RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MNDAL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090272

Ensembl transcript IDs: ENSMUST00000186442.7, ENSMUST00000188804.7, ENSMUST00000190071.2, ENSMUST00000190651.4

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACGGGTCTGTTGCAGTGAGCACCATCACTGTCAGGGGCTCTGAGTaGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTTGTGGT +
Preference number: 1 (lower is better)
Translates to: NGSVAVSTITVRGSE*RTAPLGMFWFWGCG
Trigger: ACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAACAGACCCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR TCA 90 bp TTCAAACGGGTCTGTTGCAGTGAGCACCATCACTGTCAGGGGCTCTaGGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTTG +
Preference number: 1 (lower is better)
Translates to: FKRVCCSEHHHCQGL*VENSTSGNVLVLGL
Trigger: CAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAACAGACCCGTTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR TCA 90 bp TTACTTCATGTTCTGGTGATTCATATTCAAACGGGTCTGTTGCAGTaGGCACCATCACTGTCAGGGGCTCTGAGTGGAGAACAGCACCTC +
Preference number: 1 (lower is better)
Translates to: LLHVLVIHIQTGLLQ*APSLSGALSGEQHL
Trigger: GAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAACAGACCCGTTTGAATATGAATCACCAGAACATGAAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 90 bp TGGTTCGTAGCTGAAGGAATGTTAGATGAAGCTGAAGATGAGCTGTaGAGTATTGGTGACTGGCACCTGGCTGTGGGTTCTTCACAACAG +
Preference number: 1 (lower is better)
Translates to: WFVAEGMLDEAEDEL*SIGDWHLAVGSSQQ
Trigger: CTGTTGTGAAGAACCCACAGCCAGGTGCCAGTCACCAATACTCCACAGCTCATCTTCAGCTTCATCTAACATTCCTTCAGCTACGAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 90 bp AGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTTGTGGTTTTTaGTTCGTAGCTGAAGGAATGTTAGATGAAGCTGAAGATGAGCTG +
Preference number: 1 (lower is better)
Translates to: RTAPLGMFWFWGCGF*FVAEGMLDEAEDEL
Trigger: CAGCTCATCTTCAGCTTCATCTAACATTCCTTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR-3UTR CCA 90 bp TCAGCCTTTAACACAGAGGAAGTCTCATTGATCTCCAGGATGCCTTTGCTCTCAGGAGAACAGCACCTCTaGGAATGTTCTGGTTCTGGG +
Preference number: 2 (lower is better)
Translates to: SAFNTEEVSLISRMPLLSGEQHL*ECSGSG
Trigger: CCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCC...TGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGTTAAAGGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR-3UTR CCA 90 bp GCCTTTAACACAGAGGAAGTCTCATTGATCTCCAGGATGCCTTTGCTCTCAAAGCCTCTGGGAATGTTCTaGTTCTGGGGTTGTGGTTTT +
Preference number: 2 (lower is better)
Translates to: AFNTEEVSLISRMPLLSKPLGMF*FWGCGF
Trigger: AAAACCACAACCCCAGAACCAGAACATTCCCAGAGG...CTTTGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGTTAAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp GTTGCAGTGAGCACCATCACTGTCAGGGGCTCTGAGTaGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGG +
Preference number: 3 (lower is better)
Translates to: VAVSTITVRGSE*RTAPLGMFWFW
Trigger: CCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR TCA 72 bp TGGCACCTGGCTGTGGGTTCTTCACAACAGGGAGGCTaGTCTGGTTCCTTAGCCGCCTTGCTCTTTTTCACT +
Preference number: 3 (lower is better)
Translates to: WHLAVGSSQQGG*SGSLAALLFFT
