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Pregenerated sensors for MOGAT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052396

Ensembl transcript IDs: ENSMUST00000064231.8

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATaGACAGGGAGGCCTGGGGTGCTGGCTTCTCTTGCACTGTCCCTC +
Preference number: 1 (lower is better)
Translates to: APRLCLRGKKQHQGP*TGRPGVLASLALSL
Trigger: GAGGGACAGTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR GCA 90 bp GAGGGAAGAAGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTaGTGGCTTCTCTTGCACTGTCCCTCAAGGGTAGATGAAGAACAG +
Preference number: 1 (lower is better)
Translates to: EGRSSIRDHAQGGLG*WLLLHCPSRVDEEQ
Trigger: CTGTTCTTCATCTACCCTTGAGGGACAGTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR GCA 90 bp AAGAAACATAGAGTAGGTGCCAGGGCAGACTTGGCTCCCCGTCTCTaGCTCAGAGGGAAGAAGCAGCATCAGGGACCATGCACAGGGAGG +
Preference number: 1 (lower is better)
Translates to: KKHRVGARADLAPRL*LRGKKQHQGPCTGR
Trigger: CCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTGCCCTGGCACCTACTCTATGTTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR TCA 90 bp GAGGCTCAGGATATGGGAAGGAGACCTACCCTCGGTCATAGTCAGTaGCCCCTGCCCTCCTTATCTGCCTTCTGGGCTCCTTTGGTATCA +
Preference number: 1 (lower is better)
Translates to: EAQDMGRRPTLGHSQ*PLPSLSAFWAPLVS
Trigger: TGATACCAAAGGAGCCCAGAAGGCAGATAAGGAGGGCAGGGGTCACTGACTATGACCGAGGGTAGGTCTCCTTCCCATATCCTGAGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CCA 90 bp CTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAGAGCTTTaGCTACAGGTTCAAATCCCAGGATTAGGAGCTGCCCCCTCTTCC +
Preference number: 1 (lower is better)
Translates to: LQMCRQAKDRETSEL*LQVQIPGLGAAPSS
Trigger: GGAAGAGGGGGCAGCTCCTAATCCTGGGATTTGAACCTGTAGCCAAAGCTCTGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR TCA 90 bp GAACAGTTTTGTTCTCTTTCTCCCTGTTTGTCCTTTGGTCATGTTTaGATGACATTACAACTGTGGGAAGAGACCTCAGGAATTTCTCTC +
Preference number: 1 (lower is better)
Translates to: EQFCSLSPCLSFGHV*MTLQLWEETSGISL
Trigger: GAGAGAAATTCCTGAGGTCTCTTCCCACAGTTGTAATGTCATTCAAACATGACCAAAGGACAAACAGGGAGAAAGAGAACAAAACTGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR GCA 90 bp CCCTCGGTCATAGTCAGTGACCCCTGCCCTCCTTATCTGCCTTCTGGGCTCCTTTTGGCTCCCCGTCTCTaGCTCAGAGGGAAGAAGCAG +
Preference number: 2 (lower is better)
Translates to: PSVIVSDPCPPYLPSGLLLAPRL*LRGKKQ
Trigger: CTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAA...AAGGAGCCCAGAAGGCAGATAAGGAGGGCAGGGGTCACTGACTATGACCGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CAA 90 bp TCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAGAGCTTaGGCTACAGGTTCAAATCCCAGGATTAGGAGCTGCCCCCTCTTC +
Preference number: 2 (lower is better)
Translates to: STDVQTGQGQGDLRA*ATGSNPRIRSCPLF
