Pregenerated sensors for MOSPD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023074Ensembl transcript IDs: ENSMUST00000023836.4, ENSMUST00000096447.9, ENSMUST00000152743.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAGAAACAGAAAAACCAATCTACTTCTGTGAGGTGCCTGTTGTTTaGACCACAGTCTGTTGTGTAGTTCACAAGCTCATTTCAATACAT | + |
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Preference number: 1 (lower is better) Translates to: LETEKPIYFCEVPVV*TTVCCVVHKLISIH Trigger: ATGTATTGAAATGAGCTTGTGAACTACACAACAGACTGTGGTTCAAACAACAGGCACCTCACAGAAGTAGATTGGTTTTTCTGTTTCTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGGGCAAGTCACTTACACTCAGGCAAGCAAGGGACCTGGGAGAAACCCAAAATCTACTTCTGTGAGGTaGCTGTTGTTTGAACCACAG | + |
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Preference number: 2 (lower is better) Translates to: PGQVTYTQASKGPGRNPKSTSVR*LLFEPQ Trigger: CTGTGGTTCAAACAACAGGCACCTCACAGAAGTAGA...TTTTGGGTTTCTCCCAGGTCCCTTGCTTGCCTGAGTGTAAGTGACTTGCCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| 3UTR-3UTR TCA 90 bp | CCAGGGCAAGTCACTTACACTCAGGCAAGCAAGGGACCTGGGAGAAACCCAAAAACATCTTGTCTTCTTTaGAGAGTCCAGGGTAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: PGQVTYTQASKGPGRNPKTSCLL*RVQGKH Trigger: ATGCTTACCCTGGACTCTTCAAAGAAGACAAGATGT...TTTTGGGTTTCTCCCAGGTCCCTTGCTTGCCTGAGTGTAAGTGACTTGCCCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| 3UTR-3UTR TCA 90 bp | AGCAAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGACATCTTGTCTTCTTTaGAGAGTCCAGGGTAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: SKGPGRNPKSDFLLNTSRTSCLL*RVQGKH Trigger: ATGCTTACCCTGGACTCTTCAAAGAAGACAAGATGT...CCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| 3UTR-3UTR TCA 90 bp | AAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGATTACCAATCTACTTCTGTaGGGTGCCTGTTGTTTGAAC | + |
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Preference number: 2 (lower is better) Translates to: KGPGRNPKSDFLLNTSRITNLLL*GACCLN Trigger: GTTCAAACAACAGGCACCTCACAGAAGTAGATTGGT...AATCCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| 3UTR-3UTR CAA 90 bp | CCAGGGCAAGTCACTTACACTCAGGCAAGCAAGGGACCTGGGAGAAACCCAAAAACTTACATAGTAATGTaGGTGCTTGCGTCTAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: PGQVTYTQASKGPGRNPKTYIVM*VLASRQ Trigger: TTGCCTAGACGCAAGCACCAACATTACTATGTAAGT...TTTTGGGTTTCTCCCAGGTCCCTTGCTTGCCTGAGTGTAAGTGACTTGCCCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| 3UTR TCA 72 bp | GAAAAACCAATCTACTTCTGTGAGGTGCCTGTTGTTTaGACCACAGTCTGTTGTGTAGTTCACAAGCTCATT | + |
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Preference number: 3 (lower is better) Translates to: EKPIYFCEVPVV*TTVCCVVHKLI Trigger: AATGAGCTTGTGAACTACACAACAGACTGTGGTTCAAACAACAGGCACCTCACAGAAGTAGATTGGTTTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| 3UTR-3UTR CAA 90 bp | AAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGATTACTTACATAGTAATGTaGGTGCTTGCGTCTAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: KGPGRNPKSDFLLNTSRITYIVM*VLASRQ Trigger: TTGCCTAGACGCAAGCACCAACATTACTATGTAAGT...AATCCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| 3UTR TCA 72 bp | TCAAGCTGGTCAGTTGTTCATTTAGGTCTAAAACTTTaGAGGACCCATGACCCTTATCAAAGTGAGTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: SSWSVVHLGLKL*RTHDPYQSEFK Trigger: TTTGAACTCACTTTGATAAGGGTCATGGGTCCTTCAAAGTTTTAGACCTAAATGAACAACTGACCAGCTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| 3UTR-3UTR CAA 90 bp | CATGTTTTCTTTATGAGTTCAGTGTGCCTTTCAATCATTACACAATGTACAGACACTTACATAGTAATGTaGGTGCTTGCGTCTAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: HVFFMSSVCLSIITQCTDTYIVM*VLASRQ Trigger: TTGCCTAGACGCAAGCACCAACATTACTATGTAAGT...GTCTGTACATTGTGTAATGATTGAAAGGCACACTGAACTCATAAAGAAAACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | CCAGGGCAAGTCACTTACACTCAGGCAAGCAAGGGACCTGGGAGAAACCCAAAATTGTTCTTTAGCAGATaGGAGAAGGGTGGCAATAAC | + |