Trigger: AGTGAAAAAGAGCAAGGCGGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAGGTGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR TCA 72 bp GTCTGTTGCAGTGAGCACCATCACTGTCAGGGGCTCTaGGTGGAGAACAGCACCTCTGGGAATGTTCTGGTT +
Preference number: 3 (lower is better)
Translates to: VCCSEHHHCQGL*VENSTSGNVLV
Trigger: AACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAACAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp CCTGGCTGTGGGTTCTTCACAACAGGGAGGCTGATCTaGTTCCTTAGCCGCCTTGCTCTTTTTCACTCCAGT +
Preference number: 3 (lower is better)
Translates to: PGCGFFTTGRLI*FLSRLALFHSS
Trigger: ACTGGAGTGAAAAAGAGCAAGGCGGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp ATGAGCTGTGGAGTATTGGTGACTGGCACCTGGCTGTaGGTTCTTCACAACAGGGAGGCTGATCTGGTTCCT +
Preference number: 3 (lower is better)
Translates to: MSCGVLVTGTWL*VLHNREADLVP
Trigger: AGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAGGTGCCAGTCACCAATACTCCACAGCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp CTGAAGATGAGCTGTGGAGTATTGGTGACTGGCACCTaGCTGTGGGTTCTTCACAACAGGGAGGCTGATCTG +
Preference number: 3 (lower is better)
Translates to: LKMSCGVLVTGT*LWVLHNREADL
Trigger: CAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAGGTGCCAGTCACCAATACTCCACAGCTCATCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp GGCTCTGAGTGGAGAACAGCACCTCTGGGAATGTTCTaGTTCTGGGGTTGTGGTTTTTGGTTCGTAGCTGAA +
Preference number: 3 (lower is better)
Translates to: GSEWRTAPLGMF*FWGCGFWFVAE
Trigger: TTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR TCA 72 bp GTTCTGGTGATTCATATTCAAACGGGTCTGTTGCAGTaGGCACCATCACTGTCAGGGGCTCTGAGTGGAGAA +
Preference number: 3 (lower is better)
Translates to: VLVIHIQTGLLQ*APSLSGALSGE
Trigger: TTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAACAGACCCGTTTGAATATGAATCACCAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp GAGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTaGGGTTGTGGTTTTTGGTTCGTAGCTGAAGGAATG +
Preference number: 3 (lower is better)
Translates to: EWRTAPLGMFWF*GCGFWFVAEGM
Trigger: CATTCCTTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR TCA 72 bp GGTCAGGATCAGCCTTTAACACAGAGGAAGTCTCATTaGTCTCCAGGATGCCTTTGCTCTCAAAGTAATTGG +
Preference number: 3 (lower is better)
Translates to: GQDQPLTQRKSH*SPGCLCSQSNW
Trigger: CCAATTACTTTGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGTTAAAGGCTGATCCTGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
3UTR CCA 72 bp CCTCTGGGAATGTTCTGGTTCTGGGGTTGTGGTTTTTaGTTCGTAGCTGAAGGAATGTTAGATGAAGCTGAA +
Preference number: 3 (lower is better)
Translates to: PLGMFWFWGCGF*FVAEGMLDEAE
Trigger: TTCAGCTTCATCTAACATTCCTTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR TCA 90 bp CCTGGCTGTGGGTTCTTCACAACAGGGAGGCTGATCTGGTTCCTTAGCCGCCTTAAAGGTTCTGGAAGCTaGGCCTGCTCCTGGGTGAGC +
Preference number: 4 (lower is better)
Translates to: PGCGFFTTGRLIWFLSRLKGSGS*ACSWVS
Trigger: GCTCACCCAGGAGCAGGCTCAGCTTCCAGAACCTTT...AAGGCGGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR CCA 90 bp GGCTGTGGGTTCTTCACAACAGGGAGGCTGATCTGGTTCCTTAGCCGCCTTGCTTGTTTAAGGAACTGCTaGGTGGTGTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: GCGFFTTGRLIWFLSRLACLRNC*VVLVEA
