RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MPP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079550

Ensembl transcript IDs: ENSMUST00000066374.14, ENSMUST00000078874.14, ENSMUST00000114275.9, ENSMUST00000186477.2, ENSMUST00000191200.7

Found 313 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATaGGTAGCTCTGTATATGTATAGGATGCTATTTATAGCTATACAA +
Preference number: 1 (lower is better)
Translates to: ISSYGETSGKCLRAK*VALYMYRMLFIAIQ
Trigger: TTGTATAGCTATAAATAGCATCCTATACATATACAGAGCTACTCATTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
3UTR-3UTR CCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCACTGCTGTTTTCAATaGCAGCCGTTATTCCGGATC +
Preference number: 2 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCHCCFQ*QPLFRI
Trigger: GATCCGGAATAACGGCTGCCATTGAAAACAGCAGTG...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
3UTR TCA 72 bp TATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATaGGTAGCTCTGTATATGTATAGGATGCTATTTATA +
Preference number: 3 (lower is better)
Translates to: YGETSGKCLRAK*VALYMYRMLFI
Trigger: TATAAATAGCATCCTATACATATACAGAGCTACTCATTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATCCGCCGGCTGCCGCTaGTACCTCACCACCTCCTCG +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGSAGCR*YLTTSS
Trigger: CGAGGAGGTGGTGAGGTACCAGCGGCAGCCGGCGGA...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTCCACCAGCCCGCCATaGATGACCCTGGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPSTSPP*MTLATR
Trigger: CCTGGTGGCCAGGGTCATCCATGGCGGGCTGGTGGA...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATCCACCAGCCCGCCATaGATGACCCTGGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGSTSPP*MTLATR
Trigger: CCTGGTGGCCAGGGTCATCCATGGCGGGCTGGTGGA...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCTCCGCCGGCTGCCGCTaGTACCTCACCACCTCCTCG +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSSAGCR*YLTTSS
Trigger: CGAGGAGGTGGTGAGGTACCAGCGGCAGCCGGCGGA...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACCCAGCCCGCCATGGATaGCCCTGGCCACCAGGATAT +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDPARHG*PWPPGY
Trigger: ATATCCTGGTGGCCAGGGTCATCCATGGCGGGCTGG...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATCCACCAGCCCGCCATaGATGACCCTGGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKSTSPP*MTLATR
Trigger: CCTGGTGGCCAGGGTCATCCATGGCGGGCTGGTGGA...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTCCACCAGCCCGCCATaGATGACCCTGGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDSTSPP*MTLATR
Trigger: CCTGGTGGCCAGGGTCATCCATGGCGGGCTGGTGGA...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGCCGGCTGCCGCTaGTACCTCACCACCTCCTCG +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYSAGCR*YLTTSS
Trigger: CGAGGAGGTGGTGAGGTACCAGCGGCAGCCGGCGGA...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGGGCAGTCGTAGACCTTaGGCAGAGCCTGCAGCCATG +
Preference number: 4 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRGSRRP*AEPAAM
Trigger: CATGGCTGCAGGCTCTGCTCAAGGTCTACGACTGCC...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACCAGCCCGCCATGGATaGCCCTGGCCACCAGGATAT +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTPARHG*PWPPGY
Trigger: ATATCCTGGTGGCCAGGGTCATCCATGGCGGGCTGG...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAACCAGCCCGCCATGGATaGCCCTGGCCACCAGGATAT +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKPARHG*PWPPGY
Trigger: ATATCCTGGTGGCCAGGGTCATCCATGGCGGGCTGG...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCATCCGCCGGCTGCCGCTaGTACCTCACCACCTCCTCG +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMASAGCR*YLTTSS
Trigger: CGAGGAGGTGGTGAGGTACCAGCGGCAGCCGGCGGA...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGGCAGTCGTAGACCTTaGGCAGAGCCTGCAGCCATG +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTGSRRP*AEPAAM
Trigger: CATGGCTGCAGGCTCTGCTCAAGGTCTACGACTGCC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGAGCCCAGCACAGATGGTaGGGTCTGAGATTTTCCGGG +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGAQHRW*GLRFSG
Trigger: CCCGGAAAATCTCAGACCTCACCATCTGTGCTGGGC...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACTGCAGCTGGCTGAAGTaGGACTTCCTGCGACAGAGG +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDCSWLK*DFLRQR
Trigger: CCTCTGTCGCAGGAAGTCTCACTTCAGCCAGCTGCA...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACGTGCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGT +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDVLGWI*GRCEVG
Trigger: ACCAACCTCACACCTGCCTCAAATCCACCCGAGCAC...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
CDS-3UTR TCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGTGCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGT +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPVLGWI*GRCEVG
Trigger: ACCAACCTCACACCTGCCTCAAATCCACCCGAGCAC...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
CDS-3UTR GCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACTGTAGCAGCTGCAGCTaGAGCACAGGCTGGCATGCA +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDCSSCS*STGWHA
Trigger: TGCATGCCAGCCTGTGCTGCAGCTGCAGCTGCTACA...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGCAGCCCAGCATCCATaGAGGGGATGTCGGGATCCA +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSAAQHP*RGCRDP
Trigger: TGGATCCCGACATCCCCTGCATGGATGCTGGGCTGC...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS-3UTR TCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGGGCAGTCGTAGACCTTaGGCAGAGCCTGCAGCCATG +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGGSRRP*AEPAAM
Trigger: CATGGCTGCAGGCTCTGCTCAAGGTCTACGACTGCC...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCAGCCCGCCATGGATaGCCCTGGCCACCAGGATAT +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIPARHG*PWPPGY
Trigger: ATATCCTGGTGGCCAGGGTCATCCATGGCGGGCTGG...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGCCCAGCACAGATGGTaGGGTCTGAGATTTTCCGGG +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSAQHRW*GLRFSG
Trigger: CCCGGAAAATCTCAGACCTCACCATCTGTGCTGGGC...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGCCCAGCACAGATGGTaGGGTCTGAGATTTTCCGGG +
Preference number: 4 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAAAQHRW*GLRFSG
Trigger: CCCGGAAAATCTCAGACCTCACCATCTGTGCTGGGC...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACATGCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGT +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDMLGWI*GRCEVG
Trigger: ACCAACCTCACACCTGCCTCAAATCCACCCGAGCAT...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS-3UTR TCA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCTGCAGCTGGCTGAAGTaGGACTTCCTGCGACAGAGG +
Preference number: 4 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAACSWLK*DFLRQR
Trigger: CCTCTGTCGCAGGAAGTCTCACTTCAGCCAGCTGCA...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACATGCAGCTGGCTGAAGTaGGACTTCCTGCGACAGAGG +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTCSWLK*DFLRQR
Trigger: CCTCTGTCGCAGGAAGTCTCACTTCAGCCAGCTGCA...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCTGCAGCTGGCTGAAGTaGGACTTCCTGCGACAGAGG +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSCSWLK*DFLRQR
Trigger: CCTCTGTCGCAGGAAGTCTCACTTCAGCCAGCTGCA...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTGGCATGCAGCTGGCTaGAGTGAGACTTCCTGCGAC +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDWHAAG*SETSCD
Trigger: GTCGCAGGAAGTCTCACTTCAGCCAGCTGCATGCCA...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATGGCATGCAGCTGGCTaGAGTGAGACTTCCTGCGAC +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKWHAAG*SETSCD
Trigger: GTCGCAGGAAGTCTCACTTCAGCCAGCTGCATGCCA...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACCTTCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGT +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDLLGWI*GRCEVG
Trigger: ACCAACCTCACACCTGCCTCAAATCCACCCGAGAAG...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACCTTGAGCAGAGCCTaGAGCCATGGTGAATGGAGG +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDTLSRA*SHGEWR
Trigger: CCTCCATTCACCATGGCTGCAGGCTCTGCTCAAGGT...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATGCAGCCCAGCATCCATaGAGGGGATGTCGGGATCCT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYAAQHP*RGCRDP
Trigger: AGGATCCCGACATCCCCTGCATGGATGCTGGGCTGC...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGAGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTC +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGEIFRA*HQRASF
Trigger: GAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTC...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTC +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDEIFRA*HQRASF
Trigger: GAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTC...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGCACCAGAACTCCCGCTaGTTCCTCTTCAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPHQNSR*FLFRRW
Trigger: CCACCTTCTGAAGAGGAAGCAGCGGGAGTTCTGGTG...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACCACCAGAACTCCCGCTaGTTCCTCTTCAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDHQNSR*FLFRRW
Trigger: CCACCTTCTGAAGAGGAAGCAGCGGGAGTTCTGGTG...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCTGTAGCAGCTGCAGCTaGAGCACAGGCTGGCATGCA +
Preference number: 4 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAACSSCS*STGWHA
Trigger: TGCATGCCAGCCTGTGCTGCAGCTGCAGCTGCTACA...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGATCCATCTTCTGGCTaGTCACAGGCGGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTDPSSG*SQAGQR
Trigger: TCTCTGCCCCGCCTGTGAGCAGCCAGAAGATGGATC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS-3UTR CCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCT +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPVQRSH*FRTGGP
