Pregenerated sensors for MPO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009350Ensembl transcript IDs: ENSMUST00000020779.11, ENSMUST00000107930.3, ENSMUST00000121303.8, ENSMUST00000143021.9, ENSMUST00000146650.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCGGCATCTCGCTGGAGCGCATGTCCCCTTGAGGGGGAAGCAGGGTaGCTGCTGCAGGCAGCTGGTCTCGCAGTTGAGGCCAGTGAAGAA | + |
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Preference number: 1 (lower is better) Translates to: PASRWSACPLEGEAG*LLQAAGLAVEASEE Trigger: TTCTTCACTGGCCTCAACTGCGAGACCAGCTGCCTGCAGCAGCCACCCTGCTTCCCCCTCAAGGGGACATGCGCTCCAGCGAGATGCCGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR GCA 90 bp | CTCGCTGGAGCGCATGTCCCCTTGAGGGGGAAGCAGGGTGGCTGCTaGAGGCAGCTGGTCTCGCAGTTGAGGCCAGTGAAGAAGGAGAAC | + |
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Preference number: 1 (lower is better) Translates to: LAGAHVPLRGKQGGC*RQLVSQLRPVKKEN Trigger: GTTCTCCTTCTTCACTGGCCTCAACTGCGAGACCAGCTGCCTGCAGCAGCCACCCTGCTTCCCCCTCAAGGGGACATGCGCTCCAGCGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR GCA 90 bp | CATCTCGCTGGAGCGCATGTCCCCTTGAGGGGGAAGCAGGGTGGCTaGTGCAGGCAGCTGGTCTCGCAGTTGAGGCCAGTGAAGAAGGAG | + |
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Preference number: 1 (lower is better) Translates to: HLAGAHVPLRGKQGG*CRQLVSQLRPVKKE Trigger: CTCCTTCTTCACTGGCCTCAACTGCGAGACCAGCTGCCTGCAGCAGCCACCCTGCTTCCCCCTCAAGGGGACATGCGCTCCAGCGAGATG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR CAA 90 bp | TTGAGGGGGAAGCAGGGTGGCTGCTGCAGGCAGCTGGTCTCGCAGTaGAGGCCAGTGAAGAAGGAGAACCGGGTAGCTGGCTCTGGAGTC | + |
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Preference number: 2 (lower is better) Translates to: LRGKQGGCCRQLVSQ*RPVKKENRVAGSGV Trigger: GACTCCAGAGCCAGCTACCCGGTTCTCCTTCTTCACTGGCCTCAACTGCGAGACCAGCTGCCTGCAGCAGCCACCCTGCTTCCCCCTCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR CAA 90 bp | ACGATGGCATTGGAGACCTGGCGAGCCAGGGGCACCTTGAAGCCATaGCGATTGACTCCAGGCGTCCAGCCAAAGGGCATGGAGACGCCA | + |
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Preference number: 2 (lower is better) Translates to: TMALETWRARGTLKP*RLTPGVQPKGMETP Trigger: TGGCGTCTCCATGCCCTTTGGCTGGACGCCTGGAGTCAATCGCAATGGCTTCAAGGTGCCCCTGGCTCGCCAGGTCTCCAATGCCATCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR-3UTR CAA 90 bp | GAGGGTGTGCATGGAGGTGAGCTCCGGCATCTCGCTGGAGCGCATGTCCCCTTGTTGAAGCCATTGCGATaGACTCCAGGCGTCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: EGVHGGELRHLAGAHVPLLKPLR*TPGVQP Trigger: TGGCTGGACGCCTGGAGTCAATCGCAATGGCTTCAA...CAAGGGGACATGCGCTCCAGCGAGATGCCGGAGCTCACCTCCATGCACACCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR CCA 72 bp | GCAGTTGAGGCCAGTGAAGAAGGAGAACCGGGTAGCTaGCTCTGGAGTCAAGGTGATATCATGATCCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: AVEASEEGEPGS*LWSQGDIMIQK Trigger: TTTCTGGATCATGATATCACCTTGACTCCAGAGCCAGCTACCCGGTTCTCCTTCTTCACTGGCCTCAACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS-3UTR TCA 90 bp | GGGGAAGCGCACGATGGCATTGGAGACCTGGCGAGCCAGGGGCACCTTGAAGCCCCGCCACCGGCTGCTTaGAGTAAAACAGGAGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: GEAHDGIGDLASQGHLEAPPPAA*SKTGAP Trigger: CGGAGCTCCTGTTTTACTTCAAGCAGCCGGTGGCGG...GGCTTCAAGGTGCCCCTGGCTCGCCAGGTCTCCAATGCCATCGTGCGCTTCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS-3UTR GCA 90 bp | CTGATCGTTGGGGAAGCGCACGATGGCATTGGAGACCTGGCGAGCCAGGGGCACCTTGGCCACAGGGGCTaGAGCTTCCTCTTCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LIVGEAHDGIGDLASQGHLGHRG*SFLFSR Trigger: CCTGCTGAAGAGGAAGCTGCAGCCCCTGTGGCCAAG...GTGCCCCTGGCTCGCCAGGTCTCCAATGCCATCGTGCGCTTCCCCAACGATCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR CAA 72 bp | TTGGAGACCTGGCGAGCCAGGGGCACCTTGAAGCCATaGCGATTGACTCCAGGCGTCCAGCCAAAGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: LETWRARGTLKP*RLTPGVQPKGM Trigger: CATGCCCTTTGGCTGGACGCCTGGAGTCAATCGCAATGGCTTCAAGGTGCCCCTGGCTCGCCAGGTCTCCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| 3UTR CAA 72 bp | ACGATGGCATTGGAGACCTGGCGAGCCAGGGGCACCTaGAAGCCATTGCGATTGACTCCAGGCGTCCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: TMALETWRARGT*KPLRLTPGVQP Trigger: TGGCTGGACGCCTGGAGTCAATCGCAATGGCTTCAAGGTGCCCCTGGCTCGCCAGGTCTCCAATGCCATCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS-3UTR CCA 90 bp | CACGCTCCTGGTCCTTGGTCAGCTGATCGTTGGGGAAGCGCACGATGGCATTGGAAAACAGGAGCTCCGTaGGGCTGGCAGAGCCGCTTT | + |
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Preference number: 4 (lower is better) Translates to: HAPGPWSADRWGSARWHWKTGAP*GWQSRF Trigger: AAAGCGGCTCTGCCAGCCCCACGGAGCTCCTGTTTT...CCAATGCCATCGTGCGCTTCCCCAACGATCAGCTGACCAAGGACCAGGAGCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS-3UTR CCA 90 bp | TGGCGAGCCAGGGGCACCTTGAAGCCATTGCGATTGACTCCAGGCGTCCAGCCAAACATTGAAAGGCCTTaGCCACAGGGGCTGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: WRARGTLKPLRLTPGVQPNIERP*PQGLQL Trigger: AAGCTGCAGCCCCTGTGGCCAAGGCCTTTCAATGTT...TGGCTGGACGCCTGGAGTCAATCGCAATGGCTTCAAGGTGCCCCTGGCTCGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS-3UTR CCA 90 bp | AGTGAAGAAGGAGAACCGGGTAGCTGGCTCTGGAGTCAAGGTGATATCATGATCGGAGCTCCGTGGGGCTaGCAGAGCCGCTTTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: SEEGEPGSWLWSQGDIMIGAPWG*QSRFGG Trigger: GCCTCCAAAGCGGCTCTGCCAGCCCCACGGAGCTCC...GATCATGATATCACCTTGACTCCAGAGCCAGCTACCCGGTTCTCCTTCTTCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS-3UTR CCA 90 bp | ATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACCCAACCGGGGCAAGGAGATGCTaGCCAAGGCCTGTCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: IPTSQPGIPFSVPSPYPTGARRC*PRPVSA Trigger: AGCAGAGACAGGCCTTGGCCAGCATCTCCTTGCCCC...GGTTGGGTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR GCA 90 bp | TCTGTGATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACTACGGGGCAAGGAGATaGTGGCCAAGGCCTGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SVIPTSQPGIPFSVPSPYYGARR*WPRPVS Trigger: AGAGACAGGCCTTGGCCAGCATCTCCTTGCCCCGTA...GTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAATCACAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR TCA 90 bp | CCCCCACTGTCACCCACAATATCCACAAAGATGGATTCACCCAGGGAAGAGAGTGTCTCTGCTGTTTACTaGACACGCCTGGGTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: PPLSPTISTKMDSPREESVSAVY*TRLGSP Trigger: GGGAGAACCCAGGCGTGTTCAGTAAACAGCAGAGAC...ACTCTCTTCCCTGGGTGAATCCATCTTTGTGGATATTGTGGGTGACAGTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR TCA 90 bp | ATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACCCAACCTCTTCGACACGGTGGTaGTGCCAGTGTTGTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: IPTSQPGIPFSVPSPYPTSSTRW*CQCCHR Trigger: TCTGTGACAACACTGGCATCACCACCGTGTCGAAGA...GGTTGGGTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR GCA 90 bp | ATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACCCAACCTGCCATCAGCTTCCGTaGCAACTCCAGGTTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: IPTSQPGIPFSVPSPYPTCHQLP*QLQVLQ Trigger: CTGAAGAACCTGGAGTTGGCACGGAAGCTGATGGCA...GGTTGGGTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR GCA 90 bp | CCCCCACTGTCACCCACAATATCCACAAAGATGGATTCACCCAGGGAAGAGAGTGGGCGTGCCATATTGTaGCATCAGCTTCCGTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: PPLSPTISTKMDSPREESGRAIL*HQLPCQ Trigger: TTGGCACGGAAGCTGATGGCACAATATGGCACGCCC...ACTCTCTTCCCTGGGTGAATCCATCTTTGTGGATATTGTGGGTGACAGTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR TCA 90 bp | CCCCCACTGTCACCCACAATATCCACAAAGATGGATTCACCCAGGGAAGAGAGTCAGTGTTGTCACAGATaGTACGGGGCAAGGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: PPLSPTISTKMDSPREESQCCHR*YGARRC Trigger: GCATCTCCTTGCCCCGTATCATCTGTGACAACACTG...ACTCTCTTCCCTGGGTGAATCCATCTTTGTGGATATTGTGGGTGACAGTGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR CCA 90 bp | TCTGTGATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACTTTACTGAACACGCCTaGGTTCTCCCACCAAAACCG | + |
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Preference number: 4 (lower is better) Translates to: SVIPTSQPGIPFSVPSPYFTEHA*VLPPKP Trigger: CGGTTTTGGTGGGAGAACCCAGGCGTGTTCAGTAAA...GTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAATCACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR GCA 90 bp | TCTGTGATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACCAATGTTGTTGGGCGTaGCATATTGTGCCATCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SVIPTSQPGIPFSVPSPYQCCWA*HIVPSA Trigger: AGCTGATGGCACAATATGGCACGCCCAACAACATTG...GTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAATCACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS TCA 90 bp | AATCAGCGGCCCTCACAGCTGTTCTGGTGCCCGCCACCGGCTGCTTaGAGTAAAACAGGAGCTCCGTGGGGCTGGCAGAGCCGCTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: NQRPSQLFWCPPPAA*SKTGAPWGWQSRFG Trigger: TCCAAAGCGGCTCTGCCAGCCCCACGGAGCTCCTGTTTTACTTCAAGCAGCCGGTGGCGGGCACCAGAACAGCTGTGAGGGCCGCTGATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020779.11 ENSMUST00000107930.3 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS TCA 90 bp | ACAGGAGCTCCGTGGGGCTGGCAGAGCCGCTTTGGAGGCTCCGCTTaGTGCTTTCTCTCCGCTCCTTGTAGGCTCTGTCCACTAGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TGAPWGWQSRFGGSA*CFLSAPCRLCPLAA