|
Preference number: 4 (lower is better) Translates to: PGQVTYTQASKGPGRNPKLFFSR*EKGGNN Trigger: GTTATTGCCACCCTTCTCCCATCTGCTAAAGAACAA...TTTTGGGTTTCTCCCAGGTCCCTTGCTTGCCTGAGTGTAAGTGACTTGCCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR TCA 90 bp | CCAGGGCAAGTCACTTACACTCAGGCAAGCAAGGGACCTGGGAGAAACCCAAAAGATCGAACATCTCTATaGCGAATCACAATATCCACA | + |
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Preference number: 4 (lower is better) Translates to: PGQVTYTQASKGPGRNPKDRTSL*RITIST Trigger: TGTGGATATTGTGATTCGTCATAGAGATGTTCGATC...TTTTGGGTTTCTCCCAGGTCCCTTGCTTGCCTGAGTGTAAGTGACTTGCCCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR GCA 90 bp | GTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCTTGCGTCTAGGGCACTGTGGCTTCACTaGACCGGCAGCATCAACGAC | + |
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Preference number: 4 (lower is better) Translates to: VMMRKSMTYIVMLVLASRALWLH*TGSIND Trigger: GTCGTTGATGCTGCCGGTGCAGTGAAGCCACAGTGC...CCTAGACGCAAGCACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR GCA 90 bp | CAGCAGCTCCTTGTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGGCACTGTGGCTTCACTaGACCGGCAGCATCAACGAC | + |
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Preference number: 4 (lower is better) Translates to: QQLLVMMRKSMTYIVMLVALWLH*TGSIND Trigger: GTCGTTGATGCTGCCGGTGCAGTGAAGCCACAGTGC...CACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTACAAGGAGCTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | GTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCTTGCGTCTAGGATCCACACAGCACTGTaGCTTCACTGCACCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VMMRKSMTYIVMLVLASRIHTAL*LHCTGS Trigger: GCTGCCGGTGCAGTGAAGCCACAGTGCTGTGTGGAT...CCTAGACGCAAGCACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR GCA 90 bp | CATGTTTTCTTTATGAGTTCAGTGTGCCTTTCAATCATTACACAATGTACAGACGCACTGTGGCTTCACTaGACCGGCAGCATCAACGAC | + |
|
Preference number: 4 (lower is better) Translates to: HVFFMSSVCLSIITQCTDALWLH*TGSIND Trigger: GTCGTTGATGCTGCCGGTGCAGTGAAGCCACAGTGC...GTCTGTACATTGTGTAATGATTGAAAGGCACACTGAACTCATAAAGAAAACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | CATGTTTTCTTTATGAGTTCAGTGTGCCTTTCAATCATTACACAATGTACAGACATCCACACAGCACTGTaGCTTCACTGCACCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: HVFFMSSVCLSIITQCTDIHTAL*LHCTGS Trigger: GCTGCCGGTGCAGTGAAGCCACAGTGCTGTGTGGAT...GTCTGTACATTGTGTAATGATTGAAAGGCACACTGAACTCATAAAGAAAACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGCTCCTTGTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCCCAAGGCCTTCCTCTaGCTTTGTTCAGAAACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QQLLVMMRKSMTYIVMLVPKAFL*LCSETW Trigger: CCAGGTTTCTGAACAAAGCCAGAGGAAGGCCTTGGG...CACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTACAAGGAGCTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | AGGTGTCACTCAGAAGTATCTTTGTTGTCTGTAACATTAAGTGATACAGTCCTTCCCAAGGCCTTCCTCTaGCTTTGTTCAGAAACCTGG | + |
