RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MON1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078908

Ensembl transcript IDs: ENSMUST00000035777.10, ENSMUST00000179926.9

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCACTCTTCTCCCATTTGTGGGCAAACCCTGACATCTTGCCCACCTaGCCAGGGAGACGGGGACCAGCTCTGCACAGACCTCTACCCACA +
Preference number: 1 (lower is better)
Translates to: SLFSHLWANPDILPT*PGRRGPALHRPLPT
Trigger: TGTGGGTAGAGGTCTGTGCAGAGCTGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 90 bp TGGAATCTGAGTGAACAGGTCTGGCAAGATGCCACCTCCCCTGTTTaGCCATGTAGTGACGGGCTGGGTGTGCAGGAAGGGGAGGTGGAG +
Preference number: 1 (lower is better)
Translates to: WNLSEQVWQDATSPV*PCSDGLGVQEGEVE
Trigger: CTCCACCTCCCCTTCCTGCACACCCAGCCCGTCACTACATGGCCAAACAGGGGAGGTGGCATCTTGCCAGACCTGTTCACTCAGATTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR GCA 90 bp ATGGAGGTGCATGAGGGGGCTCAGAGAGCAACCTGTGCCTCTGGCTaGTGTCACTCTTCTCCCATTTGTGGGCAAACCCTGACATCTTGC +
Preference number: 1 (lower is better)
Translates to: MEVHEGAQRATCASG*CHSSPICGQTLTSC
Trigger: GCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGCCCCCTCATGCACCTCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR GCA 90 bp TTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTaGTTGGAAGATGGACATGGTAGCAACCTGGGCTGCTTAGAAGAG +
Preference number: 1 (lower is better)
Translates to: LPTPTLRRASAQSQV*LEDGHGSNLGCLEE
Trigger: CTCTTCTAAGCAGCCCAGGTTGCTACCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 90 bp TCTGGCAAGATGCCACCTCCCCTGTTTGGCCATGTAGTGACGGGCTaGGTGTGCAGGAAGGGGAGGTGGAGACAGATACAAGGACAAAGA +
Preference number: 1 (lower is better)
Translates to: SGKMPPPLFGHVVTG*VCRKGRWRQIQGQR
Trigger: TCTTTGTCCTTGTATCTGTCTCCACCTCCCCTTCCTGCACACCCAGCCCGTCACTACATGGCCAAACAGGGGAGGTGGCATCTTGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR TCA 90 bp TGCATTCCAAATTCTAGAGCCCTTGTGGGTTACCCACCCCTACCCTaGGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGAC +
Preference number: 1 (lower is better)
Translates to: CIPNSRALVGYPPLP*GEPQPSLRSAWKMD
Trigger: GTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCACAAGGGCTCTAGAATTTGGAATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 90 bp TGTGATGACCTAGCATGGAGATTGCAGATGTGGAACAGCATCTGCTaGAAACCGCAAGCCCCTACCAGAAGGCCACTGGGGCTGCAGAGC +
Preference number: 1 (lower is better)
Translates to: CDDLAWRLQMWNSIC*KPQAPTRRPLGLQS
Trigger: GCTCTGCAGCCCCAGTGGCCTTCTGGTAGGGGCTTGCGGTTTTCAGCAGATGCTGTTCCACATCTGCAATCTCCATGCTAGGTCATCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR GCA 90 bp CAGTCTCAGGTCTGCTTGGAAGATGGACATGGTAGCAACCTGGGCTaGTTAGAAGAGGCTTGGTGGAGACAGCTGGTGACGGAGGGTACA +
Preference number: 1 (lower is better)
Translates to: QSQVCLEDGHGSNLG*LEEAWWRQLVTEGT
Trigger: TGTACCCTCCGTCACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCCATCTTCCAAGCAGACCTGAGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 90 bp TTTCAAGCACAGGCTAGCCCTGCATTCCAAATTCTAGAGCCCTTGTaGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCA +
Preference number: 1 (lower is better)
Translates to: FQAQASPAFQILEPL*VTHPYPEESLSPVS
Trigger: TGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCACAAGGGCTCTAGAATTTGGAATGCAGGGCTAGCCTGTGCTTGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 90 bp GGGTGTGCAGGAAGGGGAGGTGGAGACAGATACAAGGACAAAGATTaGACACCCGTTGAAGCAGGGTCAGGGTCCTTGGTCACACTATTT +
Preference number: 1 (lower is better)
Translates to: GCAGRGGGDRYKDKD*TPVEAGSGSLVTLF
Trigger: AAATAGTGTGACCAAGGACCCTGACCCTGCTTCAACGGGTGTTCAATCTTTGTCCTTGTATCTGTCTCCACCTCCCCTTCCTGCACACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CCA 90 bp TTCACAAAGCTGCATCCCGGCCCAAGGATGAAGTCAGGTGGATGCTaGAGGCCACCTTCTTATTCGTGTAAGAAACAGCCCAACATGGTG +
Preference number: 1 (lower is better)
Translates to: FTKLHPGPRMKSGGC*RPPSYSCKKQPNMV
Trigger: CACCATGTTGGGCTGTTTCTTACACGAATAAGAAGGTGGCCTCCAGCATCCACCTGACTTCATCCTTGGGCCGGGATGCAGCTTTGTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR GCA 90 bp ATCTTCACAAAGCTGCATCCCGGCCCAAGGATGAAGTCAGGTGGATaGTGGAGGCCACCTTCTTATTCGTGTAAGAAACAGCCCAACATG +
Preference number: 1 (lower is better)
Translates to: IFTKLHPGPRMKSGG*WRPPSYSCKKQPNM
Trigger: CATGTTGGGCTGTTTCTTACACGAATAAGAAGGTGGCCTCCAGCATCCACCTGACTTCATCCTTGGGCCGGGATGCAGCTTTGTGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAAACACCCAGGCTaGTTTCAAGCACAGGCTAGCCCTGCATTCCAAATTCTAGAGCCC +
Preference number: 1 (lower is better)
Translates to: CVCVCVCVCVFKHPG*FQAQASPAFQILEP
Trigger: GGGCTCTAGAATTTGGAATGCAGGGCTAGCCTGTGCTTGAAACCAGCCTGGGTGTTTGAACACACACACACACACACACACACACACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 90 bp ACTGTGGGTCTTGCTCTTGAAGGTCACATTCATTGTTTTGGAATCTaGGTGAACAGGTCTGGCAAGATGCCACCTCCCCTGTTTGGCCAT +
Preference number: 1 (lower is better)
Translates to: TVGLALEGHIHCFGI*VNRSGKMPPPLFGH
Trigger: ATGGCCAAACAGGGGAGGTGGCATCTTGCCAGACCTGTTCACTCAGATTCCAAAACAATGAATGTGACCTTCAAGAGCAAGACCCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CCA 90 bp ACAAGGACAAAGATTGAACACCCGTTGAAGCAGGGTCAGGGTCCTTaGTCACACTATTTTCTCTACTTTAGAATGGTTAGAAATTTTCTA +
Preference number: 1 (lower is better)
Translates to: TRTKIEHPLKQGQGP*SHYFLYFRMVRNFL
Trigger: TAGAAAATTTCTAACCATTCTAAAGTAGAGAAAATAGTGTGACCAAGGACCCTGACCCTGCTTCAACGGGTGTTCAATCTTTGTCCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CCA 90 bp AAAAATCTACAATCTGCATGGATATACCTAGATTTGGTCAGGTTTTaGATTCAATTCTTCTCTCTCTGCCTGTTAGTAACACACCACTGG +
Preference number: 1 (lower is better)
Translates to: KNLQSAWIYLDLVRF*IQFFSLCLLVTHHW
Trigger: CCAGTGGTGTGTTACTAACAGGCAGAGAGAGAAGAATTGAATCCAAAACCTGACCAAATCTAGGTATATCCATGCAGATTGTAGATTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR GCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGGACATCTTGCCCACCTaGCCAGGGAGACGGGGACCA +
Preference number: 2 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVDILPT*PGRRGP
Trigger: TGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTC...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGGGCGGCACAGGTGTCTaGTTGGAGCAAGCGCAGAAC +
Preference number: 2 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVGGTGV*LEQAQN
Trigger: GTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGGACATCTTGCCCACCTaGCCAGGGAGACGGGGACCA +
Preference number: 2 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWDILPT*PGRRGP
Trigger: TGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTC...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 90 bp TCAGAGAGCAACCTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTaGTGGGCAAACCCTGACATCTTGCCCACCTGCCCAGGGAGACGG +
Preference number: 2 (lower is better)
Translates to: SESNLCLWLLSLFSH*WANPDILPTCPGRR
Trigger: CCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 90 bp CCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTaGGAAGATGGACATGGTAGCAACCTGGGCTGCTTAGAAGAGGCT +
Preference number: 2 (lower is better)
Translates to: PTPTLRRASAQSQVC*EDGHGSNLGCLEEA
Trigger: AGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp GCTCAGAGAGCAACCTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTTGTGGGGACGGGGACCAGCTCTaGACAGACCTCTACCCACAT +
Preference number: 2 (lower is better)
Translates to: AQRATCASGCCHSSPICGDGDQL*TDLYPH
Trigger: ATGTGGGTAGAGGTCTGTGCAGAGCTGGTCCCCGTC...CCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGGACGGGGACCAGCTCTaGACAGACCTCTACCCACAT +
Preference number: 2 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWDGDQL*TDLYPH
Trigger: ATGTGGGTAGAGGTCTGTGCAGAGCTGGTCCCCGTC...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp GGACATGGTAGCAACCTGGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGTCAGAGAGCAACCTGTaGCTCTGGCTGCTGTCACTC +
Preference number: 2 (lower is better)
Translates to: GHGSNLGCLEEAWWRQLVSESNL*LWLLSL
Trigger: GAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGA...CACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp GGGGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTTCAGAGAGCAACCTGTaGCTCTGGCTGCTGTCACTC +
Preference number: 2 (lower is better)
Translates to: GAAQVSAWSKRRTSANATSESNL*LWLLSL
Trigger: GAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGA...AGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR GCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGATGAAGTCAGGTGGATaGTGGAGGCCACCTTCTTAT +
Preference number: 2 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVMKSGG*WRPPSY
Trigger: ATAAGAAGGTGGCCTCCAGCATCCACCTGACTTCAT...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CCA 90 bp CACACCACTGGCCACCCCTGGTCCACGCTCGTGCAGTCTGTCTCCTGTGATGACAGTCTCAGGTCTGCTTaGAAGATGGACATGGTAGCA +
Preference number: 2 (lower is better)
Translates to: HTTGHPWSTLVQSVSCDDSLRSA*KMDMVA
Trigger: TGCTACCATGTCCATCTTCCAAGCAGACCTGAGACT...GTCATCACAGGAGACAGACTGCACGAGCGTGGACCAGGGGTGGCCAGTGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR TCA 90 bp GGGGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTAGGGATAGGGAAAAATaGTGGGGACGGAGGGAGCAT +
