RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MOV10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002227

Ensembl transcript IDs: ENSMUST00000002297.12, ENSMUST00000106774.8, ENSMUST00000106775.8, ENSMUST00000136148.3, ENSMUST00000166979.8, ENSMUST00000168015.8

Found 298 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCATGGGCCATAGCACCCAGCGCCCCGTCAACTCTAGGGCCCGGTaGTGGACCCGAAGGGGCTGGCGGTTGAAGGTAAAGTTCACCTTG +
Preference number: 1 (lower is better)
Translates to: SMGHSTQRPVNSRAR*WTRRGWRLKVKFTL
Trigger: CAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGGGCGCTGGGTGCTATGGCCCATGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp AGGCAGCCCCTCCCAGCGGCAGAACCGTTCTCGATCCACCACATCTaGGCAGGCCTGCAGCTCTCCGTCGTAGTACAGCTGGTTAGGGAT +
Preference number: 1 (lower is better)
Translates to: RQPLPAAEPFSIHHI*AGLQLSVVVQLVRD
Trigger: ATCCCTAACCAGCTGTACTACGACGGAGAGCTGCAGGCCTGCGCAGATGTGGTGGATCGAGAACGGTTCTGCCGCTGGGAGGGGCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp CAGCGCCCCGTCAACTCTAGGGCCCGGTGCTGGACCCGAAGGGGCTaGCGGTTGAAGGTAAAGTTCACCTTGAAGGTCAGCCCATCCACA +
Preference number: 1 (lower is better)
Translates to: QRPVNSRARCWTRRG*RLKVKFTLKVSPST
Trigger: TGTGGATGGGCTGACCTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGGGCGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp ATGGGCCATAGCACCCAGCGCCCCGTCAACTCTAGGGCCCGGTGCTaGACCCGAAGGGGCTGGCGGTTGAAGGTAAAGTTCACCTTGAAG +
Preference number: 1 (lower is better)
Translates to: MGHSTQRPVNSRARC*TRRGWRLKVKFTLK
Trigger: CTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGGGCGCTGGGTGCTATGGCCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp ACTGTGGGCGACAGCCGCCAGGAATCGGGCAATGTAGAAAGTTTCTaGTCCTTCTGCTCCCGACTCCCCGGGTCCCAGGAGTTCCCAGAG +
Preference number: 1 (lower is better)
Translates to: TVGDSRQESGNVESF*SFCSRLPGSQEFPE
Trigger: CTCTGGGAACTCCTGGGACCCGGGGAGTCGGGAGCAGAAGGAGCAGAAACTTTCTACATTGCCCGATTCCTGGCGGCTGTCGCCCACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp GTCTCCAGGTCCAGTCCACGTTCGGCCAGAAAACTCTCGAACCTCTaGCCGGTCTCCCGGAGCTTTCGGCAGCTGAACTTGCTAGGCATC +
Preference number: 1 (lower is better)
Translates to: VSRSSPRSARKLSNL*PVSRSFRQLNLLGI
Trigger: GATGCCTAGCAAGTTCAGCTGCCGAAAGCTCCGGGAGACCGGCCAGAGGTTCGAGAGTTTTCTGGCCGAACGTGGACTGGACCTGGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 90 bp CTGGGTTCTGGGTCAGGGATAGGCAGCAATAAGGCTTGGCTGGTGTaGGAAGGCGGGCGGCTGTGGCCTCAGAGCTCATTTCTCCACTCT +
Preference number: 1 (lower is better)
Translates to: LGSGSGIGSNKAWLV*EGGRLWPQSSFLHS
Trigger: AGAGTGGAGAAATGAGCTCTGAGGCCACAGCCGCCCGCCTTCTCACACCAGCCAAGCCTTATTGCTGCCTATCCCTGACCCAGAACCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp AGGGTTAGTACCTCCTTGCGGTTCAAATCCAGGTGGATAAGGAGTTaGCCGTCTCGGGCTTCATGGGGCCCCTGGACCTCCACGTCTACC +
Preference number: 1 (lower is better)
Translates to: RVSTSLRFKSRWIRS*PSRASWGPWTSTST
Trigger: GGTAGACGTGGAGGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR GCA 90 bp GTAGAGGGGCTGAGTTTGCTCAGACCTTGGAGCAAGTCCTGTCCCTaGTGCAGGTCCAGTTTGGCAGGAAAGGGGCACCCGGTATATCCC +
Preference number: 1 (lower is better)
Translates to: VEGLSLLRPWSKSCP*CRSSLAGKGHPVYP
Trigger: GGGATATACCGGGTGCCCCTTTCCTGCCAAACTGGACCTGCAGCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACTCAGCCCCTCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp GCAGCTTGGGTTGTCTTCCCTAGCAGAGGAAGGGGCGGAATGGTCTaGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGGACAGGA +
Preference number: 1 (lower is better)
Translates to: AAWVVFPSRGRGGMV*AVNFPAFPSLAGTG
Trigger: TCCTGTCCCTGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCCTCTGCTAGGGAAGACAACCCAAGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CCA 90 bp TTCCGAAGCCGTAGGGTTAGTACCTCCTTGCGGTTCAAATCCAGGTaGATAAGGAGTTGCCCGTCTCGGGCTTCATGGGGCCCCTGGACC +
Preference number: 1 (lower is better)
Translates to: FRSRRVSTSLRFKSR*IRSCPSRASWGPWT
Trigger: GGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACGGCTTCGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp ACAGGGTCGTCCTGTTGGGTCTCAGAGGACAAAAGGGCAAAAAGGTaGTCACCTCGTAGCACTGAGGGACGGCTCTCTGCGACACCAGGA +
Preference number: 1 (lower is better)
Translates to: TGSSCWVSEDKRAKR*SPRSTEGRLSATPG
Trigger: TCCTGGTGTCGCAGAGAGCCGTCCCTCAGTGCTACGAGGTGACCACCTTTTTGCCCTTTTGTCCTCTGAGACCCAACAGGACGACCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp GCAGGCCGGGTGGTACCCCTCACAATGTGCTTCATGGCCTGCAGTTaGTCAGGGTTTGACTCCAGACTCCGATCGTACAGCTTGAACTTC +
Preference number: 1 (lower is better)
Translates to: AGRVVPLTMCFMACS*SGFDSRLRSYSLNF
Trigger: GAAGTTCAAGCTGTACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAAGCACATTGTGAGGGGTACCACCCGGCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp CAGAGGAGGTCAGCCCCTGAGTTGGATGGAGCACAGGCCAGGATGTaGGCTTTGGGCAAATGCTTCACTACCTGTTTGATGGCCTCCACT +
Preference number: 1 (lower is better)
Translates to: QRRSAPELDGAQARM*ALGKCFTTCLMAST
Trigger: AGTGGAGGCCATCAAACAGGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACCTCCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 90 bp GGCTCCATGCAGTGGCCAGCCTCATCGATGAAGATGTGTGTGAAGTaGTCGATGGGAAACTGGGCTGACACCAACCTGCTGGCAGTGATG +
Preference number: 1 (lower is better)
Translates to: GSMQWPASSMKMCVK*SMGNWADTNLLAVM
Trigger: CATCACTGCCAGCAGGTTGGTGTCAGCCCAGTTTCCCATCGATCACTTCACACACATCTTCATCGATGAGGCTGGCCACTGCATGGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp CCAGGAGTTCCCAGAGGACAGTGGCTGGGAAGTAACCCACAATGCTaGTCTTACAGTAGATGTGGAGTTCATAGCACTCACCGGGGCCCA +
Preference number: 1 (lower is better)
Translates to: PGVPRGQWLGSNPQC*SYSRCGVHSTHRGP
Trigger: TGGGCCCCGGTGAGTGCTATGAACTCCACATCTACTGTAAGACCAGCATTGTGGGTTACTTCCCAGCCACTGTCCTCTGGGAACTCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp CTCTGGCTGCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTaGCCTTGGAACTCTTCCACAGAGCCCACCTTCAAATCTTTGATG +
Preference number: 1 (lower is better)
Translates to: LWLLRTVEMRMTLRS*PWNSSTEPTFKSLM
Trigger: CATCAAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGCAGCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 90 bp GGCTTTACCCTTCTTGGAGGAAGGGGCCAGGAGTTGTTTCAGGTATaGCGTCACTGTAGCAGCCTCTTCAGGGTTGAAGAAGGATGGGCT +
Preference number: 1 (lower is better)
Translates to: GFTLLGGRGQELFQV*RHCSSLFRVEEGWA
Trigger: AGCCCATCCTTCTTCAACCCTGAAGAGGCTGCTACAGTGACGTCATACCTGAAACAACTCCTGGCCCCTTCCTCCAAGAAGGGTAAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 90 bp CTGCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTGGCCTTaGAACTCTTCCACAGAGCCCACCTTCAAATCTTTGATGTCATCC +
Preference number: 1 (lower is better)
Translates to: LLRTVEMRMTLRSWP*NSSTEPTFKSLMSS
Trigger: GGATGACATCAAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 90 bp CCCATGAAGGTACTCAGCCCTGTCGTGAAAGATCCTGGCCAACAGTaGTCTGTGTTGTTTGCTGATGTTCGACCCTGGCTTTATTCGCCT +
Preference number: 1 (lower is better)
Translates to: PMKVLSPVVKDPGQQ*SVLFADVRPWLYSP
Trigger: AGGCGAATAAAGCCAGGGTCGAACATCAGCAAACAACACAGATCACTGTTGGCCAGGATCTTTCACGACAGGGCTGAGTACCTTCATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR GCA 90 bp TTGCTGATGTTCGACCCTGGCTTTATTCGCCTCTTTTCTGGTAACTaGACATCAGCCCAGCGGTCTAGTTTGAAGAACCTGACCCGAGTC +
Preference number: 1 (lower is better)
Translates to: LLMFDPGFIRLFSGN*TSAQRSSLKNLTRV
Trigger: GACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAGGCGAATAAAGCCAGGGTCGAACATCAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR CCA 90 bp TTAAGGAAACCGAGGTTAAAGTCTAGATCCAGCTGTACAAAGCTCTaGCTGCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTGG +
Preference number: 1 (lower is better)
Translates to: LRKPRLKSRSSCTKL*LLRTVEMRMTLRSW
Trigger: CCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGCAGCCAGAGCTTTGTACAGCTGGATCTAGACTTTAACCTCGGTTTCCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp CTGGCAGTGATGAGGGTGGTAATTAAGACCCGATATTGCTGCAGGTaGTTCTTAGCAGGATACACATATTCTCCCTTCTTAGCATCCCAG +
Preference number: 1 (lower is better)
Translates to: LAVMRVVIKTRYCCR*FLAGYTYSPFLASQ
Trigger: CTGGGATGCTAAGAAGGGAGAATATGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCATCACTGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp AACCTGCTGGCAGTGATGAGGGTGGTAATTAAGACCCGATATTGCTaGAGGTGCTTCTTAGCAGGATACACATATTCTCCCTTCTTAGCA +
Preference number: 1 (lower is better)
Translates to: NLLAVMRVVIKTRYC*RCFLAGYTYSPFLA
Trigger: TGCTAAGAAGGGAGAATATGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCATCACTGCCAGCAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 90 bp ACCAACCTGCTGGCAGTGATGAGGGTGGTAATTAAGACCCGATATTaGTGCAGGTGCTTCTTAGCAGGATACACATATTCTCCCTTCTTA +
Preference number: 1 (lower is better)
Translates to: TNLLAVMRVVIKTRY*CRCFLAGYTYSPFL
Trigger: TAAGAAGGGAGAATATGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCATCACTGCCAGCAGGTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR GCA 90 bp GCTTCAGGGCTAGTGGCGAGCGCAGCACAGGCCCCAGCTGCCGAGGGTCTCCTGCCATTCGGATGTCCCTaGTGGGGGCCAGGAGACGGT +
Preference number: 2 (lower is better)
Translates to: ASGLVASAAQAPAAEGLLPFGCP*WGPGDG
Trigger: ACCGTCTCCTGGCCCCCAGCAGGGACATCCGAATGG...CAGGAGACCCTCGGCAGCTGGGGCCTGTGCTGCGCTCGCCACTAGCCCTGAAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR TCA 90 bp GCTTCAGGGCTAGTGGCGAGCGCAGCACAGGCCCCAGCTGCCGAGGGTCTCCTGCCTCCTTTGGGGCAGTaGAGATACTTGGTCCCTGAA +
Preference number: 2 (lower is better)
Translates to: ASGLVASAAQAPAAEGLLPPLGQ*RYLVPE