Trigger: AGCAGCTAGTGGACAGAGCCTACAAGGAGCGGAGAGAAAGCATCAAGCGGAGCCTCCAAAGCGGCTCTGCCAGCCCCACGGAGCTCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS CCA 90 bp | CAGGTTCTTCAGCACCGTGCCGAGCTCACCCACTGTGCTGGGCTGTaGAAGCCCACAAAAGCGTCTCCAGGCATTGTATCCTGGGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: QVLQHRAELTHCAGL*KPTKASPGIVSWEA Trigger: GGCCTCCCAGGATACAATGCCTGGAGACGCTTTTGTGGGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS GCA 90 bp | GTGCCAACTCCAGGTTCTTCAGCACCGTGCCGAGCTCACCCACTGTaGTGGGCTGTGGAAGCCCACAAAAGCGTCTCCAGGCATTGTATC | + |
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Preference number: 5 (lower is better) Translates to: VPTPGSSAPCRAHPL*WAVEAHKSVSRHCI Trigger: GATACAATGCCTGGAGACGCTTTTGTGGGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTGGAGTTGGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS GCA 90 bp | ATTGTGCCATCAGCTTCCGTGCCAACTCCAGGTTCTTCAGCACCGTaGCGAGCTCACCCACTGTGCTGGGCTGTGGAAGCCCACAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: IVPSASVPTPGSSAP*RAHPLCWAVEAHKS Trigger: GCTTTTGTGGGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTGGAGTTGGCACGGAAGCTGATGGCACAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS CCA 90 bp | CGCCATCTTCATACTCTGCAGGCAACCAGCGTACAAAGGCACGGTTaGAGGCCCCCAGAGTGGGGCTTCGTCTGTTGTTGCAGTGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: RHLHTLQATSVQRHG*RPPEWGFVCCCSVQ Trigger: CTGGACACTGCAACAACAGACGAAGCCCCACTCTGGGGGCCTCCAACCGTGCCTTTGTACGCTGGTTGCCTGCAGAGTATGAAGATGGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS CCA 90 bp | CCAACTCCAGGTTCTTCAGCACCGTGCCGAGCTCACCCACTGTGCTaGGCTGTGGAAGCCCACAAAAGCGTCTCCAGGCATTGTATCCTG | + |
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Preference number: 5 (lower is better) Translates to: PTPGSSAPCRAHPLC*AVEAHKSVSRHCIL Trigger: CAGGATACAATGCCTGGAGACGCTTTTGTGGGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTGGAGTTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS-3UTR CAA 90 bp | GGTCAGCTGATCGTTGGGGAAGCGCACGATGGCATTGGAGACCTGGCGAGCCAGAACACATCTGTAACATaGAAAGGCCTTGGCCACAGG | + |
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Preference number: 5 (lower is better) Translates to: GQLIVGEAHDGIGDLASQNTSVT*KGLGHR Trigger: CCTGTGGCCAAGGCCTTTCAATGTTACAGATGTGTT...CTGGCTCGCCAGGTCTCCAATGCCATCGTGCGCTTCCCCAACGATCAGCTGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107930.3 |
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| CDS TCA 90 bp | GGGTTCTCCCACCAAAACCGATCACCATCACGTAGCTTCCTAAACTaGGTGCCAATGAGGCAGGCAAGGAGCTGGCCTACACGGCCATTG | + |
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Preference number: 5 (lower is better) Translates to: GFSHQNRSPSRSFLN*VPMRQARSWPTRPL Trigger: CAATGGCCGTGTAGGCCAGCTCCTTGCCTGCCTCATTGGCACTCAGTTTAGGAAGCTACGTGATGGTGATCGGTTTTGGTGGGAGAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS TCA 90 bp | TACGGGGCAAGGAGATGCTGGCCAAGGCCTGTCTCTGCTGTTTACTaGACACGCCTGGGTTCTCCCACCAAAACCGATCACCATCACGTA | + |