Preference number: 2 (lower is better)
Translates to: GAAQVSAWSKRRTSANATRDREK*WGRREH
Trigger: ATGCTCCCTCCGTCCCCATCATTTTTCCCTATCCCT...AGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CCA 90 bp TGGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTCTCTTCTCCCATTTGTaGGCAAACCCTGACATCTTG +
Preference number: 2 (lower is better)
Translates to: WVTHPYPEESLSPVSGLLLFSHL*ANPDIL
Trigger: CAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAG...AAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CCA 90 bp GGCAGGTGTTTCAGGTGCCCAGGGAAACTGTGGGTCTTGCTCTTGAAGGTCACATGCTTAGAAGAGGCTTaGTGGAGACAGCTGGTGACG +
Preference number: 2 (lower is better)
Translates to: GRCFRCPGKLWVLLLKVTCLEEA*WRQLVT
Trigger: CGTCACCAGCTGTCTCCACCAAGCCTCTTCTAAGCA...TGTGACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR CCA 90 bp GGACATGGTAGCAACCTGGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGCTCTTCTCCCATTTGTaGGCAAACCCTGACATCTTG +
Preference number: 2 (lower is better)
Translates to: GHGSNLGCLEEAWWRQLVLFSHL*ANPDIL
Trigger: CAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAG...CACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CCA 90 bp CCTGAATACTCCAGTGCACATTTCCCATTATACGGGGGCTCCAGGTACTGGCATTCCCATCTACCCTGTTaGCCTTCACTACCTCGGGTG +
Preference number: 2 (lower is better)
Translates to: PEYSSAHFPLYGGSRYWHSHLPC*PSLPRV
Trigger: CACCCGAGGTAGTGAAGGCCAACAGGGTAGATGGGA...ATGCCAGTACCTGGAGCCCCCGTATAATGGGAAATGTGCACTGGAGTATTCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR GCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGCAAACCCTGACATCTTaGCCACCTGCCCAGGGAGAC +
Preference number: 2 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMQTLTS*PPAQGD
Trigger: GTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTG...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR TCA 90 bp TGCAACTTGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACTCCATACCCACCCCTACCCTaGGGAGAGCCTCAGCCCAGT +
Preference number: 2 (lower is better)
Translates to: CNLSDFYSLKTDTRHVTPYPPLP*GEPQPS
Trigger: ACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTA...TGGAGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR GCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGGCCCAGTCTCAGGTCTaGTTGGAAGATGGACATGGT +
Preference number: 2 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMAQSQV*LEDGHG
Trigger: ACCATGTCCATCTTCCAAGCAGACCTGAGACTGGGC...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR TCA 90 bp CCTGAATACTCCAGTGCACATTTCCCATTATACGGGGGCTCCAGGTACTGGCATCTGACACCCGACATGTaGCTCCAATTTAAGACAAAT +
Preference number: 2 (lower is better)
Translates to: PEYSSAHFPLYGGSRYWHLTPDM*LQFKTN
Trigger: ATTTGTCTTAAATTGGAGTCACATGTCGGGTGTCAG...ATGCCAGTACCTGGAGCCCCCGTATAATGGGAAATGTGCACTGGAGTATTCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR CCA 90 bp TTTGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTGAACACTTGGGCAGCAGCAACCTGTGCCTCTaGCTGCTGTCACTCTTCTCC +
Preference number: 2 (lower is better)
Translates to: FVYRSPLKGSEESEHLGSSNLCL*LLSLFS
Trigger: GGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCT...GCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCAAGGATGAAGTCAGGTaGATGCTGGAGGCCACCTTC +
Preference number: 2 (lower is better)
Translates to: EEFERLKLNVYISAALYRKDEVR*MLEATF
Trigger: GAAGGTGGCCTCCAGCATCCACCTGACTTCATCCTT...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR GCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCGCCCAGTCTCAGGTCTaGTTGGAAGATGGACATGGT +
Preference number: 2 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPAQSQV*LEDGHG
Trigger: ACCATGTCCATCTTCCAAGCAGACCTGAGACTGGGC...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CCA 90 bp TGCAACTTGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACTCCAAGCAACCTGTGCCTCTaGCTGCTGTCACTCTTCTCC +
Preference number: 2 (lower is better)
Translates to: CNLSDFYSLKTDTRHVTPSNLCL*LLSLFS
Trigger: GGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCT...TGGAGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR CCA 90 bp AGGAATGTCTTGAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTTTCAAACACCCAGGCTaGTTTCAAGCACAGGCTAGC +
Preference number: 2 (lower is better)
Translates to: RNVLKVSALGPFCTVCVCFKHPG*FQAQAS
Trigger: GCTAGCCTGTGCTTGAAACCAGCCTGGGTGTTTGAA...ACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTCAAGACATTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 90 bp TTTACATCTCTGCGGCACTGTACCGCGTGGGTCATAAAATGCAACTaGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACT +
Preference number: 2 (lower is better)
Translates to: FTSLRHCTAWVIKCN*SDFYSLKTDTRHVT
Trigger: AGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCATTTTATGACCCACGCGGTACAGTGCCGCAGAGATGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR CAA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGGCAAACCCTGACATCTaGCCCACCTGCCCAGGGAGA +
Preference number: 3 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVANPDI*PTCPGR
Trigger: TCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGC...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 72 bp GCTGCTGTCACTCTTCTCCCATTTGTGGGCAAACCCTaGCATCTTGCCCACCTGCCCAGGGAGACGGGGACC +
Preference number: 3 (lower is better)
Translates to: AAVTLLPFVGKP*HLAHLPRETGT
Trigger: GGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGACAGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR GCA 72 bp CACTCTTCTCCCATTTGTGGGCAAACCCTGACATCTTaGCCACCTGCCCAGGGAGACGGGGACCAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: HSSPICGQTLTS*PPAQGDGDQLC
Trigger: GCAGAGCTGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR GCA 72 bp CCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTaGTTGGAAGATGGACATGGTAGCAACCTGGGCTGC +
Preference number: 3 (lower is better)
Translates to: PTLRRASAQSQV*LEDGHGSNLGC
Trigger: GCAGCCCAGGTTGCTACCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 72 bp CTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTTGTaGGCAAACCCTGACATCTTGCCCACCTGCCCAGGG +
Preference number: 3 (lower is better)
Translates to: LCLWLLSLFSHL*ANPDILPTCPG
Trigger: CCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CAA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGCAGTCTCAGGTCTGCTaGGAAGATGGACATGGTAGC +
Preference number: 3 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVQSQVC*EDGHGS
Trigger: GCTACCATGTCCATCTTCCAAGCAGACCTGAGACTG...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR GCA 72 bp CATGAGGGGGCTCAGAGAGCAACCTGTGCCTCTGGCTaGTGTCACTCTTCTCCCATTTGTGGGCAAACCCTG +
Preference number: 3 (lower is better)
Translates to: HEGAQRATCASG*CHSSPICGQTL
Trigger: CAGGGTTTGCCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGCCCCCTCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 72 bp CAGGCTAGCCCTGCATTCCAAATTCTAGAGCCCTTGTaGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGC +
Preference number: 3 (lower is better)
Translates to: QASPAFQILEPL*VTHPYPEESLS
Trigger: GCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCACAAGGGCTCTAGAATTTGGAATGCAGGGCTAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 72 bp ATGCCACCTCCCCTGTTTGGCCATGTAGTGACGGGCTaGGTGTGCAGGAAGGGGAGGTGGAGACAGATACAA +
Preference number: 3 (lower is better)
Translates to: MPPPLFGHVVTG*VCRKGRWRQIQ
Trigger: TTGTATCTGTCTCCACCTCCCCTTCCTGCACACCCAGCCCGTCACTACATGGCCAAACAGGGGAGGTGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR GCA 72 bp GTCACTGAGTGCCAAGCACCAGGCAGGTGTTTCAGGTaGCCAGGGAAACTGTGGGTCTTGCTCTTGAAGGTC +
Preference number: 3 (lower is better)
Translates to: VTECQAPGRCFR*PGKLWVLLLKV
Trigger: GACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCCTGGTGCTTGGCACTCAGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR TCA 72 bp CTAGCATGGAGATTGCAGATGTGGAACAGCATCTGCTaGAAACCGCAAGCCCCTACCAGAAGGCCACTGGGG +
Preference number: 3 (lower is better)
Translates to: LAWRLQMWNSIC*KPQAPTRRPLG
Trigger: CCCCAGTGGCCTTCTGGTAGGGGCTTGCGGTTTTCAGCAGATGCTGTTCCACATCTGCAATCTCCATGCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CCA 72 bp CAATTCTTCTCTCTCTGCCTGTTAGTAACACACCACTaGCCACCCCTGGTCCACGCTCGTGCAGTCTGTCTC +
Preference number: 3 (lower is better)
Translates to: QFFSLCLLVTHH*PPLVHARAVCL
Trigger: GAGACAGACTGCACGAGCGTGGACCAGGGGTGGCCAGTGGTGTGTTACTAACAGGCAGAGAGAGAAGAATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR CAA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCTCACTCTTCTCCCATTaGTGGGCAAACCCTGACATC +
Preference number: 3 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCSLFSH*WANPDI
Trigger: GATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGA...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CAA 90 bp GAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTGTGTGTGTGTGGCAAACCCTGACATCTaGCCCACCTGCCCAGGGAGA +
Preference number: 3 (lower is better)
Translates to: EGFSFRPFLYSVCVCVCVANPDI*PTCPGR