Trigger: AGGGCCACCTGTACGGAACCAGTGTGAACGCTGTAC...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCT +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDVQRSH*FRTGGP
Trigger: AGGGCCACCTGTACGGAACCAGTGTGAACGCTGTAC...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATCCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDPEPSV*RTTAGH
Trigger: GTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGG...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSPEPSV*RTTAGH
Trigger: GTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGG...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTPEPSV*RTTAGH
Trigger: GTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGG...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAGGCAGTCGTAGACCTTaGGCAGAGCCTGCAGCCATG +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKGSRRP*AEPAAM
Trigger: CATGGCTGCAGGCTCTGCTCAAGGTCTACGACTGCC...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACTTATCTCATGACGCTTaGTGGTTGCTCCCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDLSHDA*WLLPGA
Trigger: AGCCCCTGGGAGCAACCATCAAGCGTCATGAGATAA...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTATCTCATGACGCTTaGTGGTTGCTCCCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGLSHDA*WLLPGA
Trigger: AGCCCCTGGGAGCAACCATCAAGCGTCATGAGATAA...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTTATCTCATGACGCTTaGTGGTTGCTCCCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPLSHDA*WLLPGA
Trigger: AGCCCCTGGGAGCAACCATCAAGCGTCATGAGATAA...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTGCCCAGCACAGATGGTaGGGTCTGAGATTTTCCGGG +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTAQHRW*GLRFSG
Trigger: CCCGGAAAATCTCAGACCTCACCATCTGTGCTGGGC...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGTGCAGCTGGCTGAAGTaGGACTTCCTGCGACAGAGG +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGCSWLK*DFLRQR
Trigger: CCTCTGTCGCAGGAAGTCTCACTTCAGCCAGCTGCA...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGGCATGCAGCTGGCTaGAGTGAGACTTCCTGCGAC +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYWHAAG*SETSCD
Trigger: GTCGCAGGAAGTCTCACTTCAGCCAGCTGCATGCCA...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCACTGCAGTTCTTCCTaGGCCTTCTGTATGGCGGAC +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSHCSSS*AFCMAD
Trigger: GTCCGCCATACAGAAGGCTCAGGAAGAACTGCAGTG...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAACACTCAGCAAGGCCTTaGAGTGAGGAGCCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKHSARP*SEEPEG
Trigger: TCCTTCAGGCTCCTCACTGCAAGGCCTTGCTGAGTG...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCACTCAGCAAGGCCTTaGAGTGAGGAGCCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSHSARP*SEEPEG
Trigger: TCCTTCAGGCTCCTCACTGCAAGGCCTTGCTGAGTG...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAGCAGCCCAGCATCCATaGAGGGGATGTCGGGATCCT +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKAAQHP*RGCRDP
Trigger: AGGATCCCGACATCCCCTGCATGGATGCTGGGCTGC...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTC +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTEIFRA*HQRASF
Trigger: GAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCCACCAGAACTCCCGCTaGTTCCTCTTCAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAAHQNSR*FLFRRW
Trigger: CCACCTTCTGAAGAGGAAGCAGCGGGAGTTCTGGTG...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGTAGCAGCTGCAGCTaGAGCACAGGCTGGCATGCA +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYCSSCS*STGWHA
Trigger: TGCATGCCAGCCTGTGCTGCAGCTGCAGCTGCTACA...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGATTCTCAGGATCAGGTaGCGTGGGAAGAGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRILRIR*RGKSSV
Trigger: GACAGAGCTCTTCCCACGCCACCTGATCCTGAGAAT...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRGNRKL*VTAPRP
Trigger: AGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCC...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGACTGGTTCCGTACAGGTaGCCCTTGTACTCACCATAC +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGLVPYR*PLYSPY
Trigger: GTATGGTGAGTACAAGGGCCACCTGTACGGAACCAG...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCT +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSVQRSH*FRTGGP
Trigger: AGGGCCACCTGTACGGAACCAGTGTGAACGCTGTAC...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCT +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTVQRSH*FRTGGP
Trigger: AGGGCCACCTGTACGGAACCAGTGTGAACGCTGTAC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTTCGGGATCCATCTTCTaGCTGCTCACAGGCGGGGCA +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVISGSIF*LLTGGA
Trigger: TGCCCCGCCTGTGAGCAGCCAGAAGATGGATCCCGA...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS-3UTR TCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACATCCCCTGTTATCTCATaGCGCTTGATGGTTGCTCCC +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTSPVIS*RLMVAP
Trigger: GGGAGCAACCATCAAGCGTCATGAGATAACAGGGGA...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAAGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKVQALY*NSIHFH
Trigger: GTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGAC...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGCCCAGCACAGATGGTaGGGTCTGAGATTTTCCGGG +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIAQHRW*GLRFSG
Trigger: CCCGGAAAATCTCAGACCTCACCATCTGTGCTGGGC...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATCACTGCAGTTCTTCCTaGGCCTTCTGTATGGCGGAC +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYHCSSS*AFCMAD
Trigger: GTCCGCCATACAGAAGGCTCAGGAAGAACTGCAGTG...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTCACTGCAGTTCTTCCTaGGCCTTCTGTATGGCGGAC +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTHCSSS*AFCMAD
Trigger: GTCCGCCATACAGAAGGCTCAGGAAGAACTGCAGTG...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGACTCATTGGTCAGCTCTaGTCCTCTGTCAGACTGTCT +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGLIGQL*SSVRLS
Trigger: AGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAG...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGACCTTGAGCAGAGCCTaGAGCCATGGTGAATGGAGG +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGTLSRA*SHGEWR
Trigger: CCTCCATTCACCATGGCTGCAGGCTCTGCTCAAGGT...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTACCTTGAGCAGAGCCTaGAGCCATGGTGAATGGAGG +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTTLSRA*SHGEWR
Trigger: CCTCCATTCACCATGGCTGCAGGCTCTGCTCAAGGT...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGCACTCAGCAAGGCCTTaGAGTGAGGAGCCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGHSARP*SEEPEG
Trigger: TCCTTCAGGCTCCTCACTGCAAGGCCTTGCTGAGTG...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTAAACCATCTTCTGGCTaGTCACAGGCGGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTKPSSG*SQAGQR
Trigger: TCTCTGCCCCGCCTGTGAGCAGCCAGAAGATGGTTT...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATAAACCATCTTCTGGCTaGTCACAGGCGGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYKPSSG*SQAGQR
Trigger: TCTCTGCCCCGCCTGTGAGCAGCCAGAAGATGGTTT...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTTGTAGCAGCTGCAGCTaGAGCACAGGCTGGCATGCA +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVICSSCS*STGWHA
Trigger: TGCATGCCAGCCTGTGCTGCAGCTGCAGCTGCTACA...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGAGCTCTGTCCTCATTaGTCAGCTCTGCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTELCPH*SALLLC
Trigger: ACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGAGCTCTGTCCTCATTaGTCAGCTCTGCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSELCPH*SALLLC
Trigger: ACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTC...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATCAGGATCAGGTGGCGTaGGAAGAGCTCTGTCCTCAT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYQDQVA*EELCPH
Trigger: ATGAGGACAGAGCTCTTCCCACGCCACCTGATCCTG...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATATTCTCAGGATCAGGTaGCGTGGGAAGAGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDILRIR*RGKSSV
Trigger: GACAGAGCTCTTCCCACGCCACCTGATCCTGAGAAT...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAAGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKGNRKL*VTAPRP
Trigger: AGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCC...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSGNRKL*VTAPRP
Trigger: AGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCC...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGCTCCCAGGGGCTGTTaGTTTTTCACCAGACAAACA +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPAPRGC*FFTRQT
Trigger: TGTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGC...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGGCTCCCAGGGGCTGTTaGTTTTTCACCAGACAAACA +
Preference number: 4 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRAPRGC*FFTRQT
Trigger: TGTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGC...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCTCCGCCGGCTGCCGCTaGTACCTCACCACCTCCTCG +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCSAGCR*YLTTSS
Trigger: CGAGGAGGTGGTGAGGTACCAGCGGCAGCCGGCGGA...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCT +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTVQRSH*FRTGGP
Trigger: AGGGCCACCTGTACGGAACCAGTGTGAACGCTGTAC...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCACCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAPEPSV*RTTAGH
Trigger: GTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGG...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGGCAGTCGTAGACCTTaGGCAGAGCCTGCAGCCATG +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMGSRRP*AEPAAM
