RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MMP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043613

Ensembl transcript IDs: ENSMUST00000034497.8

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTATTAAATAAAACAAACCATCTACACAGTTCAGACACTTGTTTGTaGCCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAG +
Preference number: 1 (lower is better)
Translates to: LLNKTNHLHSSDTCL*PRSAFPPLLGTQCK
Trigger: CTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGATGGTTTGTTTTATTTAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
3UTR-3UTR TCA 90 bp TCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGCCATAGCACATGCTaGACAAAGCACTTCCTTTCA +
Preference number: 2 (lower is better)
Translates to: STQFRHLFVAQECLPSSPCHSTC*TKHFLS
Trigger: TGAAAGGAAGTGCTTTGTTCAGCATGTGCTATGGCA...AGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
3UTR-3UTR TCA 90 bp ATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCCTTCTGAACATCCTTTaGCAACTTGACGTTGACTGG +
Preference number: 2 (lower is better)
Translates to: IYTVQTLVCGPGVPSLLSLLNIL*QLDVDW
Trigger: CCAGTCAACGTCAAGTTGTCAAAGGATGTTCAGAAG...GGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CCA 90 bp CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCAGGAACACCACACCTaGGCTTATGCATCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: PGVPSLLSLGHSVSYTVLQEHHT*AYASAP
Trigger: TGGAGCTGATGCATAAGCCCAGGTGTGGTGTTCCTG...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGGAGTGGCCAAGTTCATaGGCAGCAACCAGGAATAGG +
Preference number: 4 (lower is better)
Translates to: YTVQTLVCGPGVPSLLSLEWPSS*AATRNR
Trigger: CCTATTCCTGGTTGCTGCTCATGAACTTGGCCACTC...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp ATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCCAGGCTCAGGAGTCCTaGGAGATTTGCGCCAAAAGT +
Preference number: 4 (lower is better)
Translates to: IYTVQTLVCGPGVPSLLSQAQES*EICAKS
Trigger: ACTTTTGGCGCAAATCTCTCAGGACTCCTGAGCCTG...GGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CCA 90 bp CTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTCATCAGGGGATGCTGTaGGAGTTCCATAGAGGGACT +
Preference number: 4 (lower is better)
Translates to: LHSSDTCLWPRSAFPPLLHQGML*EFHRGT
Trigger: AGTCCCTCTATGGAACTCCCACAGCATCCCCTGATG...AAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGATGCAATGGGTAGGATaGGCACACAACCACACACAG +
Preference number: 4 (lower is better)
Translates to: YTVQTLVCGPGVPSLLSLMQWVG*AHNHTQ
Trigger: CTGTGTGTGGTTGTGTGCTCATCCTACCCATTGCAT...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp TTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCCTCTCCCCGGAGGGTGCTaGCTGCATCAAAGAACAAAG +
Preference number: 4 (lower is better)
Translates to: FPPLLGTQCKLHSASEHPLPGGC*LHQRTK
Trigger: CTTTGTTCTTTGATGCAGTCAGCACCCTCCGGGGAG...AGGATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR GCA 90 bp CCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTGGGTCAAATTCCAACTaGGAAGATCCACTGAAGAAG +
Preference number: 4 (lower is better)
Translates to: PRSAFPPLLGTQCKLHSAGSNSN*EDPLKK
Trigger: CTTCTTCAGTGGATCTTCGCAGTTGGAATTTGACCC...AGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTACTGCGAAGATCCACTaGAGAAGTAGAGAAACCCAA +
Preference number: 4 (lower is better)
Translates to: PGVPSLLSLGHSVSYTVLTAKIH*RSRETQ
Trigger: TTGGGTTTCTCTACTTCTTCAGTGGATCTTCGCAGT...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR GCA 90 bp CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTAGCATCATCATCCCTTaGACTGTCATGCAATGGGTA +
Preference number: 4 (lower is better)