Trigger: GAAGAGGGGGCAGCTCCTAATCCTGGGATTTGAACCTGTAGCCAAAGCTCTGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR TCA 90 bp GACAGACTCCTTTCATTTATTGAGGTAACATGTACAGTGCTGCCCTTCAGTGCCGTGGAGCCTCTGTGGTaGGCAGTGTGGCGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: DRLLSFIEVTCTVLPFSAVEPLW*AVWRSQ
Trigger: CTGGGAGCGCCACACTGCTCACCACAGAGGCTCCAC...GGCACTGAAGGGCAGCACTGTACATGTTACCTCAATAAATGAAAGGAGTCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR CCA 90 bp TTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAGAGCTCCCCCTCTTCCATCTTaGCAGTTGTGGCTAGGTTTG +
Preference number: 2 (lower is better)
Translates to: FPHSTDVQTGQGQGDLRAPPLPS*QLWLGL
Trigger: CAAACCTAGCCACAACTGCCAAGATGGAAGAGGGGG...AGCTCTGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR TCA 90 bp GGGAAGAAGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTGCTGGCTTCTTTGGTCATGTTTGAATaGCATTACAACTGTGGGAAG +
Preference number: 2 (lower is better)
Translates to: GKKQHQGPCTGRPGVLASLVMFE*HYNCGK
Trigger: CTTCCCACAGTTGTAATGTCATTCAAACATGACCAA...AGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR CCA 90 bp AGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTGCTGGCTTCTCTTGCACATGACATTACAACTGTaGGAAGAGACCTCAGGAATT +
Preference number: 2 (lower is better)
Translates to: SSIRDHAQGGLGCWLLLHMTLQL*EETSGI
Trigger: AATTCCTGAGGTCTCTTCCCACAGTTGTAATGTCAT...GTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR TCA 90 bp CAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATTCCCTCAAGGGTAGATaGAGAACAGTTTTGTTCTCT +
Preference number: 2 (lower is better)
Translates to: QTWLPVSASEGRSSIRDHSLKGR*RTVLFS
Trigger: AGAGAACAAAACTGTTCTTCATCTACCCTTGAGGGA...ATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR GCA 72 bp AGAGTAGGTGCCAGGGCAGACTTGGCTCCCCGTCTCTaGCTCAGAGGGAAGAAGCAGCATCAGGGACCATGC +
Preference number: 3 (lower is better)
Translates to: RVGARADLAPRL*LRGKKQHQGPC
Trigger: GCATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTGCCCTGGCACCTACTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CCA 72 bp GAAGAAGCAGCATCAGGGACCATGCACAGGGAGGCCTaGGGTGCTGGCTTCTCTTGCACTGTCCCTCAAGGG +
Preference number: 3 (lower is better)
Translates to: EEAASGTMHREA*GAGFSCTVPQG
Trigger: CCCTTGAGGGACAGTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR GCA 72 bp AGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTaGTGGCTTCTCTTGCACTGTCCCTCAAGGGTAGAT +
Preference number: 3 (lower is better)
Translates to: SSIRDHAQGGLG*WLLLHCPSRVD
Trigger: ATCTACCCTTGAGGGACAGTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR-3UTR CAA 90 bp GCTTTTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAGGCCCCCTCTTCCATCTaGGCAGTTGTGGCTAGGTTT +
Preference number: 3 (lower is better)
Translates to: AFPPFYRCADRPRTGRPQAPSSI*AVVARF
Trigger: AAACCTAGCCACAACTGCCAAGATGGAAGAGGGGGC...CTGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAAAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR GCA 72 bp GAAGGAGACCTACCCTCGGTCATAGTCAGTGACCCCTaGCCTCCTTATCTGCCTTCTGGGCTCCTTTGGTAT +
