Pregenerated sensors for MPDU1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018761Ensembl transcript IDs: ENSMUST00000018905.12, ENSMUST00000125389.2, ENSMUST00000129224.8, ENSMUST00000148242.8, ENSMUST00000155200.8
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATaGAGGGTGCTTACACTGCACCCGCAGATCAAGTCATGTGGGGAG | + |
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Preference number: 1 (lower is better) Translates to: LLLPQPWLRRLQLEE*RVLTLHPQIKSCGE Trigger: CTCCCCACATGACTTGATCTGCGGGTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000148242.8 |
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| 3UTR TCA 90 bp | GATTCGGGCCAAGGAGCCCCCAAACAGCATAAACACTGTAATGGCTaGAAGCTGGCCTGTGTGTCCGTTGCGGTAGTTAGTGGCTGCCTG | + |
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Preference number: 1 (lower is better) Translates to: DSGQGAPKQHKHCNG*KLACVSVAVVSGCL Trigger: CAGGCAGCCACTAACTACCGCAACGGACACACAGGCCAGCTTTCAGCCATTACAGTGTTTATGCTGTTTGGGGGCTCCTTGGCCCGAATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR TCA 90 bp | TCTGCTCCAGTAAACCAGCTGCTCACAAGGAGGGATCTGGGGAAGTaGGTGAGTGAAGGCAGGGCCTACACAAGCTTTACTGCTCCCACA | + |
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Preference number: 1 (lower is better) Translates to: SAPVNQLLTRRDLGK*VSEGRAYTSFTAPT Trigger: TGTGGGAGCAGTAAAGCTTGTGTAGGCCCTGCCTTCACTCACTCACTTCCCCAGATCCCTCCTTGTGAGCAGCTGGTTTACTGGAGCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| 3UTR GCA 90 bp | TGTCCTTGGTCCAAAAGGAAGGTAAGTGGACAGGGCCAGAGCATCTaGTCCAGTAAACCAGCTGCTCACAAGGAGGGATCTGGGGAAGTG | + |
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Preference number: 1 (lower is better) Translates to: CPWSKRKVSGQGQSI*SSKPAAHKEGSGEV Trigger: CACTTCCCCAGATCCCTCCTTGTGAGCAGCTGGTTTACTGGAGCAGATGCTCTGGCCCTGTCCACTTACCTTCCTTTTGGACCAAGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| 3UTR CCA 90 bp | CTGCACCCGCAGATCAAGTCATGTGGGGAGGACTCTGAGGATGAGTaGAAATGGAATTGTTCTAGAAGCGAGCTCAGCTCTATTGCTCCT | + |
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Preference number: 1 (lower is better) Translates to: LHPQIKSCGEDSEDE*KWNCSRSELSSIAP Trigger: AGGAGCAATAGAGCTGAGCTCGCTTCTAGAACAATTCCATTTCCACTCATCCTCAGAGTCCTCCCCACATGACTTGATCTGCGGGTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR CCA 90 bp | CCGCAGATCAAGTCATGTGGGGAGGACTCTGAGGATGAGTGGAAATaGAATTGTTCTAGAAGCGAGCTCAGCTCTATTGCTCCTTTTTCT | + |
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Preference number: 1 (lower is better) Translates to: PQIKSCGEDSEDEWK*NCSRSELSSIAPFS Trigger: AGAAAAAGGAGCAATAGAGCTGAGCTCGCTTCTAGAACAATTCCATTTCCACTCATCCTCAGAGTCCTCCCCACATGACTTGATCTGCGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTAATGGCTGAAAGCTaGCCTGTGTGTCCGTTGCGG | + |
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Preference number: 2 (lower is better) Translates to: ALLLPQPWLRRLQLEEWRVMAES*PVCPLR Trigger: CCGCAACGGACACACAGGCCAGCTTTCAGCCATTAC...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR-3UTR CCA 90 bp | GACTACAGCCAGAGGCGTGAGCGGGGAGAGCAGCGCCAGCAGGACCATGGCATAGAGGATGAGTGGAAATaGAATTGTTCTAGAAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: DYSQRRERGEQRQQDHGIEDEWK*NCSRSE Trigger: CTCGCTTCTAGAACAATTCCATTTCCACTCATCCTC...TATGCCATGGTCCTGCTGGCGCTGCTCTCCCCGCTCACGCCTCTGGCTGTAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGAGAGAAGAGACCACAAAGACTCCAGCCATGAGGGGGTCTCCAGTTTCCTGAAACACTGTAATGGCTaGAAGCTGGCCTGTGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: AERRDHKDSSHEGVSSFLKHCNG*KLACVS Trigger: GGACACACAGGCCAGCTTTCAGCCATTACAGTGTTT...CAGGAAACTGGAGACCCCCTCATGGCTGGAGTCTTTGTGGTCTCTTCTCTCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR-3UTR CCA 90 bp | CGAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGGTAATGGCTGAAAGCTaGCCTGTGTGTCCGTTGCGG | + |