Trigger: TTCAGGGACCAAGTATCTTCACTGCCCCAAAGGAGG...CAGGAGACCCTCGGCAGCTGGGGCCTGTGCTGCGCTCGCCACTAGCCCTGAAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR TCA 90 bp CGCCCACATTTCGGGGGCTCAGGCGGGCTTTACCCTTCTTGGAGGAAGGGGCCAACCCCATGCTTCCCATaGAGGTACTCAGCCCTGTCG +
Preference number: 2 (lower is better)
Translates to: RPHFGGSGGLYPSWRKGPTPCFP*RYSALS
Trigger: CGACAGGGCTGAGTACCTTCATGGGAAGCATGGGGT...TGGCCCCTTCCTCCAAGAAGGGTAAAGCCCGCCTGAGCCCCCGAAATGTGGGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR TCA 90 bp GGCTGGTGTGAGAAGGCGGGCGGCTGTGGCCTCAGAGCTCATTTCTCCACTCTGGGTTGCCCACTACGATaGGCAAAGCCTTGGCTCGGG +
Preference number: 2 (lower is better)
Translates to: GWCEKAGGCGLRAHFSTLGCPLR*AKPWLG
Trigger: CCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACC...CAGAGTGGAGAAATGAGCTCTGAGGCCACAGCCGCCCGCCTTCTCACACCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR GCA 90 bp AGCCCTTGGCTCGGTCGGGCCTCTCTCCTTCCTCGATCCGGTTGGTCAACACAGGGCCTTCCCATCTCTTaGAGGGACAGGAGAGCTGGG +
Preference number: 2 (lower is better)
Translates to: SPWLGRASLLPRSGWSTQGLPIS*RDRRAG
Trigger: CCCAGCTCTCCTGTCCCTGCAAGAGATGGGAAGGCC...CTGTGTTGACCAACCGGATCGAGGAAGGAGAGAGGCCCGACCGAGCCAAGGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp CAGCCCCTCCCAGCGGCAGAACCGTTCTCGATCCACCACATCTGCGCAGGCCTGGGATGTCCAGGATGGTaGGGTGAGACCTGTAGTTGC +
Preference number: 2 (lower is better)
Translates to: QPLPAAEPFSIHHICAGLGCPGW*GETCSC
Trigger: GCAACTACAGGTCTCACCCCACCATCCTGGACATCC...CAGGCCTGCGCAGATGTGGTGGATCGAGAACGGTTCTGCCGCTGGGAGGGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR TCA 90 bp GCTTCAGGGCTAGTGGCGAGCGCAGCACAGGCCCCAGCTGCCGAGGGTCTCCTGAAGATGTGTGTGAAGTaGTCGATGGGAAACTGGGCT +
Preference number: 2 (lower is better)
Translates to: ASGLVASAAQAPAAEGLLKMCVK*SMGNWA
Trigger: AGCCCAGTTTCCCATCGATCACTTCACACACATCTT...CAGGAGACCCTCGGCAGCTGGGGCCTGTGCTGCGCTCGCCACTAGCCCTGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp CCCGTCAACTCTAGGGCCCGGTGCTGGACCCGAAGGGGCTGGCGGTaGAAGGTAAAGTTCACCTTGAAGGTCAGCCCATCCACAAATCGG +
Preference number: 2 (lower is better)
Translates to: PVNSRARCWTRRGWR*KVKFTLKVSPSTNR
Trigger: CCGATTTGTGGATGGGCTGACCTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR TCA 90 bp GAGGGCAGCAACGAGACCCCACGGGAGGCCACAGGAAAAAGCATGGGCCATAGCTCTCCAGCTGGGCCTTaGTCTCAGCAACCTCCTTTG +
Preference number: 2 (lower is better)
Translates to: EGSNETPREATGKSMGHSSPAGP*SQQPPL
Trigger: CAAAGGAGGTTGCTGAGATCAAGGCCCAGCTGGAGA...GCTATGGCCCATGCTTTTTCCTGTGGCCTCCCGTGGGGTCTCGTTGCTGCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCAATAAGGCTTGGCTaGTGTGAGAAGGCGGGCGGC +
Preference number: 2 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAIRLG*CEKAGG
Trigger: GCCGCCCGCCTTCTCACACCAGCCAAGCCTTATTGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR-3UTR CCA 90 bp CAGGTGGATAAGGAGTTGCCCGTCTCGGGCTTCATGGGGCCCCTGGACCTCCACCGGTTTAGAGTTGGCTaGTCTGAGCCTTCCTTTCGG +
Preference number: 2 (lower is better)
Translates to: QVDKELPVSGFMGPLDLHRFRVG*SEPSFR
Trigger: CCGAAAGGAAGGCTCAGACCAGCCAACTCTAAACCG...GTGGAGGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp GCCCCTCCCAGCGGCAGAACCGTTCTCGATCCACCACATCTGCGCAGGCCTGCACGGTTCAAATCCAGGTaGATAAGGAGTTGCCCGTCT +
Preference number: 2 (lower is better)
Translates to: APPSGRTVLDPPHLRRPARFKSR*IRSCPS
Trigger: AGACGGGCAACTCCTTATCCACCTGGATTTGAACCG...TGCAGGCCTGCGCAGATGTGGTGGATCGAGAACGGTTCTGCCGCTGGGAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp GGCTGGTGTGAGAAGGCGGGCGGCTGTGGCCTCAGAGCTCATTTCTCCACTCTGTGGACCCGAAGGGGCTaGCGGTTGAAGGTAAAGTTC +
Preference number: 2 (lower is better)
Translates to: GWCEKAGGCGLRAHFSTLWTRRG*RLKVKF
Trigger: GAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCA...CAGAGTGGAGAAATGAGCTCTGAGGCCACAGCCGCCCGCCTTCTCACACCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp GCCTGCAGTTGCTCAGGGTTTGACTCCAGACTCCGATCGTACAGCTaGAACTTCACATCTGAGGGCAGCAACGAGACCCCACGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: ACSCSGFDSRLRSYS*NFTSEGSNETPREA
Trigger: GGCCTCCCGTGGGGTCTCGTTGCTGCCCTCAGATGTGAAGTTCAAGCTGTACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp TCCAGGAACGTTTTCCAGTCTGGGTCGTGGCCTAGGAGGAGGGGGTaGCCCACTACGATGAGCAAAGCCTTGGCTCGGGTCACAGCAACA +
Preference number: 2 (lower is better)
Translates to: SRNVFQSGSWPRRRG*PTTMSKALARVTAT
Trigger: TGTTGCTGTGACCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACCCCCTCCTCCTAGGCCACGACCCAGACTGGAAAACGTTCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp GCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTGGCCTTGGAACTCTTCGGTCAGCCCCTGAGTTaGATGGAGCACAGGCCAGGA +
Preference number: 2 (lower is better)
Translates to: ASDGGDEDDAAFLALELFGQPLS*MEHRPG
Trigger: TCCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACC...GAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR TCA 90 bp GGCTGGTGTGAGAAGGCGGGCGGCTGTGGCCTCAGAGCTCATTTCTCCACTCTGAAGATACTTGGTCCCTaGAGAAGGGTAGGGAGCAGT +
Preference number: 2 (lower is better)
Translates to: GWCEKAGGCGLRAHFSTLKILGP*RRVGSS
Trigger: ACTGCTCCCTACCCTTCTTCAGGGACCAAGTATCTT...CAGAGTGGAGAAATGAGCTCTGAGGCCACAGCCGCCCGCCTTCTCACACCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR GCA 90 bp GATGAGCAAAGCCTTGGCTCGGGTCACAGCAACATTGAACCTCTTGGGGTTCTTAGCACAGGCCCCAGCTaGCGAGGGTCTCCTGCCAGT +
Preference number: 2 (lower is better)
Translates to: DEQSLGSGHSNIEPLGVLSTGPS*RGSPAS
Trigger: ACTGGCAGGAGACCCTCGGCAGCTGGGGCCTGTGCT...AAGAACCCCAAGAGGTTCAATGTTGCTGTGACCCGAGCCAAGGCTTTGCTCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGGAGAGCTGGGTTCTaGGTCAGGGATAGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARRAGF*VRDRQQ
Trigger: TTGCTGCCTATCCCTGACCCAGAACCCAGCTCTCCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 90 bp ACAGGTTTGCTTCCGCCGTTCCGAAGCCGTAGGGTTAGTACCTCCTaGCGGTTCAAATCCAGGTGGATAAGGAGTTGCCCGTCTCGGGCT +
Preference number: 2 (lower is better)
Translates to: TGLLPPFRSRRVSTS*RFKSRWIRSCPSRA
Trigger: AGCCCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACGGCTTCGGAACGGCGGAAGCAAACCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp CGGTGCTGGACCCGAAGGGGCTGGCGGTTGAAGGTAAAGTTCACCTaGAAGGTCAGCCCATCCACAAATCGGCTCAGGAGGCTTGTAGAA +
Preference number: 2 (lower is better)
Translates to: RCWTRRGWRLKVKFT*KVSPSTNRLRRLVE
Trigger: TTCTACAAGCCTCCTGAGCCGATTTGTGGATGGGCTGACCTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp GAGATGACGCCCACATTTCGGGGGCTCAGGCGGGCTTTACCCTTCTaGGAGGAAGGGGCCAGGAGTTGTTTCAGGTATGACGTCACTGTA +
Preference number: 2 (lower is better)
Translates to: EMTPTFRGLRRALPF*EEGARSCFRYDVTV
Trigger: TACAGTGACGTCATACCTGAAACAACTCCTGGCCCCTTCCTCCAAGAAGGGTAAAGCCCGCCTGAGCCCCCGAAATGTGGGCGTCATCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp TCGTGGCCTAGGAGGAGGGGGTTGCCCACTACGATGAGCAAAGCCTaGGCTCGGGTCACAGCAACATTGAACCTCTTGGGGTTCTTAAGG +
Preference number: 2 (lower is better)
Translates to: SWPRRRGLPTTMSKA*ARVTATLNLLGFLR
Trigger: CCTTAAGAACCCCAAGAGGTTCAATGTTGCTGTGACCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACCCCCTCCTCCTAGGCCACGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGCCTTCCCATCTCTTaGAGGGACAGGAGAGCTGGG +
Preference number: 2 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGLPIS*RDRRAG
Trigger: CCCAGCTCTCCTGTCCCTGCAAGAGATGGGAAGGCC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCAATAAGGCTTGGCTaGTGTGAGAAGGCGGGCGGC +
Preference number: 2 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAIRLG*CEKAGG
Trigger: GCCGCCCGCCTTCTCACACCAGCCAAGCCTTATTGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR-3UTR CCA 90 bp AGCAACGAGACCCCACGGGAGGCCACAGGAAAAAGCATGGGCCATAGCACCCAGGGCAGTGAAGATACTTaGTCCCTGAAGAAGGGTAGG +
Preference number: 2 (lower is better)
Translates to: SNETPREATGKSMGHSTQGSEDT*SLKKGR
Trigger: CCTACCCTTCTTCAGGGACCAAGTATCTTCACTGCC...CTGGGTGCTATGGCCCATGCTTTTTCCTGTGGCCTCCCGTGGGGTCTCGTTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp CTTGGCTGGTGTGAGAAGGCGGGCGGCTGTGGCCTCAGAGCTCATTTCTCCACTCTCAGCAACCTCCTTTaGGGCAGTGAAGATACTTGG +
Preference number: 2 (lower is better)
Translates to: LGWCEKAGGCGLRAHFSTLSNLL*GSEDTW
Trigger: CCAAGTATCTTCACTGCCCCAAAGGAGGTTGCTGAG...AGTGGAGAAATGAGCTCTGAGGCCACAGCCGCCCGCCTTCTCACACCAGCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp GAGGGACGGCTCTCTGCGACACCAGGAACCTCCAGGGTGAGCAGCCTGGGATTCTCACCTCATAGTTCCTaGATTTCAGGGTTGTCTCCA +
Preference number: 2 (lower is better)
Translates to: EGRLSATPGTSRVSSLGFSPHSS*ISGLSP
Trigger: TGGAGACAACCCTGAAATCCAGGAACTATGAGGTGA...GAATCCCAGGCTGCTCACCCTGGAGGTTCCTGGTGTCGCAGAGAGCCGTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp AGGTCAGCCCCTGAGTTGGATGGAGCACAGGCCAGGATGTGGGCTTaGGGCAAATGCTTCACTACCTGTTTGATGGCCTCCACTAATGTG +
Preference number: 2 (lower is better)
Translates to: RSAPELDGAQARMWA*GKCFTTCLMASTNV
Trigger: CACATTAGTGGAGGCCATCAAACAGGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp GCTCTGGCTGCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTaGGCCTTGGAACTCTTCCACAGAGCCCACCTTCAAATCTTTGAT +
Preference number: 2 (lower is better)
Translates to: ALAASDGGDEDDAAF*ALELFHRAHLQIFD
Trigger: ATCAAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGCAGCCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR GCA 90 bp GCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTGGCCTTGGAACTCTTCTTCATGGCCTGCAGTTaGTCAGGGTTTGACTCCAGA +
Preference number: 2 (lower is better)
Translates to: ASDGGDEDDAAFLALELFFMACS*SGFDSR
Trigger: TCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAA...GAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGGAGAGCTGGGTTCTaGGTCAGGGATAGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRRAGF*VRDRQQ