Trigger: CATGGCTGCAGGCTCTGCTCAAGGTCTACGACTGCC...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATGGTTCAAAGTCTTTCTaGGCCACTGTGTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDGSKSF*ATVSWA
Trigger: TGCCCATGACACAGTGGCTCAGAAAGACTTTGAACC...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCCTGTTATCTCATaGCGCTTGATGGTTGCTCCC +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYSPVIS*RLMVAP
Trigger: GGGAGCAACCATCAAGCGTCATGAGATAACAGGGGA...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGTCCCCTGTTATCTCATaGCGCTTGATGGTTGCTCCC +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGSPVIS*RLMVAP
Trigger: GGGAGCAACCATCAAGCGTCATGAGATAACAGGGGA...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYVQALY*NSIHFH
Trigger: GTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGAC...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTGTGGCACAGCACTTTaGAAACAGCTGGGGTTACAT +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPCGTAL*KQLGLH
Trigger: ATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACA...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATCTCATTGGTCAGCTCTaGTCCTCTGTCAGACTGTCT +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDLIGQL*SSVRLS
Trigger: AGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAG...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCCAGCATCCATaGAGGGGATGTCGGGATCCT +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMAAQHP*RGCRDP
Trigger: AGGATCCCGACATCCCCTGCATGGATGCTGGGCTGC...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTC +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAEIFRA*HQRASF
Trigger: GAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTC...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAACACCAGAACTCCCGCTaGTTCCTCTTCAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKHQNSR*FLFRRW
Trigger: CCACCTTCTGAAGAGGAAGCAGCGGGAGTTCTGGTG...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGAGGATTATCTGTAGCTaGTGCTGGTGCCTTCTGGAA +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPRIICS*CWCLLE
Trigger: TTCCAGAAGGCACCAGCAGCAGCTACAGATAATCCT...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS-3UTR GCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCTGTCTCATCCTCCCTaGTGGAGGATTATCTGTAGC +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSLSHPP*WRIICS
Trigger: GCTACAGATAATCCTCCAGCAGGGAGGATGAGACAG...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTGAGCTCTGTCCTCATTaGTCAGCTCTGCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTELCPH*SALLLC
Trigger: ACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTC...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTATTCTCAGGATCAGGTaGCGTGGGAAGAGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTILRIR*RGKSSV
Trigger: GACAGAGCTCTTCCCACGCCACCTGATCCTGAGAAT...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATATTCTCAGGATCAGGTaGCGTGGGAAGAGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYILRIR*RGKSSV
Trigger: GACAGAGCTCTTCCCACGCCACCTGATCCTGAGAAT...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYGNRKL*VTAPRP
Trigger: AGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCC...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGATATTGTCTGGCAGTaGGGGGAGAAGGGGTTCAAA +
Preference number: 4 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAADIVWQ*GEKGFK
Trigger: TTTGAACCCCTTCTCCCCCCACTGCCAGACAATATC...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAAGATATTGTCTGGCAGTaGGGGGAGAAGGGGTTCAAA +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKDIVWQ*GEKGFK
Trigger: TTTGAACCCCTTCTCCCCCCACTGCCAGACAATATC...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGATATTGTCTGGCAGTaGGGGGAGAAGGGGTTCAAA +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTDIVWQ*GEKGFK
Trigger: TTTGAACCCCTTCTCCCCCCACTGCCAGACAATATC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATGATATTGTCTGGCAGTaGGGGGAGAAGGGGTTCAAA +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDDIVWQ*GEKGFK
Trigger: TTTGAACCCCTTCTCCCCCCACTGCCAGACAATATC...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAAGCTCCCAGGGGCTGTTaGTTTTTCACCAGACAAACA +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKAPRGC*FFTRQT
Trigger: TGTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGC...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATGCTCCCAGGGGCTGTTaGTTTTTCACCAGACAAACA +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDAPRGC*FFTRQT
Trigger: TGTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGC...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTCTGGTTCCGTACAGGTaGCCCTTGTACTCACCATAC +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTLVPYR*PLYSPY
Trigger: GTATGGTGAGTACAAGGGCCACCTGTACGGAACCAG...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTTCCCCTGTTATCTCATaGCGCTTGATGGTTGCTCCC +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVISPVIS*RLMVAP
Trigger: GGGAGCAACCATCAAGCGTCATGAGATAACAGGGGA...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAVQALY*NSIHFH
Trigger: GTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGAC...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIVQALY*NSIHFH
Trigger: GTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGAC...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTCTTGTGTCCGTACATaGGGCTTTCAAATGTTTCCC +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPSCVRT*GFQMFP
Trigger: GGGAAACATTTGAAAGCCTCATGTACGGACACAAGA...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGTCTTGTGTCCGTACATaGGGCTTTCAAATGTTTCCC +
Preference number: 4 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRSCVRT*GFQMFP
Trigger: GGGAAACATTTGAAAGCCTCATGTACGGACACAAGA...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGAAAAAACTGGCCAAACTaGCTCTCCATTTTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGKNWPN*LSIFWA
Trigger: AGCCCAGAAAATGGAGAGTCAGTTTGGCCAGTTTTT...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATCTCATTGGTCAGCTCTaGTCCTCTGTCAGACTGTCT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYLIGQL*SSVRLS
Trigger: AGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAG...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAAAAATATGGATCACTTaGTCAGGGTCCAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTKIWIT*SGSRPS
Trigger: AGAGGGCCTGGACCCTGAGCAAGTGATCCATATTTT...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATAAAATATGGATCACTTaGTCAGGGTCCAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDKIWIT*SGSRPS
Trigger: AGAGGGCCTGGACCCTGAGCAAGTGATCCATATTTT...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCAAAATATGGATCACTTaGTCAGGGTCCAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSKIWIT*SGSRPS
Trigger: AGAGGGCCTGGACCCTGAGCAAGTGATCCATATTTT...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAATGTAGCTGCTGCTGGTaGCTTCTGGAAATGCGGCAT +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKCSCCW*LLEMRH
Trigger: ATGCCGCATTTCCAGAAGGCACCAGCAGCAGCTACA...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTGCTCCCAGGGGCTGTTaGTTTTTCACCAGACAAACA +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTAPRGC*FFTRQT
Trigger: TGTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGC...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGAGACATAGCCAAAATATaGATCACTTGCTCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGDIAKI*ITCSGS
Trigger: GGACCCTGAGCAAGTGATCCATATTTTGGCTATGTC...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGACATAGCCAAAATATaGATCACTTGCTCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPDIAKI*ITCSGS
Trigger: GGACCCTGAGCAAGTGATCCATATTTTGGCTATGTC...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACCAGAGGGCATCATTCTaGTCCACAATCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: PLFRIFRAHYEASSFKQDQRASF*STICRM
Trigger: CATTCTACAGATTGTGGACCAGAATGATGCCCTCTG...GTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGAGAAACGGGTGGTATGTaGCACAGCACTTTGAAAACA +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGETGGM*HSTLKT
Trigger: TGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTC...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGCCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMPEPSV*RTTAGH
Trigger: GTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGG...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAATCTGTAGCTGCTGCTaGTGCCTTCTGGAAATGCGG +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAICSCC*CLLEMR
Trigger: CCGCATTTCCAGAAGGCACCAGCAGCAGCTACAGAT...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS-3UTR CCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGTCTCATCCTCCCTGCTaGAGGATTATCTGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGSHPPC*RIICSC
Trigger: GCAGCTACAGATAATCCTCCAGCAGGGAGGATGAGA...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS-3UTR TCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGGTTCAAAGTCTTTCTaGGCCACTGTGTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAGSKSF*ATVSWA
Trigger: TGCCCATGACACAGTGGCTCAGAAAGACTTTGAACC...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGGTTCAAAGTCTTTCTaGGCCACTGTGTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIGSKSF*ATVSWA
Trigger: TGCCCATGACACAGTGGCTCAGAAAGACTTTGAACC...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGTGGCACAGCACTTTaGAAACAGCTGGGGTTACAT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYCGTAL*KQLGLH
Trigger: ATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACA...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGTGTGGCACAGCACTTTaGAAACAGCTGGGGTTACAT +
Preference number: 4 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGCGTAL*KQLGLH
Trigger: ATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACA...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTTCAAATGTTTCCCTTaGCACGTAGTGATACTCACG +
