RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MOB3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003348

Ensembl transcript IDs: ENSMUST00000003438.11, ENSMUST00000218090.2, ENSMUST00000220138.2

Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTGGCTCTCCCAGGCTCCTCCATGGGTGTGGGGGTCACACATGTaGACTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACC +
Preference number: 1 (lower is better)
Translates to: VWLSQAPPWVWGSHM*THAHVANTSPLCRT
Trigger: GGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAGTGCACATGTGTGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 90 bp CTGTGTAGACCAGGCCGGCCTCGAATTGACAGATCTGCCTGTCACTaGCTCCTGACTAGGATCAAAGGCCTGTGCCACCCTGCCTGGCTC +
Preference number: 1 (lower is better)
Translates to: LCRPGRPRIDRSACH*LLTRIKGLCHPAWL
Trigger: GAGCCAGGCAGGGTGGCACAGGCCTTTGATCCTAGTCAGGAGGCAGTGACAGGCAGATCTGTCAATTCGAGGCCGGCCTGGTCTACACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 90 bp AGCCAGCCGTGTTCACAACAGAGCCAGTCTGTGTGTGCGTTTGTGTaGCTGCGCACTGGGGTAGCCCATGGCTGCCTGATTCTCCCTGTC +
Preference number: 1 (lower is better)
Translates to: SQPCSQQSQSVCAFV*LRTGVAHGCLILPV
Trigger: GACAGGGAGAATCAGGCAGCCATGGGCTACCCCAGTGCGCAGCCACACAAACGCACACACAGACTGGCTCTGTTGTGAACACGGCTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 90 bp GCCTCCTCTCGGAGGCCATGGCACATACAGTGTAAACCCAGTGGCTaGAAGCACAGTGTCCAGGTTCAAGTTCAGGCCCTGGATGCCGGC +
Preference number: 1 (lower is better)
Translates to: ASSRRPWHIQCKPSG*KHSVQVQVQALDAG
Trigger: GCCGGCATCCAGGGCCTGAACTTGAACCTGGACACTGTGCTTTCAGCCACTGGGTTTACACTGTATGTGCCATGGCCTCCGAGAGGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 90 bp GACCAGGCCGGCCTCGAATTGACAGATCTGCCTGTCACTGCCTCCTaGCTAGGATCAAAGGCCTGTGCCACCCTGCCTGGCTCCTTTACA +
Preference number: 1 (lower is better)
Translates to: DQAGLELTDLPVTAS*LGSKACATLPGSFT
Trigger: TGTAAAGGAGCCAGGCAGGGTGGCACAGGCCTTTGATCCTAGTCAGGAGGCAGTGACAGGCAGATCTGTCAATTCGAGGCCGGCCTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 90 bp CCAGATGAGCTGGCTGACACTTGGGGGCAGAGGCAGGTGGATCTGTaGGTTGGAGGCCAGTCTGGCCTACAGAATAAGTTCCAGGACAGC +
Preference number: 1 (lower is better)
Translates to: PDELADTWGQRQVDL*VGGQSGLQNKFQDS
Trigger: GCTGTCCTGGAACTTATTCTGTAGGCCAGACTGGCCTCCAACTCACAGATCCACCTGCCTCTGCCCCCAAGTGTCAGCCAGCTCATCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 90 bp GAGAGGACCACTTTATTCTTAGGCTGGCACAGAGGTGGGAGTGAATaGGGCAGGTGGACCCCTCCCTGGGCTGCTGGGATTTGGCAAGGT +
Preference number: 1 (lower is better)
Translates to: ERTTLFLGWHRGGSE*GRWTPPWAAGIWQG
Trigger: ACCTTGCCAAATCCCAGCAGCCCAGGGAGGGGTCCACCTGCCTCATTCACTCCCACCTCTGTGCCAGCCTAAGAATAAAGTGGTCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 90 bp ACACCCAATACTGGGAGTCCTGCCCTGGGGGTGCTGGGGGTGGCATaGCACATTAGTTCATCTTTGGAGGTATGCTGGCTGCCTATGTGG +
Preference number: 1 (lower is better)
Translates to: TPNTGSPALGVLGVA*HISSSLEVCWLPMW
Trigger: CCACATAGGCAGCCAGCATACCTCCAAAGATGAACTAATGTGCCATGCCACCCCCAGCACCCCCAGGGCAGGACTCCCAGTATTGGGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 90 bp TATGGAGAGGACCACTTTATTCTTAGGCTGGCACAGAGGTGGGAGTaGATGAGGCAGGTGGACCCCTCCCTGGGCTGCTGGGATTTGGCA +
Preference number: 1 (lower is better)
Translates to: YGEDHFILRLAQRWE*MRQVDPSLGCWDLA
Trigger: TGCCAAATCCCAGCAGCCCAGGGAGGGGTCCACCTGCCTCATTCACTCCCACCTCTGTGCCAGCCTAAGAATAAAGTGGTCCTCTCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 90 bp AAGGAAATGAAGCCAGCCGTGTTCACAACAGAGCCAGTCTGTGTGTaGGTTTGTGTGGCTGCGCACTGGGGTAGCCCATGGCTGCCTGAT +
Preference number: 1 (lower is better)
Translates to: KEMKPAVFTTEPVCV*VCVAAHWGSPWLPD
Trigger: ATCAGGCAGCCATGGGCTACCCCAGTGCGCAGCCACACAAACGCACACACAGACTGGCTCTGTTGTGAACACGGCTGGCTTCATTTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 90 bp CTGCAGAGTCTTGGGATCATAGGCATGCAGTGTATGCACCCTTCCTaGCCTACAAAGACCCCCAGAACACCCAATACTGGGAGTCCTGCC +
Preference number: 1 (lower is better)
Translates to: LQSLGIIGMQCMHPS*PTKTPRTPNTGSPA
