RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MORN4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049670

Ensembl transcript IDs: ENSMUST00000051772.10

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACAGAGGCCAGTCTGGAGCCAGGCCTCCAATTGCAGTGAATGAGTaGGTAACCCCCAGAAGAGCTCTGGCCTGGACTTCACAGAGCTGC +
Preference number: 1 (lower is better)
Translates to: HRGQSGARPPIAVNE*VTPRRALAWTSQSC
Trigger: GCAGCTCTGTGAAGTCCAGGCCAGAGCTCTTCTGGGGGTTACCCACTCATTCACTGCAATTGGAGGCCTGGCTCCAGACTGGCCTCTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR CCA 90 bp GTCTGTGAACACCCAGGGGACAGTGAGCCTGATCCAATGGTACGCTaGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATTCCAGGCCA +
Preference number: 1 (lower is better)
Translates to: VCEHPGDSEPDPMVR*EGALSAGLSWDSRP
Trigger: TGGCCTGGAATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGGCTCACTGTCCCCTGGGTGTTCACAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR CCA 90 bp GGACCCAAGTCTGTGAACACCCAGGGGACAGTGAGCCTGATCCAATaGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATT +
Preference number: 1 (lower is better)
Translates to: GPKSVNTQGTVSLIQ*YAGKELSVQAFPGI
Trigger: AATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGGCTCACTGTCCCCTGGGTGTTCACAGACTTGGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR TCA 90 bp AAGACACAGAGGCCAGTCTGGAGCCAGGCCTCCAATTGCAGTGAATaGGTGGGTAACCCCCAGAAGAGCTCTGGCCTGGACTTCACAGAG +
Preference number: 1 (lower is better)
Translates to: KTQRPVWSQASNCSE*VGNPQKSSGLDFTE
Trigger: CTCTGTGAAGTCCAGGCCAGAGCTCTTCTGGGGGTTACCCACTCATTCACTGCAATTGGAGGCCTGGCTCCAGACTGGCCTCTGTGTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR TCA 90 bp GCCATTCCACAGAAAGCCTGGATAGGTCTGCCCTTCACCCTGGAGTaGGTCAGGAGTGCAGGTCATAAGTTACTTTTACACTGGTTTCTT +
Preference number: 1 (lower is better)
Translates to: AIPQKAWIGLPFTLE*VRSAGHKLLLHWFL
Trigger: AAGAAACCAGTGTAAAAGTAACTTATGACCTGCACTCCTGACTCACTCCAGGGTGAAGGGCAGACCTATCCAGGCTTTCTGTGGAATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR GCA 90 bp GGCATCAAGGTCATTCTCATCTCATATCCGTTTCATTTGTTCACCTaGACGCATACAAGGGAAGCCACTGCTCTACGGATCCTTTCCAGC +
Preference number: 1 (lower is better)
Translates to: GIKVILISYPFHLFT*THTREATALRILSS
Trigger: GCTGGAAAGGATCCGTAGAGCAGTGGCTTCCCTTGTATGCGTGCAGGTGAACAAATGAAACGGATATGAGATGAGAATGACCTTGATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR CCA 90 bp CCAGGGGACAGTGAGCCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAACTGCCGCAGGGCCTTaGGGCCAAACCCCTCCACAC +
Preference number: 2 (lower is better)
Translates to: PGDSEPDPMVRWEGALSATAAGP*GQTPPH
Trigger: GTGTGGAGGGGTTTGGCCCCAAGGCCCTGCGGCAGT...TGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGGCTCACTGTCCCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR CCA 90 bp GAGCCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGACACAGAGGCCAGTCTaGAGCCAGGCCTCCAATTGC +
Preference number: 2 (lower is better)
Translates to: EPDPMVRWEGALSAGLSWTQRPV*SQASNC
Trigger: GCAATTGGAGGCCTGGCTCCAGACTGGCCTCTGTGT...CCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR GCA 90 bp CTGGTCGGCAGGGGACGGAGCACCTCCCAGGCTGTGGCATCAAGGTCATTCTCATTTCATTTGTTCACCTaGACGCATACAAGGGAAGCC +
Preference number: 2 (lower is better)
Translates to: LVGRGRSTSQAVASRSFSFHLFT*THTREA