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Preference number: 2 (lower is better) Translates to: RAQLYCSFFCLWGAFAFQVMAES*PVCPLR Trigger: CCGCAACGGACACACAGGCCAGCTTTCAGCCATTAC...CTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR-3UTR TCA 90 bp | CGAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGCTCCTCTGTAGTGCATaGCCAGGAAGCAGATGGCAA | + |
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Preference number: 2 (lower is better) Translates to: RAQLYCSFFCLWGAFAFQLLCSA*PGSRWQ Trigger: TTGCCATCTGCTTCCTGGTCATGCACTACAGAGGAG...CTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGCAAAAGGAAGGTAAGTaGACAGGGCCAGAGCATCTG | + |
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Preference number: 2 (lower is better) Translates to: TSFTAPTTLAQEAAVRGMQKEGK*TGPEHL Trigger: CAGATGCTCTGGCCCTGTCCACTTACCTTCCTTTTG...CATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| 3UTR-3UTR CCA 90 bp | ACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCACCCGACTCTGAGGATGAGTaGAAATGGAATTGTTCTAGA | + |
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Preference number: 2 (lower is better) Translates to: TLAQEAAVRGMEGAYTAPDSEDE*KWNCSR Trigger: TCTAGAACAATTCCATTTCCACTCATCCTCAGAGTC...GGGTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000148242.8 |
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| 3UTR-3UTR TCA 90 bp | GAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGTAAACACTGTAATGGCTaGAAGCTGGCCTGTGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: ELSSIAPFSVCGEPLRSSKHCNG*KLACVS Trigger: GGACACACAGGCCAGCTTTCAGCCATTACAGTGTTT...ACTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGGAGGATGAGTGGAAATaGAATTGTTCTAGAAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: QALLLPQPWLRRLQLEEWEDEWK*NCSRSE Trigger: CTCGCTTCTAGAACAATTCCATTTCCACTCATCCTC...CCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000148242.8 |
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| 3UTR CAA 90 bp | AGGATGAGTGGAAATGGAATTGTTCTAGAAGCGAGCTCAGCTCTATaGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: RMSGNGIVLEASSAL*LLFLFVGSLCVPVE Trigger: TTCTACTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGCTTCTAGAACAATTCCATTTCCACTCATCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR-3UTR CCA 90 bp | ATTGTTCTAGAAGCGAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCGACTCTGAGGATGAGTaGAAATGGAATTGTTCTAGA | + |
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Preference number: 2 (lower is better) Translates to: IVLEASSALLLLFLFVGSDSEDE*KWNCSR Trigger: TCTAGAACAATTCCATTTCCACTCATCCTCAGAGTC...GCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGCTTCTAGAACAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR CCA 72 bp | GCAGGGCCTACACAAGCTTTACTGCTCCCACAACCCTaGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: AGPTQALLLPQP*LRRLQLEEWRV Trigger: CACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGCCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| 3UTR TCA 72 bp | GCTGCTCACAAGGAGGGATCTGGGGAAGTGAGTGAGTaGAGGCAGGGCCTACACAAGCTTTACTGCTCCCAC | + |
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Preference number: 3 (lower is better) Translates to: AAHKEGSGEVSE*RQGLHKLYCSH Trigger: GTGGGAGCAGTAAAGCTTGTGTAGGCCCTGCCTTCACTCACTCACTTCCCCAGATCCCTCCTTGTGAGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| 3UTR CCA 72 bp | CCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATaGAGGGTGCTTACACTGCACCCGCAGATCAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: PQPWLRRLQLEE*RVLTLHPQIKS Trigger: TGACTTGATCTGCGGGTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000148242.8 |