Trigger: GGCAGGACTCCCAGTATTGGGTGTTCTGGGGGTCTTTGTAGGTCAGGAAGGGTGCATACACTGCATGCCTATGATCCCAAGACTCTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 90 bp TGGAGGTCAGGGTGGCCTCAAGTTTATAGCAATCCTCCTTGCAGCTaGCTGCAGAGTCTTGGGATCATAGGCATGCAGTGTATGCACCCT +
Preference number: 1 (lower is better)
Translates to: WRSGWPQVYSNPPCS*LQSLGIIGMQCMHP
Trigger: AGGGTGCATACACTGCATGCCTATGATCCCAAGACTCTGCAGGCAGCTGCAAGGAGGATTGCTATAAACTTGAGGCCACCCTGACCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 90 bp GTGCTGGGGGTGGCATGGCACATTAGTTCATCTTTGGAGGTATGCTaGCTGCCTATGTGGTCACCCACACACAATGTGGCTGTAAACAGA +
Preference number: 1 (lower is better)
Translates to: VLGVAWHISSSLEVC*LPMWSPTHNVAVNR
Trigger: TCTGTTTACAGCCACATTGTGTGTGGGTGACCACATAGGCAGCCAGCATACCTCCAAAGATGAACTAATGTGCCATGCCACCCCCAGCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 90 bp AATGGCCATGAGGCTCAAAAGTTGGAGCTGGGAACAGTCATATTCTaGTACACCCTCCATGGCATGACAGACAGGGACCTGCTGGAGTTT +
Preference number: 1 (lower is better)
Translates to: NGHEAQKLELGTVIF*YTLHGMTDRDLLEF
Trigger: AAACTCCAGCAGGTCCCTGTCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTTTGAGCCTCATGGCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 90 bp GCATGGCACATTAGTTCATCTTTGGAGGTATGCTGGCTGCCTATGTaGTCACCCACACACAATGTGGCTGTAAACAGAAGACATCTGGTG +
Preference number: 1 (lower is better)
Translates to: AWHISSSLEVCWLPM*SPTHNVAVNRRHLV
Trigger: CACCAGATGTCTTCTGTTTACAGCCACATTGTGTGTGGGTGACCACATAGGCAGCCAGCATACCTCCAAAGATGAACTAATGTGCCATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR TCA 90 bp CTGGGCACCCTATGTCTGGCTCTCCCAGGCTCCTCCATGGGTGTGGGGGTCACATTCCAGGTTGGCAAGTaGGGGACAAAGCTGTCAGGG +
Preference number: 2 (lower is better)
Translates to: LGTLCLALPGSSMGVGVTFQVGK*GTKLSG
Trigger: CCCTGACAGCTTTGTCCCTCACTTGCCAACCTGGAA...TGTGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGACATAGGGTGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp CTGGGCACCCTATGTCTGGCTCTCCCAGGCTCCTCCATGGGTGTGGGGGTCACACCTCCCCTTCCAGGTTaGCAAGTGAGGGACAAAGCT +
Preference number: 2 (lower is better)
Translates to: LGTLCLALPGSSMGVGVTPPLPG*QVRDKA
Trigger: AGCTTTGTCCCTCACTTGCCAACCTGGAAGGGGAGG...TGTGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGACATAGGGTGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR TCA 90 bp CCAGATCCTGCCTCCTCTCGGAGGCCATGGCACATACAGTGTAAACCCAGTGGCAGCGTGCCATGCTCCTaGGACACGAGCTGCACACAG +
Preference number: 2 (lower is better)
Translates to: PDPASSRRPWHIQCKPSGSVPCS*DTSCTQ
Trigger: CTGTGTGCAGCTCGTGTCTCAGGAGCATGGCACGCT...GCCACTGGGTTTACACTGTATGTGCCATGGCCTCCGAGAGGAGGCAGGATCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR TCA 90 bp AGGCTCCTCCATGGGTGTGGGGGTCACACATGTGCACTCACGCTCACGTGGCAAAGACCCTGGCTGGCCTaGCCATTACTGTGGAGGTCA +
Preference number: 2 (lower is better)
Translates to: RLLHGCGGHTCALTLTWQRPWLA*PLLWRS
Trigger: TGACCTCCACAGTAATGGTCAGGCCAGCCAGGGTCT...TTGCCACGTGAGCGTGAGTGCACATGTGTGACCCCCACACCCATGGAGGAGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR GCA 90 bp TGTGCACTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGCGGAAGCTGTGGTCTTaGTGCTCCTCAGACAGTGGC +
Preference number: 2 (lower is better)
Translates to: CALTLTWQTPPHCAEPYRRKLWS*CSSDSG
Trigger: GCCACTGTCTGAGGAGCAGCAAGACCACAGCTTCCG...CCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAGTGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp CTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTCTGCCCTGGGGGTGCTaGGGGTGGCATGGCACATTA +
Preference number: 2 (lower is better)
Translates to: LTLTWQTPPHCAEPYRFCLPWGC*GWHGTL
Trigger: TAATGTGCCATGCCACCCCCAGCACCCCCAGGGCAG...ACAAAACCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR TCA 90 bp ATATTCTGCTACACCCTCCATGGCATGACAGACAGGGACCTGCTGGAGTTTGGTAGGCAGGTGGATCTGTaGGTTGGAGGCCAGTCTGGC +
Preference number: 2 (lower is better)
Translates to: IFCYTLHGMTDRDLLEFGRQVDL*VGGQSG
Trigger: GCCAGACTGGCCTCCAACTCACAGATCCACCTGCCT...ACCAAACTCCAGCAGGTCCCTGTCTGTCATGCCATGGAGGGTGTAGCAGAATAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp GTAAACAGAAGACATCTGGTGGCCCCTCCCCTTCCAGGTTGGCAAGTGAGGGACTCCTCTCGGAGGCCATaGCACATACAGTGTAAACCC +
