCATGGAAATTTCTGGTaGGTAGAAGCCATGAGCTCTGCAGAAGAAAGTTGT | + |
|
Preference number: 3 (lower is better) Translates to: FPIFHPCHGNFW*VEAMSSAEESC Trigger: ACAACTTTCTTCTGCAGAGCTCATGGCTTCTACCCACCAGAAATTTCCATGACATGGATGAAAAATGGGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TTTCATGTTGAAATATTGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGACAATATTGGGAAGTATaGGGTCATGAGACAAACTAT | + |
|
Preference number: 3 (lower is better) Translates to: FHVEILQVSLGLPFHGRGQYWEV*GHETNY Trigger: ATAGTTTGTCTCATGACCCAATACTTCCCAATATTG...TCCCCTCCCATGGAACGGCAGACCTAGACTCACTTGCAATATTTCAACATGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR GCA 72 bp | GGAAAAGTTTCCTTTCGAGTTGTTCTTACCACTGGATaGTCTGTTCTTTCTAGGGTATCTCTTCCATATTCC | + |
|
Preference number: 3 (lower is better) Translates to: GKVSFRVVLTTG*SVLSRVSLPYS Trigger: GGAATATGGAAGAGATACCCTAGAAAGAACAGAGCATCCAGTGGTAAGAACAACTCGAAAGGAAACTTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | TTCACTTGGGTGGGTTGGTACATGACTTCTTTTAGTTCTTGTGACCTTCTCCAGCAATATTGGGAAGTATaGGGTCATGAGACAAACTAT | + |
|
Preference number: 3 (lower is better) Translates to: FTWVGWYMTSFSSCDLLQQYWEV*GHETNY Trigger: ATAGTTTGTCTCATGACCCAATACTTCCCAATATTG...CTGGAGAAGGTCACAAGAACTAAAAGAAGTCATGTACCAACCCACCCAAGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | AATGAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTAACATGCAATATTCCTaGCTTTCTGACAGAGCCACC | + |
|
Preference number: 3 (lower is better) Translates to: NEQERLFCSRMGELAHNVNMQYS*LSDRAT Trigger: GGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGTT...AACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | GACTGTGATAAAGGAGTCTATCAAGAGCCTAAAAGTTaGCAGCTCTTCTGGAGCCAAAGAATGAAGAAAAAT | + |
|
Preference number: 3 (lower is better) Translates to: DCDKGVYQEPKS*QLFWSQRMKKN Trigger: ATTTTTCTTCATTCTTTGGCTCCAGAAGAGCTGTCAACTTTTAGGCTCTTGATAGACTCCTTTATCACAGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR GCA 72 bp | CCACTCCATTCTCCAATTATGGACAAAACCTTGGCCTaGACACGCTACAATGAAAAACAGATAATAAATGTA | + |
|
Preference number: 3 (lower is better) Translates to: PLHSPIMDKTLA*TRYNEKQIINV Trigger: TACATTTATTATCTGTTTTTCATTGTAGCGTGTGCAGGCCAAGGTTTTGTCCATAATTGGAGAATGGAGTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | GCTCTGATACTCTGTGATCTACTTGTAAATCACTATTaGGAACTACAATATTGGGAAGTATTGGGTCATGAG | + |
|
Preference number: 3 (lower is better) Translates to: ALILCDLLVNHY*ELQYWEVLGHE Trigger: CTCATGACCCAATACTTCCCAATATTGTAGTTCTCAATAGTGATTTACAAGTAGATCACAGAGTATCAGAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR TCA 72 bp | TTAGGTGAGAAAGTTGCTTGCGGCTCTGATACTCTGTaGTCTACTTGTAAATCACTATTGAGAACTACAATA | + |
|
Preference number: 3 (lower is better) Translates to: LGEKVACGSDTL*STCKSLLRTTI Trigger: TATTGTAGTTCTCAATAGTGATTTACAAGTAGATCACAGAGTATCAGAGCCGCAAGCAACTTTCTCACCTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027744.10 ENSMUST00000192410.2 ENSMUST00000194612.6 |
||
| 3UTR-3UTR CAA 90 bp | CATAGTGGTCAAAGTTCTTACATGGTAAACATTCTCAGGAGAGAAAATGAACAACAATATTGGGAAGTATaGGGTCATGAGACAAACTAT | + |
|
Preference number: 3 (lower is better) Translates to: HSGQSSYMVNILRRENEQQYWEV*GHETNY Trigger: ATAGTTTGTCTCATGACCCAATACTTCCCAATATTG...TTGTTCATTTTCTCTCCTGAGAATGTTTACCATGTAAGAACTTTGACCACTATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
||
| CDS-3UTR TCA 90 bp | TCCCCTGATTCCCGAGGGGCCTCCAGAACCATTTGGCGACCACAGTGCTCCACAGAAGCCCTCTCCCAGTaGTCAGGTGCCAGGTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPDSRGASRTIWRPQCSTEALSQ*SGARFS Trigger: AGAGAACCTGGCACCTGATCACTGGGAGAGGGCTTC...TGTGGAGCACTGTGGTCGCCAAATGGTTCTGGAGGCCCCTCGGGAATCAGGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192410.2 |
||