Preference number: 3 (lower is better)
Translates to: EGDLPSVIVSDP*PPYLPSGLLWY
Trigger: ATACCAAAGGAGCCCAGAAGGCAGATAAGGAGGGCAGGGGTCACTGACTATGACCGAGGGTAGGTCTCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CCA 72 bp TGCAGACAGGCCAAGGACAGGGAGACCTCAGAGCTTTaGCTACAGGTTCAAATCCCAGGATTAGGAGCTGCC +
Preference number: 3 (lower is better)
Translates to: CRQAKDRETSEL*LQVQIPGLGAA
Trigger: GGCAGCTCCTAATCCTGGGATTTGAACCTGTAGCCAAAGCTCTGAGGTCTCCCTGTCCTTGGCCTGTCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CCA 72 bp GACCCCTGCCCTCCTTATCTGCCTTCTGGGCTCCTTTaGTATCATAGCTCAGAGGACCCAGAATCTGAAGAA +
Preference number: 3 (lower is better)
Translates to: DPCPPYLPSGLL*YHSSEDPESEE
Trigger: TTCTTCAGATTCTGGGTCCTCTGAGCTATGATACCAAAGGAGCCCAGAAGGCAGATAAGGAGGGCAGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR GCA 72 bp AACTGTGGGAAGAGACCTCAGGAATTTCTCTCTGACTaGTTTTCCCCCATTCTACAGATGTGCAGACAGGCC +
Preference number: 3 (lower is better)
Translates to: NCGKRPQEFLSD*FSPILQMCRQA
Trigger: GGCCTGTCTGCACATCTGTAGAATGGGGGAAAAGCAGTCAGAGAGAAATTCCTGAGGTCTCTTCCCACAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CCA 72 bp ATGTACAGTGCTGCCCTTCAGTGCCAAGACAGAGGCTaGAGTTCACTAGAAAGCATGAGTAAGAGGCTCTCT +
Preference number: 3 (lower is better)
Translates to: MYSAALQCQDRG*SSLESMSKRLS
Trigger: AGAGAGCCTCTTACTCATGCTTTCTAGTGAACTCCAGCCTCTGTCTTGGCACTGAAGGGCAGCACTGTACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR TCA 72 bp TTACAACTGTGGGAAGAGACCTCAGGAATTTCTCTCTaGCTGCTTTTCCCCCATTCTACAGATGTGCAGACA +
Preference number: 3 (lower is better)
Translates to: LQLWEETSGISL*LLFPHSTDVQT
Trigger: TGTCTGCACATCTGTAGAATGGGGGAAAAGCAGTCAGAGAGAAATTCCTGAGGTCTCTTCCCACAGTTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR TCA 90 bp AGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTGCTGGCTTCTCTTGCACGTCCACCTCCTCCCTTaGGGGCTGTGGTGTCATCTG +
Preference number: 4 (lower is better)
Translates to: SSIRDHAQGGLGCWLLLHVHLLP*GLWCHL
Trigger: CAGATGACACCACAGCCCTCAAGGGAGGAGGTGGAC...GTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR GCA 90 bp TTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAGAGCTAGGCCTGGCGTCCAGTaGCTCCTGCGCGCCCCCAAC +
Preference number: 4 (lower is better)
Translates to: FPHSTDVQTGQGQGDLRARPGVQ*LLRAPN
Trigger: GTTGGGGGCGCGCAGGAGGCACTGGACGCCAGGCCT...AGCTCTGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR GCA 90 bp GGGAAGAAGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTGCTGGCTTCTGGCTGTGGTGTCATCTaGACCTCGATGGGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: GKKQHQGPCTGRPGVLASGCGVI*TSMGFP
Trigger: GGGGAAGCCCATCGAGGTGCAGATGACACCACAGCC...AGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR TCA 90 bp GGTGGCTGTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCGGAGGGAGATGCCCATaGTCTTCTGTAGCCGGTTCT +