Preference number: 2 (lower is better)
Translates to: VNRRHLVAPPLPGWQVRDSSRRP*HIQCKP
Trigger: GGGTTTACACTGTATGTGCCATGGCCTCCGAGAGGA...GTCCCTCACTTGCCAACCTGGAAGGGGAGGGGCCACCAGATGTCTTCTGTTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR GCA 90 bp CTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTAATCCTCCTTGCAGCTaGCTGCAGAGTCTTGGGATC +
Preference number: 2 (lower is better)
Translates to: LTLTWQTPPHCAEPYRFCNPPCS*LQSLGI
Trigger: GATCCCAAGACTCTGCAGGCAGCTGCAAGGAGGATT...ACAAAACCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp GAGGCTCAAAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCCAGGGCAGAGAGCCATaGAGAAGGGACAAGTGGTGG +
Preference number: 2 (lower is better)
Translates to: EAQKLELGTVIFCYTLHGQGREP*RRDKWW
Trigger: CCACCACTTGTCCCTTCTCCATGGCTCTCTGCCCTG...GCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTTTGAGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp AAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCATGACAGAGGGGGCAGAGGCAGGTaGATCTGTGAGTTGGAGGCC +
Preference number: 2 (lower is better)
Translates to: KVGAGNSHILLHPPWHDRGGRGR*ICELEA
Trigger: GGCCTCCAACTCACAGATCCACCTGCCTCTGCCCCC...TCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR GCA 90 bp ACTGCAGATCTAAGGGTGGGAGCCACAAGTGAATTCATTACTGGATCCCAGGTTAGTGGCTCCAGATCCTaGCTCCTCTCGGAGGCCATG +
Preference number: 2 (lower is better)
Translates to: TADLRVGATSEFITGSQVSGSRS*LLSEAM
Trigger: CATGGCCTCCGAGAGGAGGCAGGATCTGGAGCCACT...AACCTGGGATCCAGTAATGAATTCACTTGTGGCTCCCACCCTTAGATCTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp CTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTAGAAGGGACAAGTGGTaGTTAGCAGTGGCTCCAGAT +
Preference number: 2 (lower is better)
Translates to: LTLTWQTPPHCAEPYRFCRRDKW*LAVAPD
Trigger: ATCTGGAGCCACTGCTAACCACCACTTGTCCCTTCT...ACAAAACCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp CTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTGTGCTGGGGGTGGCATaGCACATTAGTTCATCTTTG +
Preference number: 2 (lower is better)
Translates to: LTLTWQTPPHCAEPYRFCVLGVA*HISSSL
Trigger: CAAAGATGAACTAATGTGCCATGCCACCCCCAGCAC...ACAAAACCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp TCTGGCCTACAGAATAAGTTCCAGGACAGCCAGGGCTACATAGTAAGAGCCTGTATTCTCCCTGTCCCCTaGGCACCCTATGTCTGGCTC +
Preference number: 2 (lower is better)
Translates to: SGLQNKFQDSQGYIVRACILPVP*APYVWL
Trigger: GAGCCAGACATAGGGTGCCCAGGGGACAGGGAGAAT...ACAGGCTCTTACTATGTAGCCCTGGCTGTCCTGGAACTTATTCTGTAGGCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR TCA 90 bp TCCTCCTTGCAGCTGCCTGCAGAGTCTTGGGATCATAGGCATGCAGTGTATGCATGTAAACCCAGTGGCTaGAAGCACAGTGTCCAGGTT +
Preference number: 2 (lower is better)
Translates to: SSLQLPAESWDHRHAVYACKPSG*KHSVQV
Trigger: AACCTGGACACTGTGCTTTCAGCCACTGGGTTTACA...TGCATACACTGCATGCCTATGATCCCAAGACTCTGCAGGCAGCTGCAAGGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp TCTGGCCTACAGAATAAGTTCCAGGACAGCCAGGGCTACATAGTAAGAGCCTGTTGGAGAAGGGACAAGTaGTGGTTAGCAGTGGCTCCA +
Preference number: 2 (lower is better)
Translates to: SGLQNKFQDSQGYIVRACWRRDK*WLAVAP
Trigger: TGGAGCCACTGCTAACCACCACTTGTCCCTTCTCCA...ACAGGCTCTTACTATGTAGCCCTGGCTGTCCTGGAACTTATTCTGTAGGCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CCA 90 bp AAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCATGACAGAGGTGGATCTGTGAGTTaGAGGCCAGTCTGGCCTACA +
Preference number: 2 (lower is better)
Translates to: KVGAGNSHILLHPPWHDRGGSVS*RPVWPT
Trigger: TGTAGGCCAGACTGGCCTCCAACTCACAGATCCACC...TCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR TCA 90 bp ACTGCAGATCTAAGGGTGGGAGCCACAAGTGAATTCATTACTGGATCCCAGGTTAAGACAATCTTGTTATaGGACCCTGGCTGGCCTGAC +
Preference number: 2 (lower is better)
Translates to: TADLRVGATSEFITGSQVKTILL*DPGWPD
Trigger: GTCAGGCCAGCCAGGGTCTCATAACAAGATTGTCTT...AACCTGGGATCCAGTAATGAATTCACTTGTGGCTCCCACCCTTAGATCTGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GGGGTAGCCCATGGCTGCCTGATTCTCCCTGTCCCCTaGGCACCCTATGTCTGGCTCTCCCAGGCTCCTCCA +