Preference number: 4 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPFKCFP*HVVILT
Trigger: CGTGAGTATCACTACGTGTCAAGGGAAACATTTGAA...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATAAAAACTGGCCAAACTaGCTCTCCATTTTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDKNWPN*LSIFWA
Trigger: AGCCCAGAAAATGGAGAGTCAGTTTGGCCAGTTTTT...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAAAAAACTGGCCAAACTaGCTCTCCATTTTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTKNWPN*LSIFWA
Trigger: AGCCCAGAAAATGGAGAGTCAGTTTGGCCAGTTTTT...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCTCATTGGTCAGCTCTaGTCCTCTGTCAGACTGTCT +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVILIGQL*SSVRLS
Trigger: AGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAG...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAAACAATCCTCATTaGTTCTTCACTGTCGGGGAT +
Preference number: 4 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRTNNPH*FFTVGD
Trigger: ATCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGT...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGAAACCATCTTCTGGCTaGTCACAGGCGGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMKPSSG*SQAGQR
Trigger: TCTCTGCCCCGCCTGTGAGCAGCCAGAAGATGGTTT...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCAGCAGCCCAGCATCCATaGAGGGGATGTCGGGATCCT +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPAAQHP*RGCRDP
Trigger: AGGATCCCGACATCCCCTGCATGGATGCTGGGCTGC...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATGGCCACATGCATCTTaGAAGTTGTCATTCACAATC +
Preference number: 4 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGWPHAS*KLSFTI
Trigger: GATTGTGAATGACAACTTGCAAGATGCATGTGGCCA...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGATATTGTCTGGCAGTaGGGGGAGAAGGGGTTCAAA +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIDIVWQ*GEKGFK
Trigger: TTTGAACCCCTTCTCCCCCCACTGCCAGACAATATC...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATGAAACGGGTGGTATGTaGCACAGCACTTTGAAAACA +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDETGGM*HSTLKT
Trigger: TGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTC...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCTGGCATGCAGCTGGCTaGAGTGAGACTTCCTGCGAC +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCWHAAG*SETSCD
Trigger: GTCGCAGGAAGTCTCACTTCAGCCAGCTGCATGCCA...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATGGCATGCAGCTGGCTaGAGTGAGACTTCCTGCGAC +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPWHAAG*SETSCD
Trigger: GTCGCAGGAAGTCTCACTTCAGCCAGCTGCATGCCA...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTTCAAATGTTTCCCTTaGCACGTAGTGATACTCACG +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDFKCFP*HVVILT
Trigger: CGTGAGTATCACTACGTGTCAAGGGAAACATTTGAA...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATTCAAATGTTTCCCTTaGCACGTAGTGATACTCACG +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKFKCFP*HVVILT
Trigger: CGTGAGTATCACTACGTGTCAAGGGAAACATTTGAA...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTATCTTGTGTCCGTACATaGGGCTTTCAAATGTTTCCC +
Preference number: 4 (lower is better)
Translates to: YSGSLGHTMKLPALSRTLSCVRT*GFQMFP
Trigger: GGGAAACATTTGAAAGCCTCATGTACGGACACAAGA...TAGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATGTAGGTCTTCATCCTTaGACTTCATGTCCACATAGT +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDVGLHP*TSCPHS
Trigger: ACTATGTGGACATGAAGTTCAAGGATGAAGACCTAC...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAAGTAGGTCTTCATCCTTaGACTTCATGTCCACATAGT +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKVGLHP*TSCPHS
Trigger: ACTATGTGGACATGAAGTTCAAGGATGAAGACCTAC...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATAAAAACTGGCCAAACTaGCTCTCCATTTTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYKNWPN*LSIFWA
Trigger: AGCCCAGAAAATGGAGAGTCAGTTTGGCCAGTTTTT...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATACAAACAATCCTCATTaGTTCTTCACTGTCGGGGAT +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDTNNPH*FFTVGD
Trigger: ATCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGT...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAAAAATATGGATCACTTaGTCAGGGTCCAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKKIWIT*SGSRPS
Trigger: AGAGGGCCTGGACCCTGAGCAAGTGATCCATATTTT...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATGGCCACATGCATCTTaGAAGTTGTCATTCACAATC +
Preference number: 4 (lower is better)
Translates to: IPAISSYGETSGKCLRAKWPHAS*KLSFTI
Trigger: GATTGTGAATGACAACTTGCAAGATGCATGTGGCCA...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCTGGCCACATGCATCTTaGAAGTTGTCATTCACAATC +
Preference number: 4 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAAWPHAS*KLSFTI
Trigger: GATTGTGAATGACAACTTGCAAGATGCATGTGGCCA...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACATTCGTCCTTAGCTTCTaGGAGTTCCTCAGATTCAAA +
Preference number: 4 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTFVLSF*EFLRFK
Trigger: TTTGAATCTGAGGAACTCGCAGAAGCTAAGGACGAA...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp GCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTTCGTCCTTAGCTTCTaGGAGTTCCTCAGATTCAAA +
Preference number: 4 (lower is better)
Translates to: AVLMGQTLLFSMAAVIPDFVLSF*EFLRFK
Trigger: TTTGAATCTGAGGAACTCGCAGAAGCTAAGGACGAA...ATCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTGACATAGCCAAAATATaGATCACTTGCTCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTDIAKI*ITCSGS
Trigger: GGACCCTGAGCAAGTGATCCATATTTTGGCTATGTC...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATCAGAGGGCATCATTCTaGTCCACAATCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYQRASF*STICRM
Trigger: CATTCTACAGATTGTGGACCAGAATGATGCCCTCTG...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTCAGAGGGCATCATTCTaGTCCACAATCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTQRASF*STICRM
Trigger: CATTCTACAGATTGTGGACCAGAATGATGCCCTCTG...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATGAAACGGGTGGTATGTaGCACAGCACTTTGAAAACA +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYETGGM*HSTLKT
Trigger: TGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTC...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGCTGGTTCCGTACAGGTaGCCCTTGTACTCACCATAC +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMLVPYR*PLYSPY
Trigger: GTATGGTGAGTACAAGGGCCACCTGTACGGAACCAG...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGGTTCAAAGTCTTTCTaGGCCACTGTGTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMGSKSF*ATVSWA
Trigger: TGCCCATGACACAGTGGCTCAGAAAGACTTTGAACC...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTTTCAAATGTTTCCCTTaGCACGTAGTGATACTCACG +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTFKCFP*HVVILT
Trigger: CGTGAGTATCACTACGTGTCAAGGGAAACATTTGAA...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTTCTTGTGTCCGTACATaGGGCTTTCAAATGTTTCCC +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVISCVRT*GFQMFP
Trigger: GGGAAACATTTGAAAGCCTCATGTACGGACACAAGA...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCAACCTTGAGCAGAGCCTaGAGCCATGGTGAATGGAGG +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPTLSRA*SHGEWR
Trigger: CCTCCATTCACCATGGCTGCAGGCTCTGCTCAAGGT...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCACACTCAGCAAGGCCTTaGAGTGAGGAGCCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPHSARP*SEEPEG
Trigger: TCCTTCAGGCTCCTCACTGCAAGGCCTTGCTGAGTG...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTACAAACAATCCTCATTaGTTCTTCACTGTCGGGGAT +
Preference number: 4 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTTNNPH*FFTVGD
Trigger: ATCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGT...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATACAAACAATCCTCATTaGTTCTTCACTGTCGGGGAT +
Preference number: 4 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYTNNPH*FFTVGD
Trigger: ATCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGT...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCAAAACCATCTTCTGGCTaGTCACAGGCGGGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPKPSSG*SQAGQR
Trigger: TCTCTGCCCCGCCTGTGAGCAGCCAGAAGATGGTTT...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCAGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTC +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPEIFRA*HQRASF
Trigger: GAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTC...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTATGGCCACATGCATCTTaGAAGTTGTCATTCACAATC +
Preference number: 4 (lower is better)
Translates to: YSGSLGHTMKLPALSRTLWPHAS*KLSFTI
Trigger: GATTGTGAATGACAACTTGCAAGATGCATGTGGCCA...TAGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCAGAGGGCATCATTCTaGTCCACAATCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIQRASF*STICRM
Trigger: CATTCTACAGATTGTGGACCAGAATGATGCCCTCTG...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAGAAACGGGTGGTATGTaGCACAGCACTTTGAAAACA +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKETGGM*HSTLKT
Trigger: TGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTC...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCTTATCTCATGACGCTTaGTGGTTGCTCCCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCLSHDA*WLLPGA
Trigger: AGCCCCTGGGAGCAACCATCAAGCGTCATGAGATAA...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATCCCCTGTTATCTCATaGCGCTTGATGGTTGCTCCC +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPSPVIS*RLMVAP
Trigger: GGGAGCAACCATCAAGCGTCATGAGATAACAGGGGA...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCVQALY*NSIHFH
Trigger: GTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGAC...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAATTCAAATGTTTCCCTTaGCACGTAGTGATACTCACG +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKFKCFP*HVVILT
