Pregenerated sensors for MMP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043613Ensembl transcript IDs: ENSMUST00000034497.8
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TTATTAAATAAAACAAACCATCTACACAGTTCAGACACTTGTTTGTaGCCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAG | + |
Preference number: 1 (lower is better) Translates to: LLNKTNHLHSSDTCL*PRSAFPPLLGTQCK Trigger: CTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGATGGTTTGTTTTATTTAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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3UTR-3UTR TCA 90 bp | TCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGCCATAGCACATGCTaGACAAAGCACTTCCTTTCA | + |
Preference number: 2 (lower is better) Translates to: STQFRHLFVAQECLPSSPCHSTC*TKHFLS Trigger: TGAAAGGAAGTGCTTTGTTCAGCATGTGCTATGGCA...AGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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3UTR-3UTR TCA 90 bp | ATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCCTTCTGAACATCCTTTaGCAACTTGACGTTGACTGG | + |
Preference number: 2 (lower is better) Translates to: IYTVQTLVCGPGVPSLLSLLNIL*QLDVDW Trigger: CCAGTCAACGTCAAGTTGTCAAAGGATGTTCAGAAG...GGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CCA 90 bp | CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCAGGAACACCACACCTaGGCTTATGCATCAGCTCCA | + |
Preference number: 4 (lower is better) Translates to: PGVPSLLSLGHSVSYTVLQEHHT*AYASAP Trigger: TGGAGCTGATGCATAAGCCCAGGTGTGGTGTTCCTG...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGGAGTGGCCAAGTTCATaGGCAGCAACCAGGAATAGG | + |
Preference number: 4 (lower is better) Translates to: YTVQTLVCGPGVPSLLSLEWPSS*AATRNR Trigger: CCTATTCCTGGTTGCTGCTCATGAACTTGGCCACTC...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | ATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCCAGGCTCAGGAGTCCTaGGAGATTTGCGCCAAAAGT | + |
Preference number: 4 (lower is better) Translates to: IYTVQTLVCGPGVPSLLSQAQES*EICAKS Trigger: ACTTTTGGCGCAAATCTCTCAGGACTCCTGAGCCTG...GGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CCA 90 bp | CTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTCATCAGGGGATGCTGTaGGAGTTCCATAGAGGGACT | + |
Preference number: 4 (lower is better) Translates to: LHSSDTCLWPRSAFPPLLHQGML*EFHRGT Trigger: AGTCCCTCTATGGAACTCCCACAGCATCCCCTGATG...AAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGATGCAATGGGTAGGATaGGCACACAACCACACACAG | + |
Preference number: 4 (lower is better) Translates to: YTVQTLVCGPGVPSLLSLMQWVG*AHNHTQ Trigger: CTGTGTGTGGTTGTGTGCTCATCCTACCCATTGCAT...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | TTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCCTCTCCCCGGAGGGTGCTaGCTGCATCAAAGAACAAAG | + |
Preference number: 4 (lower is better) Translates to: FPPLLGTQCKLHSASEHPLPGGC*LHQRTK Trigger: CTTTGTTCTTTGATGCAGTCAGCACCCTCCGGGGAG...AGGATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR GCA 90 bp | CCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTGGGTCAAATTCCAACTaGGAAGATCCACTGAAGAAG | + |
Preference number: 4 (lower is better) Translates to: PRSAFPPLLGTQCKLHSAGSNSN*EDPLKK Trigger: CTTCTTCAGTGGATCTTCGCAGTTGGAATTTGACCC...AGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTACTGCGAAGATCCACTaGAGAAGTAGAGAAACCCAA | + |
Preference number: 4 (lower is better) Translates to: PGVPSLLSLGHSVSYTVLTAKIH*RSRETQ Trigger: TTGGGTTTCTCTACTTCTTCAGTGGATCTTCGCAGT...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR GCA 90 bp | CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTAGCATCATCATCCCTTaGACTGTCATGCAATGGGTA | + |