Preference number: 3 (lower is better)
Translates to: GVAHGCLILPVP*APYVWLSQAPP
Trigger: TGGAGGAGCCTGGGAGAGCCAGACATAGGGTGCCCAGGGGACAGGGAGAATCAGGCAGCCATGGGCTACCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 72 bp GCGTTTGTGTGGCTGCGCACTGGGGTAGCCCATGGCTaGCTGATTCTCCCTGTCCCCTGGGCACCCTATGTC +
Preference number: 3 (lower is better)
Translates to: AFVWLRTGVAHG*LILPVPWAPYV
Trigger: GACATAGGGTGCCCAGGGGACAGGGAGAATCAGGCAGCCATGGGCTACCCCAGTGCGCAGCCACACAAACGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp TGCCTGATTCTCCCTGTCCCCTGGGCACCCTATGTCTaGCTCTCCCAGGCTCCTCCATGGGTGTGGGGGTCA +
Preference number: 3 (lower is better)
Translates to: CLILPVPWAPYV*LSQAPPWVWGS
Trigger: TGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGACATAGGGTGCCCAGGGGACAGGGAGAATCAGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GTGTGCGTTTGTGTGGCTGCGCACTGGGGTAGCCCATaGCTGCCTGATTCTCCCTGTCCCCTGGGCACCCTA +
Preference number: 3 (lower is better)
Translates to: VCVCVAAHWGSP*LPDSPCPLGTL
Trigger: TAGGGTGCCCAGGGGACAGGGAGAATCAGGCAGCCATGGGCTACCCCAGTGCGCAGCCACACAAACGCACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 72 bp TCCCAGGCTCCTCCATGGGTGTGGGGGTCACACATGTaGACTCACGCTCACGTGGCAAACACCTCCCCACTG +
Preference number: 3 (lower is better)
Translates to: SQAPPWVWGSHM*THAHVANTSPL
Trigger: CAGTGGGGAGGTGTTTGCCACGTGAGCGTGAGTGCACATGTGTGACCCCCACACCCATGGAGGAGCCTGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp CCCTATGTCTGGCTCTCCCAGGCTCCTCCATGGGTGTaGGGGTCACACATGTGCACTCACGCTCACGTGGCA +
Preference number: 3 (lower is better)
Translates to: PYVWLSQAPPWV*GSHMCTHAHVA
Trigger: TGCCACGTGAGCGTGAGTGCACATGTGTGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGACATAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp TGGGCACCCTATGTCTGGCTCTCCCAGGCTCCTCCATaGGTGTGGGGGTCACACATGTGCACTCACGCTCAC +
Preference number: 3 (lower is better)
Translates to: WAPYVWLSQAPP*VWGSHMCTHAH
Trigger: GTGAGCGTGAGTGCACATGTGTGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGACATAGGGTGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GAGCCAGTCTGTGTGTGCGTTTGTGTGGCTGCGCACTaGGGTAGCCCATGGCTGCCTGATTCTCCCTGTCCC +
Preference number: 3 (lower is better)
Translates to: EPVCVCVCVAAH*GSPWLPDSPCP
Trigger: GGGACAGGGAGAATCAGGCAGCCATGGGCTACCCCAGTGCGCAGCCACACAAACGCACACACAGACTGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GCTGAAAGCACAGTGTCCAGGTTCAAGTTCAGGCCCTaGATGCCGGCAAGGGGACGGGTTAGAGTCAGGGCC +
Preference number: 3 (lower is better)
Translates to: AESTVSRFKFRP*MPARGRVRVRA
Trigger: GGCCCTGACTCTAACCCGTCCCCTTGCCGGCATCCAGGGCCTGAACTTGAACCTGGACACTGTGCTTTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 72 bp CCAGGCCGGCCTCGAATTGACAGATCTGCCTGTCACTaGCTCCTGACTAGGATCAAAGGCCTGTGCCACCCT +
Preference number: 3 (lower is better)
Translates to: PGRPRIDRSACH*LLTRIKGLCHP
Trigger: AGGGTGGCACAGGCCTTTGATCCTAGTCAGGAGGCAGTGACAGGCAGATCTGTCAATTCGAGGCCGGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 72 bp AAGCCAGCCGTGTTCACAACAGAGCCAGTCTGTGTGTaGGTTTGTGTGGCTGCGCACTGGGGTAGCCCATGG +
Preference number: 3 (lower is better)
Translates to: KPAVFTTEPVCV*VCVAAHWGSPW
Trigger: CCATGGGCTACCCCAGTGCGCAGCCACACAAACGCACACACAGACTGGCTCTGTTGTGAACACGGCTGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp TGTCAGGGCAGAGAGCCATGGAGAAGGGACAAGTGGTaGTTAGCAGTGGCTCCAGATCCTGCCTCCTCTCGG +
Preference number: 3 (lower is better)
Translates to: CQGREPWRRDKW*LAVAPDPASSR
Trigger: CCGAGAGGAGGCAGGATCTGGAGCCACTGCTAACCACCACTTGTCCCTTCTCCATGGCTCTCTGCCCTGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp CCTCCATGGCATGACAGACAGGGACCTGCTGGAGTTTaGTCCTGTGGCCCACAGGGGCCACACAACACACAT +
Preference number: 3 (lower is better)
Translates to: PPWHDRQGPAGV*SCGPQGPHNTH
Trigger: ATGTGTGTTGTGTGGCCCCTGTGGGCCACAGGACCAAACTCCAGCAGGTCCCTGTCTGTCATGCCATGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp AACAGAAGACATCTGGTGGCCCCTCCCCTTCCAGGTTaGCAAGTGAGGGACAAAGCTGTCAGGGCAGAGAGC +
Preference number: 3 (lower is better)