Trigger: TCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGC...CACACACACACACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 72 bp AGAGCATCTTCACAAAGCTGCATCCCGGCCCAAGGATaGAGTCAGGTGGATGCTGGAGGCCACCTTCTTATT +
Preference number: 3 (lower is better)
Translates to: RASSQSCIPAQG*SQVDAGGHLLI
Trigger: AATAAGAAGGTGGCCTCCAGCATCCACCTGACTTCATCCTTGGGCCGGGATGCAGCTTTGTGAAGATGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 72 bp CCCGAGAAACCCAAAAGTAGTGATGTAGGCTGGCTGTaGAGTGACCGAGAAGATCCTTCCCTCAGCTGTGCA +
Preference number: 3 (lower is better)
Translates to: PEKPKSSDVGWL*SDREDPSLSCA
Trigger: TGCACAGCTGAGGGAAGGATCTTCTCGGTCACTTCACAGCCAGCCTACATCACTACTTTTGGGTTTCTCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR GCA 72 bp AAGCTGCATCCCGGCCCAAGGATGAAGTCAGGTGGATaGTGGAGGCCACCTTCTTATTCGTGTAAGAAACAG +
Preference number: 3 (lower is better)
Translates to: KLHPGPRMKSGG*WRPPSYSCKKQ
Trigger: CTGTTTCTTACACGAATAAGAAGGTGGCCTCCAGCATCCACCTGACTTCATCCTTGGGCCGGGATGCAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CAA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGGGCACAGGTGTCTGCTaGGAGCAAGCGCAGAACATC +
Preference number: 3 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMGTGVC*EQAQNI
Trigger: GATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCC...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 72 bp GTGTGTGTGTGTGTGTGTGTGTTCAAACACCCAGGCTaGTTTCAAGCACAGGCTAGCCCTGCATTCCAAATT +
Preference number: 3 (lower is better)
Translates to: VCVCVCVFKHPG*FQAQASPAFQI
Trigger: AATTTGGAATGCAGGGCTAGCCTGTGCTTGAAACCAGCCTGGGTGTTTGAACACACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CAA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCCTGCTTAGAAGAGGCTaGGTGGAGACAGCTGGTGAC +
Preference number: 3 (lower is better)
Translates to: EEFERLKLNVYISAALYRLLRRG*VETAGD
Trigger: GTCACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAG...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR GCA 72 bp GATTTGGTCAGGTTTTGGATTCAATTCTTCTCTCTCTaGCTGTTAGTAACACACCACTGGCCACCCCTGGTC +
Preference number: 3 (lower is better)
Translates to: DLVRFWIQFFSL*LLVTHHWPPLV
Trigger: GACCAGGGGTGGCCAGTGGTGTGTTACTAACAGGCAGAGAGAGAAGAATTGAATCCAAAACCTGACCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR-3UTR CAA 90 bp AGGAATGTCTTGAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTCAAATTCTAGAGCCCTaGTGGGTTACCCACCCCTAC +
Preference number: 3 (lower is better)
Translates to: RNVLKVSALGPFCTVCVCQILEP*WVTHPY
Trigger: GTAGGGGTGGGTAACCCACAAGGGCTCTAGAATTTG...ACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTCAAGACATTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR-3UTR CAA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGGAACAGAGGAATGTCTaGAAGGTTTCAGCTTTAGGC +
Preference number: 3 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMEQRNV*KVSALG
Trigger: GCCTAAAGCTGAAACCTTCAAGACATTCCTCTGTTC...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR TCA 72 bp TGGAGACAGATACAAGGACAAAGATTGAACACCCGTTaGAGCAGGGTCAGGGTCCTTGGTCACACTATTTTC +
Preference number: 3 (lower is better)
Translates to: WRQIQGQRLNTR*SRVRVLGHTIF
Trigger: GAAAATAGTGTGACCAAGGACCCTGACCCTGCTTCAACGGGTGTTCAATCTTTGTCCTTGTATCTGTCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CCA 72 bp TCACATTCATTGTTTTGGAATCTGAGTGAACAGGTCTaGCAAGATGCCACCTCCCCTGTTTGGCCATGTAGT +
Preference number: 3 (lower is better)
Translates to: SHSLFWNLSEQV*QDATSPVWPCS
Trigger: ACTACATGGCCAAACAGGGGAGGTGGCATCTTGCCAGACCTGTTCACTCAGATTCCAAAACAATGAATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR TCA 72 bp TGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTaGACACTTGGGCAGCTAAGAGCATCTTCACAAAGC +
Preference number: 3 (lower is better)
Translates to: CLQVSTKRFRRK*TLGQLRASSQS
Trigger: GCTTTGTGAAGATGCTCTTAGCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CCA 72 bp AAGATTGAACACCCGTTGAAGCAGGGTCAGGGTCCTTaGTCACACTATTTTCTCTACTTTAGAATGGTTAGA +
Preference number: 3 (lower is better)
Translates to: KIEHPLKQGQGP*SHYFLYFRMVR
Trigger: TCTAACCATTCTAAAGTAGAGAAAATAGTGTGACCAAGGACCCTGACCCTGCTTCAACGGGTGTTCAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CCA 72 bp CAATCTGCATGGATATACCTAGATTTGGTCAGGTTTTaGATTCAATTCTTCTCTCTCTGCCTGTTAGTAACA +
Preference number: 3 (lower is better)
Translates to: QSAWIYLDLVRF*IQFFSLCLLVT
Trigger: TGTTACTAACAGGCAGAGAGAGAAGAATTGAATCCAAAACCTGACCAAATCTAGGTATATCCATGCAGATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR GCA 90 bp CACACCACTGGCCACCCCTGGTCCACGCTCGTGCAGTCTGTCTCCTGTGATGACGCAGGGGCCGGGAGGTaGTGTGGAGGCGAGCATGCA +
Preference number: 4 (lower is better)
Translates to: HTTGHPWSTLVQSVSCDDAGAGR*CGGEHA
Trigger: TGCATGCTCGCCTCCACAGCACCTCCCGGCCCCTGC...GTCATCACAGGAGACAGACTGCACGAGCGTGGACCAGGGGTGGCCAGTGGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGGCCGGCAGGCGGCCATaGCATGGAAGGCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVAGRRP*HGRLHG
Trigger: ACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGC...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGCTGCACACTGTAGGCTaGGGCACTGGCTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVLHTVG*GTGCWA
Trigger: GGCCCAGCAGCCAGTGCCCCAGCCTACAGTGTGCAG...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp CACACCACTGGCCACCCCTGGTCCACGCTCGTGCAGTCTGTCTCCTGTGATGACGCACACAGGTGCCCATaGTTCACCTGCCGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: HTTGHPWSTLVQSVSCDDAHRCP*FTCREG
Trigger: GCCTTCGCGGCAGGTGAAGCATGGGCACCTGTGTGC...GTCATCACAGGAGACAGACTGCACGAGCGTGGACCAGGGGTGGCCAGTGGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp GGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGACGGAGGGTACAGTGGCCACGCCCCCGGGGGCTaGGACAGCATTATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GLLRRGLVETAGDGGYSGHAPGG*DSIISS
Trigger: GGAGGAGATAATGCTGTCCCAGCCCCCGGGGGCGTG...GCCACTGTACCCTCCGTCACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCGGCCGGGAGGTGCTGTaGAGGCGAGCATGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCGREVL*RRACRR
Trigger: CCGCCTGCATGCTCGCCTCCACAGCACCTCCCGGCC...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GGGGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGGCCGGGAGGTGCTGTaGAGGCGAGCATGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: GAAQVSAWSKRRTSANATGREVL*RRACRR
Trigger: CCGCCTGCATGCTCGCCTCCACAGCACCTCCCGGCC...AGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCGTCCAGTGTGCGCTCTaGGCCGGCCAACAGGCGACG +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCVQCAL*AGQQAT
Trigger: CGTCGCCTGTTGGCCGGCTCAGAGCGCACACTGGAC...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGCAGCCACGTGGTAAATaGGGCGCAGGGGCCGGGAGG +
Preference number: 4 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWQPRGK*GAGAGR
Trigger: CCTCCCGGCCCCTGCGCCTCATTTACCACGTGGCTG...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TGGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTTGCCGCGAAGGCTGGTaGACCCACCCAGTCAAGCAG +
Preference number: 4 (lower is better)
Translates to: WVTHPYPEESLSPVSGLLCREGW*THPVKQ
Trigger: CTGCTTGACTGGGTGGGTGCACCAGCCTTCGCGGCA...AAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCGCAGGGGCCGGGAGGTaGTGTGGAGGCGAGCATGCA +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCAGAGR*CGGEHA
Trigger: TGCATGCTCGCCTCCACAGCACCTCCCGGCCCCTGC...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCAGGGCATCCCGCAGTaGACGGGCCAGAGGCACACA +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFQGIPQ*TGQRHT
Trigger: TGTGTGCCTCTGGCCCGTCCACTGCGGGATGCCCTG...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGGTCCGCCGAGGTGGATaGGGGTGTGGAGTATTTGGG +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVVRRGG*GCGVFG
Trigger: CCCAAATACTCCACACCCCCATCCACCTCGGCGGAC...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGCCTGGTCCGCCGAGGTaGATGGGGGTGTGGAGTATT +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVPGPPR*MGVWSI
Trigger: AATACTCCACACCCCCATCCACCTCGGCGGACCAGG...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp CACCCAGGCTGGTTTCAAGCACAGGCTAGCCCTGCATTCCAAATTCTAGAGCCCCAGCCACGTGGTAAATaGGGCGCAGGGGCCGGGAGG +
Preference number: 4 (lower is better)
Translates to: HPGWFQAQASPAFQILEPQPRGK*GAGAGR
Trigger: CCTCCCGGCCCCTGCGCCTCATTTACCACGTGGCTG...GGGCTCTAGAATTTGGAATGCAGGGCTAGCCTGTGCTTGAAACCAGCCTGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCCGTGCTTCCGCTGGCTaGGCCAGTCCTCGTCACTGG +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCRASAG*ASPRHW
Trigger: CCAGTGACGAGGACTGGCGCAGCCAGCGGAAGCACG...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TGGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGCTTATGTGCGAAGATaGGGGCCACGCTTGCACGCG +
Preference number: 4 (lower is better)
Translates to: WVTHPYPEESLSPVSGLLAYVRR*GPRLHA
Trigger: CGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGC...AAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTTGCCCATGCTTCACCTaGCGCGAAGGCTGGTGCACC +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFCPCFT*REGWCT