Trigger: TTGCTGCCTATCCCTGACCCAGAACCCAGCTCTCCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR-3UTR CCA 90 bp GTTAGTACCTCCTTGCGGTTCAAATCCAGGTGGATAAGGAGTTGCCCGTCTCGGAGGAGAGCTGGGTTCTaGGTCAGGGATAGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: VSTSLRFKSRWIRSCPSRRRAGF*VRDRQQ
Trigger: TTGCTGCCTATCCCTGACCCAGAACCCAGCTCTCCT...CCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp GCTGCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTGGCCTaGGAACTCTTCCACAGAGCCCACCTTCAAATCTTTGATGTCATC +
Preference number: 2 (lower is better)
Translates to: AASDGGDEDDAAFLA*ELFHRAHLQIFDVI
Trigger: GATGACATCAAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp ATTCGCCTCTTTTCTGGTAACTGCACATCAGCCCAGCGGTCTAGTTaGAAGAACCTGACCCGAGTCTTGGTGACGAAGGCCAGATTTGCG +
Preference number: 2 (lower is better)
Translates to: IRLFSGNCTSAQRSS*KNLTRVLVTKARFA
Trigger: CGCAAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAGGCGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR CAA 90 bp TGCACATCAGCCCAGCGGTCTAGTTTGAAGAACCTGACCCGAGTCTaGGTGACGAAGGCCAGATTTGCGATCTTCATTCCATACAGCATG +
Preference number: 2 (lower is better)
Translates to: CTSAQRSSLKNLTRV*VTKARFAIFIPYSM
Trigger: CATGCTGTATGGAATGAAGATCGCAAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGCTGATGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp GACGTCACTGTAGCAGCCTCTTCAGGGTTGAAGAAGGATGGGCTATaGCCTTCTCTCTCATCTTTGCCCATTACACCATGGAAAATGATG +
Preference number: 2 (lower is better)
Translates to: DVTVAASSGLKKDGL*PSLSSLPITPWKMM
Trigger: CATCATTTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTGCTACAGTGACGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 90 bp AGGAGTTGTTTCAGGTATGACGTCACTGTAGCAGCCTCTTCAGGGTaGAAGAAGGATGGGCTATTGCCTTCTCTCTCATCTTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: RSCFRYDVTVAASSG*KKDGLLPSLSSLPI
Trigger: AATGGGCAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTGCTACAGTGACGTCATACCTGAAACAACTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp CGAGCGCAGCACAGGCCCCAGCTGCCGAGGGTCTCCTaGCAGTACCAGCTGCCCTCCGGGATTGCCCGTTTC +
Preference number: 3 (lower is better)
Translates to: RAQHRPQLPRVS*QYQLPSGIARF
Trigger: GAAACGGGCAATCCCGGAGGGCAGCTGGTACTGGCAGGAGACCCTCGGCAGCTGGGGCCTGTGCTGCGCTCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp CATAGCACCCAGCGCCCCGTCAACTCTAGGGCCCGGTaGTGGACCCGAAGGGGCTGGCGGTTGAAGGTAAAG +
Preference number: 3 (lower is better)
Translates to: HSTQRPVNSRAR*WTRRGWRLKVK
Trigger: CTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGGGCGCTGGGTGCTATG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp AGCACCCAGCGCCCCGTCAACTCTAGGGCCCGGTGCTaGACCCGAAGGGGCTGGCGGTTGAAGGTAAAGTTC +
Preference number: 3 (lower is better)
Translates to: STQRPVNSRARC*TRRGWRLKVKF
Trigger: GAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGACGGGGCGCTGGGTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp CTCCCAGCGGCAGAACCGTTCTCGATCCACCACATCTaGGCAGGCCTGCAGCTCTCCGTCGTAGTACAGCTG +
Preference number: 3 (lower is better)
Translates to: LPAAEPFSIHHI*AGLQLSVVVQL
Trigger: CAGCTGTACTACGACGGAGAGCTGCAGGCCTGCGCAGATGTGGTGGATCGAGAACGGTTCTGCCGCTGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp TCCAGGTGGATAAGGAGTTGCCCGTCTCGGGCTTCATaGGGCCCCTGGACCTCCACGTCTACCCCATGCTTC +
Preference number: 3 (lower is better)
Translates to: SRWIRSCPSRAS*GPWTSTSTPCF
Trigger: GAAGCATGGGGTAGACGTGGAGGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR GCA 72 bp ACCTCCTTGCGGTTCAAATCCAGGTGGATAAGGAGTTaGCCGTCTCGGGCTTCATGGGGCCCCTGGACCTCC +
Preference number: 3 (lower is better)
Translates to: TSLRFKSRWIRS*PSRASWGPWTS
Trigger: GGAGGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR TCA 72 bp CTCCAGACTCCGATCGTACAGCTTGAACTTCACATCTaGGGGCAGCAACGAGACCCCACGGGAGGCCACAGG +
Preference number: 3 (lower is better)
Translates to: LQTPIVQLELHI*GQQRDPTGGHR
Trigger: CCTGTGGCCTCCCGTGGGGTCTCGTTGCTGCCCTCAGATGTGAAGTTCAAGCTGTACGATCGGAGTCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp GGCCGGGTGGTACCCCTCACAATGTGCTTCATGGCCTaGAGTTGCTCAGGGTTTGACTCCAGACTCCGATCG +
Preference number: 3 (lower is better)
Translates to: GRVVPLTMCFMA*SCSGFDSRLRS
Trigger: CGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAAGCACATTGTGAGGGGTACCACCCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp CTGAGTTTGCTCAGACCTTGGAGCAAGTCCTGTCCCTaGTGCAGGTCCAGTTTGGCAGGAAAGGGGCACCCG +
Preference number: 3 (lower is better)
Translates to: LSLLRPWSKSCP*CRSSLAGKGHP
Trigger: CGGGTGCCCCTTTCCTGCCAAACTGGACCTGCAGCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp TCCAGTCCACGTTCGGCCAGAAAACTCTCGAACCTCTaGCCGGTCTCCCGGAGCTTTCGGCAGCTGAACTTG +
Preference number: 3 (lower is better)
Translates to: SSPRSARKLSNL*PVSRSFRQLNL
Trigger: CAAGTTCAGCTGCCGAAAGCTCCGGGAGACCGGCCAGAGGTTCGAGAGTTTTCTGGCCGAACGTGGACTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp GCAGCCTGGGATTCTGGTCCACAGGGTCCCAGGTCATaGGTACCGAGTCCAGGTCATAGTGCCGGATGTCAT +
Preference number: 3 (lower is better)
Translates to: AAWDSGPQGPRS*VPSPGHSAGCH
Trigger: ATGACATCCGGCACTATGACCTGGACTCGGTACCCATGACCTGGGACCCTGTGGACCAGAATCCCAGGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp GTCAACTCTAGGGCCCGGTGCTGGACCCGAAGGGGCTaGCGGTTGAAGGTAAAGTTCACCTTGAAGGTCAGC +
Preference number: 3 (lower is better)
Translates to: VNSRARCWTRRG*RLKVKFTLKVS
Trigger: GCTGACCTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGAGTTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp GGCCCTGAGGTAGAGGGGCTGAGTTTGCTCAGACCTTaGAGCAAGTCCTGTCCCTGCTGCAGGTCCAGTTTG +
Preference number: 3 (lower is better)
Translates to: GPEVEGLSLLRP*SKSCPCCRSSL
Trigger: CAAACTGGACCTGCAGCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACTCAGCCCCTCTACCTCAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CAA 90 bp CAGCTGGTTAGGGATGTCCAGGATGGTGGGGTGAGACCTGTAGTTGCGGAGCAGCAGGTGGATAAGGAGTaGCCCGTCTCGGGCTTCATG +
Preference number: 3 (lower is better)
Translates to: QLVRDVQDGGVRPVVAEQQVDKE*PVSGFM
Trigger: CATGAAGCCCGAGACGGGCAACTCCTTATCCACCTG...CTGCTCCGCAACTACAGGTCTCACCCCACCATCCTGGACATCCCTAACCAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CAA 90 bp CTTTGGGGCAGTGAAGATACTTGGTCCCTGAAGAAGGGTAGGGAGCAGTTGTCGCGGCCTTCCCATCTCTaGCAGGGACAGGAGAGCTGG +
Preference number: 3 (lower is better)
Translates to: LWGSEDTWSLKKGREQLSRPSHL*QGQESW
Trigger: CCAGCTCTCCTGTCCCTGCAAGAGATGGGAAGGCCG...CGACAACTGCTCCCTACCCTTCTTCAGGGACCAAGTATCTTCACTGCCCCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACGGCCTTCCCATCTCTaGCAGGGACAGGAGAGCTGG +
Preference number: 3 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRPSHL*QGQESW
Trigger: CCAGCTCTCCTGTCCCTGCAAGAGATGGGAAGGCCG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR TCA 72 bp CCAGTACCAGCTGCCCTCCGGGATTGCCCGTTTCCTTaGCATCCATCAGTCCTGCTATGGCCACCAGACTCT +
Preference number: 3 (lower is better)
Translates to: PVPAALRDCPFP*HPSVLLWPPDS
Trigger: AGAGTCTGGTGGCCATAGCAGGACTGATGGATGTCAAGGAAACGGGCAATCCCGGAGGGCAGCTGGTACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp AGTTTGCTCAGACCTTGGAGCAAGTCCTGTCCCTGCTaGAGGTCCAGTTTGGCAGGAAAGGGGCACCCGGTA +
Preference number: 3 (lower is better)
Translates to: SLLRPWSKSCPC*RSSLAGKGHPV
Trigger: TACCGGGTGCCCCTTTCCTGCCAAACTGGACCTGCAGCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp CTTGGAGCAAGTCCTGTCCCTGCTGCAGGTCCAGTTTaGCAGGAAAGGGGCACCCGGTATATCCCCCGTTTT +
Preference number: 3 (lower is better)
Translates to: LGASPVPAAGPV*QERGTRYIPRF
Trigger: AAAACGGGGGATATACCGGGTGCCCCTTTCCTGCCAAACTGGACCTGCAGCAGGGACAGGACTTGCTCCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 72 bp AAGACAAACTGGGGCGTCCAGCACAGTGGGAATAGGTaGGTGAGGGTGACAGGTTTGCTTCCGCCGTTCCGA +
Preference number: 3 (lower is better)
Translates to: KTNWGVQHSGNR*VRVTGLLPPFR
Trigger: TCGGAACGGCGGAAGCAAACCTGTCACCCTCACTCACCTATTCCCACTGTGCTGGACGCCCCAGTTTGTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp TCCGGGATTGCCCGTTTCCTTGACATCCATCAGTCCTaGTATGGCCACCAGACTCTCAGGCTCCATGCAGTG +
Preference number: 3 (lower is better)
Translates to: SGIARFLDIHQS*YGHQTLRLHAV
Trigger: CACTGCATGGAGCCTGAGAGTCTGGTGGCCATAGCAGGACTGATGGATGTCAAGGAAACGGGCAATCCCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp GTTGTCTTCCCTAGCAGAGGAAGGGGCGGAATGGTCTaGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCA +
Preference number: 3 (lower is better)
Translates to: VVFPSRGRGGMV*AVNFPAFPSLA
Trigger: TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCCTCTGCTAGGGAAGACAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002297.12
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CCA 72 bp CGTAGGGTTAGTACCTCCTTGCGGTTCAAATCCAGGTaGATAAGGAGTTGCCCGTCTCGGGCTTCATGGGGC +
Preference number: 3 (lower is better)
Translates to: RRVSTSLRFKSR*IRSCPSRASWG
Trigger: GCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR CCA 72 bp TCCTGTTGGGTCTCAGAGGACAAAAGGGCAAAAAGGTaGTCACCTCGTAGCACTGAGGGACGGCTCTCTGCG +
Preference number: 3 (lower is better)
Translates to: SCWVSEDKRAKR*SPRSTEGRLSA
Trigger: CGCAGAGAGCCGTCCCTCAGTGCTACGAGGTGACCACCTTTTTGCCCTTTTGTCCTCTGAGACCCAACAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp TTACAGAACTCCAGGAACGTTTTCCAGTCTGGGTCGTaGCCTAGGAGGAGGGGGTTGCCCACTACGATGAGC +
Preference number: 3 (lower is better)
Translates to: LQNSRNVFQSGS*PRRRGLPTTMS
Trigger: GCTCATCGTAGTGGGCAACCCCCTCCTCCTAGGCCACGACCCAGACTGGAAAACGTTCCTGGAGTTCTGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR-3UTR CAA 90 bp GTAGTTGCGGAGCAGTTTGGTGATGAACTGGGGGTCATAGCCATTGGGGCCCTTACTAATGTGACAGTCTaGCCGGTACCTGGAGGCCCA +