Preference number: 4 (lower is better)
Translates to: GGCGSPPNPTLLQALRCSGGRCP*SSVAGS
Trigger: AGAACCGGCTACAGAAGATCATGGGCATCTCCCTCC...GCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCACAGCCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp GTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCTGTCTTCAAGCGTCTGAAGAACTaGATGGGCCGGCCTCCCTGC +
Preference number: 4 (lower is better)
Translates to: VEVPLIPHSCRRSDAAVFKRLKN*MGRPPC
Trigger: GCAGGGAGGCCGGCCCATCCAGTTCTTCAGACGCTT...GAAGACAGCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp GTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCTGTCTTCTCCCGCCGCCCTTCCTaGACAGAATGTGATCGGCAC +
Preference number: 4 (lower is better)
Translates to: VEVPLIPHSCRRSDAAVFSRRPS*TECDRH
Trigger: GTGCCGATCACATTCTGTCCAGGAAGGGCGGCGGGA...GAAGACAGCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp CAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATATGGTGGTGATGGGCTaGCGGAAGGGCATGAGGCCA +
Preference number: 4 (lower is better)
Translates to: QTWLPVSASEGRSSIRDHMVVMG*RKGMRP
Trigger: TGGCCTCATGCCCTTCCGCCAGCCCATCACCACCAT...ATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR TCA 90 bp CAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATATATGGCCAAGCGTCTaGAGAACTGGATGGGCCGGC +
Preference number: 4 (lower is better)
Translates to: QTWLPVSASEGRSSIRDHIWPSV*RTGWAG
Trigger: GCCGGCCCATCCAGTTCTTCAGACGCTTGGCCATAT...ATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp TGTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCTGTCTTATGACGATGCAGAGCTaGGCCAAGGCCAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: CGSPPNPTLLQALRCSCLMTMQS*AKARKE
Trigger: CTCCTTCCTGGCCTTGGCCCAGCTCTGCATCGTCAT...AAGACAGCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp CTGACTGCTTTTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGAGCTGCTAGGACTCCATaGGGGTGGAAGCCCGCGATG +
Preference number: 4 (lower is better)
Translates to: LTAFPPFYRCADRPRTGRAARTP*GWKPAM
Trigger: CATCGCGGGCTTCCACCCCCATGGAGTCCTAGCAGC...TCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAAAAGCAGTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp CAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATAAGACACCTCTGCCGTaGAAGAGAGGGAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: QTWLPVSASEGRSSIRDHKTPLP*KRGREM
Trigger: CATCTCCCTCCCTCTCTTCCACGGCAGAGGTGTCTT...ATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp CAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATTCATCTGCACCTCGATaGGCTTCCCCACTATGGTGG +
Preference number: 4 (lower is better)
Translates to: QTWLPVSASEGRSSIRDHSSAPR*ASPLWW
Trigger: CCACCATAGTGGGGAAGCCCATCGAGGTGCAGATGA...ATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp GTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCTGTCTTCCCAGGTACCACCAGGTaGCATACAGGACAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: VEVPLIPHSCRRSDAAVFPGTTR*HTGQRR
