Pregenerated sensors for MPC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023861Ensembl transcript IDs: ENSMUST00000046754.15, ENSMUST00000124023.8, ENSMUST00000130559.2, ENSMUST00000142594.8, ENSMUST00000145402.8, ENSMUST00000155364.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGACATaGTCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGA | + |
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Preference number: 1 (lower is better) Translates to: IAFCVFPSARLLMLT*SVAAAVAGALSLSR Trigger: TCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCATTCTGTGTTTTCGGCTGCAGCAGTGGCTaGAGCACTGTCTCTTTCAAG | + |
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Preference number: 2 (lower is better) Translates to: SRLFNNVGMVIKIAFCVFGCSSG*STVSFK Trigger: CTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCC...GAAAACACAGAATGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| 3UTR TCA 72 bp | TGTGTTTTCCCTTCAGCACGACTACTCATGCTGACATaGTCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCT | + |
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Preference number: 3 (lower is better) Translates to: CVFPSARLLMLT*SVAAAVAGALS Trigger: AGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| 3UTR TCA 72 bp | CATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTaGCATGATCTGTGGCTGCAGCAGTGGCTGGAGCAC | + |
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Preference number: 3 (lower is better) Translates to: HSVFSLQHDYSC*HDLWLQQWLEH Trigger: GTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| 3UTR GCA 72 bp | TTCAGCACGACTACTCATGCTGACATGATCTGTGGCTaGAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: FSTTTHADMICG*SSGWSTVSFKS Trigger: GCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| 3UTR CCA 72 bp | ACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTaGAGCACTGTCTCTTTCAAGAGCTGGTCCTTGTAC | + |
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Preference number: 3 (lower is better) Translates to: THADMICGCSSG*STVSFKSWSLY Trigger: GTACAAGGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR GCA 90 bp | TCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCTTGTCATAGTCCGCCGCTTTaGGCACCAGCGCTCCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SVAAAVAGALSLSRAGPCHSPPL*APALQP Trigger: TGGCTGGAGCGCTGGTGCGCAAAGCGGCGGACTATG...ACAAGGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046754.15 ENSMUST00000155364.8 |
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| CDS-3UTR GCA 90 bp | AGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTCATAGTCCGCCGCTTTaGGCACCAGCGCTCCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: STTTHADMICGCSSGWSTHSPPL*APALQP Trigger: TGGCTGGAGCGCTGGTGCGCAAAGCGGCGGACTATG...AGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046754.15 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | CCCTTCAGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGACCCCAGTTGGCAACTaGGCCCCAGAAGTGCGTACT | + |
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Preference number: 4 (lower is better) Translates to: PFSTTTHADMICGCSSGWTPVGN*APEVRT Trigger: AGTACGCACTTCTGGGGCCCAGTTGCCAACTGGGGT...CCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | ATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCACCCCAGTTGGCAACTaGGCCCCAGAAGTGAGTACT | + |
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Preference number: 4 (lower is better) Translates to: MICGCSSGWSTVSFKSWSTPVGN*APEVST Trigger: AGTACTCACTTCTGGGGCCCAGTTGCCAACTGGGGT...GGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046754.15 |
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| CDS-3UTR GCA 90 bp | CTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCTTGTAACTGGGCCCCAGAAGTaGGTACTGGAATTCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LWLQQWLEHCLFQELVLVTGPQK*VLEFSA Trigger: TGCTGAGAATTCCAGTACGCACTTCTGGGGCCCAGT...TACAAGGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142594.8 |
