RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MPEG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046805

Ensembl transcript IDs: ENSMUST00000081035.9

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATGGAATTTGTATAAACCCCACCCGCTTCTCCTTCAAATGCCTGTaGGGTGACTCATGGGGAGGGCACTGTCAATCAACACCAAGTCCT +
Preference number: 1 (lower is better)
Translates to: NGICINPTRFSFKCL*GDSWGGHCQSTPSP
Trigger: AGGACTTGGTGTTGATTGACAGTGCCCTCCCCATGAGTCACCTCACAGGCATTTGAAGGAGAAGCGGGTGGGGTTTATACAAATTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR GCA 90 bp CAAATGGCTCCTTTAATTTCCTGGTGCAGAGGCCTAAGAAAATACTaGCAGGGTTGTAATAGCTGCTTTCTTCCTATGGCGACTGTCACT +
Preference number: 1 (lower is better)
Translates to: QMAPLISWCRGLRKY*QGCNSCFLPMATVT
Trigger: AGTGACAGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGGAGCCATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR GCA 90 bp CCTCTTCAGCTTACAAACTGGAAAGCCTTTCAAATTCAGACTAAATaGACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATG +
Preference number: 1 (lower is better)
Translates to: PLQLTNWKAFQIQTK*TKSNFSPTPRSTHM
Trigger: CATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGTCTGAATTTGAAAGGCTTTCCAGTTTGTAAGCTGAAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 90 bp CAATCACGAGGCCTTCCAGATAACCCATGGAAGCCATCCTGGAACTaGAATACATATCATGGCCTTTTCCCAGCTAACTGTGACATAAAT +
Preference number: 1 (lower is better)
Translates to: QSRGLPDNPWKPSWN*NTYHGLFPANCDIN
Trigger: ATTTATGTCACAGTTAGCTGGGAAAAGGCCATGATATGTATTTCAGTTCCAGGATGGCTTCCATGGGTTATCTGGAAGGCCTCGTGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 90 bp AGACAAGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTTTaGCACATGAACGTGAAACCATACTGCTTGATCTGCCAAACTAGA +
Preference number: 1 (lower is better)
Translates to: RQGERLSRERKELHF*HMNVKPYCLICQTR
Trigger: TCTAGTTTGGCAGATCAAGCAGTATGGTTTCACGTTCATGTGTCAAAAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCTTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 90 bp GCTGTAGAGGAATTTCCGTGTTGTAGAGAATTAAATTCTCAGATATaGAAATTGAGCAATACCCCAACTATTGCCAGTTGTCAATCACGA +
Preference number: 1 (lower is better)
Translates to: AVEEFPCCRELNSQI*KLSNTPTIASCQSR
Trigger: TCGTGATTGACAACTGGCAATAGTTGGGGTATTGCTCAATTTTCATATCTGAGAATTTAATTCTCTACAACACGGAAATTCCTCTACAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 90 bp AAAAATTCAACAGGAAGTTTCTGCATTAAAGATCTGGGAGTCTTCTaGTGTGCCTTGCTTTGCAGATTCAGAGAATTTACAGAAAGAAGT +
Preference number: 1 (lower is better)
Translates to: KNSTGSFCIKDLGVF*CALLCRFREFTERS
Trigger: ACTTCTTTCTGTAAATTCTCTGAATCTGCAAAGCAAGGCACATCAGAAGACTCCCAGATCTTTAATGCAGAAACTTCCTGTTGAATTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CAA 90 bp CGCTCAAGAGGCAGGTTCGATGGAGAGGTTGTGCAATTAGCCCTCTaGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCAT +
Preference number: 2 (lower is better)
Translates to: RSRGRFDGEVVQLAL*AGQVVGQNSNSVIH
Trigger: ATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGCACAACCTCTCCATCGAACCTGCCTCTTGAGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR TCA 90 bp TGTGGTAAGAAGACAAGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTCAAATGCCTGTGAGGTaGCTCATGGGGAGGGCACTG +
Preference number: 2 (lower is better)
Translates to: CGKKTRGKTVQREEGVTFQMPVR*LMGRAL
Trigger: CAGTGCCCTCCCCATGAGTCACCTCACAGGCATTTG...AAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCTTGTCTTCTTACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR TCA 90 bp ACACTTGGAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTTGATTGTAAGAGCAAAAGATGTGCTTaGAGCTGTGGCTGGAAACTG +
Preference number: 2 (lower is better)
Translates to: TLGALQEGLLCAQELDCKSKRCA*SCGWKL
Trigger: CAGTTTCCAGCCACAGCTTCAAGCACATCTTTTGCT...CTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR CCA 90 bp ACTAAATGCACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATGCATGCTGCTTTCTTCCTATaGCGACTGTCACTTCAGTCA +
Preference number: 2 (lower is better)
Translates to: TKCTKSNFSPTPRSTHMHAAFFL*RLSLQS
Trigger: TGACTGAAGTGACAGTCGCCATAGGAAGAAAGCAGC...ATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR TCA 90 bp GCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCATTCCCTCAGATATGAAAATTaGGCAATACCCCAACTATTG +
Preference number: 2 (lower is better)
Translates to: ALLAGQVVGQNSNSVIHSLRYEN*AIPQLL