| CDS-3UTR TCA 90 bp | ACTCGTCCACTCAAAGGCTGCTGTAGAAACTTGCTGGCTATTTTCATGGGTTGGGCCTCAGCTCCGCCTTaGATGTCTGCTGCCAGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: TRPLKGCCRNLLAIFMGWASAPP*MSAASP Trigger: GGGGCTGGCAGCAGACATTCAAGGCGGAGCTGAGGC...CCAACCCATGAAAATAGCCAGCAAGTTTCTACAGCAGCCTTTGAGTGGACGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
||
| CDS-3UTR TCA 90 bp | TTTTTGTTTGTTATTAGTGGTGGTGGTGGTGGTGGTGTGTGTATGTGTGTGTGTTCGAAGGATGTCCCCTaGTTCCCGAGGGGCCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FLFVISGGGGGGVCMCVCSKDVP*FPRGLQ Trigger: CTGGAGGCCCCTCGGGAATCAGGGGACATCCTTCGA...ACACACACACATACACACACCACCACCACCACCACCACTAATAACAAACAAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR GCA 90 bp | TATGTGTGTGTGTTCAAAGTGCTGAAGACTGACCTCAGGGCCTCATACATGCTATCCGCCTTGAATGTCTaGTGCCAGCCCCTTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: YVCVFKVLKTDLRASYMLSALNV*CQPLSS Trigger: GCTGCTAAGGGGCTGGCAGCAGACATTCAAGGCGGA...TAGCATGTATGAGGCCCTGAGGTCAGTCTTCAGCACTTTGAACACACACACATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR TCA 90 bp | AAAGTGCTGAAGACTGACCTCAGGGCCTCATACATGCTAAGAAAATTCTCTGCCGTAGGTGTGAAGCCCTaGGTGGTTGTAGTGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KVLKTDLRASYMLRKFSAVGVKP*VVVVPL Trigger: CAGAGGCACTACAACCACTCAGGGCTTCACACCTAC...GGCAGAGAATTTTCTTAGCATGTATGAGGCCCTGAGGTCAGTCTTCAGCACTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CCA 90 bp | TATGTGTGTGTGTTCAAAGTGCTGAAGACTGACCTCAGGGCCTCATACATGCTAGCAACTCATGCAGGTTaGCCTCCCATGCTTGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: YVCVFKVLKTDLRASYMLATHAG*PPMLAW Trigger: CCAAGCAAGCATGGGAGGCCAACCTGCATGAGTTGC...TAGCATGTATGAGGCCCTGAGGTCAGTCTTCAGCACTTTGAACACACACACATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR GCA 90 bp | ACCCCCAAAGGTTCAATTCTAACTCCTGTCTTTTCTGTACTGGTTCAGTCTCCACAGGTTGGCCTCCCATaGTTGCTTGGTGATGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: TPKGSILTPVFSVLVQSPQVGLP*LLGDVS Trigger: GCTCACATCACCAAGCAAGCATGGGAGGCCAACCTG...TGGAGACTGAACCAGTACAGAAAAGACAGGAGTTAGAATTGAACCTTTGGGGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR GCA 90 bp | AAAGTGCTGAAGACTGACCTCAGGGCCTCATACATGCTAAGAAAATTCTCTGCCTGGTATTGCAACTCATaGAGGTTGGCCTCCCATGCT | + |
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Preference number: 4 (lower is better) Translates to: KVLKTDLRASYMLRKFSAWYCNS*RLASHA Trigger: AGCATGGGAGGCCAACCTGCATGAGTTGCAATACCA...GGCAGAGAATTTTCTTAGCATGTATGAGGCCCTGAGGTCAGTCTTCAGCACTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CCA 90 bp | ACCCCCAAAGGTTCAATTCTAACTCCTGTCTTTTCTGTACTGGTTCAGTCTCCAACTGGAGAAACCCTGTaGTGCTGCCATCTTCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: TPKGSILTPVFSVLVQSPTGETL*CCHLLA Trigger: TGCTAGAAGATGGCAGCACCACAGGGTTTCTCCAGT...TGGAGACTGAACCAGTACAGAAAAGACAGGAGTTAGAATTGAACCTTTGGGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CCA 90 bp | AGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAATGATTGTTTTAGTTCTTCCCTCATTCACTTaGGTGGGTTGGTACATGACT | + |
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Preference number: 4 (lower is better) Translates to: RSAVPWEGTICLVMIVLVLPSFT*VGWYMT Trigger: AGTCATGTACCAACCCACCCAAGTGAATGAGGGAAG...AACTAAAACAATCATTACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR GCA 90 bp | GAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGAGGGAGAAACCCTGTGGTaGTGCCATCTTCTAGCAACT | + |