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| CDS-3UTR TCA 90 bp | CCCTTCAGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGTGTAGGCAAATCTCATaGATGTCAGAGAATAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: PFSTTTHADMICGCSSGWCRQIS*MSENSN Trigger: GTTGCTATTCTCTGACATTCATGAGATTTGCCTACA...CCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR GCA 90 bp | ATGGTCATTAAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGAGTCCCGGAAGTCCTTaGTCCGGACATAGTCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: MVIKIAFCVFPSARLLMLSPGSP*SGHSPP Trigger: CGGCGGACTATGTCCGGAGCAAGGACTTCCGGGACT...CAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATCTTAATGACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046754.15 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | CCCTTCAGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGACTTCGTTTGTTACATaGCATGCAAACAAAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PFSTTTHADMICGCSSGWTSFVT*HANKSQ Trigger: CTGGCTTTTGTTTGCATGCCATGTAACAAACGAAGT...CCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | ATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCACTTCGTTTGTTACATaGCATGCAAACAAAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: MICGCSSGWSTVSFKSWSTSFVT*HANKSQ Trigger: CTGGCTTTTGTTTGCATGCCATGTAACAAACGAAGT...GGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | TTCAGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTTCGTTTGTTACATaGCATGCAAACAAAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FSTTTHADMICGCSSGWSTSFVT*HANKSQ Trigger: CTGGCTTTTGTTTGCATGCCATGTAACAAACGAAGT...GCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | GATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCTTACTTCGTTTGTTACATaGCATGCAAACAAAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: DLWLQQWLEHCLFQELVLTSFVT*HANKSQ Trigger: CTGGCTTTTGTTTGCATGCCATGTAACAAACGAAGT...AAGGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | GGGTTTAGGGACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCAACCCCAGTTGGCAACTaGGCCCCAGAAGTGCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: GFRDSRLFNNVGMVIKIATPVGN*APEVPH Trigger: ATGAGGCACTTCTGGGGCCCAGTTGCCAACTGGGGT...TGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTCCCTAAACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130559.2 |
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| CDS-3UTR TCA 90 bp | ACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTGTAGGCAAATCTCATaGATGTCAGAGAATAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: TTHADMICGCSSGWSTVSCRQIS*MSENSN Trigger: GTTGCTATTCTCTGACATTCATGAGATTTGCCTACA...AGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR GCA 90 bp | GACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCATTCTGTGTTAGTCCCGGAAGTCCTTaGTCCGGACATAGTCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: DSRLFNNVGMVIKIAFCVSPGSP*SGHSPP Trigger: CGGCGGACTATGTCCGGAGCAAGGACTTCCGGGACT...AACACAGAATGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046754.15 ENSMUST00000155364.8 |
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| CDS-3UTR GCA 90 bp | ACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCGTTTGTTACATGGCATaGAAACAAAAGCCAGTTTCG | + |
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Preference number: 4 (lower is better) Translates to: THADMICGCSSGWSTVSFVCYMA*KQKPVS Trigger: CGAAACTGGCTTTTGTTTGCATGCCATGTAACAAAC...GAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | TGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCTTGTACCCCACTGATAATCTCTaGAGATTTCTTCATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: CGCSSGWSTVSFKSWSLYPTDNL*RFLHVI Trigger: AATGACATGAAGAAATCTCCAGAGATTATCAGTGGG...GTACAAGGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | AGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTCCCACTGATAATCTCTaGAGATTTCTTCATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: STTTHADMICGCSSGWSTPTDNL*RFLHVI Trigger: AATGACATGAAGAAATCTCCAGAGATTATCAGTGGG...AGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | GACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCATTCTGTGTTACCCCAGTTGGCAACTaGGCCCCAGAAGTGCGTACT | + |
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Preference number: 4 (lower is better) Translates to: DSRLFNNVGMVIKIAFCVTPVGN*APEVRT Trigger: AGTACGCACTTCTGGGGCCCAGTTGCCAACTGGGGT...AACACAGAATGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR TCA 90 bp | GATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGACATGATCTGTAGCCACACGTCCAGTTaGACATTTGAGTCTAATGAA | + |
