RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MORC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039456

Ensembl transcript IDs: ENSMUST00000044068.10, ENSMUST00000201097.3, ENSMUST00000201754.4, ENSMUST00000202261.5, ENSMUST00000232639.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAGCAGTTCACAGGTTATGTCAAGAGTTGTGTGTCCACAGTGCCTaGGACACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAG +
Preference number: 1 (lower is better)
Translates to: PAVHRLCQELCVHSA*DTRMHRIQKDAALQ
Trigger: CTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAACTCTTGACATAACCTGTGAACTGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR TCA 90 bp ACCAAGTTTCCGCTTCATGCTACTGTTCTCAGGTTCAGACGCTGGTaGAGCAAGGTTGAGATTTATAATCCTTGCTGCAAAGGGACTCGT +
Preference number: 1 (lower is better)
Translates to: TKFPLHATVLRFRRW*SKVEIYNPCCKGTR
Trigger: ACGAGTCCCTTTGCAGCAAGGATTATAAATCTCAACCTTGCTTCACCAGCGTCTGAACCTGAGAACAGTAGCATGAAGCGGAAACTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR TCA 90 bp ATTTTTGGTAAAAACCATTGCATCTTTGCCCAGTCGCATAGAACCTaGCTTGAAGCCATTCCCGTACAATCCAACTGGGACATGACCATT +
Preference number: 1 (lower is better)
Translates to: IFGKNHCIFAQSHRT*LEAIPVQSNWDMTI
Trigger: AATGGTCATGTCCCAGTTGGATTGTACGGGAATGGCTTCAAGTCAGGTTCTATGCGACTGGGCAAAGATGCAATGGTTTTTACCAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR TCA 90 bp AGAATTGCTGCTAGGCTTGCTTTTGATTCTGTTAAATTAATCATCTaGCGGTGTTTGTTGAACGTCACGATCGGGACAACAACGTGCTCC +
Preference number: 1 (lower is better)
Translates to: RIAARLAFDSVKLII*RCLLNVTIGTTTCS
Trigger: GGAGCACGTTGTTGTCCCGATCGTGACGTTCAACAAACACCGTCAGATGATTAATTTAACAGAATCAAAAGCAAGCCTAGCAGCAATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR TCA 90 bp GGAGGATTACTTAATCTCCGAGTCTTTGCATTCAGAATTGATGAGTaGACACCAAGTTTCCGCTTCATGCTACTGTTCTCAGGTTCAGAC +
Preference number: 1 (lower is better)
Translates to: GGLLNLRVFAFRIDE*TPSFRFMLLFSGSD
Trigger: GTCTGAACCTGAGAACAGTAGCATGAAGCGGAAACTTGGTGTTCACTCATCAATTCTGAATGCAAAGACTCGGAGATTAAGTAATCCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR TCA 90 bp TGTACCCTTTCCTCCCTGCAGTCTCATCTAAATCCTCAGGAATTCTaGTGTCGTATTTATCCTTTTCAAAATCAAATTCTGTTGCATTTT +
Preference number: 1 (lower is better)
Translates to: CTLSSLQSHLNPQEF*CRIYPFQNQILLHF
Trigger: AAAATGCAACAGAATTTGATTTTGAAAAGGATAAATACGACATCAGAATTCCTGAGGATTTAGATGAGACTGCAGGGAGGAAAGGGTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR TCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCCGCTCTTCAGTCTGTaGCCTGGCACGCGTTACGTG +
Preference number: 2 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDPLFSL*PGTRYV
Trigger: CACGTAACGCGTGCCAGGTCACAGACTGAAGAGCGG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 90 bp CTATTACGCTGCTCAACCCCAGCAGTTCACAGGTTATGTCAAGAGTaGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAG +
Preference number: 2 (lower is better)
Translates to: LLRCSTPAVHRLCQE*CVHSAWDTRMHRIQ
Trigger: CTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAACTCTTGACATAACCTGTGAACTGCTGGGGTTGAGCAGCGTAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 90 bp CGCTTCATGCTACTGTTCTCAGGTTCAGACGCTGGTGAAGCAAGGTaGAGATTTATAATCCTTGCTGCAAAGGGACTCGTGACTTCAGAA +
Preference number: 2 (lower is better)
Translates to: RFMLLFSGSDAGEAR*RFIILAAKGLVTSE
Trigger: TTCTGAAGTCACGAGTCCCTTTGCAGCAAGGATTATAAATCTCAACCTTGCTTCACCAGCGTCTGAACCTGAGAACAGTAGCATGAAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR-3UTR GCA 90 bp GAGATTCCAAATGATGATTCTTGTCCCCTTCTTACCCATGATAGCATTGAGTTCATCGGGACAACAACGTaGTCCGCCTTTATGACTTCC +
Preference number: 2 (lower is better)
Translates to: EIPNDDSCPLLTHDSIEFIGTTT*SAFMTS
Trigger: GGAAGTCATAAAGGCGGAGCACGTTGTTGTCCCGAT...GAACTCAATGCTATCATGGGTAAGAAGGGGACAAGAATCATCATTTGGAATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR GCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACCTGGGACACTCGAATaGATAGAATACAGAAAGATG +
Preference number: 2 (lower is better)
Translates to: TTRKSQANSASFGFPLYEPGTLE*IEYRKM
Trigger: CATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGG...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR-3UTR TCA 90 bp TTAAGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATGTTGTTTGCCCAGTCGCATAGAACCTaGCTTGAAGCCATTCCCGTA +
Preference number: 2 (lower is better)
Translates to: LRKLHSIIPTTPTPMLFAQSHRT*LEAIPV
Trigger: TACGGGAATGGCTTCAAGTCAGGTTCTATGCGACTG...GGCAAACAACATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR CCA 90 bp ACTTCTGAGATTCCAAATGATGATTCTTGTCCCCTTCTTACCCATGATAGCATTCCCGTACAATCCAACTaGGACATGACCATTCATGGT +
Preference number: 2 (lower is better)
Translates to: TSEIPNDDSCPLLTHDSIPVQSN*DMTIHG
Trigger: ACCATGAATGGTCATGTCCCAGTTGGATTGTACGGG...AATGCTATCATGGGTAAGAAGGGGACAAGAATCATCATTTGGAATCTCAGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR CAA 90 bp TTTCAACTGGAGGATTACTTAATCTCCGAGTCTTTGCATTCAGAATaGATGAGTGAACACCAAGTTTCCGCTTCATGCTACTGTTCTCAG +
Preference number: 2 (lower is better)
Translates to: FQLEDYLISESLHSE*MSEHQVSASCYCSQ
Trigger: CTGAGAACAGTAGCATGAAGCGGAAACTTGGTGTTCACTCATCAATTCTGAATGCAAAGACTCGGAGATTAAGTAATCCTCCAGTTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR-3UTR TCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTCTGAAAAGCTCTTGGTaGAAAACACCAGTCTCTAGG +
Preference number: 2 (lower is better)
Translates to: LTISNLTTRKSQANSASFLKSSW*KTPVSR
Trigger: CCTAGAGACTGGTGTTTTTCACCAAGAGCTTTTCAG...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR-3UTR TCA 90 bp TTAAGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATGTTGTTTGCCAATCCAACTGGGACATaGCCATTCATGGTGACTTTG +
Preference number: 2 (lower is better)
Translates to: LRKLHSIIPTTPTPMLFANPTGT*PFMVTL
Trigger: CAAAGTCACCATGAATGGTCATGTCCCAGTTGGATT...GGCAAACAACATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR CAA 90 bp AGATTCCAAATGATGATTCTTGTCCCCTTCTTACCCATGATAGCATaGAGTTCTGCCAGTAATTTCTGTTCCGTAGAAAACAGAGAATGT +
Preference number: 2 (lower is better)
Translates to: RFQMMILVPFLPMIA*SSASNFCSVENREC
Trigger: ACATTCTCTGTTTTCTACGGAACAGAAATTACTGGCAGAACTCAATGCTATCATGGGTAAGAAGGGGACAAGAATCATCATTTGGAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR GCA 90 bp AGTAATTTCTGTTCCGTAGAAAACAGAGAATGTTCCAGAATTGCTGCTAGGCTTTTTGGTAAAAACCATTaGATCTTTGCCCAGTCGCAT +
Preference number: 2 (lower is better)
Translates to: SNFCSVENRECSRIAARLFGKNH*IFAQSH
Trigger: ATGCGACTGGGCAAAGATGCAATGGTTTTTACCAAA...AAGCCTAGCAGCAATTCTGGAACATTCTCTGTTTTCTACGGAACAGAAATTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR CCA 90 bp TTAAGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATGTTGTTTGCCCTCTCAGGGGCAATTTaGTCCATTCTTTCTTGTTTC +
Preference number: 2 (lower is better)
Translates to: LRKLHSIIPTTPTPMLFALSGAI*SILSCF
Trigger: GAAACAAGAAAGAATGGACCAAATTGCCCCTGAGAG...GGCAAACAACATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR CCA 72 bp CCTTGCTGCAAAGGGACTCGTGACTTCAGAAAGATGTaGTCTTGGAACGCTCTCCTTCACAGGGGAGAAGCT +
Preference number: 3 (lower is better)
Translates to: PCCKGTRDFRKM*SWNALLHRGEA