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Preference number: 5 (lower is better) Translates to: YGARRCWPRPVSAVY*TRLGSPTKTDHHHV Trigger: TACGTGATGGTGATCGGTTTTGGTGGGAGAACCCAGGCGTGTTCAGTAAACAGCAGAGACAGGCCTTGGCCAGCATCTCCTTGCCCCGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS GCA 90 bp | TCACAGATGATACGGGGCAAGGAGATGCTGGCCAAGGCCTGTCTCTaGTGTTTACTGAACACGCCTGGGTTCTCCCACCAAAACCGATCA | + |
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Preference number: 5 (lower is better) Translates to: SQMIRGKEMLAKACL*CLLNTPGFSHQNRS Trigger: TGATCGGTTTTGGTGGGAGAACCCAGGCGTGTTCAGTAAACAGCAGAGACAGGCCTTGGCCAGCATCTCCTTGCCCCGTATCATCTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS-3UTR CAA 90 bp | CCCCCACTGTCACCCACAATATCCACAAAGATGGATTCACCCAGGGAAGAGAGTGTTGGGCGTGCCATATaGTGCCATCAGCTTCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: PPLSPTISTKMDSPREESVGRAI*CHQLPC Trigger: GCACGGAAGCTGATGGCACAATATGGCACGCCCAAC...ACTCTCTTCCCTGGGTGAATCCATCTTTGTGGATATTGTGGGTGACAGTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR CAA 90 bp | ATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACCCAACCTCTCGGGGGTATGTGTaGGACATGAAGATGTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: IPTSQPGIPFSVPSPYPTSRGYV*DMKMLF Trigger: GAACAACATCTTCATGTCCAACACATACCCCCGAGA...GGTTGGGTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS-3UTR CAA 90 bp | TCTGTGATTCCCACTAGCCAACCAGGTATACCCTTCAGTGTGCCAAGCCCTTACTTGGACATGAAGATGTaGTTCTTCGACACGGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: SVIPTSQPGIPFSVPSPYLDMKM*FFDTVV Trigger: CACCACCGTGTCGAAGAACAACATCTTCATGTCCAA...GTAAGGGCTTGGCACACTGAAGGGTATACCTGGTTGGCTAGTGGGAATCACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146650.2 |
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| CDS CAA 72 bp | CCAATGAGGCAGGCAAGGAGCTGGCCTACACGGCCATaGGGCTCCAGGGGCTCGGACACACCGCCCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: PMRQARSWPTRP*GSRGSDTPPIQ Trigger: CTGGATGGGCGGTGTGTCCGAGCCCCTGGAGCCCAATGGCCGTGTAGGCCAGCTCCTTGCCTGCCTCATTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS TCA 72 bp | CCCTCACAGCTGTTCTGGTGCCCGCCACCGGCTGCTTaGAGTAAAACAGGAGCTCCGTGGGGCTGGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: PSQLFWCPPPAA*SKTGAPWGWQS Trigger: GCTCTGCCAGCCCCACGGAGCTCCTGTTTTACTTCAAGCAGCCGGTGGCGGGCACCAGAACAGCTGTGAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020779.11 ENSMUST00000107930.3 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS TCA 72 bp | CCGTGGGGCTGGCAGAGCCGCTTTGGAGGCTCCGCTTaGTGCTTTCTCTCCGCTCCTTGTAGGCTCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PWGWQSRFGGSA*CFLSAPCRLCP Trigger: TGGACAGAGCCTACAAGGAGCGGAGAGAAAGCATCAAGCGGAGCCTCCAAAGCGGCTCTGCCAGCCCCACGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS GCA 72 bp | CCAGGTTCTTCAGCACCGTGCCGAGCTCACCCACTGTaGTGGGCTGTGGAAGCCCACAAAAGCGTCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PGSSAPCRAHPL*WAVEAHKSVSR Trigger: CCTGGAGACGCTTTTGTGGGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS GCA 72 bp | TCAGCTTCCGTGCCAACTCCAGGTTCTTCAGCACCGTaGCGAGCTCACCCACTGTGCTGGGCTGTGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: SASVPTPGSSAP*RAHPLCWAVEA Trigger: GGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTGGAGTTGGCACGGAAGCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS CCA 72 bp | GGTTCTTCAGCACCGTGCCGAGCTCACCCACTGTGCTaGGCTGTGGAAGCCCACAAAAGCGTCTCCAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: GSSAPCRAHPLC*AVEAHKSVSRH Trigger: ATGCCTGGAGACGCTTTTGTGGGCTTCCACAGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS CCA 72 bp | CAACTGAATTCTCCACTTCCCCCAGGAGAGCTGGGGTaGCACCATTGGAGGTCTGAAGCATGGCCAGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: QLNSPLPPGELG*HHWRSEAWPEG Trigger: CCCCTCTGGCCATGCTTCAGACCTCCAATGGTGCCACCCCAGCTCTCCTGGGGGAAGTGGAGAATTCAGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS CCA 72 bp | CATACTCTGCAGGCAACCAGCGTACAAAGGCACGGTTaGAGGCCCCCAGAGTGGGGCTTCGTCTGTTGTTGC | + |
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Preference number: 6 (lower is better) Translates to: HTLQATSVQRHG*RPPEWGFVCCC Trigger: GCAACAACAGACGAAGCCCCACTCTGGGGGCCTCCAACCGTGCCTTTGTACGCTGGTTGCCTGCAGAGTATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS CAA 90 bp | TTGGGCTCCAGGGGCTCGGACACACCGCCCATCCAGATGTCAATGTaGTTGGGCGTGCCATATTGTGCCATCAGCTTCCGTGCCAACTCC | + |
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Preference number: 6 (lower is better) Translates to: LGSRGSDTPPIQMSM*LGVPYCAISFRANS Trigger: GGAGTTGGCACGGAAGCTGATGGCACAATATGGCACGCCCAACAACATTGACATCTGGATGGGCGGTGTGTCCGAGCCCCTGGAGCCCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS CAA 90 bp | ACGCCATCTTCATACTCTGCAGGCAACCAGCGTACAAAGGCACGGTaGGAGGCCCCCAGAGTGGGGCTTCGTCTGTTGTTGCAGTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: TPSSYSAGNQRTKAR*EAPRVGLRLLLQCP Trigger: TGGACACTGCAACAACAGACGAAGCCCCACTCTGGGGGCCTCCAACCGTGCCTTTGTACGCTGGTTGCCTGCAGAGTATGAAGATGGCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS GCA 72 bp | CCAGCCAAAGGGCATGGAGACGCCATCTTCATACTCTaGAGGCAACCAGCGTACAAAGGCACGGTTGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: PAKGHGDAIFIL*RQPAYKGTVGG Trigger: GCCTCCAACCGTGCCTTTGTACGCTGGTTGCCTGCAGAGTATGAAGATGGCGTCTCCATGCCCTTTGGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS GCA 72 bp | ATACGGGGCAAGGAGATGCTGGCCAAGGCCTGTCTCTaGTGTTTACTGAACACGCCTGGGTTCTCCCACCAA | + |
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Preference number: 6 (lower is better) Translates to: IRGKEMLAKACL*CLLNTPGFSHQ Trigger: TTGGTGGGAGAACCCAGGCGTGTTCAGTAAACAGCAGAGACAGGCCTTGGCCAGCATCTCCTTGCCCCGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS CCA 72 bp | GCAGTGTCCAGTGATGGTGCGATACTTGTCATTCGGTaGGCATGTCACCCTCACGTCCTGATAGGCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: AVSSDGAILVIR*ACHPHVLIGTA Trigger: GGCTGTGCCTATCAGGACGTGAGGGTGACATGCCCACCGAATGACAAGTATCGCACCATCACTGGACACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000020779.11 ENSMUST00000107930.3 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS CCA 72 bp | CGTTGTAAGATCGGTACTGGGGTAGGTACTTCTTCATaGCTGCTGGCCCCAACACCAAGGGCAGGTAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: RCKIGTGVGTSS*LLAPTPRAGSP Trigger: GGGACTACCTGCCCTTGGTGTTGGGGCCAGCAGCCATGAAGAAGTACCTACCCCAGTACCGATCTTACAACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS TCA 72 bp | AGGAGATGCTGGCCAAGGCCTGTCTCTGCTGTTTACTaGACACGCCTGGGTTCTCCCACCAAAACCGATCAC | + |