Trigger: GGCTTCCCTTGTATGCGTGCAGGTGAACAAATGAAA...TGAGAATGACCTTGATGCCACAGCCTGGGAGGTGCTCCGTCCCCTGCCGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR CCA 90 bp CTGGGATTCCAGGCCATTCCACAGAAAGCCTGGATAGGTCTGCCCTTCACCCTGAGAAGAGCTCTGGCCTaGACTTCACAGAGCTGCTGT +
Preference number: 2 (lower is better)
Translates to: LGFQAIPQKAWIGLPFTLRRALA*TSQSCC
Trigger: ACAGCAGCTCTGTGAAGTCCAGGCCAGAGCTCTTCT...CAGGGTGAAGGGCAGACCTATCCAGGCTTTCTGTGGAATGGCCTGGAATCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR CAA 90 bp TCTGCGGTAAGTAAGGGTGGGCAGAATGAAGAGAGTCTGTATGGTTaGACAGCAGGCGGAGAGAAGGCCACAGCACTGGGTAACCCAAGG +
Preference number: 2 (lower is better)
Translates to: SAVSKGGQNEESLYG*TAGGEKATALGNPR
Trigger: CCTTGGGTTACCCAGTGCTGTGGCCTTCTCTCCGCCTGCTGTCAAACCATACAGACTCTCTTCATTCTGCCCACCCTTACTTACCGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR TCA 90 bp CCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATTCCAATTGCAGTGAATaGGTGGGTAACCCCCAGAAG +
Preference number: 2 (lower is better)
Translates to: PDPMVRWEGALSAGLSWDSNCSE*VGNPQK
Trigger: CTTCTGGGGGTTACCCACTCATTCACTGCAATTGGA...ATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR GCA 90 bp CTGGGATTCCAGGCCATTCCACAGAAAGCCTGGATAGGTCTGCCCTTCACCCTGTACAAGGGAAGCCACTaGTCTACGGATCCTTTCCAG +
Preference number: 2 (lower is better)
Translates to: LGFQAIPQKAWIGLPFTLYKGSH*STDPFQ
Trigger: CTGGAAAGGATCCGTAGAGCAGTGGCTTCCCTTGTA...CAGGGTGAAGGGCAGACCTATCCAGGCTTTCTGTGGAATGGCCTGGAATCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR CCA 90 bp GCTGAGGGAGAAGAAAACCACACTCTTACACCGAGGAGGGATAAGAAGACACAGAGAAGGCCACAGCACTaGGTAACCCAAGGTCTTGGG +
Preference number: 2 (lower is better)
Translates to: AEGEENHTLTPRRDKKTQRRPQH*VTQGLG
Trigger: CCCAAGACCTTGGGTTACCCAGTGCTGTGGCCTTCT...CTGTGTCTTCTTATCCCTCCTCGGTGTAAGAGTGTGGTTTTCTTCTCCCTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR CAA 90 bp CCAGGCTGTGGCATCAAGGTCATTCTCATCTCATATCCGTTTCATTaGTTCACCTGCACGCATACAAGGGAAGCCACTGCTCTACGGATC +
Preference number: 2 (lower is better)
Translates to: PGCGIKVILISYPFH*FTCTHTREATALRI
Trigger: GATCCGTAGAGCAGTGGCTTCCCTTGTATGCGTGCAGGTGAACAAATGAAACGGATATGAGATGAGAATGACCTTGATGCCACAGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR CCA 90 bp CCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATCACTGGTTTCTTACTTaGCTATTCTATAAAGGGATC +
Preference number: 2 (lower is better)
Translates to: PDPMVRWEGALSAGLSWDHWFLT*LFYKGI
Trigger: GATCCCTTTATAGAATAGCCAAGTAAGAAACCAGTG...ATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR-3UTR CAA 90 bp CCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATGAGAGTCTGTATGGTTaGACAGCAGGCGGAGAGAAG +
Preference number: 3 (lower is better)
Translates to: PDPMVRWEGALSAGLSWDESLYG*TAGGEK
Trigger: CTTCTCTCCGCCTGCTGTCAAACCATACAGACTCTC...ATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CCA 90 bp CTGGTCGGCAGGGGACGGAGCACCTCCCAGGCTGTGGCATCAAGGTCATTCTCAGGTTCCTGGCTGACTTaGAGGCGCTCTGAGCCCGCT +
Preference number: 4 (lower is better)
Translates to: LVGRGRSTSQAVASRSFSGSWLT*RRSEPA
Trigger: AGCGGGCTCAGAGCGCCTCCAAGTCAGCCAGGAACC...TGAGAATGACCTTGATGCCACAGCCTGGGAGGTGCTCCGTCCCCTGCCGACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR TCA 90 bp TACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATTCCAGGCCATTCCAGTGAGGTTCCTGGCTaGCTTGGAGGCGCTCTGAGC +