Preference number: 3 (lower is better)
Translates to: VVAEQFGDELGVIAIGALTNVTV*PVPGGP
Trigger: TGGGCCTCCAGGTACCGGCAAGACTGTCACATTAGT...AAGGGCCCCAATGGCTATGACCCCCAGTTCATCACCAAACTGCTCCGCAACTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp CTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTTaGCCTTGGAACTCTTCCACAGAGCCCACCTTCAAA +
Preference number: 3 (lower is better)
Translates to: LRTVEMRMTLRS*PWNSSTEPTFK
Trigger: TTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 72 bp GGTCCAGTTCCACCTTGTGCACGAAACCCTTGTAGGTaGCAGGGTCGTCCTGTTGGGTCTCAGAGGACAAAA +
Preference number: 3 (lower is better)
Translates to: GPVPPCARNPCR*QGRPVGSQRTK
Trigger: TTTTGTCCTCTGAGACCCAACAGGACGACCCTGTCACCTACAAGGGTTTCGTGCACAAGGTGGAACTGGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp GATCTCAGCAACCTCCTTTGGGGCAGTGAAGATACTTaGTCCCTGAAGAAGGGTAGGGAGCAGTTGTCGGAG +
Preference number: 3 (lower is better)
Translates to: DLSNLLWGSEDT*SLKKGREQLSE
Trigger: CTCCGACAACTGCTCCCTACCCTTCTTCAGGGACCAAGTATCTTCACTGCCCCAAAGGAGGTTGCTGAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp TCAGCCCCTGAGTTGGATGGAGCACAGGCCAGGATGTaGGCTTTGGGCAAATGCTTCACTACCTGTTTGATG +
Preference number: 3 (lower is better)
Translates to: SAPELDGAQARM*ALGKCFTTCLM
Trigger: CATCAAACAGGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGGCCTGTGCTCCATCCAACTCAGGGGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp CCGAGGTTAAAGTCTAGATCCAGCTGTACAAAGCTCTaGCTGCTTCGGACGGTGGAGATGAGGATGACGCTG +
Preference number: 3 (lower is better)
Translates to: PRLKSRSSCTKL*LLRTVEMRMTL
Trigger: CAGCGTCATCCTCATCTCCACCGTCCGAAGCAGCCAGAGCTTTGTACAGCTGGATCTAGACTTTAACCTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp GAACCTGACCCGAGTCTTGGTGACGAAGGCCAGATTTaGGATCTTCATTCCATACAGCATGGAGGAGAAGCC +
Preference number: 3 (lower is better)
Translates to: EPDPSLGDEGQI*DLHSIQHGGEA
Trigger: GGCTTCTCCTCCATGCTGTATGGAATGAAGATCGCAAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CCA 72 bp ACGGTGGAGATGAGGATGACGCTGCGTTCTTGGCCTTaGAACTCTTCCACAGAGCCCACCTTCAAATCTTTG +
Preference number: 3 (lower is better)
Translates to: TVEMRMTLRSWP*NSSTEPTFKSL
Trigger: CAAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 72 bp GTACTCAGCCCTGTCGTGAAAGATCCTGGCCAACAGTaGTCTGTGTTGTTTGCTGATGTTCGACCCTGGCTT +
Preference number: 3 (lower is better)
Translates to: VLSPVVKDPGQQ*SVLFADVRPWL
Trigger: AAGCCAGGGTCGAACATCAGCAAACAACACAGATCACTGTTGGCCAGGATCTTTCACGACAGGGCTGAGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR TCA 72 bp CACAATGTGCTTCATGGCCTGCAGTTGCTCAGGGTTTaGCTCCAGACTCCGATCGTACAGCTTGAACTTCAC +
Preference number: 3 (lower is better)
Translates to: HNVLHGLQLLRV*LQTPIVQLELH
Trigger: GTGAAGTTCAAGCTGTACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAAGCACATTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR TCA 72 bp CTTCTTGGAGGAAGGGGCCAGGAGTTGTTTCAGGTATaGCGTCACTGTAGCAGCCTCTTCAGGGTTGAAGAA +
Preference number: 3 (lower is better)
Translates to: LLGGRGQELFQV*RHCSSLFRVEE
Trigger: TTCTTCAACCCTGAAGAGGCTGCTACAGTGACGTCATACCTGAAACAACTCCTGGCCCCTTCCTCCAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp TTCGACCCTGGCTTTATTCGCCTCTTTTCTGGTAACTaGACATCAGCCCAGCGGTCTAGTTTGAAGAACCTG +
Preference number: 3 (lower is better)
Translates to: FDPGFIRLFSGN*TSAQRSSLKNL
Trigger: CAGGTTCTTCAAACTAGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAGGCGAATAAAGCCAGGGTCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR TCA 72 bp CTTGGAACTCTTCCACAGAGCCCACCTTCAAATCTTTaGTGTCATCCAGTCCGCGAAGTTCTCGGTCAAGTT +
Preference number: 3 (lower is better)
Translates to: LGTLPQSPPSNL*CHPVREVLGQV
Trigger: AACTTGACCGAGAACTTCGCGGACTGGATGACATCAAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp GCAGTGATGAGGGTGGTAATTAAGACCCGATATTGCTaGAGGTGCTTCTTAGCAGGATACACATATTCTCCC +
Preference number: 3 (lower is better)
Translates to: AVMRVVIKTRYC*RCFLAGYTYSP
Trigger: GGGAGAATATGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCATCACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp CTGGCAGTGATGAGGGTGGTAATTAAGACCCGATATTaGTGCAGGTGCTTCTTAGCAGGATACACATATTCT +
Preference number: 3 (lower is better)
Translates to: LAVMRVVIKTRY*CRCFLAGYTYS
Trigger: AGAATATGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCATCACTGCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR GCA 72 bp ATGAGGGTGGTAATTAAGACCCGATATTGCTGCAGGTaGTTCTTAGCAGGATACACATATTCTCCCTTCTTA +
Preference number: 3 (lower is better)
Translates to: MRVVIKTRYCCR*FLAGYTYSPFL
Trigger: TAAGAAGGGAGAATATGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCGGGTCTTAATTACCACCCTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp CTCTGGCCGGTCTCCCGGAGCTTTCGGCAGCTGAACTaGCTAGGCATCGCGGCGGCGGCGGCTGCGGCCCAG +
Preference number: 4 (lower is better)
Translates to: LWPVSRSFRQLN*LGIAAAAAAAQ
Trigger: CTGGGCCGCAGCCGCCGCCGCCGCGATGCCTAGCAAGTTCAGCTGCCGAAAGCTCCGGGAGACCGGCCAGAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATGGACCCGGAGCCGCTaGCAGAGGAGGTCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAWTRSR*QRRSAP
Trigger: AGGGGCTGACCTCCTCTGTCAGCGGCTCCGGGTCCA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCGTCTCGGGCTTCATaGGGCCCCTGGACCTCCACG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPSRAS*GPWTST
Trigger: CGTGGAGGTCCAGGGGCCCCATGAAGCCCGAGACGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACTGGAGGCCCAAAGATaGTGTAGGGGGCAGGCCGGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLALEAQR*CRGQAG
Trigger: CCCGGCCTGCCCCCTACATCATCTTTGGGCCTCCAG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATCCGGTACGGGGAGATaGCGCCCACATTTCGGGGGC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASGTGR*RPHFGG
Trigger: GCCCCCGAAATGTGGGCGTCATCTCCCCGTACCGGA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGTGACGGCGGGGCCCTaGGGTAGAGGGGCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAVTAGP*GRGAEF
Trigger: AAACTCAGCCCCTCTACCTCAGGGCCCCGCCGTCAC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACTGCCGAGGGTCTCCTaGCAGTACCAGCTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLALPRVS*QYQLPS
Trigger: GGAGGGCAGCTGGTACTGGCAGGAGACCCTCGGCAG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGCACAGGCCCCAGCTaGCGAGGGTCTCCTGCCAGT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASTGPS*RGSPAS
Trigger: ACTGGCAGGAGACCCTCGGCAGCTGGGGCCTGTGCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCAGCCAGGGGACTGTaGGCGACAGCCGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAARGL*ATAARN
Trigger: ATTCCTGGCGGCTGTCGCCCACAGTCCCCTGGCTGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGACGGTAGATGGAGCTaGGCAGGTGGACCCGGAGCC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLADGRWS*AGGPGA
Trigger: GGCTCCGGGTCCACCTGCCCAGCTCCATCTACCGTC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCATTCGGATGTCCCTaGTGGGGGCCAGGAGACGGT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPFGCP*WGPGDG
Trigger: ACCGTCTCCTGGCCCCCAGCAGGGACATCCGAATGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCTGCCAGTACCAGCTaGCCTCCGGGATTGCCCGTT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPASTS*PPGLPV
Trigger: AACGGGCAATCCCGGAGGGCAGCTGGTACTGGCAGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp TCTAGGGCCCGGTGCTGGACCCGAAGGGGCTGGCGGTaGAAGGTAAAGTTCACCTTGAAGGTCAGCCCATCC +
Preference number: 4 (lower is better)
Translates to: SRARCWTRRGWR*KVKFTLKVSPS
Trigger: GGATGGGCTGACCTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCAGCACCGGGCCCTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATGGACCCGGAGCCGCTaGCAGAGGAGGTCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRWTRSR*QRRSAP
Trigger: AGGGGCTGACCTCCTCTGTCAGCGGCTCCGGGTCCA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGTTGCCCACTACGATaGGCAAAGCCTTGGCTCGGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAGCPLR*AKPWLG
Trigger: CCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCGTCTCGGGCTTCATaGGGCCCCTGGACCTCCACG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPSRAS*GPWTST
Trigger: CGTGGAGGTCCAGGGGCCCCATGAAGCCCGAGACGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGTCAGCCCCTGAGTTaGATGGAGCACAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAGQPLS*MEHRPG
Trigger: TCCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATTCGGATGTCCCTGCTaGGGGCCAGGAGACGGTAGA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAFGCPC*GPGDGR
Trigger: TCTACCGTCTCCTGGCCCCCAGCAGGGACATCCGAA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp TACCTCCTTGCGGTTCAAATCCAGGTGGATAAGGAGTaGCCCGTCTCGGGCTTCATGGGGCCCCTGGACCTC +
Preference number: 4 (lower is better)
Translates to: YLLAVQIQVDKE*PVSGFMGPLDL
Trigger: GAGGTCCAGGGGCCCCATGAAGCCCGAGACGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR CAA 72 bp GCCAGTACCAGCTGCCCTCCGGGATTGCCCGTTTCCTaGACATCCATCAGTCCTGCTATGGCCACCAGACTC +
Preference number: 4 (lower is better)
Translates to: ASTSCPPGLPVS*TSISPAMATRL
Trigger: GAGTCTGGTGGCCATAGCAGGACTGATGGATGTCAAGGAAACGGGCAATCCCGGAGGGCAGCTGGTACTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp CGAGGGTCTCCTGCCAGTACCAGCTGCCCTCCGGGATaGCCCGTTTCCTTGACATCCATCAGTCCTGCTATG +
Preference number: 4 (lower is better)
Translates to: RGSPASTSCPPG*PVSLTSISPAM
Trigger: CATAGCAGGACTGATGGATGTCAAGGAAACGGGCAATCCCGGAGGGCAGCTGGTACTGGCAGGAGACCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAACCCCATGCTTCCCATaGAGGTACTCAGCCCTGTCG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLATPCFP*RYSALS