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Preference number: 6 (lower is better) Translates to: RRCWPRPVSAVY*TRLGSPTKTDH Trigger: GTGATCGGTTTTGGTGGGAGAACCCAGGCGTGTTCAGTAAACAGCAGAGACAGGCCTTGGCCAGCATCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS GCA 72 bp | ACATCTGTAACATTGAAAGGCCTTGGCCACAGGGGCTaGAGCTTCCTCTTCAGCAGGTCTAGGGCCACATGT | + |
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Preference number: 6 (lower is better) Translates to: TSVTLKGLGHRG*SFLFSRSRATC Trigger: ACATGTGGCCCTAGACCTGCTGAAGAGGAAGCTGCAGCCCCTGTGGCCAAGGCCTTTCAATGTTACAGATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020779.11 ENSMUST00000107930.3 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS CCA 72 bp | CTCTCCGCTCCTTGTAGGCTCTGTCCACTAGCTGCTTaGCCTCTTCCATACAGCTCAGCACAACTGAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LSAPCRLCPLAA*PLPYSSAQLNS Trigger: AGAATTCAGTTGTGCTGAGCTGTATGGAAGAGGCCAAGCAGCTAGTGGACAGAGCCTACAAGGAGCGGAGAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000143021.9 |
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| CDS TCA 72 bp | TCAAATAGTCGCTCCCGGATCTCATCCACCACAATTTaGTTCTGGCGATTCAGTTTGGCTGGAGTGGCCATG | + |
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Preference number: 6 (lower is better) Translates to: SNSRSRISSTTI*FWRFSLAGVAM Trigger: CATGGCCACTCCAGCCAAACTGAATCGCCAGAATCAAATTGTGGTGGATGAGATCCGGGAGCGACTATTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS CAA 90 bp | AGTTTAGGAAGGGTGTTACAGCTGACAAAGTCTCGGGGGTATGTGTaGGACATGAAGATGTTGTTCTTCGACACGGTGGTGATGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SLGRVLQLTKSRGYV*DMKMLFFDTVVMPV Trigger: CACTGGCATCACCACCGTGTCGAAGAACAACATCTTCATGTCCAACACATACCCCCGAGACTTTGTCAGCTGTAACACCCTTCCTAAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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| CDS GCA 72 bp | TTAAGAGCAGGCAAATCCAGTCCTATCCTCATGACTTaGTCAAATAGTCGCTCCCGGATCTCATCCACCACA | + |
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Preference number: 6 (lower is better) Translates to: LRAGKSSPILMT*SNSRSRISSTT Trigger: TGTGGTGGATGAGATCCGGGAGCGACTATTTGAGCAAGTCATGAGGATAGGACTGGATTTGCCTGCTCTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 |
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| CDS CAA 72 bp | ACAAAGTCTCGGGGGTATGTGTTGGACATGAAGATGTaGTTCTTCGACACGGTGGTGATGCCAGTGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: TKSRGYVLDMKM*FFDTVVMPVLS Trigger: TGACAACACTGGCATCACCACCGTGTCGAAGAACAACATCTTCATGTCCAACACATACCCCCGAGACTTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020779.11 ENSMUST00000121303.8 ENSMUST00000146650.2 |
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