Trigger: AGCTTCTCCCCTGTGAAGGAGAGCGTTCCAAGACCACATCTTTCTGAAGTCACGAGTCCCTTTGCAGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR GCA 72 bp AAGAGTTGTGTGTCCACAGTGCCTGGGACACTCGAATaGATAGAATACAGAAAGATGCCGCTCTTCAGTCTG +
Preference number: 3 (lower is better)
Translates to: KSCVSTVPGTLE*IEYRKMPLFSL
Trigger: CAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAACTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR-3UTR CAA 90 bp GGTTCAGACGCTGGTGAAGCAAGGTTGAGATTTATAATCCTTGCTGCAAAGGGACAGAAAGATGTGGTCTaGGAACGCTCTCCTTCACAG +
Preference number: 3 (lower is better)
Translates to: GSDAGEARLRFIILAAKGQKDVV*ERSPSQ
Trigger: CTGTGAAGGAGAGCGTTCCAAGACCACATCTTTCTG...TCCCTTTGCAGCAAGGATTATAAATCTCAACCTTGCTTCACCAGCGTCTGAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR-3UTR CAA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACAGGTTATGTCAAGAGTaGTGTGTCCACAGTGCCTGG +
Preference number: 3 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDRLCQE*CVHSAW
Trigger: CCAGGCACTGTGGACACACAACTCTTGACATAACCT...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR TCA 72 bp GACTTGAAGCCATTCCCGTACAATCCAACTGGGACATaGCCATTCATGGTGACTTTGTCACTGAAGCCAAAG +
Preference number: 3 (lower is better)
Translates to: DLKPFPYNPTGT*PFMVTLSLKPK
Trigger: CTTTGGCTTCAGTGACAAAGTCACCATGAATGGTCATGTCCCAGTTGGATTGTACGGGAATGGCTTCAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR TCA 72 bp AAAAACCATTGCATCTTTGCCCAGTCGCATAGAACCTaGCTTGAAGCCATTCCCGTACAATCCAACTGGGAC +
Preference number: 3 (lower is better)
Translates to: KNHCIFAQSHRT*LEAIPVQSNWD
Trigger: GTCCCAGTTGGATTGTACGGGAATGGCTTCAAGTCAGGTTCTATGCGACTGGGCAAAGATGCAATGGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR CAA 90 bp ATTTATAATCCTTGCTGCAAAGGGACTCGTGACTTCAGAAAGATGTGGTCTTGGAGGGAGGATTTCCGGTaGTCTGATCCTGAATCTCTC +
Preference number: 3 (lower is better)
Translates to: IYNPCCKGTRDFRKMWSWREDFR*SDPESL
Trigger: GAGAGATTCAGGATCAGACAACCGGAAATCCTCCCT...CCAAGACCACATCTTTCTGAAGTCACGAGTCCCTTTGCAGCAAGGATTATAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR-3UTR CAA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCAACCTGAAAAGCTCTaGGTGAAAAACACCAGTCTC +
Preference number: 3 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDQPEKL*VKNTSL
Trigger: GAGACTGGTGTTTTTCACCAAGAGCTTTTCAGGTTG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR-3UTR CAA 90 bp GGTTCAGACGCTGGTGAAGCAAGGTTGAGATTTATAATCCTTGCTGCAAAGGGATCTGACTTGAAACACTaGTCTGATACAATAGCTCAG +
Preference number: 3 (lower is better)
Translates to: GSDAGEARLRFIILAAKGSDLKH*SDTIAQ
Trigger: CTGAGCTATTGTATCAGACAAGTGTTTCAAGTCAGA...TCCCTTTGCAGCAAGGATTATAAATCTCAACCTTGCTTCACCAGCGTCTGAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR-3UTR CAA 90 bp AGTCACTCTCAGGGGCAATTTGGTCCATTCTTTCTTGTTTCTTGTACCCTTTCCTTACCCATGATAGCATaGAGTTCTGCCAGTAATTTC +
Preference number: 3 (lower is better)
Translates to: SHSQGQFGPFFLVSCTLSLPMIA*SSASNF
Trigger: GAAATTACTGGCAGAACTCAATGCTATCATGGGTAA...GGAAAGGGTACAAGAAACAAGAAAGAATGGACCAAATTGCCCCTGAGAGTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR TCA 72 bp CTTAATCTCCGAGTCTTTGCATTCAGAATTGATGAGTaGACACCAAGTTTCCGCTTCATGCTACTGTTCTCA +
Preference number: 3 (lower is better)
Translates to: LNLRVFAFRIDE*TPSFRFMLLFS
Trigger: TGAGAACAGTAGCATGAAGCGGAAACTTGGTGTTCACTCATCAATTCTGAATGCAAAGACTCGGAGATTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
3UTR-3UTR CAA 90 bp ATGAGTTGGCTTAAGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATCGCATAGAACCTGACTaGAAGCCATTCCCGTACAAT +
Preference number: 3 (lower is better)
Translates to: MSWLKEITFYNSNHSNTHRIEPD*KPFPYN
Trigger: ATTGTACGGGAATGGCTTCAAGTCAGGTTCTATGCG...ATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCTTAAGCCAACTCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR CAA 90 bp AGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATGTTGTTTGCCTTTAAAACCATTGCATCTTaGCCCAGTCGCATAGAACCT +
Preference number: 3 (lower is better)
Translates to: RKLHSIIPTTPTPMLFAFKTIAS*PSRIEP
Trigger: AGGTTCTATGCGACTGGGCAAAGATGCAATGGTTTT...AAAGGCAAACAACATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR CAA 90 bp TTAAGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATGTTGTTTGCCGAGAATGTTCCAGAATaGCTGCTAGGCTTGCTTTTG +
Preference number: 3 (lower is better)
Translates to: LRKLHSIIPTTPTPMLFAENVPE*LLGLLL
Trigger: CAAAAGCAAGCCTAGCAGCAATTCTGGAACATTCTC...GGCAAACAACATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR TCA 72 bp AGCCAGAAAAATTGCACAAACTGTATTGTAACAACCTaGAAAGCTCTTGGTGAAAAACACCAGTCTCTAGGG +
Preference number: 3 (lower is better)
Translates to: SQKNCTNCIVTT*KALGEKHQSLG
Trigger: CCCTAGAGACTGGTGTTTTTCACCAAGAGCTTTTCAGGTTGTTACAATACAGTTTGTGCAATTTTTCTGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAACCTGAAAAGCTCTaGGTGAAAAACACCAGTCTC +
Preference number: 3 (lower is better)
Translates to: CSFKETTVATYPFTYTMAQPEKL*VKNTSL
Trigger: GAGACTGGTGTTTTTCACCAAGAGCTTTTCAGGTTG...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR-3UTR CAA 90 bp CTGCAGTTGAATCCAAAAGTAATTCTCACTGTTCTAGTTAAAAATTTAGGTCGGCCATTCATGGTGACTTaGTCACTGAAGCCAAAGCAA +
Preference number: 3 (lower is better)
Translates to: LQLNPKVILTVLVKNLGRPFMVT*SLKPKQ
Trigger: TTGCTTTGGCTTCAGTGACAAAGTCACCATGAATGG...CCGACCTAAATTTTTAACTAGAACAGTGAGAATTACTTTTGGATTCAACTGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR TCA 72 bp TCCTCCCTGCAGTCTCATCTAAATCCTCAGGAATTCTaGTGTCGTATTTATCCTTTTCAAAATCAAATTCTG +
Preference number: 3 (lower is better)
Translates to: SSLQSHLNPQEF*CRIYPFQNQIL
Trigger: CAGAATTTGATTTTGAAAAGGATAAATACGACATCAGAATTCCTGAGGATTTAGATGAGACTGCAGGGAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
3UTR-3UTR CAA 90 bp AGGAAATTACATTCTATAATTCCAACCACTCCAACACCCATGTTGTTTGCCTTTGAATTGCTGCTAGGCTaGCTTTTGATTCTGTTAAAT +
Preference number: 3 (lower is better)
Translates to: RKLHSIIPTTPTPMLFAFELLLG*LLILLN
Trigger: ATTTAACAGAATCAAAAGCAAGCCTAGCAGCAATTC...AAAGGCAAACAACATGGGTGTTGGAGTGGTTGGAATTATAGAATGTAATTTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR CCA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCTCGGCCGCTGCCTGTTaGCCTGTGGACTTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDASAAAC*PVDFSC
Trigger: GCAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGA...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACCCCCGTCCACATAACTaGCAGGCTCCTCGGCATTGC +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHPRPHN*QAPRHC
Trigger: GCAATGCCGAGGAGCCTGTCAGTTATGTGGACGGGG...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTACCCCGTCCACATAACTaGCAGGCTCCTCGGCATTGC +
Preference number: 4 (lower is better)
Translates to: MHRIQKDAALQSVTWHALPRPHN*QAPRHC
Trigger: GCAATGCCGAGGAGCCTGTCAGTTATGTGGACGGGG...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAATCGGCCGCTGCCTGTTaGCCTGTGGACTTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYESAAAC*PVDFSC
Trigger: GCAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGA...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCCTGCTGCAGCGCGCTaGACTGTCTCTTCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDPAAAR*TVSSAF