Translates to: NRRHLVAPPLPG*QVRDKAVRAES
Trigger: GCTCTCTGCCCTGACAGCTTTGTCCCTCACTTGCCAACCTGGAAGGGGAGGGGCCACCAGATGTCTTCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GAACACCCAATACTGGGAGTCCTGCCCTGGGGGTGCTaGGGGTGGCATGGCACATTAGTTCATCTTTGGAGG +
Preference number: 3 (lower is better)
Translates to: EHPILGVLPWGC*GWHGTLVHLWR
Trigger: CCTCCAAAGATGAACTAATGTGCCATGCCACCCCCAGCACCCCCAGGGCAGGACTCCCAGTATTGGGTGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CAA 90 bp GCAGTGTATGCACCCTTCCTGACCTACAAAGACCCCCAGAACACCCAATACTGGGCGGAAGCTGTGGTCTaGCTGCTCCTCAGACAGTGG +
Preference number: 3 (lower is better)
Translates to: AVYAPFLTYKDPQNTQYWAEAVV*LLLRQW
Trigger: CCACTGTCTGAGGAGCAGCAAGACCACAGCTTCCGC...CCAGTATTGGGTGTTCTGGGGGTCTTTGTAGGTCAGGAAGGGTGCATACACTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 72 bp CTGGCTGACACTTGGGGGCAGAGGCAGGTGGATCTGTaGGTTGGAGGCCAGTCTGGCCTACAGAATAAGTTC +
Preference number: 3 (lower is better)
Translates to: LADTWGQRQVDL*VGGQSGLQNKF
Trigger: GAACTTATTCTGTAGGCCAGACTGGCCTCCAACTCACAGATCCACCTGCCTCTGCCCCCAAGTGTCAGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 72 bp ACTTTATTCTTAGGCTGGCACAGAGGTGGGAGTGAATaGGGCAGGTGGACCCCTCCCTGGGCTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: TLFLGWHRGGSE*GRWTPPWAAGI
Trigger: AATCCCAGCAGCCCAGGGAGGGGTCCACCTGCCTCATTCACTCCCACCTCTGTGCCAGCCTAAGAATAAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GCAAGTGAGGGACAAAGCTGTCAGGGCAGAGAGCCATaGAGAAGGGACAAGTGGTGGTTAGCAGTGGCTCCA +
Preference number: 3 (lower is better)
Translates to: ASEGQSCQGREP*RRDKWWLAVAP
Trigger: TGGAGCCACTGCTAACCACCACTTGTCCCTTCTCCATGGCTCTCTGCCCTGACAGCTTTGTCCCTCACTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CAA 90 bp AAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCATGACAGAGGGACCTGCTGGAGTTaGGTCCTGTGGCCCACAGGG +
Preference number: 3 (lower is better)
Translates to: KVGAGNSHILLHPPWHDRGTCWS*VLWPTG
Trigger: CCCTGTGGGCCACAGGACCAAACTCCAGCAGGTCCC...TCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 72 bp CGGAGGCCATGGCACATACAGTGTAAACCCAGTGGCTaGAAGCACAGTGTCCAGGTTCAAGTTCAGGCCCTG +
Preference number: 3 (lower is better)
Translates to: RRPWHIQCKPSG*KHSVQVQVQAL
Trigger: CAGGGCCTGAACTTGAACCTGGACACTGTGCTTTCAGCCACTGGGTTTACACTGTATGTGCCATGGCCTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 72 bp TGGGAACAGTCATATTCTGCTACACCCTCCATGGCATaGCAGACAGGGACCTGCTGGAGTTTGGTCCTGTGG +
Preference number: 3 (lower is better)
Translates to: WEQSYSATPSMA*QTGTCWSLVLW
Trigger: CCACAGGACCAAACTCCAGCAGGTCCCTGTCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR TCA 72 bp CTTGGGATCATAGGCATGCAGTGTATGCACCCTTCCTaGCCTACAAAGACCCCCAGAACACCCAATACTGGG +
Preference number: 3 (lower is better)
Translates to: LGIIGMQCMHPS*PTKTPRTPNTG
Trigger: CCCAGTATTGGGTGTTCTGGGGGTCTTTGTAGGTCAGGAAGGGTGCATACACTGCATGCCTATGATCCCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 72 bp GGGTGGCCTCAAGTTTATAGCAATCCTCCTTGCAGCTaGCTGCAGAGTCTTGGGATCATAGGCATGCAGTGT +
Preference number: 3 (lower is better)
Translates to: GWPQVYSNPPCS*LQSLGIIGMQC
Trigger: ACACTGCATGCCTATGATCCCAAGACTCTGCAGGCAGCTGCAAGGAGGATTGCTATAAACTTGAGGCCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR GCA 72 bp GAGGCTCAAAAGTTGGAGCTGGGAACAGTCATATTCTaGTACACCCTCCATGGCATGACAGACAGGGACCTG +
Preference number: 3 (lower is better)
Translates to: EAQKLELGTVIF*YTLHGMTDRDL
Trigger: CAGGTCCCTGTCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTTTGAGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp CAGAGGTCTCAGGGAATGGCCATGAGGCTCAAAAGTTaGAGCTGGGAACAGTCATATTCTGCTACACCCTCC +
Preference number: 3 (lower is better)
Translates to: QRSQGMAMRLKS*SWEQSYSATPS
Trigger: GGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTTTGAGCCTCATGGCCATTCCCTGAGACCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CAA 90 bp AAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCATGACAGAAGGTGGATCTGTGAGTaGGAGGCCAGTCTGGCCTAC +
Preference number: 3 (lower is better)