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| 3UTR TCA 72 bp | CCTTTGCGTTCCAGTAGAAGAGGACCTGGGCAGCAATaGGGCCATTGCAGAGAGAAGAGACCACAAAGACTC | + |
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Preference number: 3 (lower is better) Translates to: PLRSSRRGPGQQ*GHCREKRPQRL Trigger: GAGTCTTTGTGGTCTCTTCTCTCTGCAATGGCCTCATTGCTGCCCAGGTCCTCTTCTACTGGAACGCAAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR TCA 72 bp | CAAGGAGCCCCCAAACAGCATAAACACTGTAATGGCTaGAAGCTGGCCTGTGTGTCCGTTGCGGTAGTTAGT | + |
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Preference number: 3 (lower is better) Translates to: QGAPKQHKHCNG*KLACVSVAVVS Trigger: ACTAACTACCGCAACGGACACACAGGCCAGCTTTCAGCCATTACAGTGTTTATGCTGTTTGGGGGCTCCTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| 3UTR-3UTR CAA 90 bp | GAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGTGCGAGCTCAGCTCTATaGCTCCTTTTTCTGTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: ELSSIAPFSVCGEPLRSSASSAL*LLFLFV Trigger: CACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGC...ACTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR-3UTR CAA 90 bp | TGGAATTGTTCTAGAAGCGAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGCAGCAATGAGGCCATaGCAGAGAGAAGAGACCACA | + |
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Preference number: 3 (lower is better) Translates to: WNCSRSELSSIAPFSVCGAAMRP*QREETT Trigger: TGTGGTCTCTTCTCTCTGCAATGGCCTCATTGCTGC...CCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGCTTCTAGAACAATTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR CCA 72 bp | AAGTCATGTGGGGAGGACTCTGAGGATGAGTGGAAATaGAATTGTTCTAGAAGCGAGCTCAGCTCTATTGCT | + |
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Preference number: 3 (lower is better) Translates to: KSCGEDSEDEWK*NCSRSELSSIA Trigger: AGCAATAGAGCTGAGCTCGCTTCTAGAACAATTCCATTTCCACTCATCCTCAGAGTCCTCCCCACATGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148242.8 |
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| CDS-3UTR GCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGACCCAGCCACGATaGCCAGCCCGAGGCCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: ALLLPQPWLRRLQLEEWRVTQPR*PARGLC Trigger: GCAAAGGCCTCGGGCTGGGCATCGTGGCTGGGTCAC...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR GCA 90 bp | ACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCAGTGACCCAGCCACGATaGCCAGCCCGAGGCCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: TTLAQEAAVRGMEGAYTAVTQPR*PARGLC Trigger: GCAAAGGCCTCGGGCTGGGCATCGTGGCTGGGTCAC...TGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | TCTCTCCCTACAGCAGCAACCAGCGCCTTCACACACCCTTCCGCCAGGACCTGCGTAATGGCTGAAAGCTaGCCTGTGTGTCCGTTGCGG | + |
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Preference number: 4 (lower is better) Translates to: SLPTAATSAFTHPSARTCVMAES*PVCPLR Trigger: CCGCAACGGACACACAGGCCAGCTTTCAGCCATTAC...GCAGGTCCTGGCGGAAGGGTGTGTGAAGGCGCTGGTTGCTGCTGTAGGGAGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR GCA 90 bp | ACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAAGTGACCCAGCCACGATaGCCAGCCCGAGGCCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: TQALLLPQPWLRRLQLEEVTQPR*PARGLC Trigger: GCAAAGGCCTCGGGCTGGGCATCGTGGCTGGGTCAC...TTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR GCA 90 bp | TCCAGCCATGAGGGGGTCTCCAGTTTCCTGAACAGAAGTGAAGATTCGGGCCAAGTGACCCAGCCACGATaGCCAGCCCGAGGCCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SSHEGVSSFLNRSEDSGQVTQPR*PARGLC Trigger: GCAAAGGCCTCGGGCTGGGCATCGTGGCTGGGTCAC...TTGGCCCGAATCTTCACTTCTGTTCAGGAAACTGGAGACCCCCTCATGGCTGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | CTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTGTAATGGCTGAAAGCTaGCCTGTGTGTCCGTTGCGG | + |