Trigger: AAAGGCTGAAGAGACAGTGCAGCGCGCTGCAGCAGG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACCAGTCGCATAGAACCTaGCTTGAAGCCATTCCCGTA +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHQSHRT*LEAIPV
Trigger: TACGGGAATGGCTTCAAGTCAGGTTCTATGCGACTG...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTACTTACAAGGTCAACATaGATGCCGCTCTGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: MHRIQKDAALQSVTWHALLTRST*MPLCSV
Trigger: CACTGAGCAGAGCGGCATTCATGTTGACCTTGTAAG...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACCTTACAAGGTCAACATaGATGCCGCTCTGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHLTRST*MPLCSV
Trigger: CACTGAGCAGAGCGGCATTCATGTTGACCTTGTAAG...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACACTTGTCCAGCTGCCTaGACACATCATCAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHTCPAA*THHQAA
Trigger: TGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGT...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCGCAGCTGTCCTACGTTaGCTCGAAGAGAACGAAGTT +
Preference number: 4 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDAAAVLR*LEENEV
Trigger: AACTTCGTTCTCTTCGAGTCAACGTAGGACAGCTGC...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCATCGGGACAACAACGTaGTCCGCCTTTATGACTTCC +
Preference number: 4 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDAIGTTT*SAFMTS
Trigger: GGAAGTCATAAAGGCGGAGCACGTTGTTGTCCCGAT...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTAATCGGGACAACAACGTaGTCCGCCTTTATGACTTCC +
Preference number: 4 (lower is better)
Translates to: MHRIQKDAALQSVTWHALIGTTT*SAFMTS
Trigger: GGAAGTCATAAAGGCGGAGCACGTTGTTGTCCCGAT...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAATGCAGGAAGCCTGGCTaGACTCACTCTTCACCTGCT +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYECRKPG*THSSPA
Trigger: AGCAGGTGAAGAGTGAGTGCAGCCAGGCTTCCTGCA...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACTGCAGGAAGCCTGGCTaGACTCACTCTTCACCTGCT +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDCRKPG*THSSPA
Trigger: AGCAGGTGAAGAGTGAGTGCAGCCAGGCTTCCTGCA...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCCTGTGGACTTCAGCTaGTCCACTTCAGTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDPVDFS*STSVCS
Trigger: GCTGCAGACTGAAGTGGAGCAGCTGAAGTCCACAGG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACTCAGTGCAGGAAGCCTaGCTGCACTCACTCTTCACC +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDSVQEA*LHSLFT
Trigger: GGTGAAGAGTGAGTGCAGCCAGGCTTCCTGCACTGA...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACACTGGTCCCTCTCAATaGTGCACTTGTCCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDTGPSQ*CTCPAA
Trigger: GGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGT...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCCGTCCACGTCATAATTaGCCTGCTGAAGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDARPRHN*PAEDPD
Trigger: ATCTGGATCTTCAGCAGGTCAATTATGACGTGGACG...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp GTGCTCCGCCTTTATGACTTCCAGGTAGGTCTGAGACAAGAAGCCCACACTCATTACTGTGACCTCCCTTaGTGTCTTTTCACATCTCTT +
Preference number: 4 (lower is better)
Translates to: VLRLYDFQVGLRQEAHTHYCDLP*CLFTSL
Trigger: AAGAGATGTGAAAAGACATCAAGGGAGGTCACAGTA...ATGAGTGTGGGCTTCTTGTCTCAGACCTACCTGGAAGTCATAAAGGCGGAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR GCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGCCTGCTGCAGCGCGCTaGACTGTCTCTTCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILPAAAR*TVSSAF
Trigger: AAAGGCTGAAGAGACAGTGCAGCGCGCTGCAGCAGG...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCCCCGTACAATCCAACTaGGACATGACCATTCATGGT +
Preference number: 4 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDAPVQSN*DMTIHG
Trigger: ACCATGAATGGTCATGTCCCAGTTGGATTGTACGGG...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACCGCTCTGCTCAGTGTaGCTCTGTTCTGACTTGACT +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYEPLCSV*LCSDLT
Trigger: AGTCAAGTCAGAACAGAGCCACACTGAGCAGAGCGG...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCCGCTCTGCTCAGTGTaGCTCTGTTCTGACTTGACT +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDPLCSV*LCSDLT
Trigger: AGTCAAGTCAGAACAGAGCCACACTGAGCAGAGCGG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp GTGCTCCGCCTTTATGACTTCCAGGTAGGTCTGAGACAAGAAGCCCACACTCATCGTTGCCATTATCAGTaGATGTCAAGCATATATGGT +
Preference number: 4 (lower is better)
Translates to: VLRLYDFQVGLRQEAHTHRCHYQ*MSSIYG
Trigger: ACCATATATGCTTGACATTCACTGATAATGGCAACG...ATGAGTGTGGGCTTCTTGTCTCAGACCTACCTGGAAGTCATAAAGGCGGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR TCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCAGTCGCATAGAACCTaGCTTGAAGCCATTCCCGTA +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDQSHRT*LEAIPV
Trigger: TACGGGAATGGCTTCAAGTCAGGTTCTATGCGACTG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACACTTGTCCAGCTGCCTaGACACATCATCAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDTCPAA*THHQAA
Trigger: TGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGT...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAAGAAGAGAACGAAGTTTaGGGCTTTCCCCGTCCACAT +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYEEENEV*GFPRPH
Trigger: ATGTGGACGGGGAAAGCCTCAAACTTCGTTCTCTTC...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGCGTCCACCTCGCTTTTaGTCTCAGTGCAGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILRPPRF*SQCRKP
Trigger: AGGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACG...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGCTGCCTGTTGGCCTGTaGACTTCAGCTGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILLPVGL*TSAAPL
Trigger: AAGTGGAGCAGCTGAAGTCCACAGGCCAACAGGCAG...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 72 bp CTACTGTTCTCAGGTTCAGACGCTGGTGAAGCAAGGTaGAGATTTATAATCCTTGCTGCAAAGGGACTCGTG +
Preference number: 4 (lower is better)
Translates to: LLFSGSDAGEAR*RFIILAAKGLV
Trigger: CACGAGTCCCTTTGCAGCAAGGATTATAAATCTCAACCTTGCTTCACCAGCGTCTGAACCTGAGAACAGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
CDS-3UTR TCA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTACTGAACGGCCAGGTATaGCTAGTAGAATTTGTATGT +
Preference number: 4 (lower is better)
Translates to: MHRIQKDAALQSVTWHALLNGQV*LVEFVC
Trigger: ACATACAAATTCTACTAGTCATACCTGGCCGTTCAG...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCTCAGTTCTTGTAACTaGTGGCTAGTGGCATCTACC +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDLSSCN*WLVAST
Trigger: GGTAGATGCCACTAGCCATCAGTTACAAGAACTGAG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGTCCAGGCTCTCAGCCTaGCCGTTAACACTGTCAAGT +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILSRLSA*PLTLSS
Trigger: ACTTGACAGTGTTAACGGTCAGGCTGAGAGCCTGGA...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTCGTCCACCTCGCTTTTaGTCTCAGTGCAGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFRPPRF*SQCRKP