Trigger: CAATAGTTGGGGTATTGCTCAATTTTCATATCTGAG...GGAATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR GCA 90 bp ACTAAATGCACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATGCATCAGGGTTGTAATAGCTaGTTTCTTCCTATGGCGACT +
Preference number: 2 (lower is better)
Translates to: TKCTKSNFSPTPRSTHMHQGCNS*FLPMAT
Trigger: AGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTG...ATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR GCA 90 bp GCAATTAGCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATCCTTTAATTTCCTGGTaGAGAGGCCTAAGAAAATAC +
Preference number: 2 (lower is better)
Translates to: AISPLGWAGGRAEFQFSHPLISW*RGLRKY
Trigger: GTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGG...ATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CAA 90 bp AGACACTTGGAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTaGATTGTAACTAGTATTTTCAGAAAGATGGCTGGCTTCAATGAA +
Preference number: 2 (lower is better)
Translates to: RHLELFRRAYSVHKS*IVTSIFRKMAGFNE
Trigger: TTCATTGAAGCCAGCCATCTTTCTGAAAATACTAGTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR TCA 90 bp ACACTTGGAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTTGATTGTAAGAAGGAGTTACATTTTTaGCACATGAACGTGAAACCA +
Preference number: 2 (lower is better)
Translates to: TLGALQEGLLCAQELDCKKELHF*HMNVKP
Trigger: TGGTTTCACGTTCATGTGTCAAAAATGTAACTCCTT...CTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR GCA 90 bp TGTGGTAAGAAGACAAGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTCTCGTTCCACACACATaGATTCAGGTACAGACAACT +
Preference number: 2 (lower is better)
Translates to: CGKKTRGKTVQREEGVTFLVPHT*IQVQTT
Trigger: AGTTGTCTGTACCTGAATGCATGTGTGTGGAACGAG...AAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCTTGTCTTCTTACCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR CCA 90 bp TCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTTACATGTGCTTGAAGCTGTaGCTGGAAACTGTTTCCTTT +
Preference number: 2 (lower is better)
Translates to: SLSPEPRFLALIYYSFPYMCLKL*LETVSF
Trigger: AAAGGAAACAGTTTCCAGCCACAGCTTCAAGCACAT...GTAAGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR CCA 90 bp CTCTCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTCTTCAGCTTACAAACTaGAAAGCCTTTCAAATTCAG +
Preference number: 2 (lower is better)
Translates to: LSLSPEPRFLALIYYSFPLQLTN*KAFQIQ
Trigger: CTGAATTTGAAAGGCTTTCCAGTTTGTAAGCTGAAG...AGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp AAACCCCACCCGCTTCTCCTTCAAATGCCTGTGAGGTaGCTCATGGGGAGGGCACTGTCAATCAACACCAAG +
Preference number: 3 (lower is better)
Translates to: KPHPLLLQMPVR*LMGRALSINTK
Trigger: CTTGGTGTTGATTGACAGTGCCCTCCCCATGAGTCACCTCACAGGCATTTGAAGGAGAAGCGGGTGGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp AAACGAATGAGGAAGTCTCTCCCTGTTCCTGAAGGCTaGGACACTTGGAGCTCTTCAGGAGGGCCTACTCTG +
Preference number: 3 (lower is better)
Translates to: KRMRKSLPVPEG*DTWSSSGGPTL
Trigger: CAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGTCTCAGCCTTCAGGAACAGGGAGAGACTTCCTCATTCGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp CAAATGGAAACGAATGAGGAAGTCTCTCCCTGTTCCTaGAGGCTGAGACACTTGGAGCTCTTCAGGAGGGCC +
Preference number: 3 (lower is better)
Translates to: QMETNEEVSPCS*RLRHLELFRRA
Trigger: GGCCCTCCTGAAGAGCTCCAAGTGTCTCAGCCTTCAGGAACAGGGAGAGACTTCCTCATTCGTTTCCATTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp TCAGAGAATTTACAGAAAGAAGTCTCTCCCCGTTCCTaGAGGCTGAGACACTTGGAGCTCTTCAGGAGGGCC +
Preference number: 3 (lower is better)
Translates to: SENLQKEVSPRS*RLRHLELFRRA
Trigger: GGCCCTCCTGAAGAGCTCCAAGTGTCTCAGCCTTCAGGAACGGGGAGAGACTTCTTTCTGTAAATTCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp CCCAGGACTTGTTTGCACAGTTCAGAAGCCCAAGACTaGCCTAGATTAGCTGTGAGGAAGTTGGGAAATGGA +
Preference number: 3 (lower is better)
Translates to: PRTCLHSSEAQD*PRLAVRKLGNG
Trigger: TCCATTTCCCAACTTCCTCACAGCTAATCTAGGTCAGTCTTGGGCTTCTGAACTGTGCAAACAAGTCCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR GCA 72 bp AATCCAATTTCTCCCCCACCCCTCGTTCCACACACATaGATTCAGGTACAGACAACTATGAGAATGGACGCA +
Preference number: 3 (lower is better)
Translates to: NPISPPPLVPHT*IQVQTTMRMDA
Trigger: TGCGTCCATTCTCATAGTTGTCTGTACCTGAATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CCA 72 bp CCCCACACCTCACTTCAAATGGCTCCTTTAATTTCCTaGTGCAGAGGCCTAAGAAAATACTGCCAGGGTTGT +