Trigger: GGTGCACCAGCCTTCGCGGCAGGTGAAGCATGGGCA...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp ACCCTGACATCTTGCCCACCTGCCCAGGGAGACGGGGACCAGCTCTGCACAGACCGTACCGTGAGTAGATaGGCTTGCCTGCCTCACTCA +
Preference number: 4 (lower is better)
Translates to: TLTSCPPAQGDGDQLCTDRTVSR*ACLPHS
Trigger: TGAGTGAGGCAGGCAAGCCCATCTACTCACGGTACG...GTCTGTGCAGAGCTGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTTCATCACCCCCATGGTaGCCGACAGTGCCTCCACGC +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFSSPPW*PTVPPR
Trigger: GCGTGGAGGCACTGTCGGCCACCATGGGGGTGATGA...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GCTCAGAGAGCAACCTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTTGTGGGCAGGGCATCCCGCAGTaGACGGGCCAGAGGCACACA +
Preference number: 4 (lower is better)
Translates to: AQRATCASGCCHSSPICGQGIPQ*TGQRHT
Trigger: TGTGTGCCTCTGGCCCGTCCACTGCGGGATGCCCTG...CCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGCAGGCGGCCATGGCATaGAAGGCTTCACGGTTGGTA +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVQAAMA*KASRLV
Trigger: TACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTG...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCACGCTACCGTACCGTaGGTAGATGGGCTTGCCTGC +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFHATVP*VDGLAC
Trigger: GCAGGCAAGCCCATCTACTCACGGTACGGTAGCGTG...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp ACCCTGACATCTTGCCCACCTGCCCAGGGAGACGGGGACCAGCTCTGCACAGACTGGTTACCAGGGGGCTaGGGCAAGTATAGAGCTCAA +
Preference number: 4 (lower is better)
Translates to: TLTSCPPAQGDGDQLCTDWLPGG*GKYRAQ
Trigger: TTGAGCTCTATACTTGCCTCAGCCCCCTGGTAACCA...GTCTGTGCAGAGCTGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TGGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTTCCTCTCTGGGGAACTaGGTGTCCACCAAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: WVTHPYPEESLSPVSGLLSSLGN*VSTKSS
Trigger: GGAGGACTTGGTGGACACGCAGTTCCCCAGAGAGGA...AAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGCAGGTGTTTCAGGTGCCCAGGGAAACTGTGGGTCTTGCTCTTGAAGGTCACACGTGCTTCCGCTGGCTaGGCCAGTCCTCGTCACTGG +
Preference number: 4 (lower is better)
Translates to: GRCFRCPGKLWVLLLKVTRASAG*ASPRHW
Trigger: CCAGTGACGAGGACTGGCGCAGCCAGCGGAAGCACG...TGTGACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR GCA 90 bp GGACATGGTAGCAACCTGGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGCTCAGCACGAACACGTaGTTCCGCTGGCTGCGCCAG +
Preference number: 4 (lower is better)
Translates to: GHGSNLGCLEEAWWRQLVLSTNT*FRWLRQ
Trigger: CTGGCGCAGCCAGCGGAAGCACGTGTTCGTGCTGAG...CACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGGGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCACACAGGTGCCCATaGTTCACCTGCCGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: GAAQVSAWSKRRTSANATAHRCP*FTCREG
Trigger: GCCTTCGCGGCAGGTGAAGCATGGGCACCTGTGTGC...AGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGAGGCAGGCACACAGGTaGCCATGCTTCACCTGCCGC +
Preference number: 4 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWRQAHR*PCFTCR
Trigger: GCGGCAGGTGAAGCATGGGCACCTGTGTGCCTGCCT...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGACCTGCCGCGAAGGCTaGTGCACCCACCCAGTCAAG +
Preference number: 4 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWTCREG*CTHPVK
Trigger: CTTGACTGGGTGGGTGCACCAGCCTTCGCGGCAGGT...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GCTCAGAGAGCAACCTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTTGTGGGGCAGGCAGACGGGCATaGAATCCAGGCGGGCCACAT +
Preference number: 4 (lower is better)
Translates to: AQRATCASGCCHSSPICGAGRRA*NPGGPH
Trigger: ATGTGGCCCGCCTGGATTCCATGCCCGTCTGCCTGC...CCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TGGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGGCTTCACGGTTaGTACCAAGCAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: WVTHPYPEESLSPVSGLLGRLHG*YQAAAG
Trigger: GCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCC...AAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GGCAGGTGTTTCAGGTGCCCAGGGAAACTGTGGGTCTTGCTCTTGAAGGTCACAGCCGGCAGGCGGCCATaGCATGGAAGGCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: GRCFRCPGKLWVLLLKVTAGRRP*HGRLHG
Trigger: ACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGC...TGTGACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGGGGACTGGTAAACTGTaGCAGCTGGCGGTGTTGTTC +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVGTGKL*QLAVLF
Trigger: GAACAACACCGCCAGCTGCCACAGTTTACCAGTCCC...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 72 bp TCACTCTTCTCCCATTTGTGGGCAAACCCTGACATCTaGCCCACCTGCCCAGGGAGACGGGGACCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SLFSHLWANPDI*PTCPGRRGPAL
Trigger: CAGAGCTGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGTTTGCCCACAAATGGGAGAAGAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCGAGCATGCAGGCGGTaGTACAAGTCTGACAGTCGC +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFRACRR*YKSDSR
Trigger: GCGACTGTCAGACTTGTATCACCGCCTGCATGCTCG...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp CTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTCCCAACGTGTGGTTACCAGGGGGCTaGGGCAAGTATAGAGCTCAA +
Preference number: 4 (lower is better)
Translates to: LPATPPSKAPAPQPFPNVWLPGG*GKYRAQ
Trigger: TTGAGCTCTATACTTGCCTCAGCCCCCTGGTAACCA...CACGTTGGGAAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TGGGTTACCCACCCCTACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGTAGATGGGCTTGCCTaGCTCACTCAGCACGAACAC +
Preference number: 4 (lower is better)
Translates to: WVTHPYPEESLSPVSGLLVDGLA*LTQHEH
Trigger: GTGTTCGTGCTGAGTGAGGCAGGCAAGCCCATCTAC...AAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTAGGGGTGGGTAACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGACGGAGGGTACAGTGGCACGGATGGCGTCTCCTaGACTCTGCACAAAGGACAC +
Preference number: 4 (lower is better)
Translates to: GLLRRGLVETAGDGGYSGTDGVS*TLHKGH
Trigger: GTGTCCTTTGTGCAGAGTGCAGGAGACGCCATCCGT...GCCACTGTACCCTCCGTCACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GGCAGGTGTTTCAGGTGCCCAGGGAAACTGTGGGTCTTGCTCTTGAAGGTCACATCATCACCCCCATGGTaGCCGACAGTGCCTCCACGC +
Preference number: 4 (lower is better)
Translates to: GRCFRCPGKLWVLLLKVTSSPPW*PTVPPR
Trigger: GCGTGGAGGCACTGTCGGCCACCATGGGGGTGATGA...TGTGACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp GGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGACGGAGGGTACAGTGGCGATCCTCAGCATAGATaGCACGGATGGCGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: GLLRRGLVETAGDGGYSGDPQHR*HGWRLL
Trigger: CAGGAGACGCCATCCGTGCCATCTATGCTGAGGATC...GCCACTGTACCCTCCGTCACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGAGCCACGAGCAGGAGTaGACCCTGCTGCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWSHEQE*TLLQEH
Trigger: GTGTTCCTGCAGCAGGGTCCACTCCTGCTCGTGGCT...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTTGGGGCACTGGCTGCTaGGCCATTAGAGAAGTTGGC +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFWGTGC*AIREVG
Trigger: GCCAACTTCTCTAATGGCCCAGCAGCCAGTGCCCCA...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGGGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTTCCTCTCTGGGGAACTaGGTGTCCACCAAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: GAAQVSAWSKRRTSANATSSLGN*VSTKSS
Trigger: GGAGGACTTGGTGGACACGCAGTTCCCCAGAGAGGA...AGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGCAGGTGTTTCAGGTGCCCAGGGAAACTGTGGGTCTTGCTCTTGAAGGTCACAGCTTATGTGCGAAGATaGGGGCCACGCTTGCACGCG +
Preference number: 4 (lower is better)
Translates to: GRCFRCPGKLWVLLLKVTAYVRR*GPRLHA
Trigger: CGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGC...TGTGACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR GCA 90 bp CAGAGGAAGTGTCCCACTTTCCTAAACATGGAGGTGCATGAGGGGGCTCAGAGATGCCCATGCTTCACCTaGCGCGAAGGCTGGTGCACC +
Preference number: 4 (lower is better)
Translates to: QRKCPTFLNMEVHEGAQRCPCFT*REGWCT
Trigger: GGTGCACCAGCCTTCGCGGCAGGTGAAGCATGGGCA...TCTCTGAGCCCCCTCATGCACCTCCATGTTTAGGAAAGTGGGACACTTCCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CCTGAATACTCCAGTGCACATTTCCCATTATACGGGGGCTCCAGGTACTGGCATCACGCCCCCGGGGGCTaGGACAGCATTATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PEYSSAHFPLYGGSRYWHHAPGG*DSIISS
Trigger: GGAGGAGATAATGCTGTCCCAGCCCCCGGGGGCGTG...ATGCCAGTACCTGGAGCCCCCGTATAATGGGAAATGTGCACTGGAGTATTCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp CACCCAGGCTGGTTTCAAGCACAGGCTAGCCCTGCATTCCAAATTCTAGAGCCCCTGTGCTGCAGACTGTaGAGTCCGGGACACAGCCAC +
Preference number: 4 (lower is better)
Translates to: HPGWFQAQASPAFQILEPLCCRL*SPGHSH
Trigger: GTGGCTGTGTCCCGGACTCCACAGTCTGCAGCACAG...GGGCTCTAGAATTTGGAATGCAGGGCTAGCCTGTGCTTGAAACCAGCCTGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp ACCCTGACATCTTGCCCACCTGCCCAGGGAGACGGGGACCAGCTCTGCACAGACAGTGTGCTCACAATTTaGGCGTGTACAGCAAGCAGT +
Preference number: 4 (lower is better)
Translates to: TLTSCPPAQGDGDQLCTDSVLTI*ACTASS