Trigger: AGGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACG...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTCCTGTGGACTTCAGCTaGTCCACTTCAGTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFPVDFS*STSVCS
Trigger: GCTGCAGACTGAAGTGGAGCAGCTGAAGTCCACAGG...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTACTCTCAGGGGCAATTTaGTCCATTCTTTCTTGTTTC +
Preference number: 4 (lower is better)
Translates to: MHRIQKDAALQSVTWHALLSGAI*SILSCF
Trigger: GAAACAAGAAAGAATGGACCAAATTGCCCCTGAGAG...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCGTGGGTCAGGGTTATTaGAGCAATACCATTTTTCTG +
Preference number: 4 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDAVGQGY*SNTIFL
Trigger: CAGAAAAATGGTATTGCTCCAATAACCCTGACCCAC...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTACTGGTCCCTCTCAATaGTGCACTTGTCCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFTGPSQ*CTCPAA
Trigger: GGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGT...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 72 bp CTCTCAGGGGCAATTTGGTCCATTCTTTCTTGTTTCTaGTACCCTTTCCTCCCTGCAGTCTCATCTAAATCC +
Preference number: 4 (lower is better)
Translates to: LSGAIWSILSCF*YPFLPAVSSKS
Trigger: GGATTTAGATGAGACTGCAGGGAGGAAAGGGTACAAGAAACAAGAAAGAATGGACCAAATTGCCCCTGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR TCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACCGTTGCCATTATCAGTaGATGTCAAGCATATATGGT +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHRCHYQ*MSSIYG
Trigger: ACCATATATGCTTGACATTCACTGATAATGGCAACG...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAAAATCCAACTGGGACATaGCCATTCATGGTGACTTTG +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYENPTGT*PFMVTL
Trigger: CAAAGTCACCATGAATGGTCATGTCCCAGTTGGATT...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACTTTGGTAAAAACCATTaGATCTTTGCCCAGTCGCAT +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHFGKNH*IFAQSH
Trigger: ATGCGACTGGGCAAAGATGCAATGGTTTTTACCAAA...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAAGACTTCAGAAAGATGTaGTCTTGGAACGCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYEDFRKM*SWNALL
Trigger: AAGGAGAGCGTTCCAAGACCACATCTTTCTGAAGTC...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACTCAGTTTCAGTAGACTaGTGGCACTTCTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDSVSVD*WHFSFF
Trigger: GAAGAAGGAGAAGTGCCACCAGTCTACTGAAACTGA...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACCTGAGAATGAATGTGTaGCTTCTCTATTTCCAACAA +
Preference number: 4 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHLRMNV*LLYFQQ
Trigger: TTGTTGGAAATAGAGAAGTCACACATTCATTCTCAG...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGCGTCCACGTCATAATTaGCCTGCTGAAGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILRPRHN*PAEDPD
Trigger: ATCTGGATCTTCAGCAGGTCAATTATGACGTGGACG...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAAAACTTCAAGATCTACTaGAGGCTTGGGGGTACTATT +
Preference number: 4 (lower is better)
Translates to: TTRKSQANSASFGFPLYENFKIY*RLGGTI
Trigger: AATAGTACCCCCAAGCCTGCAGTAGATCTTGAAGTT...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGTCCTGGAGGTGGAAGTaGTTGTGGAACTGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMSWRWK*LWNWPG
Trigger: TCCAGGCCAGTTCCACAAGCACTTCCACCTCCAGGA...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTATCCTGGAGGTGGAAGTaGTTGTGGAACTGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVSWRWK*LWNWPG
Trigger: TCCAGGCCAGTTCCACAAGCACTTCCACCTCCAGGA...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTACCTCGTTCTTGTACTaGTCCCTCTCAATGGTGCAC +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFTSFLY*SLSMVH
Trigger: GTGCACCATTGAGAGGGACCAGTACAAGAACGAGGT...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCACTGCCTGTTGGCCTGTaGACTTCAGCTGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: CSFKETTVATYPFTYTMALPVGL*TSAAPL
Trigger: AAGTGGAGCAGCTGAAGTCCACAGGCCAACAGGCAG...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 72 bp TTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTaGGCTTTCCTCTCTATGAACAGAATCATGTCAGAG +
Preference number: 4 (lower is better)
Translates to: LPQEKARQTQLA*AFLSMNRIMSE
Trigger: CTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp TTCCTCCCTGCAGTCTCATCTAAATCCTCAGGAATTCTGATGTCGTATTTATCCCTGAACGGCCAGGTATaGCTAGTAGAATTTGTATGT +
Preference number: 4 (lower is better)
Translates to: FLPAVSSKSSGILMSYLSLNGQV*LVEFVC
Trigger: ACATACAAATTCTACTAGTCATACCTGGCCGTTCAG...GGATAAATACGACATCAGAATTCCTGAGGATTTAGATGAGACTGCAGGGAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR TCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTCTCAGTTCTTGTAACTaGTGGCTAGTGGCATCTACC +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFLSSCN*WLVAST
Trigger: GGTAGATGCCACTAGCCATCAGTTACAAGAACTGAG...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCATCCAGGCTCTCAGCCTaGCCGTTAACACTGTCAAGT +
Preference number: 4 (lower is better)
Translates to: CSFKETTVATYPFTYTMASRLSA*PLTLSS
Trigger: ACTTGACAGTGTTAACGGTCAGGCTGAGAGCCTGGA...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACTTTGGTAAAAACCATTaGATCTTTGCCCAGTCGCAT +
Preference number: 4 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDFGKNH*IFAQSH
Trigger: ATGCGACTGGGCAAAGATGCAATGGTTTTTACCAAA...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 72 bp GAGGATTACTTAATCTCCGAGTCTTTGCATTCAGAATaGATGAGTGAACACCAAGTTTCCGCTTCATGCTAC +
Preference number: 4 (lower is better)
Translates to: EDYLISESLHSE*MSEHQVSASCY
Trigger: GTAGCATGAAGCGGAAACTTGGTGTTCACTCATCAATTCTGAATGCAAAGACTCGGAGATTAAGTAATCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232639.2
CDS-3UTR TCA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCAGAAGAGAACGAAGTTTaGGGCTTTCCCCGTCCACAT +
Preference number: 4 (lower is better)
Translates to: CSFKETTVATYPFTYTMAEENEV*GFPRPH
Trigger: ATGTGGACGGGGAAAGCCTCAAACTTCGTTCTCTTC...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTAGCAGCTGTCCTACGTTaGCTCGAAGAGAACGAAGTT +
Preference number: 4 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVAAVLR*LEENEV
Trigger: AACTTCGTTCTCTTCGAGTCAACGTAGGACAGCTGC...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGGAGATTTATAATCCTTaGTGCAAAGGGACTCGTGAC +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILEIYNP*CKGTRD
Trigger: GTCACGAGTCCCTTTGCAGCAAGGATTATAAATCTC...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGGATCTACTGCAGGCTTaGGGGTACTATTTTCTTCTA +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILDLLQA*GYYFLL
Trigger: TAGAAGAAAATAGTACCCCCAAGCCTGCAGTAGATC...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTTCAGTTTCAGTAGACTaGTGGCACTTCTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFSVSVD*WHFSFF
Trigger: GAAGAAGGAGAAGTGCCACCAGTCTACTGAAACTGA...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTAACCTCGTTCTTGTACTaGTCCCTCTCAATGGTGCAC +
Preference number: 4 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVTSFLY*SLSMVH
Trigger: GTGCACCATTGAGAGGGACCAGTACAAGAACGAGGT...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGATTTATAATCCTTGCTaGAAAGGGACTCGTGACTTC +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILIYNPC*KGTRDF