Preference number: 3 (lower is better)
Translates to: PHTSLQMAPLIS*CRGLRKYCQGC
Trigger: ACAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGGAGCCATTTGAAGTGAGGTGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR CAA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACAAAGCAAAAGATGTGCTaGAAGCTGTGGCTGGAAACT +
Preference number: 3 (lower is better)
Translates to: LWHFRALFTETLRASLKTKQKMC*KLWLET
Trigger: AGTTTCCAGCCACAGCTTCAAGCACATCTTTTGCTT...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp TGTAGGCCTCCTGTGGCATTTCAGGGCACTGTTTACTaGAACCCTGAGGGCCTCTTTGAAAACACAAGAAAA +
Preference number: 3 (lower is better)
Translates to: CRPPVAFQGTVY*NPEGLFENTRK
Trigger: TTTTCTTGTGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAGGAGGCCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp GGCCTTCCAGATAACCCATGGAAGCCATCCTGGAACTaGAATACATATCATGGCCTTTTCCCAGCTAACTGT +
Preference number: 3 (lower is better)
Translates to: GLPDNPWKPSWN*NTYHGLFPANC
Trigger: ACAGTTAGCTGGGAAAAGGCCATGATATGTATTTCAGTTCCAGGATGGCTTCCATGGGTTATCTGGAAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR GCA 72 bp AGAGGCCTAAGAAAATACTGCCAGGGTTGTAATAGCTaGTTTCTTCCTATGGCGACTGTCACTTCAGTCACT +
Preference number: 3 (lower is better)
Translates to: RGLRKYCQGCNS*FLPMATVTSVT
Trigger: AGTGACTGAAGTGACAGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCTTAGGCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR GCA 72 bp CCTTTAATTTCCTGGTGCAGAGGCCTAAGAAAATACTaGCAGGGTTGTAATAGCTGCTTTCTTCCTATGGCG +
Preference number: 3 (lower is better)
Translates to: PLISWCRGLRKY*QGCNSCFLPMA
Trigger: CGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR CAA 90 bp CCCAAACCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGGTTGGGAAATGGAATTaGTATAAACCCCACCCGCTT +
Preference number: 3 (lower is better)
Translates to: PKPTKHTEVKKNILTLKRVGKWN*YKPHPL
Trigger: AAGCGGGTGGGGTTTATACAAATTCCATTTCCCAAC...CCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGGTTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR TCA 72 bp GAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTTTaGCACATGAACGTGAAACCATACTGCTTGATCTGC +
Preference number: 3 (lower is better)
Translates to: ERLSRERKELHF*HMNVKPYCLIC
Trigger: GCAGATCAAGCAGTATGGTTTCACGTTCATGTGTCAAAAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR GCA 72 bp TCTGCATTAAAGATCTGGGAGTCTTCTGATGTGCCTTaGTTTGCAGATTCAGAGAATTTACAGAAAGAAGTC +
Preference number: 3 (lower is better)
Translates to: SALKIWESSDVP*FADSENLQKEV
Trigger: GACTTCTTTCTGTAAATTCTCTGAATCTGCAAAGCAAGGCACATCAGAAGACTCCCAGATCTTTAATGCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR-3UTR CAA 90 bp CTCTCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTTTAGCTGTGAGGAAGTaGGGAAATGGAATTTGTATA +
Preference number: 3 (lower is better)
Translates to: LSLSPEPRFLALIYYSFPLAVRK*GNGICI
Trigger: TATACAAATTCCATTTCCCAACTTCCTCACAGCTAA...AGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CCA 72 bp ATGTACTTAAAGCACAGACCTCTTCAGCTTACAAACTaGAAAGCCTTTCAAATTCAGACTAAATGCACCAAA +
Preference number: 3 (lower is better)
Translates to: MYLKHRPLQLTN*KAFQIQTKCTK
Trigger: TTTGGTGCATTTAGTCTGAATTTGAAAGGCTTTCCAGTTTGTAAGCTGAAGAGGTCTGTGCTTTAAGTACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp ACACTTGGAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTTGATTGTAAGTATAAGGTGGGAGCCTaGCAGGGAGCAGGGACCCTC +
Preference number: 4 (lower is better)
Translates to: TLGALQEGLLCAQELDCKYKVGA*QGAGTL
Trigger: GAGGGTCCCTGCTCCCTGTCAGGCTCCCACCTTATA...CTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CAA 72 bp GGCAGGTTCGATGGAGAGGTTGTGCAATTAGCCCTCTaGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCA +
Preference number: 4 (lower is better)
Translates to: GRFDGEVVQLAL*AGQVVGQNSNS
Trigger: TGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGCACAACCTCTCCATCGAACCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp GGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCATTCCTCTCTGTAAGCAGCTTCCCCTCCTaGCATTCCATTACTGTCCCC +
Preference number: 4 (lower is better)
Translates to: GWAGGRAEFQFSHSFLSVSSFPS*HSITVP