Preference number: 4 (lower is better)
Translates to: YAGKELSVQAFPGIPGHSSEVPG*LGGALS
Trigger: GCTCAGAGCGCCTCCAAGTCAGCCAGGAACCTCACT...GGAATGGCCTGGAATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR TCA 90 bp CAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATTCCAGGCAGACTCCGACGCCATTaGACTTGCCCTGGGAAAACT +
Preference number: 4 (lower is better)
Translates to: QWYAGKELSVQAFPGIPGRLRRH*TCPGKT
Trigger: AGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCT...GCCTGGAATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR TCA 90 bp CCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATTTGCGGGGTATTCCATaGGAACCATCTGGGAAAGTC +
Preference number: 4 (lower is better)
Translates to: PDPMVRWEGALSAGLSWDLRGIP*EPSGKV
Trigger: GACTTTCCCAGATGGTTCTCATGGAATACCCCGCAA...ATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR CAA 72 bp AGTAAGGGTGGGCAGAATGAAGAGAGTCTGTATGGTTaGACAGCAGGCGGAGAGAAGGCCACAGCACTGGGT +
Preference number: 4 (lower is better)
Translates to: SKGGQNEESLYG*TAGGEKATALG
Trigger: ACCCAGTGCTGTGGCCTTCTCTCCGCCTGCTGTCAAACCATACAGACTCTCTTCATTCTGCCCACCCTTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CCA 90 bp GGATGGACCCAAGTCTGTGAACACCCAGGGGACAGTGAGCCTGATCCAATGGTATCCATGAGAACCATCTaGGAAAGTCAGCAGGCCAAA +
Preference number: 4 (lower is better)
Translates to: GWTQVCEHPGDSEPDPMVSMRTI*ESQQAK
Trigger: TTTGGCCTGCTGACTTTCCCAGATGGTTCTCATGGA...TACCATTGGATCAGGCTCACTGTCCCCTGGGTGTTCACAGACTTGGGTCCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR GCA 90 bp GCTGAGGGAGAAGAAAACCACACTCTTACACCGAGGAGGGATAAGAAGACACAGGTAGGTGCCACCGTCTaGAAACACCAATTGACCAAA +
Preference number: 4 (lower is better)
Translates to: AEGEENHTLTPRRDKKTQVGATV*KHQLTK
Trigger: TTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTAC...CTGTGTCTTCTTATCCCTCCTCGGTGTAAGAGTGTGGTTTTCTTCTCCCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR GCA 90 bp CCTTCACCCTGGAGTGAGTCAGGAGTGCAGGTCATAAGTTACTTTTACACTGGTCGAACAGACCTTCGTTaGGGGGTATTCCATGAGAAC +
Preference number: 4 (lower is better)
Translates to: PSPWSESGVQVISYFYTGRTDLR*GVFHEN
Trigger: GTTCTCATGGAATACCCCGCAACGAAGGTCTGTTCG...ACCAGTGTAAAAGTAACTTATGACCTGCACTCCTGACTCACTCCAGGGTGAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
3UTR CAA 72 bp GGCATCAAGGTCATTCTCATCTCATATCCGTTTCATTaGTTCACCTGCACGCATACAAGGGAAGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: GIKVILISYPFH*FTCTHTREATA
Trigger: AGCAGTGGCTTCCCTTGTATGCGTGCAGGTGAACAAATGAAACGGATATGAGATGAGAATGACCTTGATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR GCA 90 bp TACTTTTACACTGGTTTCTTACTTGGCTATTCTATAAAGGGATCCTGTCTGATGAGTGACCCAGGTAGGTaGCACCGTCTGCAAACACCA +
Preference number: 4 (lower is better)
Translates to: YFYTGFLLGYSIKGSCLMSDPGR*HRLQTP
Trigger: TGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACT...CATCAGACAGGATCCCTTTATAGAATAGCCAAGTAAGAAACCAGTGTAAAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CCA 90 bp TACTTTTACACTGGTTTCTTACTTGGCTATTCTATAAAGGGATCCTGTCTGATGCCATTGAACTTGCCCTaGGAAAACTCCCCCTCATAC +
Preference number: 4 (lower is better)
Translates to: YFYTGFLLGYSIKGSCLMPLNLP*ENSPSY