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Preference number: 4 (lower is better) Translates to: LLPQPWLRRLQLEEWRVLVMAES*PVCPLR Trigger: CCGCAACGGACACACAGGCCAGCTTTCAGCCATTAC...AAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR TCA 90 bp | GCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACTTGAGGCAGGGAACATaGAGCAAGTCCCATTGCACG | + |
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Preference number: 4 (lower is better) Translates to: APTTLAQEAAVRGMEGAYLRQGT*SKSHCT Trigger: CGTGCAATGGGACTTGCTTCATGTTCCCTGCCTCAA...GTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | GGGCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGGTACATTGGAGGCCTaGAGCAGAGTGACTACAGCC | + |
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Preference number: 4 (lower is better) Translates to: GPTQALLLPQPWLRRLQLGTLEA*SRVTTA Trigger: GGCTGTAGTCACTCTGCTCCAGGCCTCCAATGTACC...TAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR TCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGAGGGGAAGTTGTTGGTaGTGCTGTAGACCACGGTTC | + |
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Preference number: 4 (lower is better) Translates to: ALLLPQPWLRRLQLEEWRRGSCW*CCRPRF Trigger: GAACCGTGGTCTACAGCATCACCAACAACTTCCCCT...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR TCA 90 bp | GGACAGGGCCAGAGCATCTGCTCCAGTAAACCAGCTGCTCACAAGGAGGGATCTCTCCTCTGTAGTGCATaGCCAGGAAGCAGATGGCAA | + |
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Preference number: 4 (lower is better) Translates to: GQGQSICSSKPAAHKEGSLLCSA*PGSRWQ Trigger: TTGCCATCTGCTTCCTGGTCATGCACTACAGAGGAG...AGATCCCTCCTTGTGAGCAGCTGGTTTACTGGAGCAGATGCTCTGGCCCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR TCA 90 bp | CAGGGCCAGAGCATCTGCTCCAGTAAACCAGCTGCTCACAAGGAGGGATCTGGGTTTCCTGAACAGAAGTaGAGATTCGGGCCAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QGQSICSSKPAAHKEGSGFPEQK*RFGPRS Trigger: GCTCCTTGGCCCGAATCTTCACTTCTGTTCAGGAAA...CCCAGATCCCTCCTTGTGAGCAGCTGGTTTACTGGAGCAGATGCTCTGGCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR TCA 90 bp | GCAGAGAGAAGAGACCACAAAGACTCCAGCCATGAGGGGGTCTCCAGTTTCCTGTTGAGGCAGGGAACATaGAGCAAGTCCCATTGCACG | + |
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Preference number: 4 (lower is better) Translates to: AERRDHKDSSHEGVSSFLLRQGT*SKSHCT Trigger: CGTGCAATGGGACTTGCTTCATGTTCCCTGCCTCAA...CAGGAAACTGGAGACCCCCTCATGGCTGGAGTCTTTGTGGTCTCTTCTCTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR TCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGAAACACTGTAATGGCTaGAAGCTGGCCTGTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: ALLLPQPWLRRLQLEEWRKHCNG*KLACVS Trigger: GGACACACAGGCCAGCTTTCAGCCATTACAGTGTTT...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR TCA 90 bp | CAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCACTTTCCTGAACAGAAGTaGAGATTCGGGCCAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QPWLRRLQLEEWRVLTLHFPEQK*RFGPRS Trigger: GCTCCTTGGCCCGAATCTTCACTTCTGTTCAGGAAA...GTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR GCA 90 bp | AGGGCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTTTTGTGGGGAGCCTTTaGGTTCCAGTAGAAGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: RAYTSFTAPTTLAQEAAVFVGSL*VPVEED Trigger: GTCCTCTTCTACTGGAACGCAAAGGCTCCCCACAAA...AACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR GCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGTTTGTGGGGAGCCTTTaGGTTCCAGTAGAAGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: ALLLPQPWLRRLQLEEWRFVGSL*VPVEED Trigger: GTCCTCTTCTACTGGAACGCAAAGGCTCCCCACAAA...