Trigger: GGGGACAGTAATGGAATGTCAGGAGGGGAAGCTGCT...TACAGAGAGGAATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp GCAATTAGCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTTCCACTGGTTGGTCTaGGGATCCTTAATCCAGGAT +
Preference number: 4 (lower is better)
Translates to: AISPLGWAGGRAEFQFSHFHWLV*GSLIQD
Trigger: ATCCTGGATTAAGGATCCTCAGACCAACCAGTGGAA...ATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp AATGGCTCCTTTAATTTCCTGGTGCAGAGGCCTAAGAAAATACTGCCAGGGTTGATCCTCCTGAACCAGTaGAGCCCCAGCATCCACACT +
Preference number: 4 (lower is better)
Translates to: NGSFNFLVQRPKKILPGLILLNQ*SPSIHT
Trigger: AGTGTGGATGCTGGGGCTGCACTGGTTCAGGAGGAT...CAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGGAGCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp GCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCATTCCCCAACCAAACTCTCCTaGTCCTCAATTTCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: ALLAGQVVGQNSNSVIHSPTKLS*SSISWY
Trigger: ATACCAGGAAATTGAGGAGCAGGAGAGTTTGGTTGG...GGAATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACAGAGTTGTCAGGTACTTaGCCAGCAGCCACACACCAA +
Preference number: 4 (lower is better)
Translates to: LWHFRALFTETLRASLKTELSGT*PAATHQ
Trigger: TTGGTGTGTGGCTGCTGGCCAAGTACCTGACAACTC...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp GGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCATTCCTCTCTGTAGCTTGGTCCTTTACTTaGAGGGTCTTCATCCTTTGG +
Preference number: 4 (lower is better)
Translates to: GWAGGRAEFQFSHSFLSVAWSFT*RVFILW
Trigger: CCAAAGGATGAAGACCCTTCAAGTAAAGGACCAAGC...TACAGAGAGGAATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp TCCCCCACCCCTCGTTCCACACACATGCATTCAGGTACAGACAACTATGAGAATGGTTTAATGAAGAAATaGAGAGGCAAGCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: SPTPRSTHMHSGTDNYENGLMKK*RGKPAR
Trigger: CCGTGCTGGCTTGCCTCTGCATTTCTTCATTAAACC...ATTCTCATAGTTGTCTGTACCTGAATGCATGTGTGTGGAACGAGGGGTGGGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp CCCAAACCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGCGTGTGTGCCATAGTTaGGGATCAAGAGCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: PKPTKHTEVKKNILTLKRRVCHS*GSRALP
Trigger: TGGCAGAGCTCTTGATCCTCAACTATGGCACACACG...CCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGGTTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp TGTGGTAAGAAGACAAGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTCAGCCTTGGCCACTCTaGACACATCTTCACACACTG +
Preference number: 4 (lower is better)
Translates to: CGKKTRGKTVQREEGVTFQPWPL*THLHTL
Trigger: CAGTGTGTGAAGATGTGTTCAGAGTGGCCAAGGCTG...AAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCTTGTCTTCTTACCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp ACTAAATGCACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATGCATCACTATTGGTCACTATaGCAGTGTTGGTGGCAACCT +
Preference number: 4 (lower is better)
Translates to: TKCTKSNFSPTPRSTHMHHYWSL*QCWWQP
Trigger: AGGTTGCCACCAACACTGTCATAGTGACCAATAGTG...ATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp AGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTTTGACACATGAACGTTACTGTCCCCATGGATaGCTGTCATGGCCCTACGAA +
Preference number: 4 (lower is better)
Translates to: RGKTVQREEGVTFLTHERYCPHG*LSWPYE
Trigger: TTCGTAGGGCCATGACAGTCATCCATGGGGACAGTA...ACGTTCATGTGTCAAAAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp GCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCATTCCTCTCTGTATGTGAGCAGGTTCTTCTaGTCCAGGTTTTGGCAAAGA +
Preference number: 4 (lower is better)
Translates to: AGQVVGQNSNSVIHSSLYVSRFF*SRFWQR
Trigger: TCTTTGCCAAAACCTGGAGCAGAAGAACCTGCTCAC...ATACAGAGAGGAATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp ACTAAATGCACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATGCATGTGTTCTGGCTATTCTaGTTGTCCAGAAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: TKCTKSNFSPTPRSTHMHVFWLF*LSRRKE
Trigger: CTCCTTCCTTCTGGACAACCAGAATAGCCAGAACAC...ATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CTCTCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTCCCTCTTCATGGGTCTaGGAGAGCAGATGGACAGGG +
Preference number: 4 (lower is better)
Translates to: LSLSPEPRFLALIYYSFPPSSWV*ESRWTG
Trigger: CCCTGTCCATCTGCTCTCCCAGACCCATGAAGAGGG...AGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp GCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCATTCCTGCTCCTCAATTTCCTaGTATTCCTTCTTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: ALLAGQVVGQNSNSVIHSCSSIS*YSFFLY