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Preference number: 4 (lower is better) Translates to: RCHSEVSLLSVTLSDTVLPKAFL*LCSETW Trigger: CCAGGTTTCTGAACAAAGCCAGAGGAAGGCCTTGGG...AAGGACTGTATCACTTAATGTTACAGACAACAAAGATACTTCTGAGTGACACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR TCA 90 bp | AGCAAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGTTTACCTGGTTGACATaGCTGCTCAAAGAACACACT | + |
|
Preference number: 4 (lower is better) Translates to: SKGPGRNPKSDFLLNTSRFTWLT*LLKEHT Trigger: AGTGTGTTCTTTGAGCAGTCATGTCAACCAGGTAAA...CCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023836.4 |
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| CDS-3UTR TCA 90 bp | GTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCTTGCGTCTAGGGCAGCCACTAGTTTTTaGTTCACACTTAAGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: VMMRKSMTYIVMLVLASRAATSF*FTLKWR Trigger: CCTCCACTTAAGTGTGAATCAAAAACTAGTGGCTGC...CCTAGACGCAAGCACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR TCA 90 bp | CAGCAGCTCCTTGTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGGCTCTGTTTTCTGGTTaGCATGACTGCTCAAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: QQLLVMMRKSMTYIVMLVALFSG*HDCSKN Trigger: GTTCTTTGAGCAGTCATGTCAACCAGAAAACAGAGC...CACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTACAAGGAGCTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR TCA 90 bp | GTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCTTGCGTCTAGGGCTCTGTTTTCTGGTTaGCATGACTGCTCAAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: VMMRKSMTYIVMLVLASRALFSG*HDCSKN Trigger: GTTCTTTGAGCAGTCATGTCAACCAGAAAACAGAGC...CCTAGACGCAAGCACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | AGCAAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGAAAATATTAGCTCCGTaGGAAACACAAAGACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: SKGPGRNPKSDFLLNTSRKILAP*ETQRQE Trigger: TTCCTGTCTTTGTGTTTCCCACGGAGCTAATATTTT...CCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR CCA 90 bp | AAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGATTCTTTGTTCAGAAACCTaGAGGCGGAATTTGTCTATC | + |
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Preference number: 4 (lower is better) Translates to: KGPGRNPKSDFLLNTSRILCSET*RRNLSI Trigger: GATAGACAAATTCCGCCTCCAGGTTTCTGAACAAAG...AATCCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR CCA 90 bp | AAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGATTTTGTTCTTTAGCAGATaGGAGAAGGGTGGCAATAAC | + |
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Preference number: 4 (lower is better) Translates to: KGPGRNPKSDFLLNTSRILFFSR*EKGGNN Trigger: GTTATTGCCACCCTTCTCCCATCTGCTAAAGAACAA...AATCCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR TCA 90 bp | GTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCTTGCGTCTAGGGATCGAACATCTCTATaGCGAATCACAATATCCACA | + |
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Preference number: 4 (lower is better) Translates to: VMMRKSMTYIVMLVLASRDRTSL*RITIST Trigger: TGTGGATATTGTGATTCGTCATAGAGATGTTCGATC...CCTAGACGCAAGCACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR TCA 90 bp | AGGTGTCACTCAGAAGTATCTTTGTTGTCTGTAACATTAAGTGATACAGTCCTTGTTTTCTGGTTGACATaGCTGCTCAAAGAACACACT | + |
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Preference number: 4 (lower is better) Translates to: RCHSEVSLLSVTLSDTVLVFWLT*LLKEHT Trigger: AGTGTGTTCTTTGAGCAGTCATGTCAACCAGAAAAC...AAGGACTGTATCACTTAATGTTACAGACAACAAAGATACTTCTGAGTGACACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR TCA 90 bp | AGGTGTCACTCAGAAGTATCTTTGTTGTCTGTAACATTAAGTGATACAGTCCTTGATCGAACATCTCTATaGCGAATCACAATATCCACA | + |