Translates to: KVGAGNSHILLHPPWHDRRWICE*EASLAY
Trigger: GTAGGCCAGACTGGCCTCCAACTCACAGATCCACCT...TCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CCA 72 bp GTGGCATGGCACATTAGTTCATCTTTGGAGGTATGCTaGCTGCCTATGTGGTCACCCACACACAATGTGGCT +
Preference number: 3 (lower is better)
Translates to: VAWHISSSLEVC*LPMWSPTHNVA
Trigger: AGCCACATTGTGTGTGGGTGACCACATAGGCAGCCAGCATACCTCCAAAGATGAACTAATGTGCCATGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR-3UTR CAA 90 bp GAGGCTCAAAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCCACATTAGTTCATCTTaGGAGGTATGCTGGCTGCCT +
Preference number: 3 (lower is better)
Translates to: EAQKLELGTVIFCYTLHGHISSS*EVCWLP
Trigger: AGGCAGCCAGCATACCTCCAAAGATGAACTAATGTG...GCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTTTGAGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp ACCCAGTGGCTGAAAGCACAGTGTCCAGGTTCAAGTTCAGGCCCTGGATGCCGGGTCCATGTAGCGGGGTaGGGACAGCGCCGTGGGCTT +
Preference number: 4 (lower is better)
Translates to: TQWLKAQCPGSSSGPGCRVHVAG*GQRRGL
Trigger: AAGCCCACGGCGCTGTCCGCACCCCGCTACATGGAC...CCGGCATCCAGGGCCTGAACTTGAACCTGGACACTGTGCTTTCAGCCACTGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp CTGGGCACCCTATGTCTGGCTCTCCCAGGCTCCTCCATGGGTGTGGGGGTCACATGGTGGATGTACACGTaGACGAACACACGGAACAGC +
Preference number: 4 (lower is better)
Translates to: LGTLCLALPGSSMGVGVTWWMYT*TNTRNS
Trigger: GCTGTTCCGTGTGTTCGTGCACGTGTACATCCACCA...TGTGACCCCCACACCCATGGAGGAGCCTGGGAGAGCCAGACATAGGGTGCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp ACCCAGTGGCTGAAAGCACAGTGTCCAGGTTCAAGTTCAGGCCCTGGATGCCGGCAGGATCTTGCGCACTaGCTGCAGGAAGGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: TQWLKAQCPGSSSGPGCRQDLAH*LQEGLG
Trigger: CCCAAGACCTTCCTGCAGGCAGTGCGCAAGATCCTG...CCGGCATCCAGGGCCTGAACTTGAACCTGGACACTGTGCTTTCAGCCACTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp AGTGAGCGTGCCATGCTCCTGAGACACGAGCTGCACACAGTTGTCTCCCCAAGTGTTCGAAGCGCTGCGTaGCAGGCTCGAACTTGCGTT +
Preference number: 4 (lower is better)
Translates to: SERAMLLRHELHTVVSPSVRSAA*QARTCV
Trigger: AACGCAAGTTCGAGCCTGGCACGCAGCGCTTCGAAC...ACTTGGGGAGACAACTGTGTGCAGCTCGTGTCTCAGGAGCATGGCACGCTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CCA 90 bp CCAGATCCTGCCTCCTCTCGGAGGCCATGGCACATACAGTGTAAACCCAGTGGCGTTGAGATCTTCACCTaGCGGCAGCTGCACAGCCAA +
Preference number: 4 (lower is better)
Translates to: PDPASSRRPWHIQCKPSGVEIFT*RQLHSQ
Trigger: TTGGCTGTGCAGCTGCCGCCAGGTGAAGATCTCAAC...GCCACTGGGTTTACACTGTATGTGCCATGGCCTCCGAGAGGAGGCAGGATCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp TGCCATGCTCCTGAGACACGAGCTGCACACAGTTGTCTCCCCAAGTCTCAGCGGAAGAAATCCACCACGTaGACGGCAACCCAGTCGTTG +
Preference number: 4 (lower is better)
Translates to: CHAPETRAAHSCLPKSQRKKSTT*TATQSL
Trigger: CAACGACTGGGTTGCCGTGCACGTGGTGGATTTCTT...CCGCTGAGACTTGGGGAGACAACTGTGTGCAGCTCGTGTCTCAGGAGCATGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp CCAGATCCTGCCTCCTCTCGGAGGCCATGGCACATACAGTGTAAACCCAGTGGCATCTTGCGCACTGCCTaGAGGAAGGTCTTGGGGAAT +
Preference number: 4 (lower is better)
Translates to: PDPASSRRPWHIQCKPSGILRTA*RKVLGN
Trigger: ATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGAT...GCCACTGGGTTTACACTGTATGTGCCATGGCCTCCGAGAGGAGGCAGGATCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp CTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTGCCTTGACAGGATCTTaGGCACTGCCTGCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: LTLTWQTPPHCAEPYRFCALTGS*ALPAGR
Trigger: CCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAGGC...ACAAAACCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CCA 90 bp GTAAACAGAAGACATCTGGTGGCCCCTCCCCTTCCAGGTTGGCAAGTGAGGGACGCGATGCGGTCGAAATaGTGGATGTACACGTGCACG +
Preference number: 4 (lower is better)
Translates to: VNRRHLVAPPLPGWQVRDAMRSK*WMYTCT
Trigger: CGTGCACGTGTACATCCACCATTTCGACCGCATCGC...GTCCCTCACTTGCCAACCTGGAAGGGGAGGGGCCACCAGATGTCTTCTGTTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CAA 72 bp CTGACACTTGGGGGCAGAGGCAGGTGGATCTGTGAGTaGGAGGCCAGTCTGGCCTACAGAATAAGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: LTLGGRGRWICE*EASLAYRISSR