Trigger: GTACAAGAAGAAGGAATACCAGGAAATTGAGGAGCA...GGAATGAATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp AGAAAATACTGCCAGGGTTGTAATAGCTGCTTTCTTCCTATGGCGACTGTCACTCCATTACTGTCCCCATaGATGACTGTCATGGCCCTA +
Preference number: 4 (lower is better)
Translates to: RKYCQGCNSCFLPMATVTPLLSP*MTVMAL
Trigger: TAGGGCCATGACAGTCATCCATGGGGACAGTAATGG...AGTGACAGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp ACACTTGGAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTTGATTGTAAGTGTGTTGATAGAAAGTaGGGTGGTACTCTGGTAATT +
Preference number: 4 (lower is better)
Translates to: TLGALQEGLLCAQELDCKCVDRK*GGTLVI
Trigger: AATTACCAGAGTACCACCTCACTTTCTATCAACACA...CTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp AGAAAATACTGCCAGGGTTGTAATAGCTGCTTTCTTCCTATGGCGACTGTCACTGGGACACACATACCTTaGGGCTTTCAAACAGGTTCA +
Preference number: 4 (lower is better)
Translates to: RKYCQGCNSCFLPMATVTGTHIP*GFQTGS
Trigger: TGAACCTGTTTGAAAGCCTCAAGGTATGTGTGTCCC...AGTGACAGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp AATGGCTCCTTTAATTTCCTGGTGCAGAGGCCTAAGAAAATACTGCCAGGGTTGACAGATGTCCATAAGTaGCTTCGTAAACCCCAAGCT +
Preference number: 4 (lower is better)
Translates to: NGSFNFLVQRPKKILPGLTDVHK*LRKPQA
Trigger: AGCTTGGGGTTTACGAAGGCACTTATGGACATCTGT...CAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGGAGCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp ACTAAATGCACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATGCATCTGTGGTCTTACAGTTaGTGTATGTCAAGTCCATCA +
Preference number: 4 (lower is better)
Translates to: TKCTKSNFSPTPRSTHMHLWSYS*CMSSPS
Trigger: TGATGGACTTGACATACACCAACTGTAAGACCACAG...ATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp TCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTTACATAACAGCTAGGTGTTaGCTGAAGCCCCCGGGACAC +
Preference number: 4 (lower is better)
Translates to: SLSPEPRFLALIYYSFPYITARC*LKPPGH
Trigger: GTGTCCCGGGGGCTTCAGCCAACACCTAGCTGTTAT...GTAAGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGCAGGTTCTGGCTCATAAGAGGTaGTTTGGTATAAGGTGGGAG +
Preference number: 4 (lower is better)
Translates to: PTKHTEVKKNILTLKRQVLAHKR*FGIRWE
Trigger: CTCCCACCTTATACCAAACCACCTCTTATGAGCCAG...AACCTGCCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp AATGGCTCCTTTAATTTCCTGGTGCAGAGGCCTAAGAAAATACTGCCAGGGTTGGCATTCTTGCATATTTaGAATCCAGTGGTACCCGTT +
Preference number: 4 (lower is better)
Translates to: NGSFNFLVQRPKKILPGLAFLHI*NPVVPV
Trigger: AACGGGTACCACTGGATTTCAAATATGCAAGAATGC...CAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGGAGCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp ACTAAATGCACCAAATCCAATTTCTCCCCCACCCCTCGTTCCACACACATGCATAGGTTGCTCTCTTTCTaGGGAATAGTATACACTTCA +
Preference number: 4 (lower is better)
Translates to: TKCTKSNFSPTPRSTHMHRLLSF*GIVYTS
Trigger: TGAAGTGTATACTATTCCTCAGAAAGAGAGCAACCT...ATGCATGTGTGTGGAACGAGGGGTGGGGGAGAAATTGGATTTGGTGCATTTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp CCCAAACCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGTCCAAGAGGCTTGTCTaGTTCAGCACACGCTATTAT +
Preference number: 4 (lower is better)
Translates to: PKPTKHTEVKKNILTLKRSKRLV*FSTRYY
Trigger: ATAATAGCGTGTGCTGAAGCAGACAAGCCTCTTGGA...CCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGGTTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACAGTTTCAGGGCATTCTTaGATATTTGAAATCCAGTGG +
Preference number: 4 (lower is better)
Translates to: LWHFRALFTETLRASLKTVSGHS*IFEIQW
Trigger: CCACTGGATTTCAAATATGCAAGAATGCCCTGAAAC...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp CCCAAACCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGCACCTGACAGTTCAGTaGATTCCTGATAAACTCCAC +
Preference number: 4 (lower is better)
Translates to: PKPTKHTEVKKNILTLKRHLTVQ*IPDKLH
Trigger: GTGGAGTTTATCAGGAATGCACTGAACTGTCAGGTG...CCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGGTTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACAATATTTGAAATCCAGTaGTACCCGTTTCTCCAAGAG +
Preference number: 4 (lower is better)
Translates to: LWHFRALFTETLRASLKTIFEIQ*YPFLQE
Trigger: CTCTTGGAGAAACGGGTACCACTGGATTTCAAATAT...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGCAGGTTACTGCCCATCTTCTGTaGTCTTACAGTTGGTGTATG +
Preference number: 4 (lower is better)