Preference number: 4 (lower is better) Translates to: PGVPSLLSLGHSVSYTVLSIIIP*TVMQWV Trigger: TACCCATTGCATGACAGTGCAAGGGATGATGATGCT...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR GCA 90 bp | TCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTCCGGAGGGTGCTGACTaGATCAAAGAACAAAGTAGA | + |
Preference number: 4 (lower is better) Translates to: STQFRHLFVAQECLPSSPPEGAD*IKEQSR Trigger: TCTACTTTGTTCTTTGATGCAGTCAGCACCCTCCGG...AGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR GCA 90 bp | GTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACGTTAGTAACCTCATATaGAGCATCCATGTTGGATGG | + |
Preference number: 4 (lower is better) Translates to: VCGPGVPSLLSLGHSVSYVSNLI*SIHVGW Trigger: CCATCCAACATGGATGCTGCATATGAGGTTACTAAC...GTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CCA 90 bp | CATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCATCTCCATTAATCCCTaGTCCAGGTGCATAGGCATG | + |
Preference number: 4 (lower is better) Translates to: HLHSSDTCLWPRSAFPPLISINP*SRCIGM Trigger: CATGCCTATGCACCTGGACCAGGGATTAATGGAGAT...GAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CCA 90 bp | TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGCTTCCTGGGAAATCCTaGCTCCATGGATTGTTTCTT | + |
Preference number: 4 (lower is better) Translates to: YTVQTLVCGPGVPSLLSLLPGKS*LHGLFL Trigger: AAGAAACAATCCATGGAGCCAGGATTTCCCAGGAAG...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | CCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCTCATCATCGTCAAAGTaGGCATCTCCATTAATCCCT | + |
Preference number: 4 (lower is better) Translates to: PSLLSLGHSVSYTVLLNISSSSK*ASPLIP Trigger: AGGGATTAATGGAGATGCTCACTTTGACGATGATGA...GATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR GCA 90 bp | TCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTTTTCTAGGTATTTCTaGAGAAGCTCCATACCAGCA | + |
Preference number: 4 (lower is better) Translates to: STQFRHLFVAQECLPSSPFSRYF*RSSIPA Trigger: TGCTGGTATGGAGCTTCTGCAGAAATACCTAGAAAA...AGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR GCA 90 bp | TACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCTTGTCCATGTTCTCCAACTaGAAAGGAGATCATTATGTC | + |
Preference number: 4 (lower is better) Translates to: YTVQTLVCGPGVPSLLSLSMFSN*KGDHYV Trigger: GACATAATGATCTCCTTTGCAGTTGGAGAACATGGA...CAAGGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CCA 90 bp | CATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCATCCACACTCTGTCTTaGCAAATCCGGTGTATAATT | + |
Preference number: 4 (lower is better) Translates to: HLHSSDTCLWPRSAFPPLIHTLS*QIRCII Trigger: AATTATACACCGGATTTGCCAAGACAGAGTGTGGAT...GAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | CTTCCTTTCACAAAGACTCAGATGAAGAACTATAAGCATCAGTTAAAACACAGGGACAGCATCCACCCTTaGGTCAACACCTGGAAAGTC | + |
Preference number: 4 (lower is better) Translates to: LPFTKTQMKNYKHQLKHRDSIHP*VNTWKV Trigger: GACTTTCCAGGTGTTGACTCAAGGGTGGATGCTGTC...CCTGTGTTTTAACTGATGCTTATAGTTCTTCATCTGAGTCTTTGTGAAAGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR TCA 90 bp | CTTCCTTTCACAAAGACTCAGATGAAGAACTATAAGCATCAGTTAAAACACAGGCCATCTACATCATCTTaGGAGAGATGGAAACGGGAC | + |
Preference number: 4 (lower is better) Translates to: LPFTKTQMKNYKHQLKHRPSTSS*ERWKRD Trigger: GTCCCGTTTCCATCTCTCTCAAGATGATGTAGATGG...CCTGTGTTTTAACTGATGCTTATAGTTCTTCATCTGAGTCTTTGTGAAAGGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CCA 90 bp | CTTCCTTTCACAAAGACTCAGATGAAGAACTATAAGCATCAGTTAAAACACAGGGAAATCCTGGCTCCATaGATTGTTTCTTCTCATCAA | + |
Preference number: 4 (lower is better) Translates to: LPFTKTQMKNYKHQLKHREILAP*IVSSHQ Trigger: TTGATGAGAAGAAACAATCCATGGAGCCAGGATTTC...CCTGTGTTTTAACTGATGCTTATAGTTCTTCATCTGAGTCTTTGTGAAAGGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CAA 90 bp | CCCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTGGAGTCCTGAGAGATTaGCGCCAAAAGTGCCTGTCT | + |