Trigger: GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGG...CATCAGACAGGATCCCTTTATAGAATAGCCAAGTAAGAAACCAGTGTAAAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CAA 90 bp CAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGATTCCAGGCACTCCCCCTCATACCTaGAGCCATCTGAGAAGGTCA +
Preference number: 5 (lower is better)
Translates to: QWYAGKELSVQAFPGIPGTPPHT*SHLRRS
Trigger: TGACCTTCTCAGATGGCTCAAGGTATGAGGGGGAGT...GCCTGGAATCCCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CAA 90 bp GAGCCTGATCCAATGGTACGCTGGGAAGGAGCTCTCAGTGCAGGCCTTTCCTGGGTCTGCAAACACCAATaGACCAAAGCCATGTCTCCG +
Preference number: 5 (lower is better)
Translates to: EPDPMVRWEGALSAGLSWVCKHQ*TKAMSP
Trigger: CGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGAC...CCAGGAAAGGCCTGCACTGAGAGCTCCTTCCCAGCGTACCATTGGATCAGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CAA 90 bp CTGGGATTCCAGGCCATTCCACAGAAAGCCTGGATAGGTCTGCCCTTCACCCTGAAGACTCCGACGCCATaGAACTTGCCCTGGGAAAAC +
Preference number: 5 (lower is better)
Translates to: LGFQAIPQKAWIGLPFTLKTPTP*NLPWEN
Trigger: GTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTT...CAGGGTGAAGGGCAGACCTATCCAGGCTTTCTGTGGAATGGCCTGGAATCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CAA 90 bp CCTTCACCCTGGAGTGAGTCAGGAGTGCAGGTCATAAGTTACTTTTACACTGGTCCGACGCCATTGAACTaGCCCTGGGAAAACTCCCCC +
Preference number: 5 (lower is better)
Translates to: PSPWSESGVQVISYFYTGPTPLN*PWENSP
Trigger: GGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGG...ACCAGTGTAAAAGTAACTTATGACCTGCACTCCTGACTCACTCCAGGGTGAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS GCA 90 bp ACTTCTCACGCCGCAGTAGCTTGTTGTTCTCGAACAGACCTTCGTTaGGGGGTATTCCATGAGAACCATCTGGGAAAGTCAGCAGGCCAA +
Preference number: 5 (lower is better)
Translates to: TSHAAVACCSRTDLR*GVFHENHLGKSAGQ
Trigger: TTGGCCTGCTGACTTTCCCAGATGGTTCTCATGGAATACCCCGCAACGAAGGTCTGTTCGAGAACAACAAGCTACTGCGGCGTGAGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS GCA 90 bp ATTAAAAAGCCCATTCTCGAAGTGACCCAGGTAGGTGCCACCGTCTaGAAACACCAATTGACCAAAGCCATGTCTCCGGCCCTCTTTCCA +
Preference number: 5 (lower is better)
Translates to: IKKPILEVTQVGATV*KHQLTKAMSPALFP
Trigger: TGGAAAGAGGGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS TCA 90 bp AGTAGCTTGTTGTTCTCGAACAGACCTTCGTTGCGGGGTATTCCATaGGAACCATCTGGGAAAGTCAGCAGGCCAAAACCGTCTACTCTG +
Preference number: 5 (lower is better)
Translates to: SSLLFSNRPSLRGIP*EPSGKVSRPKPSTL
Trigger: CAGAGTAGACGGTTTTGGCCTGCTGACTTTCCCAGATGGTTCTCATGGAATACCCCGCAACGAAGGTCTGTTCGAGAACAACAAGCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CCA 90 bp ATGTTGTCATATCGAATGAAGACTCCGACGCCATTGAACTTGCCCTaGGAAAACTCCCCCTCATACCTTGAGCCATCTGAGAAGGTCAGG +
Preference number: 5 (lower is better)
Translates to: MLSYRMKTPTPLNLP*ENSPSYLEPSEKVR
Trigger: CCTGACCTTCTCAGATGGCTCAAGGTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS-3UTR CAA 90 bp AAGTCTGTGAACACCCAGGGGACAGTGAGCCTGATCCAATGGTACGCTGGGAAGCCCTCAAAGGTCATGTaGTCATATCGAATGAAGACT +
Preference number: 5 (lower is better)
Translates to: KSVNTQGTVSLIQWYAGKPSKVM*SYRMKT
Trigger: AGTCTTCATTCGATATGACAACATGACCTTTGAGGG...CTTCCCAGCGTACCATTGGATCAGGCTCACTGTCCCCTGGGTGTTCACAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 90 bp ATTCTCGAAGTGACCCAGGTAGGTGCCACCGTCTGCAAACACCAATaGACCAAAGCCATGTCTCCGGCCCTCTTTCCACTCGCCGCGGTA +