Translates to: PTKHTEVKKNILTLKRQVTAHLL*SYSWCM
Trigger: CATACACCAACTGTAAGACCACAGAAGATGGGCAGT...AACCTGCCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CCCACAAAGCACACAGAGGTTAAGAAGAACATTTTAACGCTCAAGAGGCAGGTTTTCTGCTCCAGGTTTTaGCAAAGAACATCACCTGAC +
Preference number: 4 (lower is better)
Translates to: PTKHTEVKKNILTLKRQVFCSRF*QRTSPD
Trigger: GTCAGGTGATGTTCTTTGCCAAAACCTGGAGCAGAA...AACCTGCCTCTTGAGCGTTAAAATGTTCTTCTTAACCTCTGTGTGCTTTGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR TCA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACATCATCCATATTGGCTTaGAAATTAAAGTTGGGGGAA +
Preference number: 4 (lower is better)
Translates to: LWHFRALFTETLRASLKTSSILA*KLKLGE
Trigger: TTCCCCCAACTTTAATTTTCAAGCCAATATGGATGA...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR GCA 90 bp TGTGGTAAGAAGACAAGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTCTTTTTCAGAGATGGTaGTCTGACGTCTTTAGCTGT +
Preference number: 4 (lower is better)
Translates to: CGKKTRGKTVQREEGVTFLFQRW*SDVFSC
Trigger: ACAGCTAAAGACGTCAGAGCACCATCTCTGAAAAAG...AAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCTTGTCTTCTTACCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CAA 72 bp GGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTTaGACACATGAACGTGAAACCATACTGCTTGATCTG +
Preference number: 4 (lower is better)
Translates to: GKTVQREEGVTF*THERETILLDL
Trigger: CAGATCAAGCAGTATGGTTTCACGTTCATGTGTCAAAAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
3UTR CAA 72 bp GAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTaGATTGTAAGTGTTAAAGCAAGAATACATCATCTT +
Preference number: 4 (lower is better)
Translates to: ELFRRAYSVHKS*IVSVKARIHHL
Trigger: AAGATGATGTATTCTTGCTTTAACACTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp TCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTTACGCTCTGAAGTTGGGGTaGTTTTCACTGTGTAGATCC +
Preference number: 4 (lower is better)
Translates to: SLSPEPRFLALIYYSFPYALKLG*FSLCRS
Trigger: GGATCTACACAGTGAAAACCACCCCAACTTCAGAGC...GTAAGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp CCTCTTCAGCTTACAAACTGGAAAGCCTTTCAAATTCAGACTAAATGCACCAAAAGGGTCTTCATCCTTTaGAACTCAGTAGAGAACTTG +
Preference number: 4 (lower is better)
Translates to: PLQLTNWKAFQIQTKCTKRVFIL*NSVENL
Trigger: CAAGTTCTCTACTGAGTTCCAAAGGATGAAGACCCT...TTTGGTGCATTTAGTCTGAATTTGAAAGGCTTTCCAGTTTGTAAGCTGAAGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CCA 90 bp TCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTTACAGTCCTTCGTCAAACTaGTCTGAGAAATGTAGTCTG +
Preference number: 4 (lower is better)
Translates to: SLSPEPRFLALIYYSFPYSPSSN*SEKCSL
Trigger: CAGACTACATTTCTCAGACCAGTTTGACGAAGGACT...GTAAGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp TCCCCCACCCCTCGTTCCACACACATGCATTCAGGTACAGACAACTATGAGAATCCACCAAAGGTGAAGTaGGTGACTTTCGCATCACAG +
Preference number: 5 (lower is better)
Translates to: SPTPRSTHMHSGTDNYENPPKVK*VTFASQ
Trigger: CTGTGATGCGAAAGTCACCAACTTCACCTTTGGTGG...ATTCTCATAGTTGTCTGTACCTGAATGCATGTGTGTGGAACGAGGGGTGGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp GCAATTAGCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATTCTTCACACACTGTCTaGCAGAAAATCTTGAGGGTG +
Preference number: 5 (lower is better)
Translates to: AISPLGWAGGRAEFQFSHSSHTV*QKILRV
Trigger: CACCCTCAAGATTTTCTGCAAGACAGTGTGTGAAGA...ATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS TCA 90 bp GGTAGGACCTCCAAGACAGGTAGTTTCAGGGCATTCTTGCATATTTaGAATCCAGTGGTACCCGTTTCTCCAAGAGGCTTGTCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: GRTSKTGSFRAFLHI*NPVVPVSPRGLSAS
Trigger: TGAAGCAGACAAGCCTCTTGGAGAAACGGGTACCACTGGATTTCAAATATGCAAGAATGCCCTGAAACTACCTGTCTTGGAGGTCCTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS GCA 90 bp GCATATTTGAAATCCAGTGGTACCCGTTTCTCCAAGAGGCTTGTCTaGTTCAGCACACGCTATTATCATCCAGATGAGGACCAAGGCCAT +
Preference number: 5 (lower is better)
Translates to: AYLKSSGTRFSKRLV*FSTRYYHPDEDQGH
Trigger: ATGGCCTTGGTCCTCATCTGGATGATAATAGCGTGTGCTGAAGCAGACAAGCCTCTTGGAGAAACGGGTACCACTGGATTTCAAATATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp GCAATTAGCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATAAGGGTCTTCATCCTTaGGAACTCAGTAGAGAACTT +
Preference number: 5 (lower is better)
Translates to: AISPLGWAGGRAEFQFSHKGLHP*ELSREL