Trigger: CGTGAGTATCACTACGTGTCAAGGGAAACATTTGAA...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAGTAGGTCTTCATCCTTaGACTTCATGTCCACATAGT +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKVGLHP*TSCPHS
Trigger: ACTATGTGGACATGAAGTTCAAGGATGAAGACCTAC...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGTAGGTCTTCATCCTTaGACTTCATGTCCACATAGT +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAVGLHP*TSCPHS
Trigger: ACTATGTGGACATGAAGTTCAAGGATGAAGACCTAC...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTGTAGGTCTTCATCCTTaGACTTCATGTCCACATAGT +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIVGLHP*TSCPHS
Trigger: ACTATGTGGACATGAAGTTCAAGGATGAAGACCTAC...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAACAAACAATCCTCATTaGTTCTTCACTGTCGGGGAT +
Preference number: 4 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKTNNPH*FFTVGD
Trigger: ATCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGT...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCAGAGCTCTGTCCTCATTaGTCAGCTCTGCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPELCPH*SALLLC
Trigger: ACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTC...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCGNRKL*VTAPRP
Trigger: AGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCC...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCTGGTTCCGTACAGGTaGCCCTTGTACTCACCATAC +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCLVPYR*PLYSPY
Trigger: GTATGGTGAGTACAAGGGCCACCTGTACGGAACCAG...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp CATATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCTCATTGGTCAGCTCTaGTCCTCTGTCAGACTGTCT +
Preference number: 4 (lower is better)
Translates to: HMKSIKCSHSVTTLSHTCLIGQL*SSVRLS
Trigger: AGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAG...GCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTAAAAAGTTTCTTCATCTaGTTCCACACACTTCTCATC +
Preference number: 4 (lower is better)
Translates to: YSGSLGHTMKLPALSRTLKSFFI*FHTLLI
Trigger: GATGAGAAGTGTGTGGAAGCAGATGAAGAAACTTTT...TAGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGACATAGCCAAAATATaGATCACTTGCTCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMDIAKI*ITCSGS
Trigger: GGACCCTGAGCAAGTGATCCATATTTTGGCTATGTC...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR TCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATGTGGCACAGCACTTTaGAAACAGCTGGGGTTACAT +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPCGTAL*KQLGLH
Trigger: ATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACA...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp TATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTAATATATGATTTCTTCTaGTTCCACACACTTCTCATC +
Preference number: 4 (lower is better)
Translates to: YSGSLGHTMKLPALSRTLIYDFF*FHTLLI
Trigger: GATGAGAAGTGTGTGGAAGCAGAAGAAATCATATAT...TAGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS-3UTR GCA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTAAAAGTTTCTTCATCTaGTTCCACACACTTCTCATC +
Preference number: 4 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIKSFFI*FHTLLI
Trigger: GATGAGAAGTGTGTGGAAGCAGATGAAGAAACTTTT...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGTTCGTCCTTAGCTTCTaGGAGTTCCTCAGATTCAAA +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMFVLSF*EFLRFK
Trigger: TTTGAATCTGAGGAACTCGCAGAAGCTAAGGACGAA...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCATCTCATCAATCTTCATaGTGTCTTCATTCTCAAATG +
Preference number: 4 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMASHQSS*CLHSQM
Trigger: CATTTGAGAATGAAGACAGCATGAAGATTGATGAGA...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS-3UTR CCA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCACAGAGGGCATCATTCTaGTCCACAATCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPQRASF*STICRM
Trigger: CATTCTACAGATTGTGGACCAGAATGATGCCCTCTG...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR GCA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGAAAAGTTTCTTCATCTaGTTCCACACACTTCTCATC +
Preference number: 4 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMKSFFI*FHTLLI
Trigger: GATGAGAAGTGTGTGGAAGCAGATGAAGAAACTTTT...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS TCA 90 bp GTGTCAGGGGAAACCCATGCCTCTGGCACCCACTGCAGTTCTTCCTaGGCCTTCTGTATGGCGGACAACAGCTGGCCACATGCATCTTGC +
Preference number: 5 (lower is better)
Translates to: VSGETHASGTHCSSS*AFCMADNSWPHASC
Trigger: GCAAGATGCATGTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGGAAGAACTGCAGTGGGTGCCAGAGGCATGGGTTTCCCCTGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 90 bp GACCATTCTCAGGATCAGGTGGCGTGGGAAGAGCTCTGTCCTCATTaGTCAGCTCTGCTCCTCTGTCAGACTGTCTCATCCTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: DHSQDQVAWEELCPH*SALLLCQTVSSSLL
Trigger: CAGCAGGGAGGATGAGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCTTCCCACGCCACCTGATCCTGAGAATGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS GCA 90 bp AGGATCAGGTGGCGTGGGAAGAGCTCTGTCCTCATTGGTCAGCTCTaGTCCTCTGTCAGACTGTCTCATCCTCCCTGCTGGAGGATTATC +
Preference number: 5 (lower is better)
Translates to: RIRWRGKSSVLIGQL*SSVRLSHPPCWRII
Trigger: GATAATCCTCCAGCAGGGAGGATGAGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCTTCCCACGCCACCTGATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS GCA 90 bp GGGATTAGCCCAGCACAGATGGTGAGGTCTGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTCTGGTCCACAATCTGTAGAATGTCC +
Preference number: 5 (lower is better)
Translates to: GISPAQMVRSEIFRA*HQRASFWSTICRMS
Trigger: GGACATTCTACAGATTGTGGACCAGAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTCAGACCTCACCATCTGTGCTGGGCTAATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 90 bp CCCATGCCTCTGGCACCCACTGCAGTTCTTCCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCACATGCATCTTGCAAGTTGTCATTCA +
Preference number: 5 (lower is better)
Translates to: PMPLAPTAVLPEPSV*RTTAGHMHLASCHS
Trigger: TGAATGACAACTTGCAAGATGCATGTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGGAAGAACTGCAGTGGGTGCCAGAGGCATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 90 bp CTCATTGGTCAGCTCTGCTCCTCTGTCAGACTGTCTCATCCTCCCTaGTGGAGGATTATCTGTAGCTGCTGCTGGTGCCTTCTGGAAATG +
Preference number: 5 (lower is better)
Translates to: LIGQLCSSVRLSHPP*WRIICSCCWCLLEM
Trigger: CATTTCCAGAAGGCACCAGCAGCAGCTACAGATAATCCTCCAGCAGGGAGGATGAGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS CCA 90 bp TCATCAAGGACGGCGTGTACAGCGTTCACACTGGTTCCGTACAGGTaGCCCTTGTACTCACCATACTCCAGCATCTTGTGTCCGTACATG +
Preference number: 5 (lower is better)
Translates to: SSRTACTAFTLVPYR*PLYSPYSSILCPYM
Trigger: CATGTACGGACACAAGATGCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGGAACCAGTGTGAACGCTGTACACGCCGTCCTTGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 90 bp TGCAGATCTTGCCTTCATCAAGGACGGCGTGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCTTGTACTCACCATACTCCAGCATCT +
Preference number: 5 (lower is better)
Translates to: CRSCLHQGRRVQRSH*FRTGGPCTHHTPAS
Trigger: AGATGCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGGAACCAGTGTGAACGCTGTACACGCCGTCCTTGATGAAGGCAAGATCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 90 bp TCTTCATGCTGTCTTCATTCTCAAATGTGCATGCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGTACGGCTGAGACCACCAGAACTCCC +
Preference number: 5 (lower is better)
Translates to: SSCCLHSQMCMLGWI*GRCEVGTAETTRTP
Trigger: GGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCATGCACATTTGAGAATGAAGACAGCATGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS TCA 90 bp AGTCACGGGTTCGAGCCGACTGAATATCCTGAGGCTCTAGATCCATaGTGCAGATCTTGCCTTCATCAAGGACGGCGTGTACAGCGTTCA +
Preference number: 5 (lower is better)
Translates to: SHGFEPTEYPEALDP*CRSCLHQGRRVQRS
Trigger: TGAACGCTGTACACGCCGTCCTTGATGAAGGCAAGATCTGCATCATGGATCTAGAGCCTCAGGATATTCAGTCGGCTCGAACCCGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 90 bp GAAGGACTTGTCTTAGCTCTTGGATCTCGGGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCTCACAGGCTAAGATCTGTGCATGAG +
Preference number: 5 (lower is better)
Translates to: EGLVLALGSRGNRKL*VTAPRPHRLRSVHE
Trigger: CTCATGCACAGATCTTAGCCTGTGAGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCCCCGAGATCCAAGAGCTAAGACAAGTCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGCCGTACAGGTGGCCCTaGTACTCACCATACTCCAGC +
Preference number: 5 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRPYRWP*YSPYSS
Trigger: GCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGG...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp GTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGCCGTACAGGTGGCCCTaGTACTCACCATACTCCAGC +
Preference number: 5 (lower is better)
Translates to: VAVLMGQTLLFSMAAVIPPYRWP*YSPYSS
Trigger: GCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGG...CGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGAAGAGCTCTGTCCTCATaGGTCAGCTCTGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGRALSS*VSSAPL
Trigger: CAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCT...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAACCGTACAGGTGGCCCTaGTACTCACCATACTCCAGC +
Preference number: 5 (lower is better)
Translates to: IPAISSYGETSGKCLRAKPYRWP*YSPYSS
Trigger: GCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGG...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAAGAGCTCTGTCCTCATaGGTCAGCTCTGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTRALSS*VSSAPL
Trigger: CAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCT...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGTGCTCCCAGGGGCTGTaGGTTTTTCACCAGACAAAC +
Preference number: 5 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRCSQGL*VFHQTN
Trigger: GTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGCA...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGACAAAATATGGATCACTaGCTCAGGGTCCAGGCCCTC +