Preference number: 5 (lower is better) Translates to: PRSAFPPLLGTQCKLHSAGVLRD*RQKCLS Trigger: AGACAGGCACTTTTGGCGCAAATCTCTCAGGACTCC...AGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CAA 90 bp | CCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCCAGCATCATCATCCCTaGCACTGTCATGCAATGGGT | + |
Preference number: 5 (lower is better) Translates to: PSLLSLGHSVSYTVLLNIQHHHP*HCHAMG Trigger: ACCCATTGCATGACAGTGCAAGGGATGATGATGCTG...GATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CAA 90 bp | CCAGGAGTGCCTTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTAATCCACACTCTGTCTaGGCAAATCCGGTGTATAAT | + |
Preference number: 5 (lower is better) Translates to: PGVPSLLSLGHSVSYTVLNPHSV*ANPVYN Trigger: ATTATACACCGGATTTGCCAAGACAGAGTGTGGATT...AAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAAGGCACTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CAA 90 bp | TTCCCTCCTCTCCTTGGGACACAGTGTAAGCTACACAGTGCTTCTGAACATCCTTCCTGGCTCCATGGATaGTTTCTTCTCATCAAACCT | + |
Preference number: 5 (lower is better) Translates to: FPPLLGTQCKLHSASEHPSWLHG*FLLIKP Trigger: AGGTTTGATGAGAAGAAACAATCCATGGAGCCAGGA...AGGATGTTCAGAAGCACTGTGTAGCTTACACTGTGTCCCAAGGAGAGGAGGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS-3UTR CAA 90 bp | ATCTACACAGTTCAGACACTTGTTTGTGGCCCAGGAGTGCCTTCCCTCCTCTCCCAATTAAACCAGCTATaGCTCTTCAATATGTGGGTC | + |
Preference number: 5 (lower is better) Translates to: IYTVQTLVCGPGVPSLLSQLNQL*LFNMWV Trigger: GACCCACATATTGAAGAGCAATAGCTGGTTTAATTG...GGAGAGGAGGGAAGGCACTCCTGGGCCACAAACAAGTGTCTGAACTGTGTAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS GCA 72 bp | GTTAGACTTGGTGGGTACCACGAGGACATCAGGGGATaGTGTGGGAGTTCCATAGAGGGACTGAATACCATC | + |
Preference number: 6 (lower is better) Translates to: VRLGGYHEDIRG*CGSSIEGLNTI Trigger: GATGGTATTCAGTCCCTCTATGGAACTCCCACAGCATCCCCTGATGTCCTCGTGGTACCCACCAAGTCTAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS CAA 90 bp | TTTCTAGGTATTTCTGCAGAAGCTCCATACCAGCATCATCATCCCTaGCACTGTCATGCAATGGGTAGGATGAGCACACAACCACACACA | + |
Preference number: 6 (lower is better) Translates to: FLGISAEAPYQHHHP*HCHAMGRMSTQPHT Trigger: TGTGTGTGGTTGTGTGCTCATCCTACCCATTGCATGACAGTGCAAGGGATGATGATGCTGGTATGGAGCTTCTGCAGAAATACCTAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS CAA 72 bp | ATTTCTGCAGAAGCTCCATACCAGCATCATCATCCCTaGCACTGTCATGCAATGGGTAGGATGAGCACACAA | + |
Preference number: 6 (lower is better) Translates to: ISAEAPYQHHHP*HCHAMGRMSTQ Trigger: TTGTGTGCTCATCCTACCCATTGCATGACAGTGCAAGGGATGATGATGCTGGTATGGAGCTTCTGCAGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS TCA 72 bp | CCTGCTAGCTCCTCGTGCCCTCGTATAGCCCAGAACTaGTTTCCTTTAAAAATGAAAACAGTGTCTCTGTTA | + |
Preference number: 6 (lower is better) Translates to: PASSSCPRIAQN*FPLKMKTVSLL Trigger: TAACAGAGACACTGTTTTCATTTTTAAAGGAAATCAGTTCTGGGCTATACGAGGGCACGAGGAGCTAGCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS CCA 72 bp | AGTCCTCAGCTATCTTCCTGGGAAATCCTGGCTCCATaGATTGTTTCTTCTCATCAAACCTCCAGTATTTGT | + |
Preference number: 6 (lower is better) Translates to: SPQLSSWEILAP*IVSSHQTSSIC Trigger: ACAAATACTGGAGGTTTGATGAGAAGAAACAATCCATGGAGCCAGGATTTCCCAGGAAGATAGCTGAGGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |
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CDS CAA 72 bp | AACCAGCTATTGCTCTTCAATATGTGGGTCACTTTTTaGGCATTTGGGTCAAATTCCAACTGCGAAGATCCA | + |
Preference number: 6 (lower is better) Translates to: NQLLLFNMWVTF*AFGSNSNCEDP Trigger: TGGATCTTCGCAGTTGGAATTTGACCCAAATGCCAAAAAAGTGACCCACATATTGAAGAGCAATAGCTGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034497.8 |