Trigger: AAGTTCTCTACTGAGTTCCAAAGGATGAAGACCCTT...ATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACATCTGTGGTCTTACAGTaGGTGTATGTCAAGTCCATC +
Preference number: 5 (lower is better)
Translates to: LWHFRALFTETLRASLKTSVVLQ*VYVKSI
Trigger: GATGGACTTGACATACACCAACTGTAAGACCACAGA...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp CTGTGGCATTTCAGGGCACTGTTTACTGAAACCCTGAGGGCCTCTTTGAAAACAAGCTTGGTCCTTTACTaGAAGGGTCTTCATCCTTTG +
Preference number: 5 (lower is better)
Translates to: LWHFRALFTETLRASLKTSLVLY*KGLHPL
Trigger: CAAAGGATGAAGACCCTTCAAGTAAAGGACCAAGCT...TGTTTTCAAAGAGGCCCTCAGGGTTTCAGTAAACAGTGCCCTGAAATGCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp TGTGGTAAGAAGACAAGGGGAAAGACTGTCCAGAGAGAGGAAGGAGTTACATTTTTCTGGCTATTCTGGTaGTCCAGAAGGAAGGAGGAC +
Preference number: 5 (lower is better)
Translates to: CGKKTRGKTVQREEGVTFFWLFW*SRRKED
Trigger: GTCCTCCTTCCTTCTGGACAACCAGAATAGCCAGAA...AAATGTAACTCCTTCCTCTCTCTGGACAGTCTTTCCCCTTGTCTTCTTACCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp AATGGCTCCTTTAATTTCCTGGTGCAGAGGCCTAAGAAAATACTGCCAGGGTTGGACACAGTAGGACACTaGGCATCCATCACTGATAAC +
Preference number: 5 (lower is better)
Translates to: NGSFNFLVQRPKKILPGLDTVGH*ASITDN
Trigger: GTTATCAGTGATGGATGCCAAGTGTCCTACTGTGTC...CAACCCTGGCAGTATTTTCTTAGGCCTCTGCACCAGGAAATTAAAGGAGCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp AGAAAATACTGCCAGGGTTGTAATAGCTGCTTTCTTCCTATGGCGACTGTCACTGTCACTATGACAGTGTaGGTGGCAACCTGGCTCATA +
Preference number: 5 (lower is better)
Translates to: RKYCQGCNSCFLPMATVTVTMTV*VATWLI
Trigger: TATGAGCCAGGTTGCCACCAACACTGTCATAGTGAC...AGTGACAGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp GCAATTAGCCCTCTTGGCTGGGCAGGTGGTAGGGCAGAATTCCAATTCAGTCATGTCTTGCAGAAAATCTaGAGGGTGCATTTCTTTTTA +
Preference number: 5 (lower is better)
Translates to: AISPLGWAGGRAEFQFSHVLQKI*RVHFFL
Trigger: TAAAAAGAAATGCACCCTCAAGATTTTCTGCAAGAC...ATGACTGAATTGGAATTCTGCCCTACCACCTGCCCAGCCAAGAGGGCTAATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp AGAAAATACTGCCAGGGTTGTAATAGCTGCTTTCTTCCTATGGCGACTGTCACTGGCAAGCCAGGTAGCTaGTCAGGTTTAATGAAGAAA +
Preference number: 5 (lower is better)
Translates to: RKYCQGCNSCFLPMATVTGKPGS*SGLMKK
Trigger: TTTCTTCATTAAACCTGACAAGCTACCTGGCTTGCC...AGTGACAGTCGCCATAGGAAGAAAGCAGCTATTACAACCCTGGCAGTATTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp ACACTTGGAGCTCTTCAGGAGGGCCTACTCTGTGCACAAGAGCTTGATTGTAAGATCATCCATATTGGCTaGAAAATTAAAGTTGGGGGA +
Preference number: 5 (lower is better)
Translates to: TLGALQEGLLCAQELDCKIIHIG*KIKVGG
Trigger: TCCCCCAACTTTAATTTTCAAGCCAATATGGATGAT...CTTACAATCAAGCTCTTGTGCACAGAGTAGGCCCTCCTGAAGAGCTCCAAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS GCA 90 bp TTAAGGACTGTTGCATCTGTTGCTAAGCTTCCAACCAAACTCTCCTaGTCCTCAATTTCCTGGTATTCCTTCTTCTTGTACTTCCGAGTA +
Preference number: 5 (lower is better)
Translates to: LRTVASVAKLPTKLS*SSISWYSFFLYFRV
Trigger: TACTCGGAAGTACAAGAAGAAGGAATACCAGGAAATTGAGGAGCAGGAGAGTTTGGTTGGAAGCTTAGCAACAGATGCAACAGTCCTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp CCTCTTCAGCTTACAAACTGGAAAGCCTTTCAAATTCAGACTAAATGCACCAAAGCCCTAAATTCAGCCTaGGCCACTCTGAACACATCT +
Preference number: 5 (lower is better)
Translates to: PLQLTNWKAFQIQTKCTKALNSA*ATLNTS
Trigger: AGATGTGTTCAGAGTGGCCAAGGCTGAATTTAGGGC...TTTGGTGCATTTAGTCTGAATTTGAAAGGCTTTCCAGTTTGTAAGCTGAAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp CTCTCATTGTCTCCCGAACCCCGGTTTTTAGCCTTAATTTATTACTCATTTCCTATAGGGTTGATGGTCTaGTCAGTGAAGACTCCTCCA +
Preference number: 5 (lower is better)
Translates to: LSLSPEPRFLALIYYSFPIGLMV*SVKTPP
Trigger: TGGAGGAGTCTTCACTGACAAGACCATCAACCCTAT...AGGAAATGAGTAATAAATTAAGGCTAAAAACCGGGGTTCGGGAGACAATGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS TCA 90 bp AGTCCTTCGTCAAACTGGTCTGAGAAATGTAGTCTGTTTCAACTTTaGAGTTCACAATGTTTAAGAAGGCAATCCCTGCAGAAGCGGTCA +
Preference number: 5 (lower is better)
Translates to: SPSSNWSEKCSLFQL*SSQCLRRQSLQKRS
Trigger: TGACCGCTTCTGCAGGGATTGCCTTCTTAAACATTGTGAACTTCAAAGTTGAAACAGACTACATTTCTCAGACCAGTTTGACGAAGGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS-3UTR CAA 90 bp CCTCTTCAGCTTACAAACTGGAAAGCCTTTCAAATTCAGACTAAATGCACCAAAAGGGCGAGTTCTGTGTaGATAGAAAGTGAGGTGGTA +
Preference number: 5 (lower is better)
Translates to: PLQLTNWKAFQIQTKCTKRASSV*IESEVV