Preference number: 5 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGQNMDH*LRVQAL
Trigger: GAGGGCCTGGACCCTGAGCAAGTGATCCATATTTTG...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATCCGTACAGGTGGCCCTaGTACTCACCATACTCCAGC +
Preference number: 5 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYPYRWP*YSPYSS
Trigger: GCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGG...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACATGCTCCCAGGGGCTGTaGGTTTTTCACCAGACAAAC +
Preference number: 5 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTCSQGL*VFHQTN
Trigger: GTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGCA...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAATGCTCCCAGGGGCTGTaGGTTTTTCACCAGACAAAC +
Preference number: 5 (lower is better)
Translates to: IPAISSYGETSGKCLRAKCSQGL*VFHQTN
Trigger: GTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGCA...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCTGCTCCCAGGGGCTGTaGGTTTTTCACCAGACAAAC +
Preference number: 5 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSCSQGL*VFHQTN
Trigger: GTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGCA...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCAAAATATGGATCACTaGCTCAGGGTCCAGGCCCTC +
Preference number: 5 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSQNMDH*LRVQAL
Trigger: GAGGGCCTGGACCCTGAGCAAGTGATCCATATTTTG...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGTACAGGTGGCCCTaGTACTCACCATACTCCAGC +
Preference number: 5 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIPYRWP*YSPYSS
Trigger: GCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGG...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 90 bp CATAGCCAAAATATGGATCACTTGCTCAGGGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCACCAGTTTGTCTCCAGCATACAGCAA +
Preference number: 5 (lower is better)
Translates to: HSQNMDHLLRVQALY*NSIHFHQFVSSIQQ
Trigger: TTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGACCCTGAGCAAGTGATCCATATTTTGGCTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 90 bp CTCACGTCCATCCATTTCATAACTCTTTGGGAAACGGGTGGTATGTaGCACAGCACTTTGAAAACAGCTGGGGTTACATCCAATGAGCTG +
Preference number: 5 (lower is better)
Translates to: LTSIHFITLWETGGM*HSTLKTAGVTSNEL
Trigger: CAGCTCATTGGATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGTTATGAAATGGATGGACGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAAGAGCTCTGTCCTCATaGGTCAGCTCTGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMARALSS*VSSAPL
Trigger: CAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCT...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAAAGAGCTCTGTCCTCATaGGTCAGCTCTGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKRALSS*VSSAPL
Trigger: CAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCT...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGTTCACTTCCACCAGTTaGTCTCCAGCATACAGCAAC +
Preference number: 5 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRFTSTS*SPAYSN
Trigger: GTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAA...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTCACTTCCACCAGTTaGTCTCCAGCATACAGCAAC +
Preference number: 5 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGFTSTS*SPAYSN
Trigger: GTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAA...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGATGTCGGGATCCTCTaGGGGCCAGTAATCAATCAT +
Preference number: 5 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAADVGIL*GPVINH
Trigger: ATGATTGATTACTGGCCCCAAGAGGATCCCGACATC...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACAGATGTCGGGATCCTCTaGGGGCCAGTAATCAATCAT +
Preference number: 5 (lower is better)
Translates to: RYSGSLGHTMKLPALSRTDVGIL*GPVINH
Trigger: ATGATTGATTACTGGCCCCAAGAGGATCCCGACATC...TGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CCA 90 bp GATCTTAGCGTTTTTCCGAGAGTGTCTCATGGAGCTCGTGTTAGGTaGCTTAATAAATATAACGTAGGGCTTCAAGTCACGGGTTCGAGC +
Preference number: 5 (lower is better)
Translates to: DLSVFPRVSHGARVR*LNKYNVGLQVTGSS
Trigger: GCTCGAACCCGTGACTTGAAGCCCTACGTTATATTTATTAAGCCACCTAACACGAGCTCCATGAGACACTCTCGGAAAAACGCTAAGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGACAAACAATCCTCATaGCTTCTTCACTGTCGGGGA +
Preference number: 5 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAADKQSS*LLHCRG
Trigger: TCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGTC...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp GACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCTTCACTTCCACCAGTTaGTCTCCAGCATACAGCAAC +
Preference number: 5 (lower is better)
Translates to: DFIVAVLMGQTLLFSMAAFTSTS*SPAYSN
Trigger: GTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAA...GGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGAAACAAAATATGGATCACTaGCTCAGGGTCCAGGCCCTC +
Preference number: 5 (lower is better)
Translates to: LTFSDNIVTYLPLAHMGKQNMDH*LRVQAL
Trigger: GAGGGCCTGGACCCTGAGCAAGTGATCCATATTTTG...TTTCCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATGATGTCGGGATCCTCTaGGGGCCAGTAATCAATCAT +
Preference number: 5 (lower is better)
Translates to: HSRSSNGSNTAVFNGSRYDVGIL*GPVINH
Trigger: ATGATTGATTACTGGCCCCAAGAGGATCCCGACATC...ATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAAATGTGGCACAGCACTTaGAAAACAGCTGGGGTTACA +
Preference number: 5 (lower is better)
Translates to: IPAISSYGETSGKCLRAKMWHST*KTAGVT
Trigger: TGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACAT...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGACTGGCCACATGCATCTaGCAAGTTGTCATTCACAAT +
Preference number: 5 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGLATCI*QVVIHN
Trigger: ATTGTGAATGACAACTTGCAAGATGCATGTGGCCAG...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGCCGTTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGCTGGCCACATGCATCTaGCAAGTTGTCATTCACAAT +
Preference number: 5 (lower is better)
Translates to: SRYSGSLGHTMKLPALSRLATCI*QVVIHN
Trigger: ATTGTGAATGACAACTTGCAAGATGCATGTGGCCAG...CCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAACGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGAGAGCTCTGTCCTCATaGGTCAGCTCTGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMRALSS*VSSAPL
Trigger: CAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCT...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTAGCTCATATGGGGGACAAACAATCCTCATaGCTTCTTCACTGTCGGGGA +
Preference number: 5 (lower is better)
Translates to: MLTFSDNIVTYLPLAHMGDKQSS*LLHCRG
Trigger: TCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGTC...CCCCATATGAGCTAATGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTGACAAACAATCCTCATaGCTTCTTCACTGTCGGGGA +
Preference number: 5 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTDKQSS*LLHCRG
Trigger: TCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGTC...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGATGTCGGGATCCTCTaGGGGCCAGTAATCAATCAT +
Preference number: 5 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMADVGIL*GPVINH
Trigger: ATGATTGATTACTGGCCCCAAGAGGATCCCGACATC...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp TTATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTATGTGGCACAGCACTTaGAAAACAGCTGGGGTTACA +
Preference number: 5 (lower is better)
Translates to: LFRIFRAHYEASSFKQDTMWHST*KTAGVT
Trigger: TGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACAT...AGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCCTGGCCACATGCATCTaGCAAGTTGTCATTCACAAT +
Preference number: 5 (lower is better)
Translates to: SRSSNGSNTAVFNGSRYSLATCI*QVVIHN
Trigger: ATTGTGAATGACAACTTGCAAGATGCATGTGGCCAG...GGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATACCTGCCATTAGCTCATATGGGGAAACATCGGGAAAATGCCTGAGAGCCAAACTGGCCACATGCATCTaGCAAGTTGTCATTCACAAT +
Preference number: 5 (lower is better)
Translates to: IPAISSYGETSGKCLRAKLATCI*QVVIHN
Trigger: ATTGTGAATGACAACTTGCAAGATGCATGTGGCCAG...TTTGGCTCTCAGGCATTTTCCCGATGTTTCCCCATATGAGCTAATGGCAGGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS TCA 90 bp CTCCAGCATCTTGTGTCCGTACATGAGGCTTTCAAATGTTTCCCTTaGCACGTAGTGATACTCACGTCCATCCATTTCATAACTCTTTGG +
Preference number: 5 (lower is better)
Translates to: LQHLVSVHEAFKCFP*HVVILTSIHFITLW
Trigger: CCAAAGAGTTATGAAATGGATGGACGTGAGTATCACTACGTGTCAAGGGAAACATTTGAAAGCCTCATGTACGGACACAAGATGCTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 90 bp GTCCTTAGCTTCTGCGAGTTCCTCAGATTCAAAAGTTTCTTCATCTaGTTCCACACACTTCTCATCAATCTTCATGCTGTCTTCTCGGGT +
Preference number: 5 (lower is better)
Translates to: VLSFCEFLRFKSFFI*FHTLLINLHAVFSG
Trigger: ACCCGAGAAGACAGCATGAAGATTGATGAGAAGTGTGTGGAAGCAGATGAAGAAACTTTTGAATCTGAGGAACTCGCAGAAGCTAAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGACAAACAATCCTCATaGCTTCTTCACTGTCGGGGA +
Preference number: 5 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMADKQSS*LLHCRG
Trigger: TCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGTC...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGTGCTCCCAGGGGCTGTaGGTTTTTCACCAGACAAAC +
Preference number: 5 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMCSQGL*VFHQTN
Trigger: GTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGCA...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTTTCACTTCCACCAGTTaGTCTCCAGCATACAGCAAC +
Preference number: 5 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIFTSTS*SPAYSN
Trigger: GTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAA...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGCAAAATATGGATCACTaGCTCAGGGTCCAGGCCCTC +
Preference number: 5 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMQNMDH*LRVQAL
Trigger: GAGGGCCTGGACCCTGAGCAAGTGATCCATATTTTG...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAATGTGGCACAGCACTTaGAAAACAGCTGGGGTTACA +