Trigger: ACTGCTTGCTGTACACGCCCAAATTGTGAGCACACT...GTCTGTGCAGAGCTGGTCCCCGTCTCCCTGGGCAGGTGGGCAAGATGTCAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTGGGACTGGTAAACTGTaGCAGCTGGCGGTGTTGTTC +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFGTGKL*QLAVLF
Trigger: GAACAACACCGCCAGCTGCCACAGTTTACCAGTCCC...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp CACCCAGGCTGGTTTCAAGCACAGGCTAGCCCTGCATTCCAAATTCTAGAGCCCGTCCGCCGAGGTGGATaGGGGTGTGGAGTATTTGGG +
Preference number: 4 (lower is better)
Translates to: HPGWFQAQASPAFQILEPVRRGG*GCGVFG
Trigger: CCCAAATACTCCACACCCCCATCCACCTCGGCGGAC...GGGCTCTAGAATTTGGAATGCAGGGCTAGCCTGTGCTTGAAACCAGCCTGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGACATGGTAGCAACCTGGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGGTAGATGGGCTTGCCTaGCTCACTCAGCACGAACAC +
Preference number: 4 (lower is better)
Translates to: GHGSNLGCLEEAWWRQLVVDGLA*LTQHEH
Trigger: GTGTTCGTGCTGAGTGAGGCAGGCAAGCCCATCTAC...CACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGGGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTACGGATGGCGTCTCCTaGACTCTGCACAAAGGACAC +
Preference number: 4 (lower is better)
Translates to: GAAQVSAWSKRRTSANATTDGVS*TLHKGH
Trigger: GTGTCCTTTGTGCAGAGTGCAGGAGACGCCATCCGT...AGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGGTCGCTCTTCCTCTCTaGTGTATGGGGCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWVALPL*CMGPLA
Trigger: AGCTAGAGGCCCCATACAGCAGAGAGGAAGAGCGAC...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 72 bp ACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTaGGAAGATGGACATGGTAGCAACCTGGGCTGCTTA +
Preference number: 4 (lower is better)
Translates to: TLRRASAQSQVC*EDGHGSNLGCL
Trigger: TAAGCAGCCCAGGTTGCTACCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCAGGTGGATGGGGGTGTaGAGTATTTGGGTGGGTAAC +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCRWMGV*SIWVGN
Trigger: GTTACCCACCCAAATACTCCACACCCCCATCCACCT...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp CCTGAATACTCCAGTGCACATTTCCCATTATACGGGGGCTCCAGGTACTGGCATCGAGCATGCAGGCGGTaGTACAAGTCTGACAGTCGC +
Preference number: 4 (lower is better)
Translates to: PEYSSAHFPLYGGSRYWHRACRR*YKSDSR
Trigger: GCGACTGTCAGACTTGTATCACCGCCTGCATGCTCG...ATGCCAGTACCTGGAGCCCCCGTATAATGGGAAATGTGCACTGGAGTATTCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR GCA 90 bp GCTCAGAGAGCAACCTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTTGTGGGATAGTTCTGCTTATGTaGGAAGATGCGGGCCACGCT +
Preference number: 4 (lower is better)
Translates to: AQRATCASGCCHSSPICGIVLLM*EDAGHA
Trigger: AGCGTGGCCCGCATCTTCGCACATAAGCAGAACTAT...CCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp CTTTCTCAGCTCCCAGCCACTCCGCCATCAAAGGCTCCAGCTCCGCAGCCATTTAGGGCACCAAGGTTGTaGATCCCATCTTCAACTAAG +
Preference number: 4 (lower is better)
Translates to: LSQLPATPPSKAPAPQPFRAPRL*IPSSTK
Trigger: CTTAGTTGAAGATGGGATGCACAACCTTGGTGCCCT...AAATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGGCAGGCAGACGGGCATaGAATCCAGGCGGGCCACAT +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMAGRRA*NPGGPH
Trigger: ATGTGGCCCGCCTGGATTCCATGCCCGTCTGCCTGC...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCAGGGCACCAAGGTTGTaGATCCCATCTTCAACTAAG +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCRAPRL*IPSSTK
Trigger: CTTAGTTGAAGATGGGATGCACAACCTTGGTGCCCT...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGCTCCAGCCTCCTCTCTaGGGAACTGCGTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMLQPPL*GTACPP
Trigger: TGGTGGACACGCAGTTCCCCAGAGAGGAGGCTGGAG...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTGTGTGTGTGTGCTGTCATCACCCCCATaGTGGCCGACAGTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: EGFSFRPFLYSVCVCVCVLSSPP*WPTVPP
Trigger: TGGAGGCACTGTCGGCCACCATGGGGGTGATGACAG...CACACACACACACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTGTGTGTGTGTGAGCCACGAGCAGGAGTaGACCCTGCTGCAGGAACAC +
Preference number: 4 (lower is better)
Translates to: EGFSFRPFLYSVCVCVCVSHEQE*TLLQEH
Trigger: GTGTTCCTGCAGCAGGGTCCACTCCTGCTCGTGGCT...CACACACACACACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCCTGCACACTGTAGGCTaGGGCACTGGCTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRLHTVG*GTGCWA
Trigger: GGCCCAGCAGCCAGTGCCCCAGCCTACAGTGTGCAG...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCTGTGGAGTATTTGGGTaGGTAACGGATGAAAAGCCG +
Preference number: 4 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCCGVFG*VTDEKP
Trigger: CGGCTTTTCATCCGTTACCCACCCAAATACTCCACA...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GGACATGGTAGCAACCTGGGCTGCTTAGAAGAGGCTTGGTGGAGACAGCTGGTGTGTGGAGTATTTGGGTaGGTAACGGATGAAAAGCCG +
Preference number: 4 (lower is better)
Translates to: GHGSNLGCLEEAWWRQLVCGVFG*VTDEKP
Trigger: CGGCTTTTCATCCGTTACCCACCCAAATACTCCACA...CACCAGCTGTCTCCACCAAGCCTCTTCTAAGCAGCCCAGGTTGCTACCATGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGGATGCAGCCTCAGTCTaGGGCAGAGGTGATAGGAGG +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMDAASV*GRGDRR
Trigger: CCTCCTATCACCTCTGCCTCAGACTGAGGCTGCATC...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGAGCAGGAGTGGACCCTaGTGCAGGAACACCAGCTTG +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMSRSGP*CRNTSL
Trigger: CAAGCTGGTGTTCCTGCAGCAGGGTCCACTCCTGCT...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCAGAGCCGGTCCAGTGTaGGCTCTGAGCCGGCCAACA +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRRAGPV*ALSRPT
Trigger: TGTTGGCCGGCTCAGAGCGCACACTGGACCGGCTCT...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR GCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCTGCCGCGAAGGCTGGTaGACCCACCCAGTCAAGCAG +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRCREGW*THPVKQ
Trigger: CTGCTTGACTGGGTGGGTGCACCAGCCTTCGCGGCA...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp CACCCAGGCTGGTTTCAAGCACAGGCTAGCCCTGCATTCCAAATTCTAGAGCCCAGTGTGCTCACAATTTaGGCGTGTACAGCAAGCAGT +
Preference number: 4 (lower is better)
Translates to: HPGWFQAQASPAFQILEPSVLTI*ACTASS
Trigger: ACTGCTTGCTGTACACGCCCAAATTGTGAGCACACT...GGGCTCTAGAATTTGGAATGCAGGGCTAGCCTGTGCTTGAAACCAGCCTGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp AGGAATGTCTTGAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTACCTGCCGCGAAGGCTaGTGCACCCACCCAGTCAAG +
Preference number: 4 (lower is better)
Translates to: RNVLKVSALGPFCTVCVCTCREG*CTHPVK
Trigger: CTTGACTGGGTGGGTGCACCAGCCTTCGCGGCAGGT...ACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTCAAGACATTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGTGGGGCACTGGCTGCTaGGCCATTAGAGAAGTTGGC +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMWGTGC*AIREVG
Trigger: GCCAACTTCTCTAATGGCCCAGCAGCCAGTGCCCCA...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCAGAGCCGGTCCAGTGTaGGCTCTGAGCCGGCCAACA +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPRAGPV*ALSRPT
Trigger: TGTTGGCCGGCTCAGAGCGCACACTGGACCGGCTCT...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp AGGAATGTCTTGAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTCTCCAGCCTCCTCTCTaGGGAACTGCGTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: RNVLKVSALGPFCTVCVCLQPPL*GTACPP
Trigger: TGGTGGACACGCAGTTCCCCAGAGAGGAGGCTGGAG...ACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTCAAGACATTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGGATCCTCAGCATAGATaGCACGGATGGCGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMDPQHR*HGWRLL
Trigger: CAGGAGACGCCATCCGTGCCATCTATGCTGAGGATC...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCCTGTCATCACCCCCATaGTGGCCGACAGTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPLSSPP*WPTVPP
Trigger: TGGAGGCACTGTCGGCCACCATGGGGGTGATGACAG...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCCTGTGCTGCAGACTGTaGAGTCCGGGACACAGCCAC +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPLCCRL*SPGHSH
Trigger: GTGGCTGTGTCCCGGACTCCACAGTCTGCAGCACAG...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCCCTGGTCCGCCGAGGTaGATGGGGGTGTGGAGTATT +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPPGPPR*MGVWSI
Trigger: AATACTCCACACCCCCATCCACCTCGGCGGACCAGG...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 72 bp TGGGGACGGAGGGAGCATGAAGAACAGAGGAATGTCTaGAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTG +
Preference number: 4 (lower is better)
Translates to: WGRREHEEQRNV*KVSALGPFCTV
Trigger: CACTGTACAGAAAGGGCCTAAAGCTGAAACCTTCAAGACATTCCTCTGTTCTTCATGCTCCCTCCGTCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR TCA 90 bp TGCAACTTGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACTCCACACGCTACCGTACCGTaGGTAGATGGGCTTGCCTGC +
Preference number: 4 (lower is better)
Translates to: CNLSDFYSLKTDTRHVTPHATVP*VDGLAC
Trigger: GCAGGCAAGCCCATCTACTCACGGTACGGTAGCGTG...TGGAGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR TCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCTGGGTGGGTAACGGATaGAAAGCCGGTCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRWVGNG*KAGPLP
