RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MPC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026568

Ensembl transcript IDs: ENSMUST00000027853.6, ENSMUST00000193575.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGATTTGAGTTCTTGGTTATATCTGTAGCCATCAACACAGTGGACTaGGCTGTGCTGAGTTTCTCTGCAGGTCTGGCCATGTCCGCTAGT +
Preference number: 1 (lower is better)
Translates to: RFEFLVISVAINTVD*AVLSFSAGLAMSAS
Trigger: ACTAGCGGACATGGCCAGACCTGCAGAGAAACTCAGCACAGCTCAGTCCACTGTGTTGATGGCTACAGATATAACCAAGAACTCAAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193575.2
3UTR-3UTR GCA 90 bp ATCACCTTATCGGTAAGCAAATACACTAGGTTCCAATGTTTCTGTCCACATCTATGTGCTGAGTTTCTCTaGAGGTCTGGCCATGTCCGC +
Preference number: 2 (lower is better)
Translates to: ITLSVSKYTRFQCFCPHLCAEFL*RSGHVR
Trigger: GCGGACATGGCCAGACCTGCAGAGAAACTCAGCACA...TAGATGTGGACAGAAACATTGGAACCTAGTGTATTTGCTTACCGATAAGGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193575.2
3UTR TCA 72 bp TTCTTGGTTATATCTGTAGCCATCAACACAGTGGACTaGGCTGTGCTGAGTTTCTCTGCAGGTCTGGCCATG +
Preference number: 3 (lower is better)
Translates to: FLVISVAINTVD*AVLSFSAGLAM
Trigger: CATGGCCAGACCTGCAGAGAAACTCAGCACAGCTCAGTCCACTGTGTTGATGGCTACAGATATAACCAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193575.2
3UTR TCA 72 bp AAACCAAGGTTGGTGCCATCCACAAGCAAGTCCCCTTaGGGCAAATGTAAAGACAGACTGGTACTAAAAGTT +
Preference number: 3 (lower is better)
Translates to: KPRLVPSTSKSP*GKCKDRLVLKV
Trigger: AACTTTTAGTACCAGTCTGTCTTTACATTTGCCTCAAGGGGACTTGCTTGTGGATGGCACCAACCTTGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR TCA 90 bp AAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTCAGGTGATCAGCAAATCCGAAACAGCTaGGAGGCTCCTGCTGACCCC +
Preference number: 4 (lower is better)
Translates to: KYTRFQCFCPHLECSGDQQIRNS*EAPADP
Trigger: GGGGTCAGCAGGAGCCTCTCAGCTGTTTCGGATTTG...CTGATCACCTGAACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR TCA 90 bp AAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTCAGGTGATCAGACTCCACTTTATCCATaGGTCGGTGGTAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: KYTRFQCFCPHLECSGDQTPLYP*VGGRWP
Trigger: GGGCCACCTACCACCGACTCATGGATAAAGTGGAGT...CTGATCACCTGAACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS-3UTR TCA 90 bp TTATTATGGACAAATGGTAGAAACCAAGGTTGGTGCCATCCACAAGCAAGTCCCATCAACACAGTGGACTaGGCTGTGCTGAGTTTCTCT +
Preference number: 4 (lower is better)
Translates to: LLWTNGRNQGWCHPQASPINTVD*AVLSFS
Trigger: AGAGAAACTCAGCACAGCTCAGTCCACTGTGTTGAT...GGGACTTGCTTGTGGATGGCACCAACCTTGGTTTCTACCATTTGTCCATAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR GCA 90 bp TTATCGGTAAGCAAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTGTGCTGAGTTTCTCTaGAGGTCTGGCCATGTCCGC +
Preference number: 4 (lower is better)
Translates to: LSVSKYTRFQCFCPHLECCAEFL*RSGHVR
Trigger: GCGGACATGGCCAGACCTGCAGAGAAACTCAGCACA...ACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTTGCTTACCGATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR CCA 90 bp TTATCGGTAAGCAAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTGTTTCTCTGCAGGTCTaGCCATGTCCGCTAGTCCAG +
Preference number: 4 (lower is better)
Translates to: LSVSKYTRFQCFCPHLECVSLQV*PCPLVQ
Trigger: CTGGACTAGCGGACATGGCCAGACCTGCAGAGAAAC...ACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTTGCTTACCGATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR TCA 90 bp CCTTCTTTTCGAATGTTATCAGAATTTAGCATCACCTTATCGGTAAGCAAATACACTCCACTTTATCCATaGGTCGGTGGTAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: PSFRMLSEFSITLSVSKYTPLYP*VGGRWP