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Preference number: 4 (lower is better) Translates to: RCHSEVSLLSVTLSDTVLDRTSL*RITIST Trigger: TGTGGATATTGTGATTCGTCATAGAGATGTTCGATC...AAGGACTGTATCACTTAATGTTACAGACAACAAAGATACTTCTGAGTGACACCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | GTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCTTGCGTCTAGGAAAATATTAGCTCCGTaGGAAACACAAAGACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: VMMRKSMTYIVMLVLASRKILAP*ETQRQE Trigger: TTCCTGTCTTTGTGTTTCCCACGGAGCTAATATTTT...CCTAGACGCAAGCACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CCA 90 bp | CATGTTTTCTTTATGAGTTCAGTGTGCCTTTCAATCATTACACAATGTACAGACTTGTTCTTTAGCAGATaGGAGAAGGGTGGCAATAAC | + |
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Preference number: 4 (lower is better) Translates to: HVFFMSSVCLSIITQCTDLFFSR*EKGGNN Trigger: GTTATTGCCACCCTTCTCCCATCTGCTAAAGAACAA...GTCTGTACATTGTGTAATGATTGAAAGGCACACTGAACTCATAAAGAAAACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152743.8 |
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| CDS-3UTR CAA 90 bp | CCAGGGCAAGTCACTTACACTCAGGCAAGCAAGGGACCTGGGAGAAACCCAAAACTCCTCTTCCTTCTGTaGTTCTTTAGCAGATGGGAG | + |
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Preference number: 5 (lower is better) Translates to: PGQVTYTQASKGPGRNPKLLFLL*FFSRWE Trigger: CTCCCATCTGCTAAAGAACAACAGAAGGAAGAGGAG...TTTTGGGTTTCTCCCAGGTCCCTTGCTTGCCTGAGTGTAAGTGACTTGCCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR CAA 90 bp | AAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGATTGGCCTTCCTCTGGCTTaGTTCAGAAACCTGGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: KGPGRNPKSDFLLNTSRIGLPLA*FRNLEA Trigger: CGCCTCCAGGTTTCTGAACAAAGCCAGAGGAAGGCC...AATCCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS GCA 90 bp | ATCTCTATGACGAATCACAATATCCACACAGCACTGTGGCTTCACTaGACCGGCAGCATCAACGACAACATACTTATTTGGAGTCGTACA | + |
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Preference number: 5 (lower is better) Translates to: ISMTNHNIHTALWLH*TGSINDNILIWSRT Trigger: TGTACGACTCCAAATAAGTATGTTGTCGTTGATGCTGCCGGTGCAGTGAAGCCACAGTGCTGTGTGGATATTGTGATTCGTCATAGAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CAA 90 bp | AGGTGTCACTCAGAAGTATCTTTGTTGTCTGTAACATTAAGTGATACAGTCCTTCTCCTCTTCCTTCTGTaGTTCTTTAGCAGATGGGAG | + |
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Preference number: 5 (lower is better) Translates to: RCHSEVSLLSVTLSDTVLLLFLL*FFSRWE Trigger: CTCCCATCTGCTAAAGAACAACAGAAGGAAGAGGAG...AAGGACTGTATCACTTAATGTTACAGACAACAAAGATACTTCTGAGTGACACCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS CCA 90 bp | CTTGTTTATGTGTTGACTGATCATCTGCATAAAATATTAGCTCCGTaGGAAACACAAAGACAGGAAGATTCCCTTCCACTAACTCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LVYVLTDHLHKILAP*ETQRQEDSLPLTLV Trigger: AACCAGAGTTAGTGGAAGGGAATCTTCCTGTCTTTGTGTTTCCCACGGAGCTAATATTTTATGCAGATGATCAGTCAACACATAAACAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CAA 90 bp | AGCAAGGGACCTGGGAGAAACCCAAAAAGTGATTTTCTCCTTAATACATCAAGGGTCGTACACAAAACTTaGAACTTTAAGGCAAACTCA | + |
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Preference number: 5 (lower is better) Translates to: SKGPGRNPKSDFLLNTSRVVHKT*NFKANS Trigger: TGAGTTTGCCTTAAAGTTCAAAGTTTTGTGTACGAC...CCTTGATGTATTAAGGAGAAAATCACTTTTTGGGTTTCTCCCAGGTCCCTTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 |
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| CDS-3UTR CAA 90 bp | CAGCAGCTCCTTGTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGGTCGTACACAAAACTTaGAACTTTAAGGCAAACTCA | + |