Trigger: AGCCTCCACCAACACCACCCAGCAGTTCCTTAAACA...AGCAAGGCGGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR GCA 90 bp GTCAGGGGCTCTGAGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTTCTTGTTTGAGGAACTaGTGGGTGATGTTGGTGGAG +
Preference number: 4 (lower is better)
Translates to: VRGSEWRTAPLGMFWFWGSCLRN*WVMLVE
Trigger: CTCCACCAACATCACCCAGCAGTTCCTCAAACAAGA...ACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR CCA 90 bp GAGCTGTGGAGTATTGGTGACTGGCACCTGGCTGTGGGTTCTTCACAACAGGGAGGCTTAGGAGGAGTCTaGAGGCAATCTTCATCCTTT +
Preference number: 4 (lower is better)
Translates to: ELWSIGDWHLAVGSSQQGGLGGV*RQSSSF
Trigger: AAAGGATGAAGATTGCCTCCAGACTCCTCCTAAGCC...TCCCTGTTGTGAAGAACCCACAGCCAGGTGCCAGTCACCAATACTCCACAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR CCA 90 bp GTCAGGGGCTCTGAGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTGGCTTAGGAGAATTCTaGAGACAATCTTCCTCTGTT +
Preference number: 4 (lower is better)
Translates to: VRGSEWRTAPLGMFWFWGGLGEF*RQSSSV
Trigger: AACAGAGGAAGATTGTCTCCAGAATTCTCCTAAGCC...ACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR TCA 90 bp TCAGCCTTTAACACAGAGGAAGTCTCATTGATCTCCAGGATGCCTTTGCTCTCAGAGCCTGCTCCTGGGTaGGCTTCTTTTTCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: SAFNTEEVSLISRMPLLSEPAPG*ASFSFH
Trigger: GTGGAAAGAAAAAGAAGCTCACCCAGGAGCAGGCTC...TGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGTTAAAGGCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR CCA 90 bp TCAGCCTTTAACACAGAGGAAGTCTCATTGATCTCCAGGATGCCTTTGCTCTCATGTTTGAGGAACTGCTaGGTGATGTTGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: SAFNTEEVSLISRMPLLSCLRNC*VMLVEA
Trigger: AGCCTCCACCAACATCACCCAGCAGTTCCTCAAACA...TGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGTTAAAGGCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR CCA 90 bp TTCTGGTTCTGGGGTTGTGGTTTTTGGTTCGTAGCTGAAGGAATGTTAGATGAAACTGCTGGGTGGTGTTaGTGGAGGCTTAGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: FWFWGCGFWFVAEGMLDETAGWC*WRLRRS
Trigger: ACTCCTCCTAAGCCTCCACCAACACCACCCAGCAGT...TTCATCTAACATTCCTTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR TCA 90 bp GGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTTGTGGTTTTTGGTTCGTTTTATATCGGTTCCTaGAGTTTCTGGAAGATGATC +
Preference number: 4 (lower is better)
Translates to: GEQHLWECSGSGVVVFGSFYIGS*SFWKMI
Trigger: GATCATCTTCCAGAAACTTCAGGAACCGATATAAAA...CGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS CCA 90 bp AGGGGCTCTGAGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTaGGGTTGTGGTTTTTGGTTCTTGTTTAAGGAACTGCTGGGTGGT +
Preference number: 5 (lower is better)
Translates to: RGSEWRTAPLGMFWF*GCGFWFLFKELLGG
Trigger: ACCACCCAGCAGTTCCTTAAACAAGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186442.7
CDS-3UTR CAA 90 bp CTGGGAATGTTCTGGTTCTGGGGTTGTGGTTTTTGGTTCGTAGCTGAAGGAATGTTCTCTTTTTCTTGTTaGAGGAACTGCTGGGTGATG +
Preference number: 5 (lower is better)
Translates to: LGMFWFWGCGFWFVAEGMFSFSC*RNCWVM
Trigger: CATCACCCAGCAGTTCCTCAAACAAGAAAAAGAGAA...CATTCCTTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS-3UTR CAA 90 bp GTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTGGGGTTGTGGTTTTTGGTTTCTTTTCTCTTTTTCTaGTTTGAGGAACTGCTGGGT +