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR CCA 90 bp | CTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTTCCAGCATTACTGACTaGAGACTCAGTCCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LLPQPWLRRLQLEEWRVLSSITD*RLSPSA Trigger: TGCAGAAGGACTGAGTCTCCAGTCAGTAATGCTGGA...AAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | CAGGGCCAGAGCATCTGCTCCAGTAAACCAGCTGCTCACAAGGAGGGATCTGGGTCCTTTTTCTGTTTGTaGGGAGCCTTTGCGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: QGQSICSSKPAAHKEGSGSFFCL*GAFAFQ Trigger: CTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGA...CCCAGATCCCTCCTTGTGAGCAGCTGGTTTACTGGAGCAGATGCTCTGGCCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR TCA 90 bp | TCCAGCCATGAGGGGGTCTCCAGTTTCCTGAACAGAAGTGAAGATTCGGGCCAATTGAGGCAGGGAACATaGAGCAAGTCCCATTGCACG | + |
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Preference number: 4 (lower is better) Translates to: SSHEGVSSFLNRSEDSGQLRQGT*SKSHCT Trigger: CGTGCAATGGGACTTGCTTCATGTTCCCTGCCTCAA...TTGGCCCGAATCTTCACTTCTGTTCAGGAAACTGGAGACCCCCTCATGGCTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR TCA 90 bp | ACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGTTGAGGCAGGGAACATaGAGCAAGTCCCATTGCACG | + |
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Preference number: 4 (lower is better) Translates to: TSFTAPTTLAQEAAVRGMLRQGT*SKSHCT Trigger: CGTGCAATGGGACTTGCTTCATGTTCCCTGCCTCAA...CATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR GCA 90 bp | TACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAGAGACTCAGTCCTTCTaGACTCTTGGCTCCCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: YTSFTAPTTLAQEAAVRGETQSF*TLGSQE Trigger: CTCTTGGGAGCCAAGAGTGCAGAAGGACTGAGTCTC...TCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | CCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGTCCAGCATTACTGACTaGAGACTCAGTCCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: PQPWLRRLQLEEWRVLTLSSITD*RLSPSA Trigger: TGCAGAAGGACTGAGTCTCCAGTCAGTAATGCTGGA...CAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGTCCAGCATTACTGACTaGAGACTCAGTCCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ALLLPQPWLRRLQLEEWRSSITD*RLSPSA Trigger: TGCAGAAGGACTGAGTCTCCAGTCAGTAATGCTGGA...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CCA 90 bp | ACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCATCCTTTTTCTGTTTGTaGGGAGCCTTTGCGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: TTLAQEAAVRGMEGAYTASFFCL*GAFAFQ Trigger: CTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGA...TGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR CCA 90 bp | GGCAGGGCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGACTCTGAGGATGAGTaGAAATGGAATTGTTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: GRAYTSFTAPTTLAQEAADSEDE*KWNCSR Trigger: TCTAGAACAATTCCATTTCCACTCATCCTCAGAGTC...TGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGCCCTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129224.8 |
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| CDS-3UTR CCA 90 bp | GCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGAGGATGAGTGGAAATaGAATTGTTCTAGAAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: ALLLPQPWLRRLQLEEWREDEWK*NCSRSE Trigger: CTCGCTTCTAGAACAATTCCATTTCCACTCATCCTC...CCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129224.8 |