Trigger: CCTGGAACTTATTCTGTAGGCCAGACTGGCCTCCAACTCACAGATCCACCTGCCTCTGCCCCCAAGTGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR TCA 90 bp TGTGCACTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGTCAGTGACACATCCGTaGTGTCATCTCTTTCAGGGG +
Preference number: 4 (lower is better)
Translates to: CALTLTWQTPPHCAEPYRSVTHP*CHLFQG
Trigger: CCCCTGAAAGAGATGACATCACGGATGTGTCACTGA...CCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAGTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CCA 90 bp CCAGATCCTGCCTCCTCTCGGAGGCCATGGCACATACAGTGTAAACCCAGTGGCATGCGGTCGAAATGGTaGATGTACACGTGCACGAAC +
Preference number: 4 (lower is better)
Translates to: PDPASSRRPWHIQCKPSGMRSKW*MYTCTN
Trigger: GTTCGTGCACGTGTACATCCACCATTTCGACCGCAT...GCCACTGGGTTTACACTGTATGTGCCATGGCCTCCGAGAGGAGGCAGGATCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CCA 90 bp TCCTCCTTGCAGCTGCCTGCAGAGTCTTGGGATCATAGGCATGCAGTGTATGCACCTGCAGGAAGGTCTTaGGGAATGGTGTGCCGACAT +
Preference number: 4 (lower is better)
Translates to: SSLQLPAESWDHRHAVYAPAGRS*GMVCRH
Trigger: ATGTCGGCACACCATTCCCCAAGACCTTCCTGCAGG...TGCATACACTGCATGCCTATGATCCCAAGACTCTGCAGGCAGCTGCAAGGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CCA 90 bp ACTGCAGATCTAAGGGTGGGAGCCACAAGTGAATTCATTACTGGATCCCAGGTTGCCTCAGAGCCCATCTaGGCGATGCGGTCGAAATGG +
Preference number: 4 (lower is better)
Translates to: TADLRVGATSEFITGSQVASEPI*AMRSKW
Trigger: CCATTTCGACCGCATCGCCCAGATGGGCTCTGAGGC...AACCTGGGATCCAGTAATGAATTCACTTGTGGCTCCCACCCTTAGATCTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
3UTR CAA 72 bp CCTGTGGCCCACAGGGGCCACACAACACACATAGTTTaGCTACACAATAGGCTGCCACTGAAGAGAGAGGTT +
Preference number: 4 (lower is better)
Translates to: PVAHRGHTTHIV*LHNRLPLKREV
Trigger: AACCTCTCTCTTCAGTGGCAGCCTATTGTGTAGCAAAACTATGTGTGTTGTGTGGCCCCTGTGGGCCACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR GCA 90 bp AAAGTTGGAGCTGGGAACAGTCATATTCTGCTACACCCTCCATGGCATGACAGAAAGCGTTGCTCGTCCTaGCAGCGGTACTCGTACTTG +
Preference number: 4 (lower is better)
Translates to: KVGAGNSHILLHPPWHDRKRCSS*QRYSYL
Trigger: CAAGTACGAGTACCGCTGGCAGGACGAGCAACGCTT...TCTGTCATGCCATGGAGGGTGTAGCAGAATATGACTGTTCCCAGCTCCAACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CAA 90 bp TGCCATGCTCCTGAGACACGAGCTGCACACAGTTGTCTCCCCAAGTCTCAGCGGGGGCTTCCGGAAGCGTaGCTCGTCCTGCCAGCGGTA +
Preference number: 5 (lower is better)
Translates to: CHAPETRAAHSCLPKSQRGLPEA*LVLPAV
Trigger: TACCGCTGGCAGGACGAGCAACGCTTCCGGAAGCCC...CCGCTGAGACTTGGGGAGACAACTGTGTGCAGCTCGTGTCTCAGGAGCATGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CAA 90 bp GCCCATGGCTGCCTGATTCTCCCTGTCCCCTGGGCACCCTATGTCTGGCTCTCCAGGGGCTCCAGCTCTTaGGGGTCAATGAGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: AHGCLILPVPWAPYVWLSRGSSS*GSMRLN
Trigger: GTTCAACCTCATTGACCCCAAAGAGCTGGAGCCCCT...GGAGAGCCAGACATAGGGTGCCCAGGGGACAGGGAGAATCAGGCAGCCATGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CAA 90 bp ACCCAGTGGCTGAAAGCACAGTGTCCAGGTTCAAGTTCAGGCCCTGGATGCCGGGGCTCGAACTTGCGTTaGGGCCTGAATGTCTTGTCC +
Preference number: 5 (lower is better)
Translates to: TQWLKAQCPGSSSGPGCRGSNLR*GLNVLS
Trigger: GGACAAGACATTCAGGCCCAAACGCAAGTTCGAGCC...CCGGCATCCAGGGCCTGAACTTGAACCTGGACACTGTGCTTTCAGCCACTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS GCA 90 bp CCCGCATTAAGAGATGCCTGTGCACGCTTGTGTAGTTCGAAGCGCTaGGTGCCAGGCTCGAACTTGCGTTTGGGCCTGAATGTCTTGTCC +
Preference number: 5 (lower is better)
Translates to: PALRDACARLCSSKR*VPGSNLRLGLNVLS
Trigger: GGACAAGACATTCAGGCCCAAACGCAAGTTCGAGCCTGGCACGCAGCGCTTCGAACTACACAAGCGTGCACAGGCATCTCTTAATGCGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003438.11
ENSMUST00000218090.2
ENSMUST00000220138.2
CDS GCA 90 bp GGATGTACACGTGCACGAACACACGGAACAGCCTTGACAGGATCTTaGGCACTGCCTGCAGGAAGGTCTTGGGGAATGGTGTGCCGACAT +
Preference number: 5 (lower is better)
Translates to: GCTRARTHGTALTGS*ALPAGRSWGMVCRH