Trigger: TCTTCTCTGTCCTGTATGCCACCTGGTGGTACCTGG...GAAGACAGCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR TCA 90 bp GTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCTGTCTTCCCAGCTCAGCTGTCTTaGCCAAAGAGACAGGGAAAT +
Preference number: 4 (lower is better)
Translates to: VEVPLIPHSCRRSDAAVFPAQLS*PKRQGN
Trigger: ATTTCCCTGTCTCTTTGGTCAAGACAGCTGAGCTGG...GAAGACAGCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR GCA 90 bp TGCTTTTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAACTGGAAGACACCTCTaGCGTGGAAGAGAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: CFSPILQMCRQAKDRETSTGRHL*RGREGG
Trigger: CCCTCCCTCTCTTCCACGGCAGAGGTGTCTTCCAGT...TGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAAAAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CAA 72 bp GACCATGCACAGGGAGGCCTGGGGTGCTGGCTTCTCTaGCACTGTCCCTCAAGGGTAGATGAAGAACAGTTT +
Preference number: 4 (lower is better)
Translates to: DHAQGGLGCWLL*HCPSRVDEEQF
Trigger: AAACTGTTCTTCATCTACCCTTGAGGGACAGTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp TGCTTTTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAAGGCCAAAGCTGTACTaGAAGACACCTCTGCCGTGG +
Preference number: 4 (lower is better)
Translates to: CFSPILQMCRQAKDRETSRPKLY*KTPLPW
Trigger: CCACGGCAGAGGTGTCTTCCAGTACAGCTTTGGCCT...TGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAAAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CAA 72 bp AATCTGAAGAAACATAGAGTAGGTGCCAGGGCAGACTaGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAG +
Preference number: 4 (lower is better)
Translates to: NLKKHRVGARAD*APRLCLRGKKQ
Trigger: CTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTGCCCTGGCACCTACTCTATGTTTCTTCAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR GCA 90 bp TGTGGAAGTCCCCCTAATCCCACACTCCTGCAGGCGCTCAGATGCAGCTGTCTTTTGAACTTGAGTTTGTaGTCCTCAAAGAGCTTGCAG +
Preference number: 4 (lower is better)
Translates to: CGSPPNPTLLQALRCSCLLNLSL*SSKSLQ
Trigger: CTGCAAGCTCTTTGAGGAGCACAAACTCAAGTTCAA...AAGACAGCTGCATCTGAGCGCCTGCAGGAGTGTGGGATTAGGGGGACTTCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR TCA 90 bp TGTTTGAATGACATTACAACTGTGGGAAGAGACCTCAGGAATTTCTCTCTGACTAGAGCCAGAACCTTGTaGATAGGAGGCCTACGAAGA +
Preference number: 4 (lower is better)
Translates to: CLNDITTVGRDLRNFSLTRARTL*IGGLRR
Trigger: TCTTCGTAGGCCTCCTATTCACAAGGTTCTGGCTCT...AGTCAGAGAGAAATTCCTGAGGTCTCTTCCCACAGTTGTAATGTCATTCAAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR TCA 90 bp GACAGACTCCTTTCATTTATTGAGGTAACATGTACAGTGCTGCCCTTCAGTGCCTGTTCTCAACCTGGTTaGACAGGTTGTTTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: DRLLSFIEVTCTVLPFSACSQPG*TGCFLQ
Trigger: TTGGAGAAAACAACCTGTTCAACCAGGTTGAGAACA...GGCACTGAAGGGCAGCACTGTACATGTTACCTCAATAAATGAAAGGAGTCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