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| CDS-3UTR TCA 90 bp | CCGCAGATCAAGTCATGTGGGGAGGACTCTGAGGATGAGTGGAAATGGAATTGTAAACACTGTAATGGCTaGAAGCTGGCCTGTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: PQIKSCGEDSEDEWKWNCKHCNG*KLACVS Trigger: GGACACACAGGCCAGCTTTCAGCCATTACAGTGTTT...ACAATTCCATTTCCACTCATCCTCAGAGTCCTCCCCACATGACTTGATCTGCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR CCA 90 bp | ATTGCAGAGAGAAGAGACCACAAAGACTCCAGCCATGAGGGGGTCTCCAGTTTCTCCAGCATTACTGACTaGAGACTCAGTCCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: IAERRDHKDSSHEGVSSFSSITD*RLSPSA Trigger: TGCAGAAGGACTGAGTCTCCAGTCAGTAATGCTGGA...GAAACTGGAGACCCCCTCATGGCTGGAGTCTTTGTGGTCTCTTCTCTCTGCAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| 3UTR CAA 72 bp | ATTAAAACCATGTTTCGGAGTCTTTTATTGTCCCATTaGTATTCTCTCCCTACAGCAGCAACCAGCGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: IKTMFRSLLLSH*YSLPTAATSAF Trigger: GAAGGCGCTGGTTGCTGCTGTAGGGAGAGAATACAAATGGGACAATAAAAGACTCCGAAACATGGTTTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR CAA 90 bp | CACCCAACCCCAGGGCCCTTATCTGAGTCACTCTCCCTCACCCCCAGAACTGGGTGCTCCTTTTTCTGTTaGTGGGGAGCCTTTGCGTTC | + |
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Preference number: 5 (lower is better) Translates to: HPTPGPLSESLSLTPRTGCSFFC*WGAFAF Trigger: GAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCA...CCCAGTTCTGGGGGTGAGGGAGAGTGACTCAGATAAGGGCCCTGGGGTTGGGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR CAA 90 bp | CAGGGCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTGCAGCAATGAGGCCATaGCAGAGAGAAGAGACCACA | + |
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Preference number: 5 (lower is better) Translates to: QGLHKLYCSHNPGSGGCSAAMRP*QREETT Trigger: TGTGGTCTCTTCTCTCTGCAATGGCCTCATTGCTGC...ACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGCCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR CAA 90 bp | CAGGGCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTGTTTGTGGGGAGCCTTaGCGTTCCAGTAGAAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: QGLHKLYCSHNPGSGGCSVCGEP*RSSRRG Trigger: TCCTCTTCTACTGGAACGCAAAGGCTCCCCACAAAC...ACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS TCA 90 bp | AGGCAAGGAAAGCGACTCCTTTCACGGTCTCTCCTCTGTAGTGCATaGCCAGGAAGCAGATGGCAACGGTCTGGAGTGTCAGGAACAGCG | + |
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Preference number: 5 (lower is better) Translates to: RQGKRLLSRSLLCSA*PGSRWQRSGVSGTA Trigger: CGCTGTTCCTGACACTCCAGACCGTTGCCATCTGCTTCCTGGTCATGCACTACAGAGGAGAGACCGTGAAAGGAGTCGCTTTCCTTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS-3UTR CAA 90 bp | ACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCACCCATGAAGCAAGTCCCATaGCACGAAGAGCTGGTCGTA | + |
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Preference number: 5 (lower is better) Translates to: TLAQEAAVRGMEGAYTAPMKQVP*HEELVV Trigger: TACGACCAGCTCTTCGTGCAATGGGACTTGCTTCAT...GGGTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | CAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCACGTTTGTGGGGAGCCTTaGCGTTCCAGTAGAAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: QPWLRRLQLEEWRVLTLHVCGEP*RSSRRG Trigger: TCCTCTTCTACTGGAACGCAAAGGCTCCCCACAAAC...GTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR CAA 90 bp | CTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTTGCTCCTTTTTCTGTTaGTGGGGAGCCTTTGCGTTC | + |
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Preference number: 5 (lower is better) Translates to: LLPQPWLRRLQLEEWRVLCSFFC*WGAFAF Trigger: GAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCA...AAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS TCA 90 bp | AGCTCAGCTCTATTGCTCCTTTCACGGTCTCTCCTCTGTAGTGCATaGCCAGGAAGCAGATGGCAACGGTCTGGAGTGTCAGGAACAGCG | + |