Trigger: CGACAGGGCTGAGTACCTTCATGGGAAGCATGGGGT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACGAAACCCTTGTAGGTaGCAGGGTCGTCCTGTTGGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARNPCR*QGRPVG
Trigger: CCCAACAGGACGACCCTGTCACCTACAAGGGTTTCG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACTGGAGGCCCAAAGATaGTGTAGGGGGCAGGCCGGG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLEAQR*CRGQAG
Trigger: CCCGGCCTGCCCCCTACATCATCTTTGGGCCTCCAG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATCCGGTACGGGGAGATaGCGCCCACATTTCGGGGGC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSGTGR*RPHFGG
Trigger: GCCCCCGAAATGTGGGCGTCATCTCCCCGTACCGGA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGTGACGGCGGGGCCCTaGGGTAGAGGGGCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRVTAGP*GRGAEF
Trigger: AAACTCAGCCCCTCTACCTCAGGGCCCCGCCGTCAC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGACTCTCAGGCTCCATaGAGTGGCCAGCCTCATCGA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLADSQAP*SGQPHR
Trigger: TCGATGAGGCTGGCCACTGCATGGAGCCTGAGAGTC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACTGCCGAGGGTCTCCTaGCAGTACCAGCTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLPRVS*QYQLPS
Trigger: GGAGGGCAGCTGGTACTGGCAGGAGACCCTCGGCAG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGCACAGGCCCCAGCTaGCGAGGGTCTCCTGCCAGT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSTGPS*RGSPAS
Trigger: ACTGGCAGGAGACCCTCGGCAGCTGGGGCCTGTGCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCAGCCAGGGGACTGTaGGCGACAGCCGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAARGL*ATAARN
Trigger: ATTCCTGGCGGCTGTCGCCCACAGTCCCCTGGCTGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACAGGGTCCCAGGTCATaGGTACCGAGTCCAGGTCAT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAQGPRS*VPSPGH
Trigger: ATGACCTGGACTCGGTACCCATGACCTGGGACCCTG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATCTCCAGCTGGGCCTTaGTCTCAGCAACCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASPAGP*SQQPPL
Trigger: CAAAGGAGGTTGCTGAGATCAAGGCCCAGCTGGAGA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATGGCCTCCACTAATGTaGCAGTCTTGCCGGTACCTG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAWPPLM*QSCRYL
Trigger: CAGGTACCGGCAAGACTGTCACATTAGTGGAGGCCA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGGTGGATAAGGAGTTaGCCGTCTCGGGCTTCATGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARWIRS*PSRASW
Trigger: CCATGAAGCCCGAGACGGGCAACTCCTTATCCACCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCATTCGGATGTCCCTaGTGGGGGCCAGGAGACGGT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPFGCP*WGPGDG
Trigger: ACCGTCTCCTGGCCCCCAGCAGGGACATCCGAATGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCTGCCAGTACCAGCTaGCCTCCGGGATTGCCCGTT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPASTS*PPGLPV
Trigger: AACGGGCAATCCCGGAGGGCAGCTGGTACTGGCAGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAAACTCTCGAACCTCTaGCCGGTCTCCCGGAGCTTT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAKLSNL*PVSRSF
Trigger: AAAGCTCCGGGAGACCGGCCAGAGGTTCGAGAGTTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATGGACCCGAAGGGGCTaGCGGTTGAAGGTAAAGTTC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAWTRRG*RLKVKF
Trigger: GAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCACAGGCCAGGATGTaGGCTTTGGGCAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAQARM*ALGKCF
Trigger: GAAGCATTTGCCCAAAGCCCACATCCTGGCCTGTGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATCAGGCTCCATGCAGTaGCCAGCCTCATCGATGAAG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASGSMQ*PASSMK
Trigger: CTTCATCGATGAGGCTGGCCACTGCATGGAGCCTGA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCATCAGTCCTGCTATaGCCACCAGACTCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPSVLL*PPDSQA
Trigger: AGCCTGAGAGTCTGGTGGCCATAGCAGGACTGATGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGATGTCCAGGATGGTaGGGTGAGACCTGTAGTTGC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAGCPGW*GETCSC
Trigger: GCAACTACAGGTCTCACCCCACCATCCTGGACATCC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp AGGAGGAGGGGGTTGCCCACTACGATGAGCAAAGCCTaGGCTCGGGTCACAGCAACATTGAACCTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: RRRGLPTTMSKA*ARVTATLNLLG
Trigger: CCCCAAGAGGTTCAATGTTGCTGTGACCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACCCCCTCCTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACACAGTGGGAATAGGTaGGTGAGGGTGACAGGTTTG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAHSGNR*VRVTGL
Trigger: CAAACCTGTCACCCTCACTCACCTATTCCCACTGTG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCTCCTTTGGGGCAGTaGAGATACTTGGTCCCTGAA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPPLGQ*RYLVPE
Trigger: TTCAGGGACCAAGTATCTTCACTGCCCCAAAGGAGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACAGTTGCTCAGGGTTTaGCTCCAGACTCCGATCGTA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAQLLRV*LQTPIV
Trigger: TACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACAGCCTCTTCAGGGTTaGAGAAGGATGGGCTATTGC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAQPLQG*RRMGYC
Trigger: GCAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGTTGCCCACTACGATaGGCAAAGCCTTGGCTCGGG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGCPLR*AKPWLG
Trigger: CCCGAGCCAAGGCTTTGCTCATCGTAGTGGGCAACC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGTTTCTGCTCCTTCTaGTCCCGACTCCCCGGGTCC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSFCSF*SRLPGS
Trigger: GGACCCGGGGAGTCGGGAGCAGAAGGAGCAGAAACT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATCGATCCACCACATCTaGGCAGGCCTGCAGCTCTCC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSIHHI*AGLQLS
Trigger: GGAGAGCTGCAGGCCTGCGCAGATGTGGTGGATCGA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATCATTCCATACAGCATaGAGGAGAAGCCAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASFHTA*RRSQGQ
Trigger: CTGCCCCTGGCTTCTCCTCCATGCTGTATGGAATGA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGTTCCCAGAGGACAGTaGCTGGGAAGTAACCCACAA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAVPRGQ*LGSNPQ
Trigger: TTGTGGGTTACTTCCCAGCCACTGTCCTCTGGGAAC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAACAGGGTCGTCCTGTTaGGTCTCAGAGGACAAAAGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLATGSSC*VSEDKR
Trigger: CCTTTTGTCCTCTGAGACCCAACAGGACGACCCTGT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGTCAGCCCCTGAGTTaGATGGAGCACAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGQPLS*MEHRPG
Trigger: TCCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATTCGGATGTCCCTGCTaGGGGCCAGGAGACGGTAGA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRFGCPC*GPGDGR
Trigger: TCTACCGTCTCCTGGCCCCCAGCAGGGACATCCGAA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGGGGTCATAGCCATTaGGGCCCTTCTTATACAAGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAGGHSH*GPSYTR
Trigger: CCTTGTATAAGAAGGGCCCCAATGGCTATGACCCCC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGTTTGCTCAGACCTTaGAGCAAGTCCTGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASLLRP*SKSCPC
Trigger: GCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp CTTCCGCCGTTCCGAAGCCGTAGGGTTAGTACCTCCTaGCGGTTCAAATCCAGGTGGATAAGGAGTTGCCCG +
Preference number: 4 (lower is better)
Translates to: LPPFRSRRVSTS*RFKSRWIRSCP
Trigger: CGGGCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACGGCTTCGGAACGGCGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp ACCCGAAGGGGCTGGCGGTTGAAGGTAAAGTTCACCTaGAAGGTCAGCCCATCCACAAATCGGCTCAGGAGG +
Preference number: 4 (lower is better)
Translates to: TRRGWRLKVKFT*KVSPSTNRLRR
Trigger: CCTCCTGAGCCGATTTGTGGATGGGCTGACCTTCAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp GCTTCGGACGGTGGAGATGAGGATGACGCTGCGTTCTaGGCCTTGGAACTCTTCCACAGAGCCCACCTTCAA +
Preference number: 4 (lower is better)
Translates to: ASDGGDEDDAAF*ALELFHRAHLQ
Trigger: TTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTCCGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAACCCCATGCTTCCCATaGAGGTACTCAGCCCTGTCG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRTPCFP*RYSALS
Trigger: CGACAGGGCTGAGTACCTTCATGGGAAGCATGGGGT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAAGATACTTGGTCCCTaGAGAAGGGTAGGGAGCAGT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAKILGP*RRVGSS
Trigger: ACTGCTCCCTACCCTTCTTCAGGGACCAAGTATCTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACTCTTTTCTGGTAACTaGACATCAGCCCAGCGGTCT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLALFSGN*TSAQRS
Trigger: AGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGGTTAGTACCTCCTTaGGGTTCAAATCCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAGLVPP*GSNPGG
Trigger: TCCACCTGGATTTGAACCGCAAGGAGGTACTAACCC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATGCAGCTCTTCCAGGTaGAGCAGCAGCCGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRCSSSR*SSSRSF
Trigger: GAAACTCCGGCTGCTGCTGCACCTGGAAGAGCTGCA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATTCATGGCCTGCAGTTaGTCAGGGTTTGACTCCAGA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAFMACS*SGFDSR
Trigger: TCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACGGTTCAAATCCAGGTaGATAAGGAGTTGCCCGTCT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARFKSR*IRSCPS
Trigger: AGACGGGCAACTCCTTATCCACCTGGATTTGAACCG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGGCAGTGAAGATACTTaGTCCCTGAAGAAGGGTAGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAGSEDT*SLKKGR