Trigger: GAAGTCACGAGTCCCTTTGCAGCAAGGATTATAAAT...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGCCCGTACAATCCAACTaGGACATGACCATTCATGGT +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMPVQSN*DMTIHG
Trigger: ACCATGAATGGTCATGTCCCAGTTGGATTGTACGGG...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCAAGAAAGATGTGGTCTTaGAACGCTCTCCTTCACAGG +
Preference number: 4 (lower is better)
Translates to: CSFKETTVATYPFTYTMARKMWS*NALLHR
Trigger: CCTGTGAAGGAGAGCGTTCCAAGACCACATCTTTCT...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGAGAAAGATGTGGTCTTaGAACGCTCTCCTTCACAGG +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMRKMWS*NALLHR
Trigger: CCTGTGAAGGAGAGCGTTCCAAGACCACATCTTTCT...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGATCTACTGCAGGCTTaGGGGTACTATTTTCTTCTA +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFDLLQA*GYYFLL
Trigger: TAGAAGAAAATAGTACCCCCAAGCCTGCAGTAGATC...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
3UTR CAA 72 bp ATGATGATTCTTGTCCCCTTCTTACCCATGATAGCATaGAGTTCTGCCAGTAATTTCTGTTCCGTAGAAAAC +
Preference number: 4 (lower is better)
Translates to: MMILVPFLPMIA*SSASNFCSVEN
Trigger: GTTTTCTACGGAACAGAAATTACTGGCAGAACTCAATGCTATCATGGGTAAGAAGGGGACAAGAATCATCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR TCA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTCGTTGCCATTATCAGTaGATGTCAAGCATATATGGT +
Preference number: 4 (lower is better)
Translates to: LTISNLTTRKSQANSASFRCHYQ*MSSIYG
Trigger: ACCATATATGCTTGACATTCACTGATAATGGCAACG...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGAATCCAACTGGGACATaGCCATTCATGGTGACTTTG +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMNPTGT*PFMVTL
Trigger: CAAAGTCACCATGAATGGTCATGTCCCAGTTGGATT...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR TCA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGCTGAGAATGAATGTGTaGCTTCTCTATTTCCAACAA +
Preference number: 4 (lower is better)
Translates to: TTVATYPFTYTMAQPSILLRMNV*LLYFQQ
Trigger: TTGTTGGAAATAGAGAAGTCACACATTCATTCTCAG...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGACAGTTTCTGAACTGTaGGTCAGGGTTATTGGAGCA +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMTVSEL*VRVIGA
Trigger: TGCTCCAATAACCCTGACCCACAGTTCAGAAACTGT...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCAACAGTTTCTGAACTGTaGGTCAGGGTTATTGGAGCA +
Preference number: 4 (lower is better)
Translates to: CSFKETTVATYPFTYTMATVSEL*VRVIGA
Trigger: TGCTCCAATAACCCTGACCCACAGTTCAGAAACTGT...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTAGACTTCAGAAAGATGTaGTCTTGGAACGCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVDFRKM*SWNALL
Trigger: AAGGAGAGCGTTCCAAGACCACATCTTTCTGAAGTC...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGGAGATTTATAATCCTTaGTGCAAAGGGACTCGTGAC +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMEIYNP*CKGTRD
Trigger: GTCACGAGTCCCTTTGCAGCAAGGATTATAAATCTC...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR GCA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTAAACTTCAAGATCTACTaGAGGCTTGGGGGTACTATT +
Preference number: 4 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVNFKIY*RLGGTI
Trigger: AATAGTACCCCCAAGCCTGCAGTAGATCTTGAAGTT...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCACTCTCAGGGGCAATTTaGTCCATTCTTTCTTGTTTC +
Preference number: 4 (lower is better)
Translates to: CSFKETTVATYPFTYTMALSGAI*SILSCF
Trigger: GAAACAAGAAAGAATGGACCAAATTGCCCCTGAGAG...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGGTGGGTCAGGGTTATTaGAGCAATACCATTTTTCTG +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMVGQGY*SNTIFL
Trigger: CAGAAAAATGGTATTGCTCCAATAACCCTGACCCAC...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CCA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGGCAATACCATTTTTCTaGAAGCTGATCTATCCCATC +
Preference number: 4 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMAIPFF*KLIYPI
Trigger: GATGGGATAGATCAGCTTCCAGAAAAATGGTATTGC...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 90 bp CACGGTCAGGCCTGGTGCATCGGTCTGAGTGGAGACCGTAATGCCTaGGTCACTCCTGGAGGTGGAAGTGCTTGTGGAACTGGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: HGQAWCIGLSGDRNA*VTPGGGSACGTGLD
Trigger: GTCCAGGCCAGTTCCACAAGCACTTCCACCTCCAGGAGTGACCCAGGCATTACGGTCTCCACTCAGACCGATGCACCAGGCCTGACCGTG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 90 bp ACGGCCATCTCGTCCACCTCGCTTTTGCTCTCAGTGCAGGAAGCCTaGCTGCACTCACTCTTCACCTGCTGCAGCGCGCTGCACTGTCTC +
Preference number: 5 (lower is better)
Translates to: TAISSTSLLLSVQEA*LHSLFTCCSALHCL
Trigger: GAGACAGTGCAGCGCGCTGCAGCAGGTGAAGAGTGAGTGCAGCCAGGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACGAGATGGCCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 90 bp GGCTCCTCGGCATTGCTTGCAGTGGACCCATCGGCCGCTGCCTGTTaGCCTGTGGACTTCAGCTGCTCCACTTCAGTCTGCAGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: GSSALLAVDPSAAAC*PVDFSCSTSVCSSS
Trigger: TGAAGAGCTGCAGACTGAAGTGGAGCAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGATGGGTCCACTGCAAGCAATGCCGAGGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 90 bp CGGCATTGCTTGCAGTGGACCCATCGGCCGCTGCCTGTTGGCCTGTaGACTTCAGCTGCTCCACTTCAGTCTGCAGCTCTTCACACTGAG +
Preference number: 5 (lower is better)
Translates to: RHCLQWTHRPLPVGL*TSAAPLQSAALHTE
Trigger: CTCAGTGTGAAGAGCTGCAGACTGAAGTGGAGCAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGATGGGTCCACTGCAAGCAATGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 90 bp ACCTCGTTCTTGTACTGGTCCCTCTCAATGGTGCACTTGTCCAGCTaGCTGAACACATCATCAAGCTGCACGGCCATCTCGTCCACCTCG +
Preference number: 5 (lower is better)
Translates to: TSFLYWSLSMVHLSS*LNTSSSCTAISSTS
Trigger: CGAGGTGGACGAGATGGCCGTGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGTACAAGAACGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 90 bp CGTTCTTGTACTGGTCCCTCTCAATGGTGCACTTGTCCAGCTGCCTaGACACATCATCAAGCTGCACGGCCATCTCGTCCACCTCGCTTT +
Preference number: 5 (lower is better)
Translates to: RSCTGPSQWCTCPAA*THHQAARPSRPPRF
Trigger: AAAGCGAGGTGGACGAGATGGCCGTGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGTACAAGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 90 bp CTCTCAATGGTGCACTTGTCCAGCTGCCTGAACACATCATCAAGCTaGACGGCCATCTCGTCCACCTCGCTTTTGCTCTCAGTGCAGGAA +
Preference number: 5 (lower is better)
Translates to: LSMVHLSSCLNTSSS*TAISSTSLLLSVQE
Trigger: TTCCTGCACTGAGAGCAAAAGCGAGGTGGACGAGATGGCCGTGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGTGCACCATTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 90 bp CATGTCCTCTTCCATACTTTCTTCCTTTTTCACGGTCAGGCCTGGTaGATCGGTCTGAGTGGAGACCGTAATGCCTGGGTCACTCCTGGA +
Preference number: 5 (lower is better)
Translates to: HVLFHTFFLFHGQAW*IGLSGDRNAWVTPG
Trigger: TCCAGGAGTGACCCAGGCATTACGGTCTCCACTCAGACCGATGCACCAGGCCTGACCGTGAAAAAGGAAGAAAGTATGGAAGAGGACATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 90 bp ACCCATGTCCTCTTCCATACTTTCTTCCTTTTTCACGGTCAGGCCTaGTGCATCGGTCTGAGTGGAGACCGTAATGCCTGGGTCACTCCT +