Preference number: 6 (lower is better)
Translates to: ILEVTQVGATVCKHQ*TKAMSPALFPLAAV
Trigger: TACCGCGGCGAGTGGAAAGAGGGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS GCA 72 bp CCCATTCTCGAAGTGACCCAGGTAGGTGCCACCGTCTaGAAACACCAATTGACCAAAGCCATGTCTCCGGCC +
Preference number: 6 (lower is better)
Translates to: PILEVTQVGATV*KHQLTKAMSPA
Trigger: GGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 72 bp GTGACCCAGGTAGGTGCCACCGTCTGCAAACACCAATaGACCAAAGCCATGTCTCCGGCCCTCTTTCCACTC +
Preference number: 6 (lower is better)
Translates to: VTQVGATVCKHQ*TKAMSPALFPL
Trigger: GAGTGGAAAGAGGGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 72 bp ACCACGGCGGAACACTTCTCACGCCGCAGTAGCTTGTaGTTCTCGAACAGACCTTCGTTGCGGGGTATTCCA +
Preference number: 6 (lower is better)
Translates to: TTAEHFSRRSSL*FSNRPSLRGIP
Trigger: TGGAATACCCCGCAACGAAGGTCTGTTCGAGAACAACAAGCTACTGCGGCGTGAGAAGTGTTCCGCCGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CCA 72 bp CAGACCTTCGTTGCGGGGTATTCCATGAGAACCATCTaGGAAAGTCAGCAGGCCAAAACCGTCTACTCTGCC +
Preference number: 6 (lower is better)
Translates to: QTFVAGYSMRTI*ESQQAKTVYSA
Trigger: GGCAGAGTAGACGGTTTTGGCCTGCTGACTTTCCCAGATGGTTCTCATGGAATACCCCGCAACGAAGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS TCA 72 bp TTGTTCTCGAACAGACCTTCGTTGCGGGGTATTCCATaGGAACCATCTGGGAAAGTCAGCAGGCCAAAACCG +
Preference number: 6 (lower is better)
Translates to: LFSNRPSLRGIP*EPSGKVSRPKP
Trigger: CGGTTTTGGCCTGCTGACTTTCCCAGATGGTTCTCATGGAATACCCCGCAACGAAGGTCTGTTCGAGAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS GCA 72 bp GCCGCAGTAGCTTGTTGTTCTCGAACAGACCTTCGTTaGGGGGTATTCCATGAGAACCATCTGGGAAAGTCA +
Preference number: 6 (lower is better)
Translates to: AAVACCSRTDLR*GVFHENHLGKS
Trigger: TGACTTTCCCAGATGGTTCTCATGGAATACCCCGCAACGAAGGTCTGTTCGAGAACAACAAGCTACTGCGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CCA 72 bp TATCGAATGAAGACTCCGACGCCATTGAACTTGCCCTaGGAAAACTCCCCCTCATACCTTGAGCCATCTGAG +
Preference number: 6 (lower is better)
Translates to: YRMKTPTPLNLP*ENSPSYLEPSE
Trigger: CTCAGATGGCTCAAGGTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 90 bp CCCTCAAAGGTCATGTTGTCATATCGAATGAAGACTCCGACGCCATaGAACTTGCCCTGGGAAAACTCCCCCTCATACCTTGAGCCATCT +
Preference number: 6 (lower is better)
Translates to: PSKVMLSYRMKTPTP*NLPWENSPSYLEPS
Trigger: AGATGGCTCAAGGTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 72 bp TTGTCATATCGAATGAAGACTCCGACGCCATTGAACTaGCCCTGGGAAAACTCCCCCTCATACCTTGAGCCA +
Preference number: 6 (lower is better)
Translates to: LSYRMKTPTPLN*PWENSPSYLEP
Trigger: TGGCTCAAGGTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 90 bp AAGGTCATGTTGTCATATCGAATGAAGACTCCGACGCCATTGAACTaGCCCTGGGAAAACTCCCCCTCATACCTTGAGCCATCTGAGAAG +
Preference number: 6 (lower is better)
Translates to: KVMLSYRMKTPTPLN*PWENSPSYLEPSEK
Trigger: CTTCTCAGATGGCTCAAGGTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10
CDS CAA 72 bp GTCATGTTGTCATATCGAATGAAGACTCCGACGCCATaGAACTTGCCCTGGGAAAACTCCCCCTCATACCTT +
Preference number: 6 (lower is better)
Translates to: VMLSYRMKTPTP*NLPWENSPSYL
Trigger: AAGGTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051772.10