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Preference number: 4 (lower is better) Translates to: DSILCFPFSTTTHADMICSHTSS*TFESNE Trigger: TTCATTAGACTCAAATGTTCAACTGGACGTGTGGCT...ACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142594.8 |
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| CDS-3UTR TCA 90 bp | GATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGACATGATCTGTTGTAGGCAAATCTCATaGATGTCAGAGAATAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: DSILCFPFSTTTHADMICCRQIS*MSENSN Trigger: GTTGCTATTCTCTGACATTCATGAGATTTGCCTACA...ACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR TCA 90 bp | ATGGTCATTAAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGTGTAGGCAAATCTCATaGATGTCAGAGAATAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: MVIKIAFCVFPSARLLMLCRQIS*MSENSN Trigger: GTTGCTATTCTCTGACATTCATGAGATTTGCCTACA...CAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATCTTAATGACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR TCA 90 bp | GGGTTTAGGGACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCATGTAGGCAAATCTCATaGATGTCAGAGAATAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: GFRDSRLFNNVGMVIKIACRQIS*MSENSN Trigger: GTTGCTATTCTCTGACATTCATGAGATTTGCCTACA...TGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTCCCTAAACCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | GGGTTTAGGGACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCAACTTCGTTTGTTACATaGCATGCAAACAAAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GFRDSRLFNNVGMVIKIATSFVT*HANKSQ Trigger: CTGGCTTTTGTTTGCATGCCATGTAACAAACGAAGT...TGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTCCCTAAACCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | ATGGTCATTAAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGCCCACTGATAATCTCTaGAGATTTCTTCATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: MVIKIAFCVFPSARLLMLPTDNL*RFLHVI Trigger: AATGACATGAAGAAATCTCCAGAGATTATCAGTGGG...CAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATCTTAATGACCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CCA 90 bp | GGGTTTAGGGACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCACCCACTGATAATCTCTaGAGATTTCTTCATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: GFRDSRLFNNVGMVIKIAPTDNL*RFLHVI Trigger: AATGACATGAAGAAATCTCCAGAGATTATCAGTGGG...TGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTCCCTAAACCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | GTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGAGCTGGTCCTTGTACCGCTGAGCTACTTCGTTaGTTACATGGCATGCAAACA | + |
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Preference number: 5 (lower is better) Translates to: VAAAVAGALSLSRAGPCTAELLR*LHGMQT Trigger: TGTTTGCATGCCATGTAACAAACGAAGTAGCTCAGC...GGTACAAGGACCAGCTCTTGAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | CCCTTCAGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGGATTTCTTCATGTCATaGATAGCAGCAATGGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: PFSTTTHADMICGCSSGWDFFMS*IAAMGR Trigger: TCTCCCCATTGCTGCTATCAATGACATGAAGAAATC...CCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | AGCACGACTACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGCTGAGCTACTTCGTTaGTTACATGGCATGCAAACA | + |
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Preference number: 5 (lower is better) Translates to: STTTHADMICGCSSGWSTAELLR*LHGMQT Trigger: TGTTTGCATGCCATGTAACAAACGAAGTAGCTCAGC...AGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGTAGTCGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | ACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCAAGCCAGTTTCGAGGTaGTACCTTGTAGGCAAATCT | + |
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Preference number: 5 (lower is better) Translates to: THADMICGCSSGWSTVSFKPVSR*YLVGKS Trigger: AGATTTGCCTACAAGGTACAACCTCGAAACTGGCTT...GAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | ACTCATGCTGACATGATCTGTGGCTGCAGCAGTGGCTGGAGCACTGTCTCTTTCGATTTCTTCATGTCATaGATAGCAGCAATGGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: THADMICGCSSGWSTVSFDFFMS*IAAMGR Trigger: TCTCCCCATTGCTGCTATCAATGACATGAAGAAATC...GAAAGAGACAGTGCTCCAGCCACTGCTGCAGCCACAGATCATGTCAGCATGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS CCA 90 bp | AGAATAGCAACAGAGGGCGAAAGTCATCCGCCCACTGATAATCTCTaGAGATTTCTTCATGTCATTGATAGCAGCAATGGGGAGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: RIATEGESHPPTDNL*RFLHVIDSSNGETP Trigger: TGGGGTCTCCCCATTGCTGCTATCAATGACATGAAGAAATCTCCAGAGATTATCAGTGGGCGGATGACTTTCGCCCTCTGTTGCTATTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000145402.8 ENSMUST00000155364.8 |