Preference number: 5 (lower is better)
Translates to: KDFIVAVLMGQTLLFSMAMWHST*KTAGVT
Trigger: TGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACAT...TGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp CGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTCCGGATTTCAAATGTTTCCCTaGACACGTAGTGATACTCAC +
Preference number: 5 (lower is better)
Translates to: RSSNGSNTAVFNGSRYSGFQMFP*TRSDTH
Trigger: GTGAGTATCACTACGTGTCAAGGGAAACATTTGAAA...TCCGGAATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp TATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTACTGGCCACATGCATCTaGCAAGTTGTCATTCACAAT +
Preference number: 5 (lower is better)
Translates to: YSGSLGHTMKLPALSRTLLATCI*QVVIHN
Trigger: ATTGTGAATGACAACTTGCAAGATGCATGTGGCCAG...TAGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 90 bp GTCCTTAGCTTCTGCGAGTTCCTCAGATTCAAAAGTTTCTTCATCTaGTTCCACACACTTCTCATCAATCTTCATGCTGTCTTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: VLSFCEFLRFKSFFI*FHTLLINLHAVFFL
Trigger: GAGGAAGAAGACAGCATGAAGATTGATGAGAAGTGTGTGGAAGCAGATGAAGAAACTTTTGAATCTGAGGAACTCGCAGAAGCTAAGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
CDS-3UTR CAA 90 bp TATTCCGGATCTTTAGGGCACACTATGAAGCTTCCAGCTTTAAGCAGGACACTATTTCAAATGTTTCCCTaGACACGTAGTGATACTCAC +
Preference number: 5 (lower is better)
Translates to: YSGSLGHTMKLPALSRTLFQMFP*TRSDTH
Trigger: GTGAGTATCACTACGTGTCAAGGGAAACATTTGAAA...TAGTGTCCTGCTTAAAGCTGGAAGCTTCATAGTGTGCCCTAAAGATCCGGAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp ATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGGCAGCCGTTATTTTTCAAATGTTTCCCTaGACACGTAGTGATACTCAC +
Preference number: 5 (lower is better)
Translates to: IVAVLMGQTLLFSMAAVIFQMFP*TRSDTH
Trigger: GTGAGTATCACTACGTGTCAAGGGAAACATTTGAAA...AATAACGGCTGCCATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTCACTTCCACCAGTTaGTCTCCAGCATACAGCAAC +
Preference number: 5 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPFTSTS*SPAYSN
Trigger: GTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAA...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCAATGTGGCACAGCACTTaGAAAACAGCTGGGGTTACA +
Preference number: 5 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPMWHST*KTAGVT
Trigger: TGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACAT...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp AATAAGGACTTCATAGTCGCAGTTCTAATGGGTCAAACACTGCTGTTTTCAATGTTTCAAATGTTTCCCTaGACACGTAGTGATACTCAC +
Preference number: 5 (lower is better)
Translates to: NKDFIVAVLMGQTLLFSMFQMFP*TRSDTH
Trigger: GTGAGTATCACTACGTGTCAAGGGAAACATTTGAAA...CATTGAAAACAGCAGTGTTTGACCCATTAGAACTGCGACTATGAAGTCCTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS-3UTR CAA 90 bp TATGAAATCTATAAAATGCTCACATTCAGTGACAACATTGTCACATACCTGCCATTTCAAATGTTTCCCTaGACACGTAGTGATACTCAC +
Preference number: 5 (lower is better)
Translates to: YEIYKMLTFSDNIVTYLPFQMFP*TRSDTH
Trigger: GTGAGTATCACTACGTGTCAAGGGAAACATTTGAAA...TGGCAGGTATGTGACAATGTTGTCACTGAATGTGAGCATTTTATAGATTTCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CAA 72 bp ACGCCAGAAGGTCCCACAAGCACTATGAGGCGGTGTTaGTCCGCCGGCTGCCGCTGGTACCTCACCACCTCC +
Preference number: 6 (lower is better)
Translates to: TPEGPTSTMRRC*SAGCRWYLTTS
Trigger: GGAGGTGGTGAGGTACCAGCGGCAGCCGGCGGACAAACACCGCCTCATAGTGCTTGTGGGACCTTCTGGCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp CCAGCATCCATGCAGGGGATGTCGGGATCCATCTTCTaGCTGCTCACAGGCGGGGCAGAGACCGGAATCACC +
Preference number: 6 (lower is better)
Translates to: PASMQGMSGSIF*LLTGGAETGIT
Trigger: GGTGATTCCGGTCTCTGCCCCGCCTGTGAGCAGCCAGAAGATGGATCCCGACATCCCCTGCATGGATGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS CAA 90 bp TCAGGGTCCAGGCCCTCTACTGAAACTCCATTCACTTCCACCAGTTaGTCTCCAGCATACAGCAACCCGCTCCTCTCCACCAGCCCGCCA +
Preference number: 6 (lower is better)
Translates to: SGSRPSTETPFTSTS*SPAYSNPLLSTSPP
Trigger: TGGCGGGCTGGTGGAGAGGAGCGGGTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGACCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp CGCATGCTGCGGCGGAACCCAGCGATAAAGAACTTCTaGCCATCGCCGACAAATTCGTCCTTAGCTCGGGTG +
Preference number: 6 (lower is better)
Translates to: RMLRRNPAIKNF*PSPTNSSLARV
Trigger: CACCCGAGCTAAGGACGAATTTGTCGGCGATGGGCAGAAGTTCTTTATCGCTGGGTTCCGCCGCAGCATGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS CAA 72 bp TGTGCATGCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTT +
Preference number: 6 (lower is better)
Translates to: CACSGGFEAGVR*VRLRPPELPLL
Trigger: AAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCATGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS CAA 72 bp AGACAGTGCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTT +
Preference number: 6 (lower is better)
Translates to: RQCSGGFEAGVR*VRLRPPELPLL
Trigger: AAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCACTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
CDS CAA 72 bp GCTGTCTTCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTT +
Preference number: 6 (lower is better)
Translates to: AVFSGGFEAGVR*VRLRPPELPLL
Trigger: AAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGAAGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191200.7
CDS CAA 72 bp GTCCTTAGCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTT +
Preference number: 6 (lower is better)
Translates to: VLSSGGFEAGVR*VRLRPPELPLL
Trigger: AAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCTAAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS CAA 90 bp TTCCTCCATAGACAGTGCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTTCCTCTTCAG +
Preference number: 6 (lower is better)
Translates to: FLHRQCSGGFEAGVR*VRLRPPELPLLPLQ
Trigger: CTGAAGAGGAAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCACTGTCTATGGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
CDS GCA 72 bp CGCATGCTGCGGCGGAACCCAGCGATAAAGAACTTCTaGCCATCGCCGACAAATTCGTCCTTAGTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: RMLRRNPAIKNF*PSPTNSSLVSS
Trigger: GCTGGAGACTAAGGACGAATTTGTCGGCGATGGGCAGAAGTTCTTTATCGCTGGGTTCCGCCGCAGCATGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS GCA 72 bp CGCATGCTGCGGCGGAACCCAGCGATAAAGAACTTCTaGCCATCGCCGACAAATTCGTCCTTAGCTTCTGCG +
Preference number: 6 (lower is better)
Translates to: RMLRRNPAIKNF*PSPTNSSLASA
Trigger: CGCAGAAGCTAAGGACGAATTTGTCGGCGATGGGCAGAAGTTCTTTATCGCTGGGTTCCGCCGCAGCATGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CCA 72 bp GGATCCCAGAGAGACCATTCTCAGGATCAGGTGGCGTaGGAAGAGCTCTGTCCTCATTGGTCAGCTCTGCTC +
Preference number: 6 (lower is better)
Translates to: GSQRDHSQDQVA*EELCPHWSALL
Trigger: GAGCAGAGCTGACCAATGAGGACAGAGCTCTTCCCACGCCACCTGATCCTGAGAATGGTCTCTCTGGGATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp CCTCAGGATCCCAGAGAGACCATTCTCAGGATCAGGTaGCGTGGGAAGAGCTCTGTCCTCATTGGTCAGCTC +
Preference number: 6 (lower is better)
Translates to: PQDPRETILRIR*RGKSSVLIGQL
Trigger: GAGCTGACCAATGAGGACAGAGCTCTTCCCACGCCACCTGATCCTGAGAATGGTCTCTCTGGGATCCTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp CAGGATCAGGTGGCGTGGGAAGAGCTCTGTCCTCATTaGTCAGCTCTGCTCCTCTGTCAGACTGTCTCATCC +
Preference number: 6 (lower is better)
Translates to: QDQVAWEELCPH*SALLLCQTVSS
Trigger: GGATGAGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCTTCCCACGCCACCTGATCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS CAA 90 bp AGACCATTCTCAGGATCAGGTGGCGTGGGAAGAGCTCTGTCCTCATaGGTCAGCTCTGCTCCTCTGTCAGACTGTCTCATCCTCCCTGCT +
Preference number: 6 (lower is better)
Translates to: RPFSGSGGVGRALSS*VSSAPLSDCLILPA
Trigger: AGCAGGGAGGATGAGACAGTCTGACAGAGGAGCAGAGCTGACCAATGAGGACAGAGCTCTTCCCACGCCACCTGATCCTGAGAATGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS CAA 90 bp GACAAATTCGTCCTTAGCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTTCCTCTTCAG +
Preference number: 6 (lower is better)
Translates to: DKFVLSSGGFEAGVR*VRLRPPELPLLPLQ
Trigger: CTGAAGAGGAAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCTAAGGACGAATTTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186477.2
CDS GCA 72 bp CCAGCACAGATGGTGAGGTCTGAGATTTTCCGGGCCTaGCACCAGAGGGCATCATTCTGGTCCACAATCTGT +
Preference number: 6 (lower is better)
Translates to: PAQMVRSEIFRA*HQRASFWSTIC
Trigger: ACAGATTGTGGACCAGAATGATGCCCTCTGGTGGCAGGCCCGGAAAATCTCAGACCTCACCATCTGTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp CAGCTCTGCTCCTCTGTCAGACTGTCTCATCCTCCCTaGTGGAGGATTATCTGTAGCTGCTGCTGGTGCCTT +
Preference number: 6 (lower is better)
Translates to: QLCSSVRLSHPP*WRIICSCCWCL
Trigger: AAGGCACCAGCAGCAGCTACAGATAATCCTCCAGCAGGGAGGATGAGACAGTCTGACAGAGGAGCAGAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114275.9
CDS CCA 72 bp CTGGCACCCACTGCAGTTCTTCCTGAGCCTTCTGTATaGCGGACAACAGCTGGCCACATGCATCTTGCAAGT +
Preference number: 6 (lower is better)
Translates to: LAPTAVLPEPSV*RTTAGHMHLAS
Trigger: ACTTGCAAGATGCATGTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAGGAAGAACTGCAGTGGGTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 72 bp CAGCCCAGCATCCATGCAGGGGATGTCGGGATCCTCTaGGGGCCAGTAATCAATCATGGCGCGAACATAAAC +
Preference number: 6 (lower is better)
Translates to: QPSIHAGDVGIL*GPVINHGANIN
Trigger: GTTTATGTTCGCGCCATGATTGATTACTGGCCCCAAGAGGATCCCGACATCCCCTGCATGGATGCTGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CAA 90 bp CAGGAAAGGCAGCCCAGCATCCATGCAGGGGATGTCGGGATCCTCTaGGGGCCAGTAATCAATCATGGCGCGAACATAAACCATCTTCTG +
Preference number: 6 (lower is better)
Translates to: QERQPSIHAGDVGIL*GPVINHGANINHLL
Trigger: CAGAAGATGGTTTATGTTCGCGCCATGATTGATTACTGGCCCCAAGAGGATCCCGACATCCCCTGCATGGATGCTGGGCTGCCTTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CAA 90 bp ATTCTCAAATGTGCATGCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTTCCTCTTCAG +
Preference number: 6 (lower is better)
Translates to: ILKCACSGGFEAGVR*VRLRPPELPLLPLQ