Trigger: TACCACCTCACTTTCTATCAACACAGAACTCGCCCT...TTTGGTGCATTTAGTCTGAATTTGAAAGGCTTTCCAGTTTGTAAGCTGAAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS CCA 72 bp TGCAGAGGCAAGCCAGCACGGTCTATTGCCACTAGGTaGTTAGTGATGCCCTTCTGCCAGGTTTCTAAGGTG +
Preference number: 6 (lower is better)
Translates to: CRGKPARSIATR*LVMPFCQVSKV
Trigger: CACCTTAGAAACCTGGCAGAAGGGCATCACTAACCACCTAGTGGCAATAGACCGTGCTGGCTTGCCTCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS GCA 72 bp AAGGAAGGAGGACCTTACGTGATCCTCCTGAACCAGTaGAGCCCCAGCATCCACACTAGTGATTACGTGTGT +
Preference number: 6 (lower is better)
Translates to: KEGGPYVILLNQ*SPSIHTSDYVC
Trigger: ACACACGTAATCACTAGTGTGGATGCTGGGGCTGCACTGGTTCAGGAGGATCACGTAAGGTCCTCCTTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS GCA 72 bp GGCAAGCCAGGTAGCTTGTCAGGTTTAATGAAGAAATaGAGAGGCAAGCCAGCACGGTCTATTGCCACTAGG +
Preference number: 6 (lower is better)
Translates to: GKPGSLSGLMKK*RGKPARSIATR
Trigger: CCTAGTGGCAATAGACCGTGCTGGCTTGCCTCTGCATTTCTTCATTAAACCTGACAAGCTACCTGGCTTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS CAA 90 bp CCTGGTAGTCACAGCTTGGTCCTTTACTTGAAGGGTCTTCATCCTTaGGAACTCAGTAGAGAACTTGCCGTTGACTCTGGAGAAAAGGGC +
Preference number: 6 (lower is better)
Translates to: PGSHSLVLYLKGLHP*ELSRELAVDSGEKG
Trigger: GCCCTTTTCTCCAGAGTCAACGGCAAGTTCTCTACTGAGTTCCAAAGGATGAAGACCCTTCAAGTAAAGGACCAAGCTGTGACTACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS GCA 72 bp AAATCCAGTGGTACCCGTTTCTCCAAGAGGCTTGTCTaGTTCAGCACACGCTATTATCATCCAGATGAGGAC +
Preference number: 6 (lower is better)
Translates to: KSSGTRFSKRLV*FSTRYYHPDED
Trigger: GTCCTCATCTGGATGATAATAGCGTGTGCTGAAGCAGACAAGCCTCTTGGAGAAACGGGTACCACTGGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS TCA 72 bp TCTGGAGAAAAGGGCGAGTTCTGTGTTGATAGAAAGTaGGGTGGTACTCTGGTAATTCATCCAGGACTCCAG +
Preference number: 6 (lower is better)
Translates to: SGEKGEFCVDRK*GGTLVIHPGLQ
Trigger: CTGGAGTCCTGGATGAATTACCAGAGTACCACCTCACTTTCTATCAACACAGAACTCGCCCTTTTCTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS CAA 72 bp CACAGCTTGGTCCTTTACTTGAAGGGTCTTCATCCTTaGGAACTCAGTAGAGAACTTGCCGTTGACTCTGGA +
Preference number: 6 (lower is better)
Translates to: HSLVLYLKGLHP*ELSRELAVDSG
Trigger: TCCAGAGTCAACGGCAAGTTCTCTACTGAGTTCCAAAGGATGAAGACCCTTCAAGTAAAGGACCAAGCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS TCA 72 bp TCCAAGACAGGTAGTTTCAGGGCATTCTTGCATATTTaGAATCCAGTGGTACCCGTTTCTCCAAGAGGCTTG +
Preference number: 6 (lower is better)
Translates to: SKTGSFRAFLHI*NPVVPVSPRGL
Trigger: CAAGCCTCTTGGAGAAACGGGTACCACTGGATTTCAAATATGCAAGAATGCCCTGAAACTACCTGTCTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS CAA 72 bp TACCTGAACCCTGGTAGTCACAGCTTGGTCCTTTACTaGAAGGGTCTTCATCCTTTGGAACTCAGTAGAGAA +
Preference number: 6 (lower is better)
Translates to: YLNPGSHSLVLY*KGLHPLELSRE
Trigger: TTCTCTACTGAGTTCCAAAGGATGAAGACCCTTCAAGTAAAGGACCAAGCTGTGACTACCAGGGTTCAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS CAA 90 bp GAAGTTGGTGACTTTCGCATCACAGGAATCATCATCCATATTGGCTaGAAAATTAAAGTTGGGGGAATCAACATTTGTGCATCCTGGGTG +
Preference number: 6 (lower is better)
Translates to: EVGDFRITGIIIHIG*KIKVGGINICASWV
Trigger: CACCCAGGATGCACAAATGTTGATTCCCCCAACTTTAATTTTCAAGCCAATATGGATGATGATTCCTGTGATGCGAAAGTCACCAACTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS TCA 72 bp TCAAACTGGTCTGAGAAATGTAGTCTGTTTCAACTTTaGAGTTCACAATGTTTAAGAAGGCAATCCCTGCAG +
Preference number: 6 (lower is better)
Translates to: SNWSEKCSLFQL*SSQCLRRQSLQ
Trigger: CTGCAGGGATTGCCTTCTTAAACATTGTGAACTTCAAAGTTGAAACAGACTACATTTCTCAGACCAGTTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS CAA 72 bp GACTTTCGCATCACAGGAATCATCATCCATATTGGCTaGAAAATTAAAGTTGGGGGAATCAACATTTGTGCA +
Preference number: 6 (lower is better)
Translates to: DFRITGIIIHIG*KIKVGGINICA
Trigger: TGCACAAATGTTGATTCCCCCAACTTTAATTTTCAAGCCAATATGGATGATGATTCCTGTGATGCGAAAGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9
CDS TCA 72 bp ACTTTCGCATCACAGGAATCATCATCCATATTGGCTTaGAAATTAAAGTTGGGGGAATCAACATTTGTGCAT +
Preference number: 6 (lower is better)
Translates to: TFASQESSSILA*KLKLGESTFVH
Trigger: ATGCACAAATGTTGATTCCCCCAACTTTAATTTTCAAGCCAATATGGATGATGATTCCTGTGATGCGAAAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081035.9