Trigger: GGGCCACCTACCACCGACTCATGGATAAAGTGGAGT...GTATTTGCTTACCGATAAGGTGATGCTAAATTCTGATAACATTCGAAAAGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS-3UTR TCA 90 bp GTAAGCAAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTCAGGTCTGAGAGGCTCCTGCTaGCCCCACAAAGAAATTAAC +
Preference number: 4 (lower is better)
Translates to: VSKYTRFQCFCPHLECSGLRGSC*PHKEIN
Trigger: GTTAATTTCTTTGTGGGGTCAGCAGGAGCCTCTCAG...ACCTGAACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTTGCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR CCA 90 bp GTTTATTATGGACAAATGGTAGAAACCAAGGTTGGTGCCATCCACAAGCAAGTCCGGCCTCAATTTCTTTaGCAGCAACAACTCCACTTT +
Preference number: 4 (lower is better)
Translates to: VYYGQMVETKVGAIHKQVRPQFL*QQQLHF
Trigger: AAAGTGGAGTTGTTGCTGCCAAAGAAATTGAGGCCG...GACTTGCTTGTGGATGGCACCAACCTTGGTTTCTACCATTTGTCCATAATAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS-3UTR CCA 90 bp GTAAGCAAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTCAGGTCGGCCTCAATTTCTTTaGCAGCAACAACTCCACTTT +
Preference number: 4 (lower is better)
Translates to: VSKYTRFQCFCPHLECSGRPQFL*QQQLHF
Trigger: AAAGTGGAGTTGTTGCTGCCAAAGAAATTGAGGCCG...ACCTGAACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTTGCTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS TCA 90 bp AAAGCGGCCTCAATTTCTTTGGCAGCAACAACTCCACTTTATCCATaGGTCGGTGGTAGGTGGCCCGCAGGCCTCGGGCGCCGGCAGCTG +
Preference number: 5 (lower is better)
Translates to: KAASISLAATTPLYP*VGGRWPAGLGRRQL
Trigger: CAGCTGCCGGCGCCCGAGGCCTGCGGGCCACCTACCACCGACTCATGGATAAAGTGGAGTTGTTGCTGCCAAAGAAATTGAGGCCGCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS-3UTR CAA 90 bp AAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTCAGGTGATCAGGCGGCCTCAATTTCTTaGGCAGCAACAACTCCACTT +
Preference number: 5 (lower is better)
Translates to: KYTRFQCFCPHLECSGDQAASIS*AATTPL
Trigger: AAGTGGAGTTGTTGCTGCCAAAGAAATTGAGGCCGC...CTGATCACCTGAACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS-3UTR CAA 90 bp GTAAGCAAATACACTAGGTTCCAATGTTTCTGTCCACATCTAGAATGTTCAGGTGCGGCCTCAATTTCTTaGGCAGCAACAACTCCACTT +
Preference number: 5 (lower is better)
Translates to: VSKYTRFQCFCPHLECSGAASIS*AATTPL
Trigger: AAGTGGAGTTGTTGCTGCCAAAGAAATTGAGGCCGC...ACCTGAACATTCTAGATGTGGACAGAAACATTGGAACCTAGTGTATTTGCTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS TCA 72 bp TCAATTTCTTTGGCAGCAACAACTCCACTTTATCCATaGGTCGGTGGTAGGTGGCCCGCAGGCCTCGGGCGC +
Preference number: 6 (lower is better)
Translates to: SISLAATTPLYP*VGGRWPAGLGR
Trigger: GCGCCCGAGGCCTGCGGGCCACCTACCACCGACTCATGGATAAAGTGGAGTTGTTGCTGCCAAAGAAATTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027853.6
ENSMUST00000193575.2
CDS TCA 72 bp GACCAAATAAACCCTGTAGCCATCAACACAGTGGACTaGGCTGTGCTGAGTTTCTCTGCAGGTCTGGCCATG +
Preference number: 6 (lower is better)
Translates to: DQINPVAINTVD*AVLSFSAGLAM
Trigger: CATGGCCAGACCTGCAGAGAAACTCAGCACAGCTCAGTCCACTGTGTTGATGGCTACAGGGTTTATTTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6
CDS TCA 72 bp ATATCTCCAAATCCGAAACAGCTGAGAGGCTCCTGCTaGCCCCACAAAGAAATTAACAGCGAACAAACTCCA +
Preference number: 6 (lower is better)
Translates to: ISPNPKQLRGSC*PHKEINSEQTP
Trigger: TGGAGTTTGTTCGCTGTTAATTTCTTTGTGGGGTCAGCAGGAGCCTCTCAGCTGTTTCGGATTTGGAGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027853.6