Trigger: CTGAAGAGGAAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCATGCACATTTGAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS CAA 90 bp AGGACGGCGTGTACAGCGTTCACACTGGTTCCGTACAGGTGGCCCTaGTACTCACCATACTCCAGCATCTTGTGTCCGTACATGAGGCTT +
Preference number: 6 (lower is better)
Translates to: RTACTAFTLVPYRWP*YSPYSSILCPYMRL
Trigger: AAGCCTCATGTACGGACACAAGATGCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGGAACCAGTGTGAACGCTGTACACGCCGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 90 bp AATCTTCATGCTGTCTTCTCGGGTGGATTTGAGGCAGGTGTGAGGTaGGTACGGCTGAGACCACCAGAACTCCCGCTGCTTCCTCTTCAG +
Preference number: 6 (lower is better)
Translates to: NLHAVFSGGFEAGVR*VRLRPPELPLLPLQ
Trigger: CTGAAGAGGAAGCAGCGGGAGTTCTGGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGAAGACAGCATGAAGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191200.7
CDS TCA 72 bp ATGACCCTGGCCACCAGGATATCCCCTGTTATCTCATaGCGCTTGATGGTTGCTCCCAGGGGCTGTTGGTTT +
Preference number: 6 (lower is better)
Translates to: MTLATRISPVIS*RLMVAPRGCWF
Trigger: AAACCAACAGCCCCTGGGAGCAACCATCAAGCGTCATGAGATAACAGGGGATATCCTGGTGGCCAGGGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp TCTGAGCCACTGTGTCATGGGCACTCAGCAAGGCCTTaGAGTGAGGAGCCTGAAGGACTTGTCTTAGCTCTT +
Preference number: 6 (lower is better)
Translates to: SEPLCHGHSARP*SEEPEGLVLAL
Trigger: AAGAGCTAAGACAAGTCCTTCAGGCTCCTCACTGCAAGGCCTTGCTGAGTGCCCATGACACAGTGGCTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp ACGGCGTGTACAGCGTTCACACTGGTTCCGTACAGGTaGCCCTTGTACTCACCATACTCCAGCATCTTGTGT +
Preference number: 6 (lower is better)
Translates to: TACTAFTLVPYR*PLYSPYSSILC
Trigger: ACACAAGATGCTGGAGTATGGTGAGTACAAGGGCCACCTGTACGGAACCAGTGTGAACGCTGTACACGCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp TGCCTTCATCAAGGACGGCGTGTACAGCGTTCACACTaGTTCCGTACAGGTGGCCCTTGTACTCACCATACT +
Preference number: 6 (lower is better)
Translates to: CLHQGRRVQRSH*FRTGGPCTHHT
Trigger: AGTATGGTGAGTACAAGGGCCACCTGTACGGAACCAGTGTGAACGCTGTACACGCCGTCCTTGATGAAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 72 bp AGGCCCTCTACTGAAACTCCATTCACTTCCACCAGTTaGTCTCCAGCATACAGCAACCCGCTCCTCTCCACC +
Preference number: 6 (lower is better)
Translates to: RPSTETPFTSTS*SPAYSNPLLST
Trigger: GGTGGAGAGGAGCGGGTTGCTGTATGCTGGAGACAAACTGGTGGAAGTGAATGGAGTTTCAGTAGAGGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 72 bp TGTCTTCATTCTCAAATGTGCATGCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGTACGGCTGAGACCACC +
Preference number: 6 (lower is better)
Translates to: CLHSQMCMLGWI*GRCEVGTAETT
Trigger: GGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGCATGCACATTTGAGAATGAAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066374.14
CDS TCA 72 bp TCTCATCAATCTTCATGCTGTCTTCTCGGGTGGATTTaGGGCAGGTGTGAGGTTGGTACGGCTGAGACCACC +
Preference number: 6 (lower is better)
Translates to: SHQSSCCLLGWI*GRCEVGTAETT
Trigger: GGTGGTCTCAGCCGTACCAACCTCACACCTGCCTCAAATCCACCCGAGAAGACAGCATGAAGATTGATGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191200.7
CDS CCA 72 bp GTCTTAGCTCTTGGATCTCGGGGGAACCGGAAGCTTTaGGTAACAGCTCCAAGACCTCACAGGCTAAGATCT +
Preference number: 6 (lower is better)
Translates to: VLALGSRGNRKL*VTAPRPHRLRS
Trigger: AGATCTTAGCCTGTGAGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCCCCGAGATCCAAGAGCTAAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp GGATGTCGGGATCCTCTTGGGGCCAGTAATCAATCATaGCGCGAACATAAACCATCTTCTGGCTGCTCACAG +
Preference number: 6 (lower is better)
Translates to: GCRDPLGASNQS*REHKPSSGCSQ
Trigger: CTGTGAGCAGCCAGAAGATGGTTTATGTTCGCGCCATGATTGATTACTGGCCCCAAGAGGATCCCGACATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CAA 72 bp TGTCTTAGCTCTTGGATCTCGGGGGAACCGGAAGCTTaGGGTAACAGCTCCAAGACCTCACAGGCTAAGATC +
Preference number: 6 (lower is better)
Translates to: CLSSWISGEPEA*GNSSKTSQAKI
Trigger: GATCTTAGCCTGTGAGGTCTTGGAGCTGTTACCCAAAGCTTCCGGTTCCCCCGAGATCCAAGAGCTAAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 72 bp TGGCTGCTCACAGGCGGGGCAGAGACCGGAATCACCTaGAACATGATCGTACCACAAGACATAGCCAAAATA +
Preference number: 6 (lower is better)
Translates to: WLLTGGAETGIT*NMIVPQDIAKI
Trigger: TATTTTGGCTATGTCTTGTGGTACGATCATGTTCAAGGTGATTCCGGTCTCTGCCCCGCCTGTGAGCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 72 bp AATATGGATCACTTGCTCAGGGTCCAGGCCCTCTACTaGAACTCCATTCACTTCCACCAGTTTGTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: NMDHLLRVQALY*NSIHFHQFVSS
Trigger: GCTGGAGACAAACTGGTGGAAGTGAATGGAGTTTCAGTAGAGGGCCTGGACCCTGAGCAAGTGATCCATATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 72 bp TTCGAGCCGACTGAATATCCTGAGGCTCTAGATCCATaGTGCAGATCTTGCCTTCATCAAGGACGGCGTGTA +
Preference number: 6 (lower is better)
Translates to: FEPTEYPEALDP*CRSCLHQGRRV
Trigger: TACACGCCGTCCTTGATGAAGGCAAGATCTGCATCATGGATCTAGAGCCTCAGGATATTCAGTCGGCTCGAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp CTGAGCCTTCTGTATGGCGGACAACAGCTGGCCACATaGATCTTGCAAGTTGTCATTCACAATCACGTGATC +
Preference number: 6 (lower is better)
Translates to: LSLLYGGQQLAT*ILQVVIHNHVI
Trigger: GATCACGTGATTGTGAATGACAACTTGCAAGATGCATGTGGCCAGCTGTTGTCCGCCATACAGAAGGCTCAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 72 bp CTCTTTGGGAAACGGGTGGTATGTGGCACAGCACTTTaGAAACAGCTGGGGTTACATCCAATGAGCTGTCTT +
Preference number: 6 (lower is better)
Translates to: LFGKRVVCGTAL*KQLGLHPMSCL
Trigger: AAGACAGCTCATTGGATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp GGGCTGTTGGTTTTTCACCAGACAAACAATCCTCATTaGTTCTTCACTGTCGGGGATATTGTCTGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: GLLVFHQTNNPH*FFTVGDIVWQW
Trigger: CCACTGCCAGACAATATCCCCGACAGTGAAGAAGCAATGAGGATTGTTTGTCTGGTGAAAAACCAACAGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp ATCAATCTTCATGCTGTCTTCTTCCTCCATAGACAGTaGTCGGGTGGATTTGAGGCAGGTGTGAGGTTGGTA +
Preference number: 6 (lower is better)
Translates to: INLHAVFFLHRQ*SGGFEAGVRLV
Trigger: TACCAACCTCACACCTGCCTCAAATCCACCCGAGCACTGTCTATGGAGGAAGAAGACAGCATGAAGATTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
CDS CCA 72 bp CACGTCCATCCATTTCATAACTCTTTGGGAAACGGGTaGTATGTGGCACAGCACTTTGAAAACAGCTGGGGT +
Preference number: 6 (lower is better)
Translates to: HVHPFHNSLGNG*YVAQHFENSWG
Trigger: ACCCCAGCTGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGTTATGAAATGGATGGACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 72 bp ACTCTTTGGGAAACGGGTGGTATGTGGCACAGCACTTaGAAAACAGCTGGGGTTACATCCAATGAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: TLWETGGMWHST*KTAGVTSNELS
Trigger: AGACAGCTCATTGGATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS GCA 72 bp CTTCTGCCCATCGCCGACAAATTCGTCCTTAGCTTCTaGGAGTTCCTCAGATTCAAAAGTTTCTTCATCTGC +
Preference number: 6 (lower is better)
Translates to: LLPIADKFVLSF*EFLRFKSFFIC
Trigger: GCAGATGAAGAAACTTTTGAATCTGAGGAACTCGCAGAAGCTAAGGACGAATTTGTCGGCGATGGGCAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000191200.7
CDS CAA 72 bp TATCTCATGACGCTTGATGGTTGCTCCCAGGGGCTGTaGGTTTTTCACCAGACAAACAATCCTCATTGCTTC +
Preference number: 6 (lower is better)
Translates to: YLMTLDGCSQGL*VFHQTNNPHCF
Trigger: GAAGCAATGAGGATTGTTTGTCTGGTGAAAAACCAACAGCCCCTGGGAGCAACCATCAAGCGTCATGAGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 72 bp TACAGGTGGCCCTTGTACTCACCATACTCCAGCATCTaGTGTCCGTACATGAGGCTTTCAAATGTTTCCCTT +
Preference number: 6 (lower is better)
Translates to: YRWPLYSPYSSI*CPYMRLSNVSL
Trigger: AAGGGAAACATTTGAAAGCCTCATGTACGGACACAAGATGCTGGAGTATGGTGAGTACAAGGGCCACCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 90 bp CATTTCATAACTCTTTGGGAAACGGGTGGTATGTGGCACAGCACTTaGAAAACAGCTGGGGTTACATCCAATGAGCTGTCTTCTCAGTTC +
Preference number: 6 (lower is better)
Translates to: HFITLWETGGMWHST*KTAGVTSNELSSQF
Trigger: GAACTGAGAAGACAGCTCATTGGATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGTTATGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp TTGAACATGATCGTACCACAAGACATAGCCAAAATATaGATCACTTGCTCAGGGTCCAGGCCCTCTACTGAA +
Preference number: 6 (lower is better)
Translates to: LNMIVPQDIAKI*ITCSGSRPSTE
Trigger: TTCAGTAGAGGGCCTGGACCCTGAGCAAGTGATCCATATTTTGGCTATGTCTTGTGGTACGATCATGTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp ATCCATTTCATAACTCTTTGGGAAACGGGTGGTATGTaGCACAGCACTTTGAAAACAGCTGGGGTTACATCC +
Preference number: 6 (lower is better)
Translates to: IHFITLWETGGM*HSTLKTAGVTS
Trigger: GGATGTAACCCCAGCTGTTTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGTTATGAAATGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CAA 72 bp CGTAGTGATACTCACGTCCATCCATTTCATAACTCTTaGGGAAACGGGTGGTATGTGGCACAGCACTTTGAA +
Preference number: 6 (lower is better)
Translates to: RSDTHVHPFHNS*GNGWYVAQHFE
Trigger: TTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGTTATGAAATGGATGGACGTGAGTATCACTACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS CCA 72 bp GTAGTGATACTCACGTCCATCCATTTCATAACTCTTTaGGAAACGGGTGGTATGTGGCACAGCACTTTGAAA +
Preference number: 6 (lower is better)
Translates to: VVILTSIHFITL*ETGGMWHSTLK
Trigger: TTTCAAAGTGCTGTGCCACATACCACCCGTTTCCCAAAGAGTTATGAAATGGATGGACGTGAGTATCACTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 72 bp AACAGCTCCAAGACCTCACAGGCTAAGATCTGTGCATaGGTTGTATCAGGAACTAGCTTCTTCTCTTTAAAC +
Preference number: 6 (lower is better)
Translates to: NSSKTSQAKICA*VVSGTSFFSLN
Trigger: GTTTAAAGAGAAGAAGCTAGTTCCTGATACAACTCATGCACAGATCTTAGCCTGTGAGGTCTTGGAGCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7
CDS TCA 72 bp CTTGTGTCCGTACATGAGGCTTTCAAATGTTTCCCTTaGCACGTAGTGATACTCACGTCCATCCATTTCATA +
Preference number: 6 (lower is better)
Translates to: LVSVHEAFKCFP*HVVILTSIHFI
Trigger: TATGAAATGGATGGACGTGAGTATCACTACGTGTCAAGGGAAACATTTGAAAGCCTCATGTACGGACACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066374.14
ENSMUST00000078874.14
ENSMUST00000114275.9
ENSMUST00000186477.2
ENSMUST00000191200.7