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Preference number: 5 (lower is better) Translates to: QQLLVMMRKSMTYIVMLVVVHKT*NFKANS Trigger: TGAGTTTGCCTTAAAGTTCAAAGTTTTGTGTACGAC...CACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTACAAGGAGCTGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGCTCCTTGTAATGATGAGGAAATCTATGACTTACATAGTAATGTTGGTGCGACAACATACTTATTaGGAGTCGTACACAAAACTT | + |
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Preference number: 5 (lower is better) Translates to: QQLLVMMRKSMTYIVMLVRQHTY*ESYTKL Trigger: AAGTTTTGTGTACGACTCCAAATAAGTATGTTGTCG...CACCAACATTACTATGTAAGTCATAGATTTCCTCATCATTACAAGGAGCTGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS-3UTR CAA 90 bp | AGGTGTCACTCAGAAGTATCTTTGTTGTCTGTAACATTAAGTGATACAGTCCTTGTCGTACACAAAACTTaGAACTTTAAGGCAAACTCA | + |
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Preference number: 5 (lower is better) Translates to: RCHSEVSLLSVTLSDTVLVVHKT*NFKANS Trigger: TGAGTTTGCCTTAAAGTTCAAAGTTTTGTGTACGAC...AAGGACTGTATCACTTAATGTTACAGACAACAAAGATACTTCTGAGTGACACCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS GCA 72 bp | ACGAATCACAATATCCACACAGCACTGTGGCTTCACTaGACCGGCAGCATCAACGACAACATACTTATTTGG | + |
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Preference number: 6 (lower is better) Translates to: TNHNIHTALWLH*TGSINDNILIW Trigger: CCAAATAAGTATGTTGTCGTTGATGCTGCCGGTGCAGTGAAGCCACAGTGCTGTGTGGATATTGTGATTCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS CCA 72 bp | ATCTCTATGACGAATCACAATATCCACACAGCACTGTaGCTTCACTGCACCGGCAGCATCAACGACAACATA | + |
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Preference number: 6 (lower is better) Translates to: ISMTNHNIHTAL*LHCTGSINDNI Trigger: TATGTTGTCGTTGATGCTGCCGGTGCAGTGAAGCCACAGTGCTGTGTGGATATTGTGATTCGTCATAGAGAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS TCA 72 bp | AAACTAGGTCCTGAAGAGACGGCTCTGTTTTCTGGTTaGCATGACTGCTCAAAGAACACACTCTCGGTTAAG | + |
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Preference number: 6 (lower is better) Translates to: KLGPEETALFSG*HDCSKNTLSVK Trigger: CTTAACCGAGAGTGTGTTCTTTGAGCAGTCATGTCAACCAGAAAACAGAGCCGTCTCTTCAGGACCTAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS CCA 72 bp | GTGTTGACTGATCATCTGCATAAAATATTAGCTCCGTaGGAAACACAAAGACAGGAAGATTCCCTTCCACTA | + |
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Preference number: 6 (lower is better) Translates to: VLTDHLHKILAP*ETQRQEDSLPL Trigger: TAGTGGAAGGGAATCTTCCTGTCTTTGTGTTTCCCACGGAGCTAATATTTTATGCAGATGATCAGTCAACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS CAA 90 bp | AGGCAAACTCATAGGGATTGTACAGAGTCAACACTTGTTTATGTGTaGACTGATCATCTGCATAAAATATTAGCTCCGTGGGAAACACAA | + |
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Preference number: 6 (lower is better) Translates to: RQTHRDCTESTLVYV*TDHLHKILAPWETQ Trigger: TTGTGTTTCCCACGGAGCTAATATTTTATGCAGATGATCAGTCAACACATAAACAAGTGTTGACTCTGTACAATCCCTATGAGTTTGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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| CDS CAA 72 bp | CATAGGGATTGTACAGAGTCAACACTTGTTTATGTGTaGACTGATCATCTGCATAAAATATTAGCTCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: HRDCTESTLVYV*TDHLHKILAPW Trigger: CCACGGAGCTAATATTTTATGCAGATGATCAGTCAACACATAAACAAGTGTTGACTCTGTACAATCCCTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023836.4 ENSMUST00000096447.9 ENSMUST00000152743.8 |
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