3UTR CAA 72 bp TTGTTCTCTTTCTCCCTGTTTGTCCTTTGGTCATGTTaGAATGACATTACAACTGTGGGAAGAGACCTCAGG +
Preference number: 4 (lower is better)
Translates to: LFSFSLFVLWSC*NDITTVGRDLR
Trigger: CCTGAGGTCTCTTCCCACAGTTGTAATGTCATTCAAACATGACCAAAGGACAAACAGGGAGAAAGAGAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CCA 90 bp TGTTTGAATGACATTACAACTGTGGGAAGAGACCTCAGGAATTTCTCTCTGACTGGGGTGTTCTCAACCTaGTTGAACAGGTTGTTTTCT +
Preference number: 4 (lower is better)
Translates to: CLNDITTVGRDLRNFSLTGVFST*LNRLFS
Trigger: AGAAAACAACCTGTTCAACCAGGTTGAGAACACCCC...AGTCAGAGAGAAATTCCTGAGGTCTCTTCCCACAGTTGTAATGTCATTCAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS GCA 90 bp GCGATTCTTCAGCAGCAGCCTGTAGGCTCCAGGCCTGGCGTCCAGTaGCTCCTGCGCGCCCCCAACGATGATGGCAAGCAAGTTCCCGCC +
Preference number: 5 (lower is better)
Translates to: AILQQQPVGSRPGVQ*LLRAPNDDGKQVPA
Trigger: GGCGGGAACTTGCTTGCCATCATCGTTGGGGGCGCGCAGGAGGCACTGGACGCCAGGCCTGGAGCCTACAGGCTGCTGCTGAAGAATCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 90 bp AGGCTCCAGGCCTGGCGTCCAGTGCCTCCTGCGCGCCCCCAACGATaGTGGCAAGCAAGTTCCCGCCGCCCTTCCTGGACAGAATGTGAT +
Preference number: 5 (lower is better)
Translates to: RLQAWRPVPPARPQR*WQASSRRPSWTECD
Trigger: ATCACATTCTGTCCAGGAAGGGCGGCGGGAACTTGCTTGCCATCATCGTTGGGGGCGCGCAGGAGGCACTGGACGCCAGGCCTGGAGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CAA 90 bp GTAGGTGCCAGGGCAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGGGTCCACCTCCTCCCTaGAGGGCTGTGGTGTCATCT +
Preference number: 5 (lower is better)
Translates to: VGARADLAPRLCLRGKKQGPPPP*RAVVSS
Trigger: AGATGACACCACAGCCCTCAAGGGAGGAGGTGGACC...CTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTGCCCTGGCACCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 90 bp ATGGTGGTGATGGGCTGGCGGAAGGGCATGAGGCCAAAGCTGTACTaGAAGACACCTCTGCCGTGGAAGAGAGGGAGGGAGATGCCCATG +
Preference number: 5 (lower is better)
Translates to: MVVMGWRKGMRPKLY*KTPLPWKRGREMPM
Trigger: CATGGGCATCTCCCTCCCTCTCTTCCACGGCAGAGGTGTCTTCCAGTACAGCTTTGGCCTCATGCCCTTCCGCCAGCCCATCACCACCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CAA 90 bp AGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTGCTGGCTTCTCTTGCACAGCCTGATGAAGCCCTaGCGATTCTTCAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: SSIRDHAQGGLGCWLLLHSLMKP*RFFSSS
Trigger: GCTGCTGCTGAAGAATCGCAAGGGCTTCATCAGGCT...GTGCAAGAGAAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 90 bp ACTGGAAGACACCTCTGCCGTGGAAGAGAGGGAGGGAGATGCCCATaGTCTTCTGTAGCCGGTTCTGGATCCAGCGCAGCCAGGTACCAG +
Preference number: 5 (lower is better)
Translates to: TGRHLCRGREGGRCP*SSVAGSGSSAARYQ
Trigger: CTGGTACCTGGCTGCGCTGGATCCAGAACCGGCTACAGAAGATCATGGGCATCTCCCTCCCTCTCTTCCACGGCAGAGGTGTCTTCCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 90 bp TGGAAGAGAGGGAGGGAGATGCCCATGATCTTCTGTAGCCGGTTCTaGATCCAGCGCAGCCAGGTACCAGGGGTGTTCTCAACCTGGTTG +