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Preference number: 5 (lower is better) Translates to: SSALLLLSRSLLCSA*PGSRWQRSGVSGTA Trigger: CGCTGTTCCTGACACTCCAGACCGTTGCCATCTGCTTCCTGGTCATGCACTACAGAGGAGAGACCGTGAAAGGAGCAATAGAGCTGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155200.8 |
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| CDS-3UTR CAA 90 bp | CAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAATGGAGGGTGCTTACACTGCACATGAAGCAAGTCCCATaGCACGAAGAGCTGGTCGTA | + |
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Preference number: 5 (lower is better) Translates to: QPWLRRLQLEEWRVLTLHMKQVP*HEELVV Trigger: TACGACCAGCTCTTCGTGCAATGGGACTTGCTTCAT...GTGCAGTGTAAGCACCCTCCATTCCTCTAACTGCAGCCTCCTGAGCCAGGGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | ACCCGCAGATCAAGTCATGTGGGGAGGACTCTGAGGATGAGTGGAAATGGAATTCCCAGCCCGAGGCCTTaGCTGAGGAGAATCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: TRRSSHVGRTLRMSGNGIPSPRP*LRRILR Trigger: CCTCAAGATTCTCCTCAGCAAAGGCCTCGGGCTGGG...AATTCCATTTCCACTCATCCTCAGAGTCCTCCCCACATGACTTGATCTGCGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | GAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGTCCCAGCCCGAGGCCTTaGCTGAGGAGAATCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: ELSSIAPFSVCGEPLRSSPSPRP*LRRILR Trigger: CCTCAAGATTCTCCTCAGCAAAGGCCTCGGGCTGGG...ACTGGAACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | GCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGCAGCAATGAGGCCATaGCAGAGAGAAGAGACCACA | + |
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Preference number: 5 (lower is better) Translates to: AYTSFTAPTTLAQEAAVRAAMRP*QREETT Trigger: TGTGGTCTCTTCTCTCTGCAATGGCCTCATTGCTGC...TCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 |
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| CDS-3UTR CAA 90 bp | TTTCTGTTTGTGGGGAGCCTTTGCGTTCCAGTAGAAGAGGACCTGGGCAGCAATATGAAGCAAGTCCCATaGCACGAAGAGCTGGTCGTA | + |
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Preference number: 5 (lower is better) Translates to: FLFVGSLCVPVEEDLGSNMKQVP*HEELVV Trigger: TACGACCAGCTCTTCGTGCAATGGGACTTGCTTCAT...ATTGCTGCCCAGGTCCTCTTCTACTGGAACGCAAAGGCTCCCCACAAACAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | GCCTACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAAGTCCTTCTGCACTCTaGGCTCCCAAGAGTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: AYTSFTAPTTLAQEAAVRSPSAL*APKSLN Trigger: ATTTAAACTCTTGGGAGCCAAGAGTGCAGAAGGACT...TCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018905.12 ENSMUST00000129224.8 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | TACACAAGCTTTACTGCTCCCACAACCCTGGCTCAGGAGGCTGCAGTTAGAGGAGCGAGCTCAGCTCTATaGCTCCTTTTTCTGTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: YTSFTAPTTLAQEAAVRGASSAL*LLFLFV Trigger: CACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGC...TCCTCTAACTGCAGCCTCCTGAGCCAGGGTTGTGGGAGCAGTAAAGCTTGTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129224.8 |
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| CDS-3UTR CAA 90 bp | GAAGCGAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGCCTTTGCGTTAGTCCTTCTGCACTCTaGGCTCCCAAGAGTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: EASSALLLLFLFVGSLCVSPSAL*APKSLN Trigger: ATTTAAACTCTTGGGAGCCAAGAGTGCAGAAGGACT...AACGCAAAGGCTCCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | GGAATTGTTCTAGAAGCGAGCTCAGCTCTATTGCTCCTTTTTCTGTTTGTGGGGAGTCCTTCTGCACTCTaGGCTCCCAAGAGTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: GIVLEASSALLLLFLFVGSPSAL*APKSLN Trigger: ATTTAAACTCTTGGGAGCCAAGAGTGCAGAAGGACT...CCCCACAAACAGAAAAAGGAGCAATAGAGCTGAGCTCGCTTCTAGAACAATTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000125389.2 ENSMUST00000148242.8 |