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| CDS GCA 90 bp | TCGTCCTCCCTGAATGAGCTGAGCTACTTCGTTTGTTACATGGCATaGAAACAAAAGCCAGTTTCGAGGTTGTACCTTGTAGGCAAATCT | + |
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Preference number: 5 (lower is better) Translates to: SSSLNELSYFVCYMA*KQKPVSRLYLVGKS Trigger: AGATTTGCCTACAAGGTACAACCTCGAAACTGGCTTTTGTTTGCATGCCATGTAACAAACGAAGTAGCTCAGCTCATTCAGGGAGGACGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | GATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGACATGATCTGTGCTGAGCTACTTCGTTaGTTACATGGCATGCAAACA | + |
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Preference number: 5 (lower is better) Translates to: DSILCFPFSTTTHADMICAELLR*LHGMQT Trigger: TGTTTGCATGCCATGTAACAAACGAAGTAGCTCAGC...ACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | GATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGACATGATCTGTGATTTCTTCATGTCATaGATAGCAGCAATGGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: DSILCFPFSTTTHADMICDFFMS*IAAMGR Trigger: TCTCCCCATTGCTGCTATCAATGACATGAAGAAATC...ACAGATCATGTCAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | GGGTTTAGGGACTCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCAGCTGAGCTACTTCGTTaGTTACATGGCATGCAAACA | + |
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Preference number: 5 (lower is better) Translates to: GFRDSRLFNNVGMVIKIAAELLR*LHGMQT Trigger: TGTTTGCATGCCATGTAACAAACGAAGTAGCTCAGC...TGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGAGTCCCTAAACCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | ATGGTCATTAAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGGCTGAGCTACTTCGTTaGTTACATGGCATGCAAACA | + |
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Preference number: 5 (lower is better) Translates to: MVIKIAFCVFPSARLLMLAELLR*LHGMQT Trigger: TGTTTGCATGCCATGTAACAAACGAAGTAGCTCAGC...CAGCATGAGTAGTCGTGCTGAAGGGAAAACACAGAATGCTATCTTAATGACCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS-3UTR CAA 90 bp | TCTCGGCTATTCAATAATGTTGGCATGGTCATTAAGATAGCATTCTGTGTTTTCGATTTCTTCATGTCATaGATAGCAGCAATGGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: SRLFNNVGMVIKIAFCVFDFFMS*IAAMGR Trigger: TCTCCCCATTGCTGCTATCAATGACATGAAGAAATC...GAAAACACAGAATGCTATCTTAATGACCATGCCAACATTATTGAATAGCCGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000046754.15 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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| CDS CCA 72 bp | GACCCCAGTTGGCAACTGGGCCCCAGAAGTGCGTACTaGAATTCTCAGCATCCTGAGTATGGCATCTACAGG | + |
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Preference number: 6 (lower is better) Translates to: DPSWQLGPRSAY*NSQHPEYGIYR Trigger: CCTGTAGATGCCATACTCAGGATGCTGAGAATTCCAGTACGCACTTCTGGGGCCCAGTTGCCAACTGGGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142594.8 |
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| CDS CAA 72 bp | CGCCCACTGATAATCTCTGGAGATTTCTTCATGTCATaGATAGCAGCAATGGGGAGACCCCAGTTGGCAACT | + |
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Preference number: 6 (lower is better) Translates to: RPLIISGDFFMS*IAAMGRPQLAT Trigger: AGTTGCCAACTGGGGTCTCCCCATTGCTGCTATCAATGACATGAAGAAATCTCCAGAGATTATCAGTGGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000145402.8 ENSMUST00000155364.8 |
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| CDS TCA 72 bp | GCCAGTTTCGAGGTTGTACCTTGTAGGCAAATCTCATaGATGTCAGAGAATAGCAACAGAGGGCGAAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: ASFEVVPCRQIS*MSENSNRGRKS Trigger: TGACTTTCGCCCTCTGTTGCTATTCTCTGACATTCATGAGATTTGCCTACAAGGTACAACCTCGAAACTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046754.15 ENSMUST00000124023.8 ENSMUST00000130559.2 ENSMUST00000142594.8 ENSMUST00000155364.8 |
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