Preference number: 5 (lower is better)
Translates to: WKRGREMPMIFCSRF*IQRSQVPGVFSTWL
Trigger: CAACCAGGTTGAGAACACCCCTGGTACCTGGCTGCGCTGGATCCAGAACCGGCTACAGAAGATCATGGGCATCTCCCTCCCTCTCTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 90 bp AGACAGGGAAATAATCCTTCATGTACTTCCATATGGCCAAGCGTCTaGAGAACTGGATGGGCCGGCCTCCCTGCCGCGGCTTGTCCCAGT +
Preference number: 5 (lower is better)
Translates to: RQGNNPSCTSIWPSV*RTGWAGLPAAACPS
Trigger: ACTGGGACAAGCCGCGGCAGGGAGGCCGGCCCATCCAGTTCTTCAGACGCTTGGCCATATGGAAGTACATGAAGGATTATTTCCCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CAA 90 bp CAGACTTGGCTCCCCGTCTCTGCCTCAGAGGGAAGAAGCAGCATCAGGGACCATTCCAGCTCAGCTGTCTaGACCAAAGAGACAGGGAAA +
Preference number: 5 (lower is better)
Translates to: QTWLPVSASEGRSSIRDHSSSAV*TKETGK
Trigger: TTTCCCTGTCTCTTTGGTCAAGACAGCTGAGCTGGA...ATGGTCCCTGATGCTGCTTCTTCCCTCTGAGGCAGAGACGGGGAGCCAAGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CAA 90 bp GAGGGAAGAAGCAGCATCAGGGACCATGCACAGGGAGGCCTGGGGTGCTGGCTTACCTGGTTGAACAGGTaGTTTTCTCCAAAGGAGAAG +
Preference number: 5 (lower is better)
Translates to: EGRSSIRDHAQGGLGCWLTWLNR*FSPKEK
Trigger: CTTCTCCTTTGGAGAAAACAACCTGTTCAACCAGGT...AAGCCAGCACCCCAGGCCTCCCTGTGCATGGTCCCTGATGCTGCTTCTTCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CAA 90 bp TTCCCCCATTCTACAGATGTGCAGACAGGCCAAGGACAGGGAGACCTCAGAGCTCTCCAAAGGAGAAGATaGGCACAAGAGCTGCCCCAT +
Preference number: 5 (lower is better)
Translates to: FPHSTDVQTGQGQGDLRALQRRR*AQELPH
Trigger: ATGGGGCAGCTCTTGTGCCAATCTTCTCCTTTGGAG...AGCTCTGAGGTCTCCCTGTCCTTGGCCTGTCTGCACATCTGTAGAATGGGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 90 bp TCTGGATCCAGCGCAGCCAGGTACCAGGGGTGTTCTCAACCTGGTTaGACAGGTTGTTTTCTCCAAAGGAGAAGATTGGCACAAGAGCTG +
Preference number: 5 (lower is better)
Translates to: SGSSAARYQGCSQPG*TGCFLQRRRLAQEL
Trigger: CAGCTCTTGTGCCAATCTTCTCCTTTGGAGAAAACAACCTGTTCAACCAGGTTGAGAACACCCCTGGTACCTGGCTGCGCTGGATCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS-3UTR CAA 90 bp GACAGACTCCTTTCATTTATTGAGGTAACATGTACAGTGCTGCCCTTCAGTGCCACGTTGAACTTGAGTTaGTGCTCCTCAAAGAGCTTG +
Preference number: 5 (lower is better)
Translates to: DRLLSFIEVTCTVLPFSATLNLS*CSSKSL
Trigger: CAAGCTCTTTGAGGAGCACAAACTCAAGTTCAACGT...GGCACTGAAGGGCAGCACTGTACATGTTACCTCAATAAATGAAAGGAGTCTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS GCA 72 bp CAGCAGCAGCCTGTAGGCTCCAGGCCTGGCGTCCAGTaGCTCCTGCGCGCCCCCAACGATGATGGCAAGCAA +
Preference number: 6 (lower is better)
Translates to: QQQPVGSRPGVQ*LLRAPNDDGKQ
Trigger: TTGCTTGCCATCATCGTTGGGGGCGCGCAGGAGGCACTGGACGCCAGGCCTGGAGCCTACAGGCTGCTGCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS GCA 72 bp CGGTCCACCTCCTCCCTTGAGGGCTGTGGTGTCATCTaGACCTCGATGGGCTTCCCCACTATGGTGGTGATG +
Preference number: 6 (lower is better)
Translates to: RSTSSLEGCGVI*TSMGFPTMVVM