Preference number: 5 (lower is better)
Translates to: THVLFHTFFLFHGQA*CIGLSGDRNAWVTP
Trigger: AGGAGTGACCCAGGCATTACGGTCTCCACTCAGACCGATGCACCAGGCCTGACCGTGAAAAAGGAAGAAAGTATGGAAGAGGACATGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 90 bp TCTCCTGCACTTTTGCCTCAGTACCGACACAGGACAGGGTGGCTGTaGCGTTCCTCACACCCATGTCCTCTTCCATACTTTCTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: SPALLPQYRHRTGWL*RSSHPCPLPYFLPF
Trigger: AAAAGGAAGAAAGTATGGAAGAGGACATGGGTGTGAGGAACGGCACAGCCACCCTGTCCTGTGTCGGTACTGAGGCAAAAGTGCAGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTATGGAGGTGGAAGTGCTaGTGGAACTGGCCTGGACAC +
Preference number: 5 (lower is better)
Translates to: MHRIQKDAALQSVTWHALWRWKC*WNWPGH
Trigger: GTGTCCAGGCCAGTTCCACAAGCACTTCCACCTCCA...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 90 bp GAACTGGCCTGGACACAAGGCTTAGGACTGCTTACAAGGTCAACATaGATGCCGCTCTGCTCAGTGTGGCTCTGTTCTGACTTGACTTCA +
Preference number: 5 (lower is better)
Translates to: ELAWTQGLGLLTRST*MPLCSVWLCSDLTS
Trigger: TGAAGTCAAGTCAGAACAGAGCCACACTGAGCAGAGCGGCATTCATGTTGACCTTGTAAGCAGTCCTAAGCCTTGTGTCCAGGCCAGTTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAATCGTCCACCTCGCTTTaGCTCTCAGTGCAGGAAGCC +
Preference number: 5 (lower is better)
Translates to: TTRKSQANSASFGFPLYESSTSL*LSVQEA
Trigger: GGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACGA...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCAGGGAGGATTTCCGGTaGTCTGATCCTGAATCTCTC +
Preference number: 5 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDAREDFR*SDPESL
Trigger: GAGAGATTCAGGATCAGACAACCGGAAATCCTCCCT...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACAGCAGCTGTCCTACGTaGACTCGAAGAGAACGAAGT +
Preference number: 5 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHSSCPT*TRRERS
Trigger: ACTTCGTTCTCTTCGAGTCAACGTAGGACAGCTGCT...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCCCATTCATGGTGACTTaGTCACTGAAGCCAAAGCTT +
Preference number: 5 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDAPFMVT*SLKPKL
Trigger: AAGCTTTGGCTTCAGTGACAAAGTCACCATGAATGG...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCAGAAAGATGTGGTCTaGGAACGCTCTCCTTCACAG +
Preference number: 5 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDQKDVV*ERSPSQ
Trigger: CTGTGAAGGAGAGCGTTCCAAGACCACATCTTTCTG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTAAGATCTACTGCAGGCTaGGGGGTACTATTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: MHRIQKDAALQSVTWHALRSTAG*GVLFSS
Trigger: AGAAGAAAATAGTACCCCCAAGCCTGCAGTAGATCT...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGATCGGCCGCTGCCTGTaGGCCTGTGGACTTCAGCTG +
Preference number: 5 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMIGRCL*ACGLQL
Trigger: CAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGAT...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 90 bp CTGCTCCACTTCAGTCTGCAGCTCTTCACACTGAGAATGAATGTGTaGCTTCTCTATTTCCAACAACTGAACCTCGTTCTTGTACTGGTC +
Preference number: 5 (lower is better)
Translates to: LLHFSLQLFTLRMNV*LLYFQQLNLVLVLV
Trigger: GACCAGTACAAGAACGAGGTTCAGTTGTTGGAAATAGAGAAGTCACACATTCATTCTCAGTGTGAAGAGCTGCAGACTGAAGTGGAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACCGCATAGAACCTGACTaGAAGCCATTCCCGTACAAT +
Preference number: 5 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDRIEPD*KPFPYN
Trigger: ATTGTACGGGAATGGCTTCAAGTCAGGTTCTATGCG...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTAACTCTCAGGGGCAATTaGGTCCATTCTTTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: MHRIQKDAALQSVTWHALTLRGN*VHSFLF
Trigger: AAACAAGAAAGAATGGACCAAATTGCCCCTGAGAGT...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCACTCTCAGGGGCAATTaGGTCCATTCTTTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDATLRGN*VHSFLF
Trigger: AAACAAGAAAGAATGGACCAAATTGCCCCTGAGAGT...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTATGTGGGTCAGGGTTATaGGAGCAATACCATTTTTCT +
Preference number: 5 (lower is better)
Translates to: MHRIQKDAALQSVTWHALCGSGL*EQYHFS
Trigger: AGAAAAATGGTATTGCTCCAATAACCCTGACCCACA...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTAGGTCTCCTGCACTTTaGCCTCAGTACCGACACAGG +
Preference number: 5 (lower is better)
Translates to: LTISNLTTRKSQANSASFRSPAL*PQYRHR
Trigger: CCTGTGTCGGTACTGAGGCAAAAGTGCAGGAGACCT...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 90 bp AACTGTGGGTCAGGGTTATTGGAGCAATACCATTTTTCTGGAAGCTaGTCTATCCCATCTGGTAACTTTCGCCACTTTAGACAAGCGTCA +
Preference number: 5 (lower is better)
Translates to: NCGSGLLEQYHFSGS*SIPSGNFRHFRQAS
Trigger: TGACGCTTGTCTAAAGTGGCGAAAGTTACCAGATGGGATAGATCAGCTTCCAGAAAAATGGTATTGCTCCAATAACCCTGACCCACAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044068.10
ENSMUST00000201097.3
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGTGTGTCCACAGTGCCTGGGACACTCGAATGCATAGAATACAGAAAGATGCCTTACCCATGATAGCATaGAGTTCTGCCAGTAATTTC +
Preference number: 5 (lower is better)
Translates to: LCVHSAWDTRMHRIQKDALPMIA*SSASNF
Trigger: GAAATTACTGGCAGAACTCAATGCTATCATGGGTAA...GGCATCTTTCTGTATTCTATGCATTCGAGTGTCCCAGGCACTGTGGACACACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACTCGAATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACTGTAGGCAAGACTCTTaGAAACTAGTTGTGTCTTCA +
Preference number: 5 (lower is better)
Translates to: TRMHRIQKDAALQSVTWHCRQDS*KLVVSS
Trigger: TGAAGACACAACTAGTTTCAAAGAGTCTTGCCTACA...GTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCATTCGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGCAGAAAGATGTGGTCTaGGAACGCTCTCCTTCACAG +
Preference number: 5 (lower is better)
Translates to: TTVATYPFTYTMAQPSILQKDVV*ERSPSQ
Trigger: CTGTGAAGGAGAGCGTTCCAAGACCACATCTTTCTG...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGTGGAGGTGGAAGTGCTaGTGGAACTGGCCTGGACAC +
Preference number: 5 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMWRWKC*WNWPGH
Trigger: GTGTCCAGGCCAGTTCCACAAGCACTTCCACCTCCA...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCATCGTCCACCTCGCTTTaGCTCTCAGTGCAGGAAGCC +
Preference number: 5 (lower is better)
Translates to: CSFKETTVATYPFTYTMASSTSL*LSVQEA
Trigger: GGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACGA...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGAGCAGCTGTCCTACGTaGACTCGAAGAGAACGAAGT +
Preference number: 5 (lower is better)
Translates to: TTVATYPFTYTMAQPSILSSCPT*TRRERS
Trigger: ACTTCGTTCTCTTCGAGTCAACGTAGGACAGCTGCT...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAATGTGGGTCAGGGTTATaGGAGCAATACCATTTTTCT +
Preference number: 5 (lower is better)
Translates to: TTRKSQANSASFGFPLYECGSGL*EQYHFS
Trigger: AGAAAAATGGTATTGCTCCAATAACCCTGACCCACA...TTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ATGCATAGAATACAGAAAGATGCCGCTCTTCAGTCTGTGACCTGGCACGCGTTATTAATCTCCGAGTCTTaGCATTCAGAATTGATGAGT +
Preference number: 5 (lower is better)
Translates to: MHRIQKDAALQSVTWHALLISES*HSELMS
Trigger: ACTCATCAATTCTGAATGCAAAGACTCGGAGATTAA...TAACGCGTGCCAGGTCACAGACTGAAGAGCGGCATCTTTCTGTATTCTATGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp AGTAATTTCTGTTCCGTAGAAAACAGAGAATGTTCCAGAATTGCTGCTAGGCTTTCTGCTGTCATCCCGTaGCCATTATCAGTGAATGTC +