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Preference number: 4 (lower is better) Translates to: EQERLFCSRMGELAHNVEGETLW*CHLLAT Trigger: AGTTGCTAGAAGATGGCAGCACCACAGGGTTTCTCC...CTCAACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CCA 90 bp | AGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGACAATATGTCTGGTAATGATTTTTTCATCCATGTCATaGAAATTTCTGGTGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SESRSAVPWEGTICLVMIFSSMS*KFLVGR Trigger: TCTACCCACCAGAAATTTCCATGACATGGATGAAAA...AATCATTACCAGACATATTGTCCCCTCCCATGGAACGGCAGACCTAGACTCACT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| 3UTR CAA 72 bp | ATCTCCAGCCAAACACTATTATTTCATGTTGAAATATaGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: ISSQTLLFHVEI*QVSLGLPFHGR Trigger: CCTCCCATGGAACGGCAGACCTAGACTCACTTGCAATATTTCAACATGAAATAATAGTGTTTGGCTGGAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| CDS-3UTR TCA 90 bp | GGTCAAAGTTCTTACATGGTAAACATTCTCAGGAGAGAAAATGAACAAGAAAGGCCCATGCTTGCTTGGTaGTGTGAGCCACATAATCCA | + |
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Preference number: 4 (lower is better) Translates to: GQSSYMVNILRRENEQERPMLAW*CEPHNP Trigger: TGGATTATGTGGCTCACATCACCAAGCAAGCATGGG...CCTTTCTTGTTCATTTTCTCTCCTGAGAATGTTTACCATGTAAGAACTTTGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CCA 90 bp | TGTAGAAACTTGCTGGCTATTTTCATGGGTTGGCTCAACCCTACTTATAGATTCCATGGAAATTTCTGGTaGGTAGAAGCCATGAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: CRNLLAIFMGWLNPTYRFHGNFW*VEAMSS Trigger: AGAGCTCATGGCTTCTACCCACCAGAAATTTCCATG...GAATCTATAAGTAGGGTTGAGCCAACCCATGAAAATAGCCAGCAAGTTTCTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| 3UTR CAA 72 bp | TGCCATAAATGTAGCCAGACAAACATGCAATATTCCTaGCTTTCTGACAGAGCCACCATGAACTGGATACTT | + |
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Preference number: 4 (lower is better) Translates to: CHKCSQTNMQYS*LSDRATMNWIL Trigger: AAGTATCCAGTTCATGGTGGCTCTGTCAGAAAGCAAGGAATATTGCATGTTTGTCTGGCTACATTTATGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| 3UTR CAA 72 bp | GAGTACTGGGCTTCTAAGATTCCCATCACACTCAGCTaGATAAATTATTGTTCTAATTTCTCACAGAAACAG | + |
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Preference number: 4 (lower is better) Translates to: EYWASKIPITLS*INYCSNFSQKQ Trigger: CTGTTTCTGTGAGAAATTAGAACAATAATTTATCAAGCTGAGTGTGATGGGAATCTTAGAAGCCCAGTACTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027744.10 ENSMUST00000194612.6 |
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| CDS-3UTR CCA 90 bp | AATGAAGAAAAATTTGTAGCTCCTATCTTCCTGTCACAAGTGCTCAGTTTTACATTCACTTGGGTGGGTTaGTACATGACTTCTTTTAGT | + |
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Preference number: 4 (lower is better) Translates to: NEEKFVAPIFLSQVLSFTFTWVG*YMTSFS Trigger: ACTAAAAGAAGTCATGTACCAACCCACCCAAGTGAA...TGTAAAACTGAGCACTTGTGACAGGAAGATAGGAGCTACAAATTTTTCTTCATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CAA 90 bp | TTTTTGTTTGTTATTAGTGGTGGTGGTGGTGGTGGTGTGTGTATGTGTGTGTGTTGCCTCAGCTCCGCCTaGAATGTCTGCTGCCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: FLFVISGGGGGGVCMCVCCLSSA*NVCCQP Trigger: GGGCTGGCAGCAGACATTCAAGGCGGAGCTGAGGCA...ACACACACACATACACACACCACCACCACCACCACCACTAATAACAAACAAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CAA 90 bp | AATGAACAAGAAAGGCTGTTTTGTAGTAGAATGGGGGAACTTGCACATAATGTTGTTGGCCTCCCATGCTaGCTTGGTGATGTGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: NEQERLFCSRMGELAHNVVGLPC*LGDVSH Trigger: GTGGCTCACATCACCAAGCAAGCATGGGAGGCCAAC...AACATTATGTGCAAGTTCCCCCATTCTACTACAAAACAGCCTTTCTTGTTCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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| CDS-3UTR CAA 90 bp | TTTCATGTTGAAATATTGCAAGTGAGTCTAGGTCTGCCGTTCCATGGGAGGGGATCCGTAATCCACTTCTaGGGCAATTTCTTCCCCATT | + |
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Preference number: 5 (lower is better) Translates to: FHVEILQVSLGLPFHGRGSVIHF*GNFFPI Trigger: AATGGGGAAGAAATTGCCCAAGAAGTGGATTACGGA...TCCCCTCCCATGGAACGGCAGACCTAGACTCACTTGCAATATTTCAACATGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027744.10 |
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