Preference number: 5 (lower is better)
Translates to: VENSTSGNVLVLGLWFLVSFLFF*FEELLG
Trigger: ACCCAGCAGTTCCTCAAACAAGAAAAAGAGAAAAGA...AACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000190071.2
CDS CCA 90 bp TTTGAGGAACTGCTGGGTGATGTTGGTGGAGGCTTAGGAGAATTCTaGAGACAATCTTCCTCTGTTTTTATATCGGTTCCTGAAGTTTCT +
Preference number: 5 (lower is better)
Translates to: FEELLGDVGGGLGEF*RQSSSVFISVPEVS
Trigger: AGAAACTTCAGGAACCGATATAAAAACAGAGGAAGATTGTCTCCAGAATTCTCCTAAGCCTCCACCAACATCACCCAGCAGTTCCTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
ENSMUST00000190071.2
CDS TCA 90 bp AGGAGAATTCTGGAGACAATCTTCCTCTGTTTTTATATCGGTTCCTaGAGTTTCTGGAAGATGATCCTGATCCTGGGTGAGCTTATTTTT +
Preference number: 5 (lower is better)
Translates to: RRILETIFLCFYIGS*SFWKMILILGELIF
Trigger: AAAAATAAGCTCACCCAGGATCAGGATCATCTTCCAGAAACTTCAGGAACCGATATAAAAACAGAGGAAGATTGTCTCCAGAATTCTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
ENSMUST00000190071.2
CDS CCA 72 bp GGCTCTGAGTGGAGAACAGCACCTCTGGGAATGTTCTaGTTCTGGGGTTGTGGTTTTTGGTTCTTGTTTAAG +
Preference number: 6 (lower is better)
Translates to: GSEWRTAPLGMF*FWGCGFWFLFK
Trigger: CTTAAACAAGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186442.7
CDS CCA 72 bp GAGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTaGGGTTGTGGTTTTTGGTTCTTGTTTAAGGAACTG +
Preference number: 6 (lower is better)
Translates to: EWRTAPLGMFWF*GCGFWFLFKEL
Trigger: CAGTTCCTTAAACAAGAACCAAAAACCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186442.7
CDS CAA 72 bp CAGATCTTAGGACTGGCATTTGCATTTCTGATAATATaGTTGGGCACTTCAATCATTTGGTCAGGATCAGCC +
Preference number: 6 (lower is better)
Translates to: QILGLAFAFLII*LGTSIIWSGSA
Trigger: GGCTGATCCTGACCAAATGATTGAAGTGCCCAACAATATTATCAGAAATGCAAATGCCAGTCCTAAGATCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
CDS CCA 72 bp GCATTTCTGATAATATTGTTGGGCACTTCAATCATTTaGTCAGGATCAGCCTTTAACACAGAGGAAGTCTCA +
Preference number: 6 (lower is better)
Translates to: AFLIILLGTSII*SGSAFNTEEVS
Trigger: TGAGACTTCCTCTGTGTTAAAGGCTGATCCTGACCAAATGATTGAAGTGCCCAACAATATTATCAGAAATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
CDS CAA 72 bp AAACACTCCATAGAACACTGCTCCAGAAGTACCCTTTaGAATATCACAGATCTTAGGACTGGCATTTGCATT +
Preference number: 6 (lower is better)
Translates to: KHSIEHCSRSTL*NITDLRTGICI
Trigger: AATGCAAATGCCAGTCCTAAGATCTGTGATATTCAAAAGGGTACTTCTGGAGCAGTGTTCTATGGAGTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
CDS GCA 72 bp ACCCTTTTGAATATCACAGATCTTAGGACTGGCATTTaGATTTCTGATAATATTGTTGGGCACTTCAATCAT +
Preference number: 6 (lower is better)
Translates to: TLLNITDLRTGI*ISDNIVGHFNH
Trigger: ATGATTGAAGTGCCCAACAATATTATCAGAAATGCAAATGCCAGTCCTAAGATCTGTGATATTCAAAAGGGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
CDS CAA 72 bp TTCTTTGAAGACGGTACACTCTTGTATGATTCTTTATaGATGAAAAGAGATTCGGAGGAACTGAGTTCATCT +
Preference number: 6 (lower is better)
Translates to: FFEDGTLLYDSL*MKRDSEELSSS
Trigger: AGATGAACTCAGTTCCTCCGAATCTCTTTTCATCAATAAAGAATCATACAAGAGTGTACCGTCTTCAAAGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000186442.7
ENSMUST00000188804.7
ENSMUST00000190651.4