Trigger: AGGAAGAGGACCGGCTTTTCATCCGTTACCCACCCA...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR TCA 90 bp AGGAATGTCTTGAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTTGGGTGGGTAACGGATaGAAAGCCGGTCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: RNVLKVSALGPFCTVCVCWVGNG*KAGPLP
Trigger: AGGAAGAGGACCGGCTTTTCATCCGTTACCCACCCA...ACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTCAAGACATTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TTTGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTGAACACTTGGGCAGCGCGTCTCCTGCACTCTaGACAAAGGACACCAGGGCT +
Preference number: 4 (lower is better)
Translates to: FVYRSPLKGSEESEHLGSASPAL*TKDTRA
Trigger: AGCCCTGGTGTCCTTTGTGCAGAGTGCAGGAGACGC...GCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCAGCAGGAGTGGACCCTaGTGCAGGAACACCAGCTTG +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPSRSGP*CRNTSL
Trigger: CAAGCTGGTGTTCCTGCAGCAGGGTCCACTCCTGCT...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR GCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCGTCGCTCTTCCTCTCTaGTGTATGGGGCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRVALPL*CMGPLA
Trigger: AGCTAGAGGCCCCATACAGCAGAGAGGAAGAGCGAC...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCCGTACCGTGAGTAGATaGGCTTGCCTGCCTCACTCA +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRRTVSR*ACLPHS
Trigger: TGAGTGAGGCAGGCAAGCCCATCTACTCACGGTACG...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCGGAAGGCTTCACGGTTaGTACCAAGCAGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPGRLHG*YQAAAG
Trigger: GCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCC...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TTTGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTGAACACTTGGGCAGCCAGGCGGCCATGGCATaGAAGGCTTCACGGTTGGTA +
Preference number: 4 (lower is better)
Translates to: FVYRSPLKGSEESEHLGSQAAMA*KASRLV
Trigger: TACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTG...GCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
3UTR CAA 72 bp GGCAGGTGTTTCAGGTGCCCAGGGAAACTGTGGGTCTaGCTCTTGAAGGTCACATTCATTGTTTTGGAATCT +
Preference number: 4 (lower is better)
Translates to: GRCFRCPGKLWV*LLKVTFIVLES
Trigger: AGATTCCAAAACAATGAATGTGACCTTCAAGAGCAAGACCCACAGTTTCCCTGGGCACCTGAAACACCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR TCA 90 bp TGCAACTTGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACTCCAGATGCAGCCTCAGTCTaGGGCAGAGGTGATAGGAGG +
Preference number: 4 (lower is better)
Translates to: CNLSDFYSLKTDTRHVTPDAASV*GRGDRR
Trigger: CCTCCTATCACCTCTGCCTCAGACTGAGGCTGCATC...TGGAGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR GCA 90 bp TGCAACTTGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACTCCAGCGTCTCCTGCACTCTaGACAAAGGACACCAGGGCT +
Preference number: 4 (lower is better)
Translates to: CNLSDFYSLKTDTRHVTPASPAL*TKDTRA
Trigger: AGCCCTGGTGTCCTTTGTGCAGAGTGCAGGAGACGC...TGGAGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp TTTGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTGAACACTTGGGCAGCCATAGATGGCACGGATaGCGTCTCCTGCACTCTGCA +
Preference number: 4 (lower is better)
Translates to: FVYRSPLKGSEESEHLGSHRWHG*RLLHSA
Trigger: TGCAGAGTGCAGGAGACGCCATCCGTGCCATCTATG...GCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TGCAACTTGTCTGATTTCTATTCTTTGAAAACTGACACCCGACATGTGACTCCAGAGGTGATAGGAGGCTaGATGGCTGGTCCTTGGATC +
Preference number: 4 (lower is better)
Translates to: CNLSDFYSLKTDTRHVTPEVIGG*MAGPWI
Trigger: GATCCAAGGACCAGCCATCCAGCCTCCTATCACCTC...TGGAGTCACATGTCGGGTGTCAGTTTTCAAAGAATAGAAATCAGACAAGTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CCA 90 bp GAACTGCAATTTCCAGTAGTTTCTAGGCTGGACTCCACTTCCTTGACCCCAATGATAGAAGAAACCATCTaGGTTAAAGCGAGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: ELQFPVVSRLDSTSLTPMIEETI*VKARQA
Trigger: TGCCTGCCTCGCTTTAACCCAGATGGTTTCTTCTAT...CATTGGGGTCAAGGAAGTGGAGTCCAGCCTAGAAACTACTGGAAATTGCAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp TTCAATGTCCAGAATATGTTCATGCTAGGCATCAGCACAACACATTTCCAACCCAGGTGGATGGGGGTGTaGAGTATTTGGGTGGGTAAC +
Preference number: 4 (lower is better)
Translates to: FNVQNMFMLGISTTHFQPRWMGV*SIWVGN
Trigger: GTTACCCACCCAAATACTCCACACCCCCATCCACCT...GGGTTGGAAATGTGTTGTGCTGATGCCTAGCATGAACATATTCTGGACATTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CCA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCATAGAAGAAACCATCTaGGTTAAAGCGAGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: EEFERLKLNVYISAALYRIEETI*VKARQA
Trigger: TGCCTGCCTCGCTTTAACCCAGATGGTTTCTTCTAT...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
3UTR CAA 72 bp ACAATCTGCATGGATATACCTAGATTTGGTCAGGTTTaGGATTCAATTCTTCTCTCTCTGCCTGTTAGTAAC +
Preference number: 4 (lower is better)
Translates to: TICMDIPRFGQV*DSILLSLPVSN
Trigger: GTTACTAACAGGCAGAGAGAGAAGAATTGAATCCAAAACCTGACCAAATCTAGGTATATCCATGCAGATTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS GCA 90 bp AGAGGCACACAGCGCACAGCGCCCAGGAGCAGGGCGCCCGGGTCTTaGTCCACACTGTCCAAGAGCCGGTCCAGTGTGCGCTCTGAGCCG +
Preference number: 5 (lower is better)
Translates to: RGTQRTAPRSRAPGS*STLSKSRSSVRSEP
Trigger: CGGCTCAGAGCGCACACTGGACCGGCTCTTGGACAGTGTGGAGCAAGACCCGGGCGCCCTGCTCCTGGGCGCTGTGCGCTGTGTGCCTCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp GCACTGACAAGGCCAGGCCTGGGGCTGTACAGCGCCGCAGTAGTGTaGCCAGGGCATCCCGCAGTGGACGGGCCAGAGGCACACAGCGCA +
Preference number: 5 (lower is better)
Translates to: ALTRPGLGLYSAAVV*PGHPAVDGPEAHSA
Trigger: TGCGCTGTGTGCCTCTGGCCCGTCCACTGCGGGATGCCCTGGGCACACTACTGCGGCGCTGTACAGCCCCAGGCCTGGCCTTGTCAGTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp GGGCGCCCGGGTCTTGCTCCACACTGTCCAAGAGCCGGTCCAGTGTaGGCTCTGAGCCGGCCAACAGGCGACGGAGGTCATAGTTCTGCT +
Preference number: 5 (lower is better)
Translates to: GRPGLAPHCPRAGPV*ALSRPTGDGGHSSA
Trigger: AGCAGAACTATGACCTCCGTCGCCTGTTGGCCGGCTCAGAGCGCACACTGGACCGGCTCTTGGACAGTGTGGAGCAAGACCCGGGCGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp CCAGCGTGCTTGCGTGAACCCTTTCACTGTCTCCAGCCTCCTCTCTaGGGAACTGCGTGTCCACCAAGTCCTCCACGCCCCCGGGGGCTG +
Preference number: 5 (lower is better)
Translates to: PACLREPFHCLQPPL*GTACPPSPPRPRGL
Trigger: CAGCCCCCGGGGGCGTGGAGGACTTGGTGGACACGCAGTTCCCCAGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAAGCACGCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp CAACTAAGCGCCGGCAGGCGGCCATGGCATGGAAGGCTTCACGGTTaGTACCAAGCAGCAGCAGGCAGACGGGCATGGAATCCAGGCGGG +
Preference number: 5 (lower is better)
Translates to: QLSAGRRPWHGRLHG*YQAAAGRRAWNPGG
Trigger: CCCGCCTGGATTCCATGCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCGCTTAGTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 90 bp AGGCGCAGGGGCCGGGAGGTGCTGTGGAGGCGAGCATGCAGGCGGTaGTACAAGTCTGACAGTCGCTGTCGCTCTTCCTCTCTGCTGTAT +
Preference number: 5 (lower is better)
Translates to: RRRGREVLWRRACRR*YKSDSRCRSSSLLY
Trigger: ATACAGCAGAGAGGAAGAGCGACAGCGACTGTCAGACTTGTATCACCGCCTGCATGCTCGCCTCCACAGCACCTCCCGGCCCCTGCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp GGATCCTGTGTCCTCCGGGTCCCCATCTCCGGGATCCAGCGTGCTTaGGTGAACCCTTTCACTGTCTCCAGCCTCCTCTCTGGGGAACTG +
Preference number: 5 (lower is better)
Translates to: GSCVLRVPISGIQRA*VNPFTVSSLLSGEL
Trigger: CAGTTCCCCAGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAAGCACGCTGGATCCCGGAGATGGGGACCCGGAGGACACAGGATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp CCTTGGATCCTGTGTCCTCCGGGTCCCCATCTCCGGGATCCAGCGTaGTTGCGTGAACCCTTTCACTGTCTCCAGCCTCCTCTCTGGGGA +
Preference number: 5 (lower is better)
Translates to: PWILCPPGPHLRDPA*LREPFHCLQPPLWG
Trigger: TCCCCAGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAAGCACGCTGGATCCCGGAGATGGGGACCCGGAGGACACAGGATCCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp AGATCAGCAGGGTCCAGCCGGCACTCCGCCAGCACATTCCTCTCCTaGGCCACGGTTATCAGTCGACCGCCAACAGCCAGCACTGACAAG +
Preference number: 5 (lower is better)
Translates to: RSAGSSRHSASTFLS*ATVISRPPTASTDK
Trigger: CTTGTCAGTGCTGGCTGTTGGCGGTCGACTGATAACCGTGGCCCAGGAGAGGAATGTGCTGGCGGAGTGCCGGCTGGACCCTGCTGATCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 90 bp CGGGTCTTGCTCCACACTGTCCAAGAGCCGGTCCAGTGTGCGCTCTaGGCCGGCCAACAGGCGACGGAGGTCATAGTTCTGCTTATGTGC +
Preference number: 5 (lower is better)
Translates to: RVLLHTVQEPVQCAL*AGQQATEVIVLLMC
Trigger: GCACATAAGCAGAACTATGACCTCCGTCGCCTGTTGGCCGGCTCAGAGCGCACACTGGACCGGCTCTTGGACAGTGTGGAGCAAGACCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp GAGAAGTTGGCAGCCTCCCCAAGAGTACGCAGGGCACCAAGGTTGTaGATCCCATCTTCAACTAAGCGCCGGCAGGCGGCCATGGCATGG +
Preference number: 5 (lower is better)
Translates to: EKLAASPRVRRAPRL*IPSSTKRRQAAMAW
Trigger: CCATGCCATGGCCGCCTGCCGGCGCTTAGTTGAAGATGGGATGCACAACCTTGGTGCCCTGCGTACTCTTGGGGAGGCTGCCAACTTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp TTGTGCATCCCATCTTCAACTAAGCGCCGGCAGGCGGCCATGGCATaGAAGGCTTCACGGTTGGTACCAAGCAGCAGCAGGCAGACGGGC +
Preference number: 5 (lower is better)
Translates to: LCIPSSTKRRQAAMA*KASRLVPSSSRQTG