Trigger: CCTACCCTTCTTCAGGGACCAAGTATCTTCACTGCC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACTCAGCAACCTCCTTTaGGGCAGTGAAGATACTTGG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLALSNLL*GSEDTW
Trigger: CCAAGTATCTTCACTGCCCCAAAGGAGGTTGCTGAG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGTCTTGCCGGTACCTaGAGGCCCAAAGATGATGTA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASLAGT*RPKDDV
Trigger: TACATCATCTTTGGGCCTCCAGGTACCGGCAAGACT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCAGGATGTGGGCTTTaGGCAAATGCTTCACTACCT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPGCGL*ANASLP
Trigger: AGGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAATGACGCTGCGTTCTTaGCCTTGGAACTCTTCCACA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAMTLRS*PWNSST
Trigger: TGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCAT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATCTCCAGCTGGGCCTTaGTCTCAGCAACCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSPAGP*SQQPPL
Trigger: CAAAGGAGGTTGCTGAGATCAAGGCCCAGCTGGAGA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATGGCCTCCACTAATGTaGCAGTCTTGCCGGTACCTG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRWPPLM*QSCRYL
Trigger: CAGGTACCGGCAAGACTGTCACATTAGTGGAGGCCA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAAGATGTGTGTGAAGTaGTCGATGGGAAACTGGGCT +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAKMCVK*SMGNWA
Trigger: AGCCCAGTTTCCCATCGATCACTTCACACACATCTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCACCTTCAAATCTTTaGTGTCATCCAGTCCGCGAA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPPSNL*CHPVRE
Trigger: TTCGCGGACTGGATGACATCAAAGATTTGAAGGTGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAGTCCTGTCCCTGCTaGAGGTCCAGTTTGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKSCPC*RSSLAG
Trigger: TCCTGCCAAACTGGACCTGCAGCAGGGACAGGACTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGCAAGTCCTGTCCCTaGTGCAGGTCCAGTTTGGCA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSKSCP*CRSSLA
Trigger: TGCCAAACTGGACCTGCAGCAGGGACAGGACTTGCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAACTCTCGAACCTCTaGCCGGTCTCCCGGAGCTTT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKLSNL*PVSRSF
Trigger: AAAGCTCCGGGAGACCGGCCAGAGGTTCGAGAGTTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAAAAGGGCAAAAAGGTaGTCACCTCGTAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAKRAKR*SPRSTE
Trigger: CTCAGTGCTACGAGGTGACCACCTTTTTGCCCTTTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATGGACCCGAAGGGGCTaGCGGTTGAAGGTAAAGTTC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRWTRRG*RLKVKF
Trigger: GAACTTTACCTTCAACCGCCAGCCCCTTCGGGTCCA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCACAGGCCAGGATGTaGGCTTTGGGCAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAQARM*ALGKCF
Trigger: GAAGCATTTGCCCAAAGCCCACATCCTGGCCTGTGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATCAGGCTCCATGCAGTaGCCAGCCTCATCGATGAAG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSGSMQ*PASSMK
Trigger: CTTCATCGATGAGGCTGGCCACTGCATGGAGCCTGA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCATCAGTCCTGCTATaGCCACCAGACTCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPSVLL*PPDSQA
Trigger: AGCCTGAGAGTCTGGTGGCCATAGCAGGACTGATGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGATGTCCAGGATGGTaGGGTGAGACCTGTAGTTGC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGCPGW*GETCSC
Trigger: GCAACTACAGGTCTCACCCCACCATCCTGGACATCC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATTGCCCATTACACCATaGAAAATGATGGGGAAGCCC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLALPITP*KMMGKP
Trigger: GGGCTTCCCCATCATTTTCCATGGTGTAATGGGCAA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGGGTTGAAGAAGGATaGGCTATTGCCTTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARVEEG*AIAFSL
Trigger: GAGAGAGAAGGCAATAGCCCATCCTTCTTCAACCCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGGCTTTACCCTTCTTaGAGGAAGGGGCCAGGAGTT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGLYPS*RKGPGV
Trigger: AACTCCTGGCCCCTTCCTCCAAGAAGGGTAAAGCCC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACTGCGTTCTTGGCCTTaGAACTCTTCCACAGAGCCC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLRSWP*NSSTEP
Trigger: GGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp GTGCACGAAACCCTTGTAGGTGACAGGGTCGTCCTGTaGGGTCTCAGAGGACAAAAGGGCAAAAAGGTGGTC +
Preference number: 4 (lower is better)
Translates to: VHETLVGDRVVL*GLRGQKGKKVV
Trigger: GACCACCTTTTTGCCCTTTTGTCCTCTGAGACCCAACAGGACGACCCTGTCACCTACAAGGGTTTCGTGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp TGCTCAGGGTTTGACTCCAGACTCCGATCGTACAGCTaGAACTTCACATCTGAGGGCAGCAACGAGACCCCA +
Preference number: 4 (lower is better)
Translates to: CSGFDSRLRSYS*NFTSEGSNETP
Trigger: TGGGGTCTCGTTGCTGCCCTCAGATGTGAAGTTCAAGCTGTACGATCGGAGTCTGGAGTCAAACCCTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACACAGTGGGAATAGGTaGGTGAGGGTGACAGGTTTG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRHSGNR*VRVTGL
Trigger: CAAACCTGTCACCCTCACTCACCTATTCCCACTGTG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCTCCTTTGGGGCAGTaGAGATACTTGGTCCCTGAA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPPLGQ*RYLVPE
Trigger: TTCAGGGACCAAGTATCTTCACTGCCCCAAAGGAGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACAGTTGCTCAGGGTTTaGCTCCAGACTCCGATCGTA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRQLLRV*LQTPIV
Trigger: TACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACAGCCTCTTCAGGGTTaGAGAAGGATGGGCTATTGC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRQPLQG*RRMGYC
Trigger: GCAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGACGAAGGCCAGATTTaGGATCTTCATTCCATACAG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLADEGQI*DLHSIQ
Trigger: CTGTATGGAATGAAGATCGCAAATCTGGCCTTCGTC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAATGTAGAAAGTTTCTaGTCCTTCTGCTCCCGACTC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLANVESF*SFCSRL
Trigger: GAGTCGGGAGCAGAAGGAGCAGAAACTTTCTACATT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATGGGCTTTGGGCAAATaGTTCACTACCTGTTTGATG +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAWALGK*FTTCLM
Trigger: CATCAAACAGGTAGTGAAGCATTTGCCCAAAGCCCA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACGATATTGCTGCAGGTaGTTCTTAGCAGGATACACA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARYCCR*FLAGYT
Trigger: TGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGAAGGATGGGCTATTaGCTTCTCTCTCATCTTTGC +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARRMGY*LLSHLC
Trigger: GCAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp AGCCGTAGGGTTAGTACCTCCTTGCGGTTCAAATCCAGGTGGATAAGGAGTTGCAAACTCTCGAACCTCTaGCCGGTCTCCCGGAGCTTT +
Preference number: 4 (lower is better)
Translates to: SRRVSTSLRFKSRWIRSCKLSNL*PVSRSF
Trigger: AAAGCTCCGGGAGACCGGCCAGAGGTTCGAGAGTTT...GCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136148.3
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGTTCCCAGAGGACAGTaGCTGGGAAGTAACCCACAA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRVPRGQ*LGSNPQ
Trigger: TTGTGGGTTACTTCCCAGCCACTGTCCTCTGGGAAC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATCACCTCATAGTTCCTaGATTTCAGGGTTGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASPHSS*ISGLSP
Trigger: TGGAGACAACCCTGAAATCCAGGAACTATGAGGTGA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAACAGGGTCGTCCTGTTaGGTCTCAGAGGACAAAAGG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRTGSSC*VSEDKR
Trigger: CCTTTTGTCCTCTGAGACCCAACAGGACGACCCTGT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGGGGTCATAGCCATTaGGGCCCTTCTTATACAAGG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGGHSH*GPSYTR
Trigger: CCTTGTATAAGAAGGGCCCCAATGGCTATGACCCCC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGTTTGCTCAGACCTTaGAGCAAGTCCTGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSLLRP*SKSCPC
Trigger: GCAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp GCCCAGCGGTCTAGTTTGAAGAACCTGACCCGAGTCTaGGTGACGAAGGCCAGATTTGCGATCTTCATTCCA +
Preference number: 4 (lower is better)
Translates to: AQRSSLKNLTRV*VTKARFAIFIP
Trigger: TGGAATGAAGATCGCAAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp TTTTCTGGTAACTGCACATCAGCCCAGCGGTCTAGTTaGAAGAACCTGACCCGAGTCTTGGTGACGAAGGCC +
Preference number: 4 (lower is better)
Translates to: FSGNCTSAQRSS*KNLTRVLVTKA
Trigger: GGCCTTCGTCACCAAGACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGCTGATGTGCAGTTACCAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
3UTR CAA 72 bp ACAAATCGGCTCAGGAGGCTTGTAGAAAAGCTCAGCTaGACACGGTCCAGTTCCACCTTGTGCACGAAACCC +
Preference number: 4 (lower is better)
Translates to: TNRLRRLVEKLS*TRSSSTLCTKP
Trigger: GGGTTTCGTGCACAAGGTGGAACTGGACCGTGTCAAGCTGAGCTTTTCTACAAGCCTCCTGAGCCGATTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
3UTR CAA 72 bp GACGGTGGAGATGAGGATGACGCTGCGTTCTTGGCCTaGGAACTCTTCCACAGAGCCCACCTTCAAATCTTT +
Preference number: 4 (lower is better)
Translates to: DGGDEDDAAFLA*ELFHRAHLQIF
Trigger: AAAGATTTGAAGGTGGGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCATCCTCATCTCCACCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAGATACTTGGTCCCTaGAGAAGGGTAGGGAGCAGT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKILGP*RRVGSS
