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Pregenerated sensors for MND1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033752

Ensembl transcript IDs: ENSMUST00000047368.8

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GAGAGTTCAGAGCCTCCAACTTGCGCTTCCTGGCATGAAGAGCCTTaGTCGGAAAAGCCCAATAGTAATTGGACGTCCCGATCCTCTCGC +
Preference number: 5 (lower is better)
Translates to: ESSEPPTCASWHEEP*SEKPNSNWTSRSSR
Trigger: GCGAGAGGATCGGGACGTCCAATTACTATTGGGCTTTTCCGAGCAAGGCTCTTCATGCCAGGAAGCGCAAGTTGGAGGCTCTGAACTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS GCA 90 bp TGGCTCGTTCTTCCGTCTCTTGCCGGCCAACTCTTGCTTTCTCAATaGTCTTCTGTAAGTCTGCATGCTTCTGGCTTCCCTCTGACAGCT +
Preference number: 5 (lower is better)
Translates to: WLVLPSLAGQLLLSQ*SSVSLHASGFPLTA
Trigger: AGCTGTCAGAGGGAAGCCAGAAGCATGCAGACTTACAGAAGAGCATTGAGAAAGCAAGAGTTGGCCGGCAAGAGACGGAAGAACGAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS CCA 90 bp GTTGTTGCCTTTGGTCTCGAAATGAAGAAAGTTCTTTTGCAAGCATaGCTCGTTCTTCCGTCTCTTGCCGGCCAACTCTTGCTTTCTCAA +
Preference number: 5 (lower is better)
Translates to: VVAFGLEMKKVLLQA*LVLPSLAGQLLLSQ
Trigger: TTGAGAAAGCAAGAGTTGGCCGGCAAGAGACGGAAGAACGAGCCATGCTTGCAAAAGAACTTTCTTCATTTCGAGACCAAAGGCAACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS GCA 90 bp AATGAAGAAAGTTCTTTTGCAAGCATGGCTCGTTCTTCCGTCTCTTaGCGGCCAACTCTTGCTTTCTCAATGCTCTTCTGTAAGTCTGCA +
Preference number: 5 (lower is better)
Translates to: NEESSFASMARSSVS*RPTLAFSMLFCKSA
Trigger: TGCAGACTTACAGAAGAGCATTGAGAAAGCAAGAGTTGGCCGGCAAGAGACGGAAGAACGAGCCATGCTTGCAAAAGAACTTTCTTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS TCA 90 bp ATATTTTTCCACTTCTGCCTTAAGTTGTTGCCTTTGGTCTCGAAATaGAGAAAGTTCTTTTGCAAGCATGGCTCGTTCTTCCGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: IFFHFCLKLLPLVSK*RKFFCKHGSFFRLL
Trigger: CAAGAGACGGAAGAACGAGCCATGCTTGCAAAAGAACTTTCTTCATTTCGAGACCAAAGGCAACAACTTAAGGCAGAAGTGGAAAAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS CCA 90 bp TCACATTCTCGATATTTTTCCACTTCTGCCTTAAGTTGTTGCCTTTaGTCTCGAAATGAAGAAAGTTCTTTTGCAAGCATGGCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: SHSRYFSTSALSCCL*SRNEESSFASMARS
Trigger: AGAACGAGCCATGCTTGCAAAAGAACTTTCTTCATTTCGAGACCAAAGGCAACAACTTAAGGCAGAAGTGGAAAAATATCGAGAATGTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS TCA 72 bp TGTAAGTCTGCATGCTTCTGGCTTCCCTCTGACAGCTaGGAGTTCAGAGCCTCCAACTTGCGCTTCCTGGCA +
Preference number: 6 (lower is better)
Translates to: CKSACFWLPSDS*EFRASNLRFLA
Trigger: TGCCAGGAAGCGCAAGTTGGAGGCTCTGAACTCTCAGCTGTCAGAGGGAAGCCAGAAGCATGCAGACTTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS GCA 72 bp GAGCCTCCAACTTGCGCTTCCTGGCATGAAGAGCCTTaGTCGGAAAAGCCCAATAGTAATTGGACGTCCCGA +
Preference number: 6 (lower is better)
Translates to: EPPTCASWHEEP*SEKPNSNWTSR
Trigger: TCGGGACGTCCAATTACTATTGGGCTTTTCCGAGCAAGGCTCTTCATGCCAGGAAGCGCAAGTTGGAGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS GCA 72 bp CTTCCGTCTCTTGCCGGCCAACTCTTGCTTTCTCAATaGTCTTCTGTAAGTCTGCATGCTTCTGGCTTCCCT +
Preference number: 6 (lower is better)
Translates to: LPSLAGQLLLSQ*SSVSLHASGFP
Trigger: AGGGAAGCCAGAAGCATGCAGACTTACAGAAGAGCATTGAGAAAGCAAGAGTTGGCCGGCAAGAGACGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8
CDS CCA 72 bp TTTGGTCTCGAAATGAAGAAAGTTCTTTTGCAAGCATaGCTCGTTCTTCCGTCTCTTGCCGGCCAACTCTTG +
Preference number: 6 (lower is better)
Translates to: FGLEMKKVLLQA*LVLPSLAGQLL
Trigger: CAAGAGTTGGCCGGCAAGAGACGGAAGAACGAGCCATGCTTGCAAAAGAACTTTCTTCATTTCGAGACCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047368.8