Translates to: PGVPSLLSLGHSVSYTVLSIIIP*TVMQWV
Trigger: TACCCATTGCATGACAGTGCAAGGGATGATGATGCT...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR GCA 90 bp TCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTCCGGAGGGTGCTGACTaGATCAAAGAACAAAGTAGA +
Preference number: 4 (lower is better)
Translates to: STQFRHLFVAQECLPSSPPEGAD*IKEQSR
Trigger: TCTACTTTGTTCTTTGATGCAGTCAGCACCCTCCGG...AGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR GCA 90 bp GTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACGTTAGTAACCTCATATaGAGCATCCATGTTGGATGG +
Preference number: 4 (lower is better)
Translates to: VCGPGVPSLLSLGHSVSYVSNLI*SIHVGW
Trigger: CCATCCAACATGGATGCTGCATATGAGGTTACTAAC...GTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CCA 90 bp CATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCATCTCCATTAATCCCTaGTCCAGGTGCATAGGCATG +
Preference number: 4 (lower is better)
Translates to: HLHSSDTCLWPRSAFPPLISINP*SRCIGM
Trigger: CATGCCTATGCACCTGGACCAGGGATTAATGGAGAT...GAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CCA 90 bp TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGCTTCCTGGGAAATCCTaGCTCCATGGATTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: YTVQTLVCGPGVPSLLSLLPGKS*LHGLFL
Trigger: AAGAAACAATCCATGGAGCCAGGATTTCCCAGGAAG...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp CCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCTCATCATCGTCAAAGTaGGCATCTCCATTAATCCCT +
Preference number: 4 (lower is better)
Translates to: PSLLSLGHSVSYTVLLNISSSSK*ASPLIP
Trigger: AGGGATTAATGGAGATGCTCACTTTGACGATGATGA...GATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR GCA 90 bp TCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTTTTCTAGGTATTTCTaGAGAAGCTCCATACCAGCA +
Preference number: 4 (lower is better)
Translates to: STQFRHLFVAQECLPSSPFSRYF*RSSIPA
Trigger: TGCTGGTATGGAGCTTCTGCAGAAATACCTAGAAAA...AGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR GCA 90 bp TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGTCCATGTTCTCCAACTaGAAAGGAGATCATTATGTC +
Preference number: 4 (lower is better)
Translates to: YTVQTLVCGPGVPSLLSLSMFSN*KGDHYV
Trigger: GACATAATGATCTCCTTTGCAGTTGGAGAACATGGA...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CCA 90 bp CATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCATCCACACTCTGTCTTaGCAAATCCGGTGTATAATT +
Preference number: 4 (lower is better)
Translates to: HLHSSDTCLWPRSAFPPLIHTLS*QIRCII
Trigger: AATTATACACCGGATTTGCCAAGACAGAGTGTGGAT...GAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp CTTCCTTTCACAAAGACTCAGATGAAGAACTATAAGCATCAGTTAAAACACAGGGACAGCATCCACCCTTaGGTCAACACCTGGAAAGTC +
Preference number: 4 (lower is better)
Translates to: LPFTKTQMKNYKHQLKHRDSIHP*VNTWKV
Trigger: GACTTTCCAGGTGTTGACTCAAGGGTGGATGCTGTC...CCTGTGTTTTAACTGATGCTTATAGTTCTTCATCTGAGTCTTTGTGAAAGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR TCA 90 bp CTTCCTTTCACAAAGACTCAGATGAAGAACTATAAGCATCAGTTAAAACACAGGCCATCTACATCATCTTaGGAGAGATGGAAACGGGAC +
Preference number: 4 (lower is better)
Translates to: LPFTKTQMKNYKHQLKHRPSTSS*ERWKRD
Trigger: GTCCCGTTTCCATCTCTCTCAAGATGATGTAGATGG...CCTGTGTTTTAACTGATGCTTATAGTTCTTCATCTGAGTCTTTGTGAAAGGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CCA 90 bp CTTCCTTTCACAAAGACTCAGATGAAGAACTATAAGCATCAGTTAAAACACAGGGAAATCCTGGCTCCATaGATTGTTTCTTCTCATCAA +
Preference number: 4 (lower is better)
Translates to: LPFTKTQMKNYKHQLKHREILAP*IVSSHQ