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| CDS-3UTR CAA 90 bp | ATTAAAACCATGTTTCGGAGTCTTTTATTGTCCCATTTGTATTCTCTCCCTACAAGTCCTTCTGCACTCTaGGCTCCCAAGAGTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: IKTMFRSLLLSHLYSLPTSPSAL*APKSLN Trigger: ATTTAAACTCTTGGGAGCCAAGAGTGCAGAAGGACT...TGTAGGGAGAGAATACAAATGGGACAATAAAAGACTCCGAAACATGGTTTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS CCA 72 bp | GTTCCGGTCAGTGCCACTAGCTCCAGCATTACTGACTaGAGACTCAGTCCTTCTGCACTCTTGGCTCCCAAG | + |
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Preference number: 6 (lower is better) Translates to: VPVSATSSSITD*RLSPSALLAPK Trigger: CTTGGGAGCCAAGAGTGCAGAAGGACTGAGTCTCCAGTCAGTAATGCTGGAGCTAGTGGCACTGACCGGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000018905.12 ENSMUST00000125389.2 ENSMUST00000129224.8 ENSMUST00000148242.8 ENSMUST00000155200.8 |
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| CDS TCA 72 bp | AAGCGACTCCTTTCACGGTCTCTCCTCTGTAGTGCATaGCCAGGAAGCAGATGGCAACGGTCTGGAGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: KRLLSRSLLCSA*PGSRWQRSGVS Trigger: TGACACTCCAGACCGTTGCCATCTGCTTCCTGGTCATGCACTACAGAGGAGAGACCGTGAAAGGAGTCGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018905.12 |
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| CDS GCA 72 bp | AAGCTGGCCTGTGTGTCCGTTGCGGTAGTTAGTGGCTaGCTGAAGCAACTGAAGGGGAAGTTGTTGGTGATG | + |
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Preference number: 6 (lower is better) Translates to: KLACVSVAVVSG*LKQLKGKLLVM Trigger: CATCACCAACAACTTCCCCTTCAGTTGCTTCAGGCAGCCACTAACTACCGCAACGGACACACAGGCCAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129224.8 |
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| CDS CCA 72 bp | CCTTCTGCACTCTTGGCTCCCAAGAGTTTAAATACCTaGGGCAGCTTGACGAGAAGTGACCCAGCCACGATG | + |
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Preference number: 6 (lower is better) Translates to: PSALLAPKSLNT*GSLTRSDPATM Trigger: CATCGTGGCTGGGTCACTTCTCGTCAAGCTGCCCCAGGTATTTAAACTCTTGGGAGCCAAGAGTGCAGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000018905.12 ENSMUST00000125389.2 ENSMUST00000129224.8 ENSMUST00000148242.8 ENSMUST00000155200.8 |
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| CDS TCA 72 bp | CTATTGCTCCTTTCACGGTCTCTCCTCTGTAGTGCATaGCCAGGAAGCAGATGGCAACGGTCTGGAGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LLLLSRSLLCSA*PGSRWQRSGVS Trigger: TGACACTCCAGACCGTTGCCATCTGCTTCCTGGTCATGCACTACAGAGGAGAGACCGTGAAAGGAGCAATAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155200.8 |
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| CDS CAA 72 bp | AGCATTACTGACTGGAGACTCAGTCCTTCTGCACTCTaGGCTCCCAAGAGTTTAAATACCTGGGGCAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SITDWRLSPSAL*APKSLNTWGSL Trigger: CAAGCTGCCCCAGGTATTTAAACTCTTGGGAGCCAAGAGTGCAGAAGGACTGAGTCTCCAGTCAGTAATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000018905.12 ENSMUST00000125389.2 ENSMUST00000129224.8 ENSMUST00000148242.8 ENSMUST00000155200.8 |
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| CDS CAA 72 bp | GAGAATCTTGAGGCAGGGAACATGAAGCAAGTCCCATaGCACGAAGAGCTGGTCGTAACATTTCTCAGGTNN | + |
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Preference number: 6 (lower is better) Translates to: ENLEAGNMKQVP*HEELVVTFLRX Trigger: NNACCTGAGAAATGTTACGACCAGCTCTTCGTGCAATGGGACTTGCTTCATGTTCCCTGCCTCAAGATTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125389.2 |
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