Preference number: 5 (lower is better)
Translates to: SNFCSVENRECSRIAARLSAVIP*PLSVNV
Trigger: GACATTCACTGATAATGGCAACGGGATGACAGCAGA...AAGCCTAGCAGCAATTCTGGAACATTCTCTGTTTTCTACGGAACAGAAATTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4
CDS-3UTR CAA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGAAAACCATTGCATCTTaGCCCAGTCGCATAGAACCT +
Preference number: 5 (lower is better)
Translates to: TTVATYPFTYTMAQPSILKTIAS*PSRIEP
Trigger: AGGTTCTATGCGACTGGGCAAAGATGCAATGGTTTT...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGGAGAATGTTCCAGAATaGCTGCTAGGCTTGCTTTTG +
Preference number: 5 (lower is better)
Translates to: TTVATYPFTYTMAQPSILENVPE*LLGLLL
Trigger: CAAAAGCAAGCCTAGCAGCAATTCTGGAACATTCTC...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACTGTAGGCAAGACTCTTaGAAACTAGTTGTGTCTTCA +
Preference number: 5 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDCRQDS*KLVVSS
Trigger: TGAAGACACAACTAGTTTCAAAGAGTCTTGCCTACA...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGAGATCTACTGCAGGCTaGGGGGTACTATTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: TTVATYPFTYTMAQPSILRSTAG*GVLFSS
Trigger: AGAAGAAAATAGTACCCCCAAGCCTGCAGTAGATCT...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTAAAACCATTGCATCTTaGCCCAGTCGCATAGAACCT +
Preference number: 5 (lower is better)
Translates to: LTISNLTTRKSQANSASFKTIAS*PSRIEP
Trigger: AGGTTCTATGCGACTGGGCAAAGATGCAATGGTTTT...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp ACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAGCCCTCGATTTTGATTCTTTCTTGTTTCTaGTACCCTTTCCTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: TTVATYPFTYTMAQPSILILSCF*YPFLPA
Trigger: TGCAGGGAGGAAAGGGTACAAGAAACAAGAAAGAAT...CAAAATCGAGGGCTGTGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCAAGGGAGGATTTCCGGTaGTCTGATCCTGAATCTCTC +
Preference number: 5 (lower is better)
Translates to: CSFKETTVATYPFTYTMAREDFR*SDPESL
Trigger: GAGAGATTCAGGATCAGACAACCGGAAATCCTCCCT...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GCAAACTCAGCTAGCTTTGGCTTTCCTCTCTATGAACAGAATCATGTCAGAGACTCTTTGCATTCAGAATaGATGAGTGAACACCAAGTT +
Preference number: 5 (lower is better)
Translates to: ANSASFGFPLYEQNHVRDSLHSE*MSEHQV
Trigger: AACTTGGTGTTCACTCATCAATTCTGAATGCAAAGA...GTCTCTGACATGATTCTGTTCATAGAGAGGAAAGCCAAAGCTAGCTGAGTTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 90 bp TCTGCTGTCATCCCGTTGCCATTATCAGTGAATGTCAAGCATATATaGTCACTAATCACTGTTTTATCGATCCAGATCTGTTTAGCATTC +
Preference number: 5 (lower is better)
Translates to: SAVIPLPLSVNVKHI*SLITVLSIQICLAF
Trigger: GAATGCTAAACAGATCTGGATCGATAAAACAGTGATTAGTGACCATATATGCTTGACATTCACTGATAATGGCAACGGGATGACAGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044068.10
ENSMUST00000201754.4
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTATCTGCTGTCATCCCGTaGCCATTATCAGTGAATGTC +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVSAVIP*PLSVNV
Trigger: GACATTCACTGATAATGGCAACGGGATGACAGCAGA...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCATCTGCTGTCATCCCGTaGCCATTATCAGTGAATGTC +
Preference number: 5 (lower is better)
Translates to: CSFKETTVATYPFTYTMASAVIP*PLSVNV
Trigger: GACATTCACTGATAATGGCAACGGGATGACAGCAGA...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGCGCATAGAACCTGACTaGAAGCCATTCCCGTACAAT +
Preference number: 5 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMRIEPD*KPFPYN
Trigger: ATTGTACGGGAATGGCTTCAAGTCAGGTTCTATGCG...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTGACAATTAGCAATCTTACCACAAGAAAAAGCCAGGCAAACTCAGCTAGCTTTCAACACCCATGTTGTTaGCCTTTAACTGACATCCTA +
Preference number: 5 (lower is better)
Translates to: LTISNLTTRKSQANSASFQHPCC*PLTDIL
Trigger: TAGGATGTCAGTTAAAGGCAAACAACATGGGTGTTG...AAAGCTAGCTGAGTTTGCCTGGCTTTTTCTTGTGGTAAGATTGCTAATTGTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTACCATTCATGGTGACTTaGTCACTGAAGCCAAAGCTT +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVPFMVT*SLKPKL
Trigger: AAGCTTTGGCTTCAGTGACAAAGTCACCATGAATGG...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTAGAGAATGTTCCAGAATaGCTGCTAGGCTTGCTTTTG +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVENVPE*LLGLLL
Trigger: CAAAAGCAAGCCTAGCAGCAATTCTGGAACATTCTC...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCAATTCTTTCTTGTTTCTaGTACCCTTTCCTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: CSFKETTVATYPFTYTMAILSCF*YPFLPA
Trigger: TGCAGGGAGGAAAGGGTACAAGAAACAAGAAAGAAT...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCACAACACCCATGTTGTTaGCCTTTAACTGACATCCTA +
Preference number: 5 (lower is better)
Translates to: CSFKETTVATYPFTYTMAQHPCC*PLTDIL
Trigger: TAGGATGTCAGTTAAAGGCAAACAACATGGGTGTTG...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp GAAATCTCAAATAATTATTGCACCCACTTCATGCTGAATCAACAGCCAAAAATGTCTGACTTGAAACACTaGTCTGATACAATAGCTCAG +
Preference number: 5 (lower is better)
Translates to: EISNNYCTHFMLNQQPKMSDLKH*SDTIAQ
Trigger: CTGAGCTATTGTATCAGACAAGTGTTTCAAGTCAGA...CATTTTTGGCTGTTGATTCAGCATGAAGTGGGTGCAATAATTATTTGAGATTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTATCTGACTTGAAACACTaGTCTGATACAATAGCTCAG +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVSDLKH*SDTIAQ
Trigger: CTGAGCTATTGTATCAGACAAGTGTTTCAAGTCAGA...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTAGAATTGCTGCTAGGCTaGCTTTTGATTCTGTTAAAT +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVELLLG*LLILLN
Trigger: ATTTAACAGAATCAAAAGCAAGCCTAGCAGCAATTC...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TGCTCATTTAAGGAAACAACAGTAGCAACTTATCCATTTACATACACTATGGCATCTTTGCATTCAGAATaGATGAGTGAACACCAAGTT +
Preference number: 5 (lower is better)
Translates to: CSFKETTVATYPFTYTMASLHSE*MSEHQV
Trigger: AACTTGGTGTTCACTCATCAATTCTGAATGCAAAGA...TGCCATAGTGTATGTAAATGGATAAGTTGCTACTGTTGTTTCCTTAAATGAGCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTATTAATCTCCGAGTCTTaGCATTCAGAATTGATGAGT +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVLISES*HSELMS
Trigger: ACTCATCAATTCTGAATGCAAAGACTCGGAGATTAA...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS-3UTR CAA 90 bp TTCAACTTCGTATACAACAGATGTGTAGTTAACCACACACACAATGAGTATGTATGGCTCTGTTCTGACTaGACTTCAATATCTGATTTA +
Preference number: 5 (lower is better)
Translates to: FNFVYNRCVVNHTHNEYVWLCSD*TSISDL
Trigger: TAAATCAGATATTGAAGTCAAGTCAGAACAGAGCCA...TACATACTCATTGTGTGTGTGGTTAACTACACATCTGTTGTATACGAAGTTGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp GGCATCTACCGACTCAGCCGAGGTCTCCTGCACTTTTaGCTCAGTACCGACACAGGACAGGGTGGCTGTGCC +
Preference number: 6 (lower is better)
Translates to: GIYRLSRGLLHF*LSTDTGQGGCA
Trigger: GGCACAGCCACCCTGTCCTGTGTCGGTACTGAGGCAAAAGTGCAGGAGACCTCGGCTGAGTCGGTAGATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 72 bp GCATTGCTTGCAGTGGACCCATCGGCCGCTGCCTGTTaGCCTGTGGACTTCAGCTGCTCCACTTCAGTCTGC +
Preference number: 6 (lower is better)
Translates to: ALLAVDPSAAAC*PVDFSCSTSVC