Trigger: ACTGCTCCCTACCCTTCTTCAGGGACCAAGTATCTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACTCTTTTCTGGTAACTaGACATCAGCCCAGCGGTCT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLFSGN*TSAQRS
Trigger: AGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGGTTAGTACCTCCTTaGGGTTCAAATCCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGLVPP*GSNPGG
Trigger: TCCACCTGGATTTGAACCGCAAGGAGGTACTAACCC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATTCATGGCCTGCAGTTaGTCAGGGTTTGACTCCAGA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRFMACS*SGFDSR
Trigger: TCTGGAGTCAAACCCTGAGCAACTGCAGGCCATGAA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACGGTTCAAATCCAGGTaGATAAGGAGTTGCCCGTCT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRFKSR*IRSCPS
Trigger: AGACGGGCAACTCCTTATCCACCTGGATTTGAACCG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGTAACCCACAATGCTaGTCTTACAGTAGATGTGGA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASNPQC*SYSRCG
Trigger: TCCACATCTACTGTAAGACCAGCATTGTGGGTTACT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGGCAGTGAAGATACTTaGTCCCTGAAGAAGGGTAGG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRGSEDT*SLKKGR
Trigger: CCTACCCTTCTTCAGGGACCAAGTATCTTCACTGCC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACTCAGCAACCTCCTTTaGGGCAGTGAAGATACTTGG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLSNLL*GSEDTW
Trigger: CCAAGTATCTTCACTGCCCCAAAGGAGGTTGCTGAG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGTCTTGCCGGTACCTaGAGGCCCAAAGATGATGTA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSLAGT*RPKDDV
Trigger: TACATCATCTTTGGGCCTCCAGGTACCGGCAAGACT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCAGGATGTGGGCTTTaGGCAAATGCTTCACTACCT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPGCGL*ANASLP
Trigger: AGGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAATGACGCTGCGTTCTTaGCCTTGGAACTCTTCCACA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRMTLRS*PWNSST
Trigger: TGTGGAAGAGTTCCAAGGCCAAGAACGCAGCGTCAT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAGATGTGTGTGAAGTaGTCGATGGGAAACTGGGCT +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKMCVK*SMGNWA
Trigger: AGCCCAGTTTCCCATCGATCACTTCACACACATCTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCACCTTCAAATCTTTaGTGTCATCCAGTCCGCGAA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPPSNL*CHPVRE
Trigger: TTCGCGGACTGGATGACATCAAAGATTTGAAGGTGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACTTCTCTCTCATCTTTaGCCATTACACCATGGAAAA +
Preference number: 4 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLALLSHL*PLHHGK
Trigger: TTTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAAAGGGCAAAAAGGTaGTCACCTCGTAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKRAKR*SPRSTE
Trigger: CTCAGTGCTACGAGGTGACCACCTTTTTGCCCTTTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATTGCCCATTACACCATaGAAAATGATGGGGAAGCCC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLPITP*KMMGKP
Trigger: GGGCTTCCCCATCATTTTCCATGGTGTAATGGGCAA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGGGTTGAAGAAGGATaGGCTATTGCCTTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRVEEG*AIAFSL
Trigger: GAGAGAGAAGGCAATAGCCCATCCTTCTTCAACCCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR TCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAATCTGTGTTGTTTGCTaGTGTTCGACCCTGGCTTTA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRICVVC*CSTLAL
Trigger: TAAAGCCAGGGTCGAACATCAGCAAACAACACAGAT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGACGAAGGCCAGATTTaGGATCTTCATTCCATACAG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRDEGQI*DLHSIQ
Trigger: CTGTATGGAATGAAGATCGCAAATCTGGCCTTCGTC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAATGTAGAAAGTTTCTaGTCCTTCTGCTCCCGACTC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRNVESF*SFCSRL
Trigger: GAGTCGGGAGCAGAAGGAGCAGAAACTTTCTACATT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATGGGCTTTGGGCAAATaGTTCACTACCTGTTTGATG +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRWALGK*FTTCLM
Trigger: CATCAAACAGGTAGTGAAGCATTTGCCCAAAGCCCA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACGATATTGCTGCAGGTaGTTCTTAGCAGGATACACA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRYCCR*FLAGYT
Trigger: TGTGTATCCTGCTAAGAAGCACCTGCAGCAATATCG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGAAGGATGGGCTATTaGCTTCTCTCTCATCTTTGC +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRRMGY*LLSHLC
Trigger: GCAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp GTAGCAGCCTCTTCAGGGTTGAAGAAGGATGGGCTATaGCCTTCTCTCTCATCTTTGCCCATTACACCATGG +
Preference number: 4 (lower is better)
Translates to: VAASSGLKKDGL*PSLSSLPITPW
Trigger: CCATGGTGTAATGGGCAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS-3UTR CCA 90 bp TTGCTGATGTTCGACCCTGGCTTTATTCGCCTCTTTTCTGGTAACTGCACATCATCATTCCATACAGCATaGAGGAGAAGCCAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: LLMFDPGFIRLFSGNCTSSFHTA*RRSQGQ
Trigger: CTGCCCCTGGCTTCTCCTCCATGCTGTATGGAATGA...TGATGTGCAGTTACCAGAAAAGAGGCGAATAAAGCCAGGGTCGAACATCAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136148.3
CDS-3UTR CCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGTAACCCACAATGCTaGTCTTACAGTAGATGTGGA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSNPQC*SYSRCG
Trigger: TCCACATCTACTGTAAGACCAGCATTGTGGGTTACT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR GCA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACTTCTCTCTCATCTTTaGCCATTACACCATGGAAAA +
Preference number: 4 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRLLSHL*PLHHGK
Trigger: TTTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
3UTR CAA 72 bp TTGAAGAAGGATGGGCTATTGCCTTCTCTCTCATCTTaGCCCATTACACCATGGAAAATGATGGGGAAGCCC +
Preference number: 4 (lower is better)
Translates to: LKKDGLLPSLSS*PITPWKMMGKP
Trigger: GGGCTTCCCCATCATTTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106774.8
CDS CCA 90 bp CTCCCTCCCCTGGCAGCGAGCCAGGATCCGAACGTGGATATCGCCTaGGGCCCCCTAAACAGCCCGGAGGACCTTGGAGCCTCAGCTAGG +
Preference number: 5 (lower is better)
Translates to: LPPLAASQDPNVDIA*GPLNSPEDLGASAR
Trigger: CCTAGCTGAGGCTCCAAGGTCCTCCGGGCTGTTTAGGGGGCCCCAGGCGATATCCACGTTCGGATCCTGGCTCGCTGCCAGGGGAGGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000136148.3
ENSMUST00000166979.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGGTCAGCCCCTGAGTaGGATGGAGCACAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARSAPE*DGAQAR
Trigger: CCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATGCTGCAGGTCCAGTTaGGCAGGAAAGGGGCACCCG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLACCRSS*AGKGHP
Trigger: CGGGTGCCCCTTTCCTGCCAAACTGGACCTGCAGCA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAACAGCCCGGAGGACCTaGGAGCCTCAGCTAGGGCTA +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLATARRT*EPQLGL
Trigger: TAGCCCTAGCTGAGGCTCCAAGGTCCTCCGGGCTGT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCATTTCGGCAGCTGAACTaGCTAGGCATCGCGGCGGCG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAFRQLN*LGIAAA
Trigger: CGCCGCCGCGATGCCTAGCAAGTTCAGCTGCCGAAA...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106775.8
ENSMUST00000166979.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGCTGCCCTCCGGGATaGCCCGTTTCCTTGACATCC +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLASCPPG*PVSLTS
Trigger: GGATGTCAAGGAAACGGGCAATCCCGGAGGGCAGCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACGGGCTTTACCCTTCTaGGAGGAAGGGGCCAGGAGT +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARALPF*EEGARS
Trigger: ACTCCTGGCCCCTTCCTCCAAGAAGGGTAAAGCCCG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCCCAGCGGTCTAGTTaGAAGAACCTGACCCGAGTC +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAQRSS*KNLTRV
Trigger: GACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACAGGTGGATAAGGAGTaGCCCGTCTCGGGCTTCATG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAQVDKE*PVSGFM
Trigger: CATGAAGCCCGAGACGGGCAACTCCTTATCCACCTG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCTGCGTTCTTGGCCTaGGAACTCTTCCACAGAGCC +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAAFLA*ELFHRA
Trigger: GGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGACAGGGTCGTCCTGTaGGGTCTCAGAGGACAAAAG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLADRVVL*GLRGQK
Trigger: CTTTTGTCCTCTGAGACCCAACAGGACGACCCTGTC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACGAAGGGGCTGGCGGTaGAAGGTAAAGTTCACCTTG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARRGWR*KVKFTL
Trigger: CAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCAGTTGCTCAGGGTTaGACTCCAGACTCCGATCGT +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAVAQG*TPDSDR
Trigger: ACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAACTAATGTGACAGTCTaGCCGGTACCTGGAGGCCCA +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLATNVTV*PVPGGP
Trigger: TGGGCCTCCAGGTACCGGCAAGACTGTCACATTAGT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCCAGGATGTGGGCTTaGGGCAAATGCTTCACTACC +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAARMWA*GKCFTT
Trigger: GGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGGTCAGCCCCTGAGTaGGATGGAGCACAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRSAPE*DGAQAR
Trigger: CCTGGCCTGTGCTCCATCCAACTCAGGGGCTGACCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAACGATGAGCAAAGCCTaGGCTCGGGTCACAGCAACA +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLATMSKA*ARVTAT