Trigger: ATGTCGGCACACCATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAGGCTGTTCCGTGTGTTCGTGCACGTGTACATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CAA 90 bp TGTGCACTCACGCTCACGTGGCAAACACCTCCCCACTGTGCAGAACCTTACCGGAAGATGTCCTCGTTGTaGATCTGCACCTCGATCCAG +
Preference number: 5 (lower is better)
Translates to: CALTLTWQTPPHCAEPYRKMSSL*ICTSIQ
Trigger: CTGGATCGAGGTGCAGATCAACAACGAGGACATCTT...CCGGTAAGGTTCTGCACAGTGGGGAGGTGTTTGCCACGTGAGCGTGAGTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CAA 90 bp TCTGGCCTACAGAATAAGTTCCAGGACAGCCAGGGCTACATAGTAAGAGCCTGTACACACGGAACAGCCTaGACAGGATCTTGCGCACTG +
Preference number: 5 (lower is better)
Translates to: SGLQNKFQDSQGYIVRACTHGTA*TGSCAL
Trigger: CAGTGCGCAAGATCCTGTCAAGGCTGTTCCGTGTGT...ACAGGCTCTTACTATGTAGCCCTGGCTGTCCTGGAACTTATTCTGTAGGCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS-3UTR CAA 90 bp TCTGGCCTACAGAATAAGTTCCAGGACAGCCAGGGCTACATAGTAAGAGCCTGTCTGAATGTCTTGTCCTaGTTGAACACTTGTTTAAGG +
Preference number: 5 (lower is better)
Translates to: SGLQNKFQDSQGYIVRACLNVLS*LNTCLR
Trigger: CCTTAAACAAGTGTTCAACAAGGACAAGACATTCAG...ACAGGCTCTTACTATGTAGCCCTGGCTGTCCTGGAACTTATTCTGTAGGCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS CAA 90 bp GCCAACCGCAGATCCAGGCCCGCATTAAGAGATGCCTGTGCACGCTaGTGTAGTTCGAAGCGCTGCGTGCCAGGCTCGAACTTGCGTTTG +
Preference number: 6 (lower is better)
Translates to: ANRRSRPALRDACAR*CSSKRCVPGSNLRL
Trigger: CAAACGCAAGTTCGAGCCTGGCACGCAGCGCTTCGAACTACACAAGCGTGCACAGGCATCTCTTAATGCGGGCCTGGATCTGCGGTTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003438.11
ENSMUST00000218090.2
ENSMUST00000220138.2
CDS CAA 72 bp AGATCCAGGCCCGCATTAAGAGATGCCTGTGCACGCTaGTGTAGTTCGAAGCGCTGCGTGCCAGGCTCGAAC +
Preference number: 6 (lower is better)
Translates to: RSRPALRDACAR*CSSKRCVPGSN
Trigger: GTTCGAGCCTGGCACGCAGCGCTTCGAACTACACAAGCGTGCACAGGCATCTCTTAATGCGGGCCTGGATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003438.11
ENSMUST00000218090.2
ENSMUST00000220138.2
CDS CAA 90 bp CGGAACAGCCTTGACAGGATCTTGCGCACTGCCTGCAGGAAGGTCTaGGGGAATGGTGTGCCGACATTAGTGGGGAAGATGTCCTCGTTG +
Preference number: 6 (lower is better)
Translates to: RNSLDRILRTACRKV*GNGVPTLVGKMSSL
Trigger: CAACGAGGACATCTTCCCCACTAATGTCGGCACACCATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAGGCTGTTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS CAA 90 bp TGGATGTACACGTGCACGAACACACGGAACAGCCTTGACAGGATCTaGCGCACTGCCTGCAGGAAGGTCTTGGGGAATGGTGTGCCGACA +
Preference number: 6 (lower is better)
Translates to: WMYTCTNTRNSLDRI*RTACRKVLGNGVPT
Trigger: TGTCGGCACACCATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAGGCTGTTCCGTGTGTTCGTGCACGTGTACATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS CAA 72 bp ACGTGCACGAACACACGGAACAGCCTTGACAGGATCTaGCGCACTGCCTGCAGGAAGGTCTTGGGGAATGGT +
Preference number: 6 (lower is better)
Translates to: TCTNTRNSLDRI*RTACRKVLGNG
Trigger: ACCATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAGGCTGTTCCGTGTGTTCGTGCACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS TCA 72 bp GTGGATGTACACGTGCACGAACACACGGAACAGCCTTaGCAGGATCTTGCGCACTGCCTGCAGGAAGGTCTT +
Preference number: 6 (lower is better)
Translates to: VDVHVHEHTEQP*QDLAHCLQEGL
Trigger: AAGACCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAGGCTGTTCCGTGTGTTCGTGCACGTGTACATCCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS CCA 72 bp GATCTTGCGCACTGCCTGCAGGAAGGTCTTGGGGAATaGTGTGCCGACATTAGTGGGGAAGATGTCCTCGTT +
Preference number: 6 (lower is better)
Translates to: DLAHCLQEGLGE*CADISGEDVLV
Trigger: AACGAGGACATCTTCCCCACTAATGTCGGCACACCATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11
CDS CAA 72 bp CTTGACAGGATCTTGCGCACTGCCTGCAGGAAGGTCTaGGGGAATGGTGTGCCGACATTAGTGGGGAAGATG +
Preference number: 6 (lower is better)
Translates to: LDRILRTACRKV*GNGVPTLVGKM
Trigger: CATCTTCCCCACTAATGTCGGCACACCATTCCCCAAGACCTTCCTGCAGGCAGTGCGCAAGATCCTGTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003438.11