Trigger: GCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCGCTTAGTTGAAGATGGGATGCACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp GAAGAAACCATCTGGGTTAAAGCGAGGCAGGCACACAGGTGCCCATaGTTCACCTGCCGCGAAGGCTGGTGCACCCACCCAGTCAAGCAG +
Preference number: 5 (lower is better)
Translates to: EETIWVKARQAHRCP*FTCREGWCTHPVKQ
Trigger: CTGCTTGACTGGGTGGGTGCACCAGCCTTCGCGGCAGGTGAAGCATGGGCACCTGTGTGCCTGCCTCGCTTTAACCCAGATGGTTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp GGCATAGAAGAAACCATCTGGGTTAAAGCGAGGCAGGCACACAGGTaGCCATGCTTCACCTGCCGCGAAGGCTGGTGCACCCACCCAGTC +
Preference number: 5 (lower is better)
Translates to: GIEETIWVKARQAHR*PCFTCREGWCTHPV
Trigger: GACTGGGTGGGTGCACCAGCCTTCGCGGCAGGTGAAGCATGGGCACCTGTGTGCCTGCCTCGCTTTAACCCAGATGGTTTCTTCTATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CAA 90 bp GGCGGCACAGGTGTCTGCTTGGAGCAAGCGCAGAACATCTGCAAATGCAACTGCCCTGTGAACAAGCCATaGTTGGGGGCCTGGTCCGCC +
Preference number: 5 (lower is better)
Translates to: GGTGVCLEQAQNICKCNCPVNKP*LGAWSA
Trigger: GGCGGACCAGGCCCCCAACAATGGCTTGTTCACAGG...GCAGTTGCATTTGCAGATGTTCTGCGCTTGCTCCAAGCAGACACCTGTGCCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp CAAGGTTGTGCATCCCATCTTCAACTAAGCGCCGGCAGGCGGCCATaGCATGGAAGGCTTCACGGTTGGTACCAAGCAGCAGCAGGCAGA +
Preference number: 5 (lower is better)
Translates to: QGCASHLQLSAGRRP*HGRLHGWYQAAAGR
Trigger: TCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCGCTTAGTTGAAGATGGGATGCACAACCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CAA 90 bp GCTCAGAGAGCAACCTGTGCCTCTGGCTGCTGTCACTCTTCTCCCATTTGTGGGAAGATGGCACCAGCCTaGGTTACCAGGGGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: AQRATCASGCCHSSPICGKMAPA*VTRGLR
Trigger: CCTCAGCCCCCTGGTAACCAAGGCTGGTGCCATCTT...CCCACAAATGGGAGAAGAGTGACAGCAGCCAGAGGCACAGGTTGCTCTCTGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 90 bp GCTGCAGTTTCCCAGTGCTCACAGGTGCTTGATGCAGCCTCAGTCTaGGGCAGAGGTGATAGGAGGCTGGATGGCTGGTCCTTGGATCCT +
Preference number: 5 (lower is better)
Translates to: AAVSQCSQVLDAASV*GRGDRRLDGWSLDP
Trigger: AGGATCCAAGGACCAGCCATCCAGCCTCCTATCACCTCTGCCTCAGACTGAGGCTGCATCAAGCACCTGTGAGCACTGGGAAACTGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp CGGCCAACAGGCGACGGAGGTCATAGTTCTGCTTATGTGCGAAGATaGGGGCCACGCTTGCACGCGTTAGTGTGCTCACAATTTGGGCGT +
Preference number: 5 (lower is better)
Translates to: RPTGDGGHSSAYVRR*GPRLHALVCSQFGR
Trigger: ACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGCAGAACTATGACCTCCGTCGCCTGTTGGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp GCGAAGATGCGGGCCACGCTTGCACGCGTTAGTGTGCTCACAATTTaGGCGTGTACAGCAAGCAGTTCACCTCGTAGCTGTGCTGCAGAC +
Preference number: 5 (lower is better)
Translates to: AKMRATLARVSVLTI*ACTASSSPRSCAAD
Trigger: GTCTGCAGCACAGCTACGAGGTGAACTGCTTGCTGTACACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp GGAAGGCTTCACGGTTGGTACCAAGCAGCAGCAGGCAGACGGGCATaGAATCCAGGCGGGCCACATAGGCATAGAAGAAACCATCTGGGT +
Preference number: 5 (lower is better)
Translates to: GRLHGWYQAAAGRRA*NPGGPHRHRRNHLG
Trigger: ACCCAGATGGTTTCTTCTATGCCTATGTGGCCCGCCTGGATTCCATGCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp GCTGCAGGAACACCAGCTTGTGATCCTCAGCATAGATGGCACGGATaGCGTCTCCTGCACTCTGCACAAAGGACACCAGGGCTGTCATCA +
Preference number: 5 (lower is better)
Translates to: AAGTPACDPQHRWHG*RLLHSAQRTPGLSS
Trigger: TGATGACAGCCCTGGTGTCCTTTGTGCAGAGTGCAGGAGACGCCATCCGTGCCATCTATGCTGAGGATCACAAGCTGGTGTTCCTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 90 bp ACTGGTAAACTGTGGCAGCTGGCGGTGTTGTTCAGGGATATCCAGTaGCTTATAGAGAAAATGCCGGAGGCCAGGGGCTCCCACAGCCTG +
Preference number: 5 (lower is better)
Translates to: TGKLWQLAVLFRDIQ*LIEKMPEARGSHSL
Trigger: CAGGCTGTGGGAGCCCCTGGCCTCCGGCATTTTCTCTATAAGCCACTGGATATCCCTGAACAACACCGCCAGCTGCCACAGTTTACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CAA 90 bp TACCCTGAGGAGAGCCTCAGCCCAGTCTCAGGTCTGCTTGGAAGATGGACATGGCGCAGGGCACCAAGGTaGTGCATCCCATCTTCAACT +
Preference number: 5 (lower is better)
Translates to: YPEESLSPVSGLLGRWTWRRAPR*CIPSST
Trigger: AGTTGAAGATGGGATGCACAACCTTGGTGCCCTGCG...CCATGTCCATCTTCCAAGCAGACCTGAGACTGGGCTGAGGCTCTCCTCAGGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 90 bp TCTGCTTATGTGCGAAGATGCGGGCCACGCTTGCACGCGTTAGTGTaGTCACAATTTGGGCGTGTACAGCAAGCAGTTCACCTCGTAGCT +
Preference number: 5 (lower is better)
Translates to: SAYVRRCGPRLHALV*SQFGRVQQAVHLVA
Trigger: AGCTACGAGGTGAACTGCTTGCTGTACACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 90 bp GCTTCGTCACTACTAAGATGGCACCAGCCTTGGTTACCAGGGGGCTaGGGCAAGTATAGAGCTCAAACTTGGAAGTCACCCAAGCCAGCA +
Preference number: 5 (lower is better)
Translates to: ASSLLRWHQPWLPGG*GKYRAQTWKSPKPA
Trigger: TGCTGGCTTGGGTGACTTCCAAGTTTGAGCTCTATACTTGCCTCAGCCCCCTGGTAACCAAGGCTGGTGCCATCTTAGTAGTGACGAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CAA 90 bp GAAGGTTTCAGCTTTAGGCCCTTTCTGTACAGTGTGTGTGTGTGTGTGTGTGTGTGGAAGGCTTCACGGTaGGTACCAAGCAGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: EGFSFRPFLYSVCVCVCVWKASR*VPSSSR
Trigger: CCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCA...CACACACACACACACACACACACTGTACAGAAAGGGCCTAAAGCTGAAACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CAA 90 bp GAGGAATTTGAAAGGTTGAAGCTAAATGTTTACATCTCTGCGGCACTGTACCGCCCTGTGAACAAGCCATaGTTGGGGGCCTGGTCCGCC +
Preference number: 5 (lower is better)
Translates to: EEFERLKLNVYISAALYRPVNKP*LGAWSA
Trigger: GGCGGACCAGGCCCCCAACAATGGCTTGTTCACAGG...GCGGTACAGTGCCGCAGAGATGTAAACATTTAGCTTCAACCTTTCAAATTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035777.10
CDS-3UTR CAA 90 bp TTTGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTGAACACTTGGGCAGCAAGATGGCACCAGCCTaGGTTACCAGGGGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: FVYRSPLKGSEESEHLGSKMAPA*VTRGLR
Trigger: CCTCAGCCCCCTGGTAACCAAGGCTGGTGCCATCTT...GCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS-3UTR CAA 90 bp TTTGTTTACAGGTCTCCACTAAAAGGTTCAGAAGAAAGTGAACACTTGGGCAGCCGCAGGGCACCAAGGTaGTGCATCCCATCTTCAACT +
Preference number: 5 (lower is better)
Translates to: FVYRSPLKGSEESEHLGSRRAPR*CIPSST
Trigger: AGTTGAAGATGGGATGCACAACCTTGGTGCCCTGCG...GCTGCCCAAGTGTTCACTTTCTTCTGAACCTTTTAGTGGAGACCTGTAAACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp CAGCGCACAGCGCCCAGGAGCAGGGCGCCCGGGTCTTaGTCCACACTGTCCAAGAGCCGGTCCAGTGTGCGC +
Preference number: 6 (lower is better)
Translates to: QRTAPRSRAPGS*STLSKSRSSVR
Trigger: GCGCACACTGGACCGGCTCTTGGACAGTGTGGAGCAAGACCCGGGCGCCCTGCTCCTGGGCGCTGTGCGCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 72 bp ACAGCGCACAGCGCCCAGGAGCAGGGCGCCCGGGTCTaGCTCCACACTGTCCAAGAGCCGGTCCAGTGTGCG +
Preference number: 6 (lower is better)
Translates to: TAHSAQEQGARV*LHTVQEPVQCA
Trigger: CGCACACTGGACCGGCTCTTGGACAGTGTGGAGCAAGACCCGGGCGCCCTGCTCCTGGGCGCTGTGCGCTGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp GGGTCCAGCCGGCACTCCGCCAGCACATTCCTCTCCTaGGCCACGGTTATCAGTCGACCGCCAACAGCCAGC +
Preference number: 6 (lower is better)
Translates to: GSSRHSASTFLS*ATVISRPPTAS
Trigger: GCTGGCTGTTGGCGGTCGACTGATAACCGTGGCCCAGGAGAGGAATGTGCTGGCGGAGTGCCGGCTGGACCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 72 bp CGCCGGCAGGCGGCCATGGCATGGAAGGCTTCACGGTaGGTACCAAGCAGCAGCAGGCAGACGGGCATGGAA +
Preference number: 6 (lower is better)
Translates to: RRQAAMAWKASR*VPSSSRQTGME
Trigger: TTCCATGCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 72 bp TCCGGGTCCCCATCTCCGGGATCCAGCGTGCTTGCGTaGACCCTTTCACTGTCTCCAGCCTCCTCTCTGGGG +
Preference number: 6 (lower is better)
Translates to: SGSPSPGSSVLA*TLSLSPASSLG
Trigger: CCCCAGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAAGCACGCTGGATCCCGGAGATGGGGACCCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GGTCTTGCTCCACACTGTCCAAGAGCCGGTCCAGTGTaGGCTCTGAGCCGGCCAACAGGCGACGGAGGTCAT +
Preference number: 6 (lower is better)
Translates to: GLAPHCPRAGPV*ALSRPTGDGGH
Trigger: ATGACCTCCGTCGCCTGTTGGCCGGCTCAGAGCGCACACTGGACCGGCTCTTGGACAGTGTGGAGCAAGACC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GCAGCCTCCCCAAGAGTACGCAGGGCACCAAGGTTGTaGATCCCATCTTCAACTAAGCGCCGGCAGGCGGCC +
Preference number: 6 (lower is better)
Translates to: AASPRVRRAPRL*IPSSTKRRQAA
Trigger: GGCCGCCTGCCGGCGCTTAGTTGAAGATGGGATGCACAACCTTGGTGCCCTGCGTACTCTTGGGGAGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp GCCGGCAGGCGGCCATGGCATGGAAGGCTTCACGGTTaGTACCAAGCAGCAGCAGGCAGACGGGCATGGAAT +
Preference number: 6 (lower is better)
Translates to: AGRRPWHGRLHG*YQAAAGRRAWN
Trigger: ATTCCATGCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 90 bp TCAACTAAGCGCCGGCAGGCGGCCATGGCATGGAAGGCTTCACGGTaGGTACCAAGCAGCAGCAGGCAGACGGGCATGGAATCCAGGCGG +
Preference number: 6 (lower is better)
Translates to: STKRRQAAMAWKASR*VPSSSRQTGMESRR
Trigger: CCGCCTGGATTCCATGCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCGCTTAGTTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 72 bp CTCCACACTGTCCAAGAGCCGGTCCAGTGTGCGCTCTaGGCCGGCCAACAGGCGACGGAGGTCATAGTTCTG +
Preference number: 6 (lower is better)
Translates to: LHTVQEPVQCAL*AGQQATEVIVL