Trigger: GCAGACTGAAGTGGAGCAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGATGGGTCCACTGCAAGCAATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp GCACGGCCATCTCGTCCACCTCGCTTTTGCTCTCAGTaGAGGAAGCCTGGCTGCACTCACTCTTCACCTGCT +
Preference number: 6 (lower is better)
Translates to: ARPSRPPRFCSQ*RKPGCTHSSPA
Trigger: AGCAGGTGAAGAGTGAGTGCAGCCAGGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACGAGATGGCCGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 72 bp TTGCAGTGGACCCATCGGCCGCTGCCTGTTGGCCTGTaGACTTCAGCTGCTCCACTTCAGTCTGCAGCTCTT +
Preference number: 6 (lower is better)
Translates to: LQWTHRPLPVGL*TSAAPLQSAAL
Trigger: AAGAGCTGCAGACTGAAGTGGAGCAGCTGAAGTCCACAGGCCAACAGGCAGCGGCCGATGGGTCCACTGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp TGGCATCTACCGACTCAGCCGAGGTCTCCTGCACTTTaGCCTCAGTACCGACACAGGACAGGGTGGCTGTGC +
Preference number: 6 (lower is better)
Translates to: WHLPTQPRSPAL*PQYRHRTGWLC
Trigger: GCACAGCCACCCTGTCCTGTGTCGGTACTGAGGCAAAAGTGCAGGAGACCTCGGCTGAGTCGGTAGATGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp CATCAAGCTGCACGGCCATCTCGTCCACCTCGCTTTTaGTCTCAGTGCAGGAAGCCTGGCTGCACTCACTCT +
Preference number: 6 (lower is better)
Translates to: HQAARPSRPPRF*SQCRKPGCTHS
Trigger: AGAGTGAGTGCAGCCAGGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACGAGATGGCCGTGCAGCTTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 72 bp GCCTGGTGCATCGGTCTGAGTGGAGACCGTAATGCCTaGGTCACTCCTGGAGGTGGAAGTGCTTGTGGAACT +
Preference number: 6 (lower is better)
Translates to: AWCIGLSGDRNA*VTPGGGSACGT
Trigger: AGTTCCACAAGCACTTCCACCTCCAGGAGTGACCCAGGCATTACGGTCTCCACTCAGACCGATGCACCAGGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp TCATCAAGCTGCACGGCCATCTCGTCCACCTCGCTTTaGCTCTCAGTGCAGGAAGCCTGGCTGCACTCACTC +
Preference number: 6 (lower is better)
Translates to: SSSCTAISSTSL*LSVQEAWLHSL
Trigger: GAGTGAGTGCAGCCAGGCTTCCTGCACTGAGAGCAAAAGCGAGGTGGACGAGATGGCCGTGCAGCTTGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 72 bp ACTGGTCCCTCTCAATGGTGCACTTGTCCAGCTGCCTaGACACATCATCAAGCTGCACGGCCATCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: TGPSQWCTCPAA*THHQAARPSRP
Trigger: TGGACGAGATGGCCGTGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp GCTGCACTGTCTCTTCAGCCTTTCTATCTCCTGCAGTaGTTGCTGGTACTGAGACCCCAAGTGGTCCAGGCT +
Preference number: 6 (lower is better)
Translates to: AALSLQPFYLLQ*LLVLRPQVVQA
Trigger: AGCCTGGACCACTTGGGGTCTCAGTACCAGCAAGCACTGCAGGAGATAGAAAGGCTGAAGAGACAGTGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp GCACTGTCTCTTCAGCCTTTCTATCTCCTGCAGTGCTaGCTGGTACTGAGACCCCAAGTGGTCCAGGCTCTC +
Preference number: 6 (lower is better)
Translates to: ALSLQPFYLLQC*LVLRPQVVQAL
Trigger: GAGAGCCTGGACCACTTGGGGTCTCAGTACCAGCAAGCACTGCAGGAGATAGAAAGGCTGAAGAGACAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp CTTTTGCCTCAGTACCGACACAGGACAGGGTGGCTGTaGCGTTCCTCACACCCATGTCCTCTTCCATACTTT +
Preference number: 6 (lower is better)
Translates to: LLPQYRHRTGWL*RSSHPCPLPYF
Trigger: AAAGTATGGAAGAGGACATGGGTGTGAGGAACGGCACAGCCACCCTGTCCTGTGTCGGTACTGAGGCAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp TTGTACTGGTCCCTCTCAATGGTGCACTTGTCCAGCTaGCTGAACACATCATCAAGCTGCACGGCCATCTCG +
Preference number: 6 (lower is better)
Translates to: LYWSLSMVHLSS*LNTSSSCTAIS
Trigger: CGAGATGGCCGTGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGTACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS GCA 72 bp TTCCATACTTTCTTCCTTTTTCACGGTCAGGCCTGGTaGATCGGTCTGAGTGGAGACCGTAATGCCTGGGTC +
Preference number: 6 (lower is better)
Translates to: FHTFFLFHGQAW*IGLSGDRNAWV
Trigger: GACCCAGGCATTACGGTCTCCACTCAGACCGATGCACCAGGCCTGACCGTGAAAAAGGAAGAAAGTATGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CCA 72 bp CTCTTCCATACTTTCTTCCTTTTTCACGGTCAGGCCTaGTGCATCGGTCTGAGTGGAGACCGTAATGCCTGG +
Preference number: 6 (lower is better)
Translates to: LFHTFFLFHGQA*CIGLSGDRNAW
Trigger: CCAGGCATTACGGTCTCCACTCAGACCGATGCACCAGGCCTGACCGTGAAAAAGGAAGAAAGTATGGAAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp ACCTCGTTCTTGTACTGGTCCCTCTCAATGGTGCACTaGTCCAGCTGCCTGAACACATCATCAAGCTGCACG +
Preference number: 6 (lower is better)
Translates to: TSFLYWSLSMVH*SSCLNTSSSCT
Trigger: CGTGCAGCTTGATGATGTGTTCAGGCAGCTGGACAAGTGCACCATTGAGAGGGACCAGTACAAGAACGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp AGATCAGGCACGATCATAGCCAGCAGCTGTCCTACGTaGACTCGAAGAGAACGAAGTTTGAGGCTTTCCCCG +
Preference number: 6 (lower is better)
Translates to: RSGTIIASSCPT*TRRERSLRLSP
Trigger: CGGGGAAAGCCTCAAACTTCGTTCTCTTCGAGTCAACGTAGGACAGCTGCTGGCTATGATCGTGCCTGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 72 bp TGGACACAAGGCTTAGGACTGCTTACAAGGTCAACATaGATGCCGCTCTGCTCAGTGTGGCTCTGTTCTGAC +
Preference number: 6 (lower is better)
Translates to: WTQGLGLLTRST*MPLCSVWLCSD
Trigger: GTCAGAACAGAGCCACACTGAGCAGAGCGGCATTCATGTTGACCTTGTAAGCAGTCCTAAGCCTTGTGTCCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp TCAGTAGACTGGTGGCACTTCTCCTTCTTCACGCACTaGTCGTTCATCTCCAATAGTCTTTGCTGTAACACC +
Preference number: 6 (lower is better)
Translates to: SVDWWHFSFFTH*SFISNSLCCNT
Trigger: GGTGTTACAGCAAAGACTATTGGAGATGAACGACAAGTGCGTGAAGAAGGAGAAGTGCCACCAGTCTACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS TCA 72 bp TCAGGGTTATTGGAGCAATACCATTTTTCTGGAAGCTaGTCTATCCCATCTGGTAACTTTCGCCACTTTAGA +
Preference number: 6 (lower is better)
Translates to: SGLLEQYHFSGS*SIPSGNFRHFR
Trigger: TCTAAAGTGGCGAAAGTTACCAGATGGGATAGATCAGCTTCCAGAAAAATGGTATTGCTCCAATAACCCTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044068.10
ENSMUST00000201097.3
ENSMUST00000202261.5
CDS TCA 72 bp TTCAGTCTGCAGCTCTTCACACTGAGAATGAATGTGTaGCTTCTCTATTTCCAACAACTGAACCTCGTTCTT +
Preference number: 6 (lower is better)
Translates to: FSLQLFTLRMNV*LLYFQQLNLVL
Trigger: AAGAACGAGGTTCAGTTGTTGGAAATAGAGAAGTCACACATTCATTCTCAGTGTGAAGAGCTGCAGACTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 90 bp AAGCCAAAGCTTAGCATTTTATGTAACTTATCTGCTGTCATCCCGTaGCCATTATCAGTGAATGTCAAGCATATATGGTCACTAATCACT +
Preference number: 6 (lower is better)
Translates to: KPKLSILCNLSAVIP*PLSVNVKHIWSLIT
Trigger: AGTGATTAGTGACCATATATGCTTGACATTCACTGATAATGGCAACGGGATGACAGCAGATAAGTTACATAAAATGCTAAGCTTTGGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044068.10
ENSMUST00000202261.5
CDS CAA 72 bp CTTAGCATTTTATGTAACTTATCTGCTGTCATCCCGTaGCCATTATCAGTGAATGTCAAGCATATATGGTCA +
Preference number: 6 (lower is better)
Translates to: LSILCNLSAVIP*PLSVNVKHIWS
Trigger: TGACCATATATGCTTGACATTCACTGATAATGGCAACGGGATGACAGCAGATAAGTTACATAAAATGCTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044068.10
ENSMUST00000201754.4
ENSMUST00000202261.5
CDS CAA 90 bp TTCACATCTCTTAGCATTTTATGTAACTTATCTGCTGTCATCCCGTaGCCATTATCAGTGAATGTCAAGCATATATGGTCACTAATCACT +
Preference number: 6 (lower is better)
Translates to: FTSLSILCNLSAVIP*PLSVNVKHIWSLIT
Trigger: AGTGATTAGTGACCATATATGCTTGACATTCACTGATAATGGCAACGGGATGACAGCAGATAAGTTACATAAAATGCTAAGAGATGTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201754.4