Trigger: TTGATGAGAAGAAACAATCCATGGAGCCAGGATTTC...CCTGTGTTTTAACTGATGCTTATAGTTCTTCATCTGAGTCTTTGTGAAAGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CAA 90 bp CCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTGGAGTCCTGAGAGATTaGCGCCAAAAGTGCCTGTCT +
Preference number: 5 (lower is better)
Translates to: PRSAFPPLLGTQCKLHSAGVLRD*RQKCLS
Trigger: AGACAGGCACTTTTGGCGCAAATCTCTCAGGACTCC...AGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CAA 90 bp CCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCCAGCATCATCATCCCTaGCACTGTCATGCAATGGGT +
Preference number: 5 (lower is better)
Translates to: PSLLSLGHSVSYTVLLNIQHHHP*HCHAMG
Trigger: ACCCATTGCATGACAGTGCAAGGGATGATGATGCTG...GATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CAA 90 bp CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTAATCCACACTCTGTCTaGGCAAATCCGGTGTATAAT +
Preference number: 5 (lower is better)
Translates to: PGVPSLLSLGHSVSYTVLNPHSV*ANPVYN
Trigger: ATTATACACCGGATTTGCCAAGACAGAGTGTGGATT...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CAA 90 bp TTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCCTTCCTGGCTCCATGGATaGTTTCTTCTCATCAAACCT +
Preference number: 5 (lower is better)
Translates to: FPPLLGTQCKLHSASEHPSWLHG*FLLIKP
Trigger: AGGTTTGATGAGAAGAAACAATCCATGGAGCCAGGA...AGGATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS-3UTR CAA 90 bp ATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCCAATTAAACCAGCTATaGCTCTTCAATATGTGGGTC +
Preference number: 5 (lower is better)
Translates to: IYTVQTLVCGPGVPSLLSQLNQL*LFNMWV
Trigger: GACCCACATATTGAAGAGCAATAGCTGGTTTAATTG...GGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS GCA 72 bp GTTAGACTTGGTGGGTACCACGAGGACATCAGGGGATaGTGTGGGAGTTCCATAGAGGGACTGAATACCATC +
Preference number: 6 (lower is better)
Translates to: VRLGGYHEDIRG*CGSSIEGLNTI
Trigger: GATGGTATTCAGTCCCTCTATGGAACTCCCACAGCATCCCCTGATGTCCTCGTGGTACCCACCAAGTCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS CAA 90 bp TTTCTAGGTATTTCTGCAGAAGCTCCATACCAGCATCATCATCCCTaGCACTGTCATGCAATGGGTAGGATGAGCACACAACCACACACA +
Preference number: 6 (lower is better)
Translates to: FLGISAEAPYQHHHP*HCHAMGRMSTQPHT
Trigger: TGTGTGTGGTTGTGTGCTCATCCTACCCATTGCATGACAGTGCAAGGGATGATGATGCTGGTATGGAGCTTCTGCAGAAATACCTAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS CAA 72 bp ATTTCTGCAGAAGCTCCATACCAGCATCATCATCCCTaGCACTGTCATGCAATGGGTAGGATGAGCACACAA +
Preference number: 6 (lower is better)
Translates to: ISAEAPYQHHHP*HCHAMGRMSTQ
Trigger: TTGTGTGCTCATCCTACCCATTGCATGACAGTGCAAGGGATGATGATGCTGGTATGGAGCTTCTGCAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS TCA 72 bp CCTGCTAGCTCCTCGTGCCCTCGTATAGCCCAGAACTaGTTTCCTTTAAAAATGAAAACAGTGTCTCTGTTA +
Preference number: 6 (lower is better)
Translates to: PASSSCPRIAQN*FPLKMKTVSLL
Trigger: TAACAGAGACACTGTTTTCATTTTTAAAGGAAATCAGTTCTGGGCTATACGAGGGCACGAGGAGCTAGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS CCA 72 bp AGTCCTCAGCTATCTTCCTGGGAAATCCTGGCTCCATaGATTGTTTCTTCTCATCAAACCTCCAGTATTTGT +
Preference number: 6 (lower is better)
Translates to: SPQLSSWEILAP*IVSSHQTSSIC
Trigger: ACAAATACTGGAGGTTTGATGAGAAGAAACAATCCATGGAGCCAGGATTTCCCAGGAAGATAGCTGAGGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8
CDS CAA 72 bp AACCAGCTATTGCTCTTCAATATGTGGGTCACTTTTTaGGCATTTGGGTCAAATTCCAACTGCGAAGATCCA +
Preference number: 6 (lower is better)
Translates to: NQLLLFNMWVTF*AFGSNSNCEDP
Trigger: TGGATCTTCGCAGTTGGAATTTGACCCAAATGCCAAAAAAGTGACCCACATATTGAAGAGCAATAGCTGGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034497.8