Trigger: CAGAACTATGACCTCCGTCGCCTGTTGGCCGGCTCAGAGCGCACACTGGACCGGCTCTTGGACAGTGTGGAG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GTCCTCCGGGTCCCCATCTCCGGGATCCAGCGTGCTTaGGTGAACCCTTTCACTGTCTCCAGCCTCCTCTCT +
Preference number: 6 (lower is better)
Translates to: VLRVPISGIQRA*VNPFTVSSLLS
Trigger: AGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAAGCACGCTGGATCCCGGAGATGGGGACCCGGAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp ATCTGGGTTAAAGCGAGGCAGGCACACAGGTGCCCATaGTTCACCTGCCGCGAAGGCTGGTGCACCCACCCA +
Preference number: 6 (lower is better)
Translates to: IWVKARQAHRCP*FTCREGWCTHP
Trigger: TGGGTGGGTGCACCAGCCTTCGCGGCAGGTGAAGCATGGGCACCTGTGTGCCTGCCTCGCTTTAACCCAGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp GAGGCAGAGGTGATAGGAGGCTGGATGGCTGGTCCTTaGATCCTGTGTCCTCCGGGTCCCCATCTCCGGGAT +
Preference number: 6 (lower is better)
Translates to: EAEVIGGWMAGP*ILCPPGPHLRD
Trigger: ATCCCGGAGATGGGGACCCGGAGGACACAGGATCCAAGGACCAGCCATCCAGCCTCCTATCACCTCTGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 90 bp TGGATCCTGTGTCCTCCGGGTCCCCATCTCCGGGATCCAGCGTGCTaGCGTGAACCCTTTCACTGTCTCCAGCCTCCTCTCTGGGGAACT +
Preference number: 6 (lower is better)
Translates to: WILCPPGPHLRDPAC*REPFHCLQPPLWGT
Trigger: AGTTCCCCAGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAAGCACGCTGGATCCCGGAGATGGGGACCCGGAGGACACAGGATCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GAAACCATCTGGGTTAAAGCGAGGCAGGCACACAGGTaGCCATGCTTCACCTGCCGCGAAGGCTGGTGCACC +
Preference number: 6 (lower is better)
Translates to: ETIWVKARQAHR*PCFTCREGWCT
Trigger: GGTGCACCAGCCTTCGCGGCAGGTGAAGCATGGGCACCTGTGTGCCTGCCTCGCTTTAACCCAGATGGTTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp TTGCGTGAACCCTTTCACTGTCTCCAGCCTCCTCTCTaGGGAACTGCGTGTCCACCAAGTCCTCCACGCCCC +
Preference number: 6 (lower is better)
Translates to: LREPFHCLQPPL*GTACPPSPPRP
Trigger: GGGGCGTGGAGGACTTGGTGGACACGCAGTTCCCCAGAGAGGAGGCTGGAGACAGTGAAAGGGTTCACGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp AGACTGTGGAGTCCGGGACACAGCCACGAGCAGGAGTaGACCCTGCTGCAGGAACACCAGCTTGTGATCCTC +
Preference number: 6 (lower is better)
Translates to: RLWSPGHSHEQE*TLLQEHQLVIL
Trigger: GAGGATCACAAGCTGGTGTTCCTGCAGCAGGGTCCACTCCTGCTCGTGGCTGTGTCCCGGACTCCACAGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp CCATCTTCAACTAAGCGCCGGCAGGCGGCCATGGCATaGAAGGCTTCACGGTTGGTACCAAGCAGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: PSSTKRRQAAMA*KASRLVPSSSR
Trigger: CCTGCTGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCGCTTAGTTGAAGATGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 72 bp TTGGCAGCCTCCCCAAGAGTACGCAGGGCACCAAGGTaGTGCATCCCATCTTCAACTAAGCGCCGGCAGGCG +
Preference number: 6 (lower is better)
Translates to: LAASPRVRRAPR*CIPSSTKRRQA
Trigger: CGCCTGCCGGCGCTTAGTTGAAGATGGGATGCACAACCTTGGTGCCCTGCGTACTCTTGGGGAGGCTGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp ATGCAGCCTCAGTCTGAGGCAGAGGTGATAGGAGGCTaGATGGCTGGTCCTTGGATCCTGTGTCCTCCGGGT +
Preference number: 6 (lower is better)
Translates to: MQPQSEAEVIGG*MAGPWILCPPG
Trigger: ACCCGGAGGACACAGGATCCAAGGACCAGCCATCCAGCCTCCTATCACCTCTGCCTCAGACTGAGGCTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp GCATCCCATCTTCAACTAAGCGCCGGCAGGCGGCCATaGCATGGAAGGCTTCACGGTTGGTACCAAGCAGCA +
Preference number: 6 (lower is better)
Translates to: ASHLQLSAGRRP*HGRLHGWYQAA
Trigger: TGCTGCTTGGTACCAACCGTGAAGCCTTCCATGCCATGGCCGCCTGCCGGCGCTTAGTTGAAGATGGGATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp CAAGCCATTGTTGGGGGCCTGGTCCGCCGAGGTGGATaGGGGTGTGGAGTATTTGGGTGGGTAACGGATGAA +
Preference number: 6 (lower is better)
Translates to: QAIVGGLVRRGG*GCGVFGWVTDE
Trigger: TTCATCCGTTACCCACCCAAATACTCCACACCCCCATCCACCTCGGCGGACCAGGCCCCCAACAATGGCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 90 bp GGCTGCTGTCTGAGGCTGCTGCAGTTTCCCAGTGCTCACAGGTGCTaGATGCAGCCTCAGTCTGAGGCAGAGGTGATAGGAGGCTGGATG +
Preference number: 6 (lower is better)
Translates to: GCCLRLLQFPSAHRC*MQPQSEAEVIGGWM
Trigger: CATCCAGCCTCCTATCACCTCTGCCTCAGACTGAGGCTGCATCAAGCACCTGTGAGCACTGGGAAACTGCAGCAGCCTCAGACAGCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 90 bp TTAGAGAAGTTGGCAGCCTCCCCAAGAGTACGCAGGGCACCAAGGTaGTGCATCCCATCTTCAACTAAGCGCCGGCAGGCGGCCATGGCA +
Preference number: 6 (lower is better)
Translates to: LEKLAASPRVRRAPR*CIPSSTKRRQAAMA
Trigger: TGCCATGGCCGCCTGCCGGCGCTTAGTTGAAGATGGGATGCACAACCTTGGTGCCCTGCGTACTCTTGGGGAGGCTGCCAACTTCTCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 72 bp GCTGTGGAGGCGAGCATGCAGGCGGTGATACAAGTCTaGCAGTCGCTGTCGCTCTTCCTCTCTGCTGTATGG +
Preference number: 6 (lower is better)
Translates to: AVEASMQAVIQV*QSLSLFLSAVW
Trigger: CCATACAGCAGAGAGGAAGAGCGACAGCGACTGTCAGACTTGTATCACCGCCTGCATGCTCGCCTCCACAGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp CACGGTTGGTACCAAGCAGCAGCAGGCAGACGGGCATaGAATCCAGGCGGGCCACATAGGCATAGAAGAAAC +
Preference number: 6 (lower is better)
Translates to: HGWYQAAAGRRA*NPGGPHRHRRN
Trigger: GTTTCTTCTATGCCTATGTGGCCCGCCTGGATTCCATGCCCGTCTGCCTGCTGCTGCTTGGTACCAACCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp CTGTGGCAGCTGGCGGTGTTGTTCAGGGATATCCAGTaGCTTATAGAGAAAATGCCGGAGGCCAGGGGCTCC +
Preference number: 6 (lower is better)
Translates to: LWQLAVLFRDIQ*LIEKMPEARGS
Trigger: GGAGCCCCTGGCCTCCGGCATTTTCTCTATAAGCCACTGGATATCCCTGAACAACACCGCCAGCTGCCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GTGATCCTCAGCATAGATGGCACGGATGGCGTCTCCTaGACTCTGCACAAAGGACACCAGGGCTGTCATCAC +
Preference number: 6 (lower is better)
Translates to: VILSIDGTDGVS*TLHKGHQGCHH
Trigger: GTGATGACAGCCCTGGTGTCCTTTGTGCAGAGTGCAGGAGACGCCATCCGTGCCATCTATGCTGAGGATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GTGCGAAGATGCGGGCCACGCTTGCACGCGTTAGTGTaGTCACAATTTGGGCGTGTACAGCAAGCAGTTCAC +
Preference number: 6 (lower is better)
Translates to: VRRCGPRLHALV*SQFGRVQQAVH
Trigger: GTGAACTGCTTGCTGTACACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp GGCGACGGAGGTCATAGTTCTGCTTATGTGCGAAGATaGGGGCCACGCTTGCACGCGTTAGTGTGCTCACAA +
Preference number: 6 (lower is better)
Translates to: GDGGHSSAYVRR*GPRLHALVCSQ
Trigger: TTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGCAGAACTATGACCTCCGTCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp ACACCAGCTTGTGATCCTCAGCATAGATGGCACGGATaGCGTCTCCTGCACTCTGCACAAAGGACACCAGGG +
Preference number: 6 (lower is better)
Translates to: TPACDPQHRWHG*RLLHSAQRTPG
Trigger: CCCTGGTGTCCTTTGTGCAGAGTGCAGGAGACGCCATCCGTGCCATCTATGCTGAGGATCACAAGCTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp GCTGCAGGAACACCAGCTTGTGATCCTCAGCATAGATaGCACGGATGGCGTCTCCTGCACTCTGCACAAAGG +
Preference number: 6 (lower is better)
Translates to: AAGTPACDPQHR*HGWRLLHSAQR
Trigger: CCTTTGTGCAGAGTGCAGGAGACGCCATCCGTGCCATCTATGCTGAGGATCACAAGCTGGTGTTCCTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CCA 72 bp CGGGCCACGCTTGCACGCGTTAGTGTGCTCACAATTTaGGCGTGTACAGCAAGCAGTTCACCTCGTAGCTGT +
Preference number: 6 (lower is better)
Translates to: RATLARVSVLTI*ACTASSSPRSC
Trigger: ACAGCTACGAGGTGAACTGCTTGCTGTACACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 72 bp CTGAGGCTGCTGCAGTTTCCCAGTGCTCACAGGTGCTaGATGCAGCCTCAGTCTGAGGCAGAGGTGATAGGA +
Preference number: 6 (lower is better)
Translates to: LRLLQFPSAHRC*MQPQSEAEVIG
Trigger: TCCTATCACCTCTGCCTCAGACTGAGGCTGCATCAAGCACCTGTGAGCACTGGGAAACTGCAGCAGCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 72 bp TGGATGGGGGTGTGGAGTATTTGGGTGGGTAACGGATaGAAAGCCGGTCCTCTTCCTTCCTTACCCAGCGCA +
Preference number: 6 (lower is better)
Translates to: WMGVWSIWVGNG*KAGPLPSLPSA
Trigger: TGCGCTGGGTAAGGAAGGAAGAGGACCGGCTTTTCATCCGTTACCCACCCAAATACTCCACACCCCCATCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS GCA 72 bp TGTCTGAGGCTGCTGCAGTTTCCCAGTGCTCACAGGTaGTTGATGCAGCCTCAGTCTGAGGCAGAGGTGATA +
Preference number: 6 (lower is better)
Translates to: CLRLLQFPSAHR*LMQPQSEAEVI
Trigger: TATCACCTCTGCCTCAGACTGAGGCTGCATCAAGCACCTGTGAGCACTGGGAAACTGCAGCAGCCTCAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 90 bp GACGGAGGTCATAGTTCTGCTTATGTGCGAAGATGCGGGCCACGCTaGCACGCGTTAGTGTGCTCACAATTTGGGCGTGTACAGCAAGCA +
Preference number: 6 (lower is better)
Translates to: DGGHSSAYVRRCGPR*HALVCSQFGRVQQA
Trigger: TGCTTGCTGTACACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGCAGAACTATGACCTCCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS TCA 72 bp CTACTAAGATGGCACCAGCCTTGGTTACCAGGGGGCTaGGGCAAGTATAGAGCTCAAACTTGGAAGTCACCC +
Preference number: 6 (lower is better)
Translates to: LLRWHQPWLPGG*GKYRAQTWKSP
Trigger: GGGTGACTTCCAAGTTTGAGCTCTATACTTGCCTCAGCCCCCTGGTAACCAAGGCTGGTGCCATCTTAGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9
CDS CAA 72 bp CATAGTTCTGCTTATGTGCGAAGATGCGGGCCACGCTaGCACGCGTTAGTGTGCTCACAATTTGGGCGTGTA +
Preference number: 6 (lower is better)
Translates to: HSSAYVRRCGPR*HALVCSQFGRV
Trigger: TACACGCCCAAATTGTGAGCACACTAACGCGTGCAAGCGTGGCCCGCATCTTCGCACATAAGCAGAACTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035777.10
ENSMUST00000179926.9