Trigger: CATCACCACCATAGTGGGGAAGCCCATCGAGGTGCAGATGACACCACAGCCCTCAAGGGAGGAGGTGGACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 72 bp ATGGGCTGGCGGAAGGGCATGAGGCCAAAGCTGTACTaGAAGACACCTCTGCCGTGGAAGAGAGGGAGGGAG +
Preference number: 6 (lower is better)
Translates to: MGWRKGMRPKLY*KTPLPWKRGRE
Trigger: CTCCCTCCCTCTCTTCCACGGCAGAGGTGTCTTCCAGTACAGCTTTGGCCTCATGCCCTTCCGCCAGCCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 72 bp TTCATGTACTTCCATATGGCCAAGCGTCTGAAGAACTaGATGGGCCGGCCTCCCTGCCGCGGCTTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: FMYFHMAKRLKN*MGRPPCRGLSQ
Trigger: CTGGGACAAGCCGCGGCAGGGAGGCCGGCCCATCCAGTTCTTCAGACGCTTGGCCATATGGAAGTACATGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 72 bp GGGAGGGAGATGCCCATGATCTTCTGTAGCCGGTTCTaGATCCAGCGCAGCCAGGTACCAGGGGTGTTCTCA +
Preference number: 6 (lower is better)
Translates to: GREMPMIFCSRF*IQRSQVPGVFS
Trigger: TGAGAACACCCCTGGTACCTGGCTGCGCTGGATCCAGAACCGGCTACAGAAGATCATGGGCATCTCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 72 bp ACCTCGATGGGCTTCCCCACTATGGTGGTGATGGGCTaGCGGAAGGGCATGAGGCCAAAGCTGTACTGGAAG +
Preference number: 6 (lower is better)
Translates to: TSMGFPTMVVMG*RKGMRPKLYWK
Trigger: CTTCCAGTACAGCTTTGGCCTCATGCCCTTCCGCCAGCCCATCACCACCATAGTGGGGAAGCCCATCGAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 72 bp GCAAGCAAGTTCCCGCCGCCCTTCCTGGACAGAATGTaGTCGGCACTCACCTTTTCTGATGAGACCAGCCCC +
Preference number: 6 (lower is better)
Translates to: ASKFPPPFLDRM*SALTFSDETSP
Trigger: GGGGCTGGTCTCATCAGAAAAGGTGAGTGCCGATCACATTCTGTCCAGGAAGGGCGGCGGGAACTTGCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 72 bp AATAATCCTTCATGTACTTCCATATGGCCAAGCGTCTaGAGAACTGGATGGGCCGGCCTCCCTGCCGCGGCT +
Preference number: 6 (lower is better)
Translates to: NNPSCTSIWPSV*RTGWAGLPAAA
Trigger: AGCCGCGGCAGGGAGGCCGGCCCATCCAGTTCTTCAGACGCTTGGCCATATGGAAGTACATGAAGGATTATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS TCA 72 bp AGCGCAGCCAGGTACCAGGGGTGTTCTCAACCTGGTTaGACAGGTTGTTTTCTCCAAAGGAGAAGATTGGCA +
Preference number: 6 (lower is better)
Translates to: SAARYQGCSQPG*TGCFLQRRRLA
Trigger: TGCCAATCTTCTCCTTTGGAGAAAACAACCTGTTCAACCAGGTTGAGAACACCCCTGGTACCTGGCTGCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CCA 72 bp ATCCAGCGCAGCCAGGTACCAGGGGTGTTCTCAACCTaGTTGAACAGGTTGTTTTCTCCAAAGGAGAAGATT +
Preference number: 6 (lower is better)
Translates to: IQRSQVPGVFST*LNRLFSPKEKI
Trigger: AATCTTCTCCTTTGGAGAAAACAACCTGTTCAACCAGGTTGAGAACACCCCTGGTACCTGGCTGCGCTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8
CDS CAA 72 bp TCCAGATGCTGGTCCTCAGGGACGTTGAACTTGAGTTaGTGCTCCTCAAAGAGCTTGCAGAGCTCCTTGATA +
Preference number: 6 (lower is better)
Translates to: SRCWSSGTLNLS*CSSKSLQSSLI
Trigger: TATCAAGGAGCTCTGCAAGCTCTTTGAGGAGCACAAACTCAAGTTCAACGTCCCTGAGGACCAGCATCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064231.8