Trigger: TGTTGCTGTGACCCGAGCCAAGGCTTTGCTCATCGT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATGCTGCAGGTCCAGTTaGGCAGGAAAGGGGCACCCG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRCCRSS*AGKGHP
Trigger: CGGGTGCCCCTTTCCTGCCAAACTGGACCTGCAGCA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGAGTTTGCTCAGACCTaGGAGCAAGTCCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAEFAQT*EQVLSL
Trigger: CAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACTC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGTAGAGGGGCTGAGTTaGCTCAGACCTTGGAGCAAG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAVEGLS*LRPWSK
Trigger: CTTGCTCCAAGGTCTGAGCAAACTCAGCCCCTCTAC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAACAGCCCGGAGGACCTaGGAGCCTCAGCTAGGGCTA +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRTARRT*EPQLGL
Trigger: TAGCCCTAGCTGAGGCTCCAAGGTCCTCCGGGCTGT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106774.8
ENSMUST00000106775.8
ENSMUST00000166979.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGATTTCGGCAGCTGAACTaGCTAGGCATCGCGGCGGCG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRFRQLN*LGIAAA
Trigger: CGCCGCCGCGATGCCTAGCAAGTTCAGCTGCCGAAA...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106775.8
ENSMUST00000166979.8
CDS-3UTR CAA 90 bp CGGTCTAGTTTGAAGAACCTGACCCGAGTCTTGGTGACGAAGGCCAGATTTGCGTTTCGGCAGCTGAACTaGCTAGGCATCGCGGCGGCG +
Preference number: 5 (lower is better)
Translates to: RSSLKNLTRVLVTKARFAFRQLN*LGIAAA
Trigger: CGCCGCCGCGATGCCTAGCAAGTTCAGCTGCCGAAA...CGCAAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTTCTTCAAACTAGACCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136148.3
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAACCTGACCCGAGTCTaGGTGACGAAGGCCAGATTT +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLANLTRV*VTKARF
Trigger: AAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAGGGTTAGTACCTCCTaGCGGTTCAAATCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLARVSTS*RFKSRW
Trigger: CCACCTGGATTTGAACCGCAAGGAGGTACTAACCCT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGTAGAAAAGCTCAGCTaGACACGGTCCAGTTCCACC +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAVEKLS*TRSSST
Trigger: GGTGGAACTGGACCGTGTCAAGCTGAGCTTTTCTAC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGCTGCCCTCCGGGATaGCCCGTTTCCTTGACATCC +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRSCPPG*PVSLTS
Trigger: GGATGTCAAGGAAACGGGCAATCCCGGAGGGCAGCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCAGCCTCTTCAGGGTaGAAGAAGGATGGGCTATTG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAAASSG*KKDGLL
Trigger: CAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACGGGCTTTACCCTTCTaGGAGGAAGGGGCCAGGAGT +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRALPF*EEGARS
Trigger: ACTCCTGGCCCCTTCCTCCAAGAAGGGTAAAGCCCG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp AGCCGTAGGGTTAGTACCTCCTTGCGGTTCAAATCCAGGTGGATAAGGAGTTGCACAGCCCGGAGGACCTaGGAGCCTCAGCTAGGGCTA +
Preference number: 5 (lower is better)
Translates to: SRRVSTSLRFKSRWIRSCTARRT*EPQLGL
Trigger: TAGCCCTAGCTGAGGCTCCAAGGTCCTCCGGGCTGT...GCAACTCCTTATCCACCTGGATTTGAACCGCAAGGAGGTACTAACCCTACGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCCCAGCGGTCTAGTTaGAAGAACCTGACCCGAGTC +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAQRSS*KNLTRV
Trigger: GACTCGGGTCAGGTTCTTCAAACTAGACCGCTGGGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCTGCGTTCTTGGCCTaGGAACTCTTCCACAGAGCC +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAAFLA*ELFHRA
Trigger: GGCTCTGTGGAAGAGTTCCAAGGCCAAGAACGCAGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp CTGGCTTTATTCGCCTCTTTTCTGGTAACTGCACATCAGCCCAGCGGTCTAGTTACAGCCCGGAGGACCTaGGAGCCTCAGCTAGGGCTA +
Preference number: 5 (lower is better)
Translates to: LALFASFLVTAHQPSGLVTARRT*EPQLGL
Trigger: TAGCCCTAGCTGAGGCTCCAAGGTCCTCCGGGCTGT...AACTAGACCGCTGGGCTGATGTGCAGTTACCAGAAAAGAGGCGAATAAAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106774.8
ENSMUST00000136148.3
CDS CCA 90 bp CCAGGAGTTCCCAGAGGACAGTGGCTGGGAAGTAACCCACAATGCTaGTCTTACAGTAGATGTGGAGTTCATAGCTTTCACCGGGGCCCA +
Preference number: 5 (lower is better)
Translates to: PGVPRGQWLGSNPQC*SYSRCGVHSFHRGP
Trigger: TGGGCCCCGGTGAAAGCTATGAACTCCACATCTACTGTAAGACCAGCATTGTGGGTTACTTCCCAGCCACTGTCCTCTGGGAACTCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGACAGGGTCGTCCTGTaGGGTCTCAGAGGACAAAAG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRDRVVL*GLRGQK
Trigger: CTTTTGTCCTCTGAGACCCAACAGGACGACCCTGTC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAAGGTAAAGTTCACCTaGAAGGTCAGCCCATCCACA +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAKVKFT*KVSPST
Trigger: TGTGGATGGGCTGACCTTCAAGGTGAACTTTACCTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACGAAGGGGCTGGCGGTaGAAGGTAAAGTTCACCTTG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRRGWR*KVKFTL
Trigger: CAAGGTGAACTTTACCTTCAACCGCCAGCCCCTTCG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCAGTTGCTCAGGGTTaGACTCCAGACTCCGATCGT +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAVAQG*TPDSDR
Trigger: ACGATCGGAGTCTGGAGTCAAACCCTGAGCAACTGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAACTAATGTGACAGTCTaGCCGGTACCTGGAGGCCCA +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRTNVTV*PVPGGP
Trigger: TGGGCCTCCAGGTACCGGCAAGACTGTCACATTAGT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCCAGGATGTGGGCTTaGGGCAAATGCTTCACTACC +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRARMWA*GKCFTT
Trigger: GGTAGTGAAGCATTTGCCCAAAGCCCACATCCTGGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAGCAACATTGAACCTCTaGGGGTTCTTAAGGAAACCG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAATLNL*GFLRKP
Trigger: CGGTTTCCTTAAGAACCCCAAGAGGTTCAATGTTGC...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAACGATGAGCAAAGCCTaGGCTCGGGTCACAGCAACA +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRTMSKA*ARVTAT
Trigger: TGTTGCTGTGACCCGAGCCAAGGCTTTGCTCATCGT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGAGTTTGCTCAGACCTaGGAGCAAGTCCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSREFAQT*EQVLSL
Trigger: CAGGGACAGGACTTGCTCCAAGGTCTGAGCAAACTC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGTAGAGGGGCTGAGTTaGCTCAGACCTTGGAGCAAG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRVEGLS*LRPWSK
Trigger: CTTGCTCCAAGGTCTGAGCAAACTCAGCCCCTCTAC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAACCTGACCCGAGTCTaGGTGACGAAGGCCAGATTT +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRNLTRV*VTKARF
Trigger: AAATCTGGCCTTCGTCACCAAGACTCGGGTCAGGTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAGGGTTAGTACCTCCTaGCGGTTCAAATCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRVSTS*RFKSRW
Trigger: CCACCTGGATTTGAACCGCAAGGAGGTACTAACCCT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGTAGAAAAGCTCAGCTaGACACGGTCCAGTTCCACC +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRVEKLS*TRSSST
Trigger: GGTGGAACTGGACCGTGTCAAGCTGAGCTTTTCTAC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCACCTTCTCTCTCATCTTaGCCCATTACACCATGGAAA +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAPSLSS*PITPWK
Trigger: TTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAGG...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp GGAAGGGGCGGAATGGTCTGGGCTGTAAACTTCCCGGCCTTCCCATCTCTTGCAAAGAAGGATGGGCTATaGCCTTCTCTCTCATCTTTG +
Preference number: 5 (lower is better)
Translates to: GRGGMVWAVNFPAFPSLAKKDGL*PSLSSL
Trigger: CAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCTT...TGCAAGAGATGGGAAGGCCGGGAAGTTTACAGCCCAGACCATTCCGCCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCAGCCTCTTCAGGGTaGAAGAAGGATGGGCTATTG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRAASSG*KKDGLL
Trigger: CAATAGCCCATCCTTCTTCAACCCTGAAGAGGCTGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACGGGTCACAGCAACATaGAACCTCTTGGGGTTCTTA +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRRVTAT*NLLGFL
Trigger: TAAGAACCCCAAGAGGTTCAATGTTGCTGTGACCCG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAGGTAAAGTTCACCTaGAAGGTCAGCCCATCCACA +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKVKFT*KVSPST
Trigger: TGTGGATGGGCTGACCTTCAAGGTGAACTTTACCTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAGCAACATTGAACCTCTaGGGGTTCTTAAGGAAACCG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRATLNL*GFLRKP
Trigger: CGGTTTCCTTAAGAACCCCAAGAGGTTCAATGTTGC...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGACCTTCTCTCTCATCTTaGCCCATTACACCATGGAAA +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRPSLSS*PITPWK
Trigger: TTTCCATGGTGTAATGGGCAAAGATGAGAGAGAAGG...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS-3UTR CAA 90 bp TCTTCCTCCCCCTTCCTCCGAGTTTTAGCAGCTTGGGTTGTCTTCCCTAGCAGAAAGAAGGATGGGCTATaGCCTTCTCTCTCATCTTTG +
Preference number: 5 (lower is better)
Translates to: SSSPFLRVLAAWVVFPSRKKDGL*PSLSSL
Trigger: CAAAGATGAGAGAGAAGGCAATAGCCCATCCTTCTT...TCTGCTAGGGAAGACAACCCAAGCTGCTAAAACTCGGAGGAAGGGGGAGGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002297.12
ENSMUST00000106775.8
ENSMUST00000166979.8
ENSMUST00000168015.8
CDS CAA 72 bp GGAAATGAAACTGAAAGTCGCCGCCGCGGTTTAGAGTaGGCTGGTCCCGAGCTCCCTCCCCTGGCAGCGAGC +
Preference number: 6 (lower is better)
Translates to: GNETESRRRGLE*AGPELPPLAAS
Trigger: GCTCGCTGCCAGGGGAGGGAGCTCGGGACCAGCCAACTCTAAACCGCGGCGGCGACTTTCAGTTTCATTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136148.3