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Pregenerated sensors for MMP24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027612

Ensembl transcript IDs: ENSMUST00000029141.6

Found 178 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGCCCAGGACAGAAGGCTGGCAGCTGGGTGCCAGCTACCCAACCTaGGGCATAGCCACCATCACTCCCTGCCCCGCACTCAGCCTAGAC +
Preference number: 1 (lower is better)
Translates to: LPRTEGWQLGASYPT*GIATITPCPALSLD
Trigger: GTCTAGGCTGAGTGCGGGGCAGGGAGTGATGGTGGCTATGCCCCAGGTTGGGTAGCTGGCACCCAGCTGCCAGCCTTCTGTCCTGGGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 90 bp GGCATAGCCACCATCACTCCCTGCCCCGCACTCAGCCTAGACCAGTaGACCCACCACTTCAGCTACACACGAACCTGGCCTAGGGCCCTG +
Preference number: 1 (lower is better)
Translates to: GIATITPCPALSLDQ*THHFSYTRTWPRAL
Trigger: CAGGGCCCTAGGCCAGGTTCGTGTGTAGCTGAAGTGGTGGGTGCACTGGTCTAGGCTGAGTGCGGGGCAGGGAGTGATGGTGGCTATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 90 bp TTGAGTAGAGAGAGGTCTGCCCAGGACAGAAGGCTGGCAGCTGGGTaGCAGCTACCCAACCTGGGGCATAGCCACCATCACTCCCTGCCC +
Preference number: 1 (lower is better)
Translates to: LSRERSAQDRRLAAG*QLPNLGHSHHHSLP
Trigger: GGGCAGGGAGTGATGGTGGCTATGCCCCAGGTTGGGTAGCTGGCACCCAGCTGCCAGCCTTCTGTCCTGGGCAGACCTCTCTCTACTCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 90 bp GGCTGCCTGCCTCCATCCCCTGCTCTTTCGCAACTGGCCTTGGAATaGCAGGAGCCAACAGGGAGCCTGCGGGGCCTAGAGCTTTCAAGA +
Preference number: 1 (lower is better)
Translates to: GCLPPSPALSQLALE*QEPTGSLRGLELSR
Trigger: TCTTGAAAGCTCTAGGCCCCGCAGGCTCCCTGTTGGCTCCTGGCATTCCAAGGCCAGTTGCGAAAGAGCAGGGGATGGAGGCAGGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 90 bp GGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTaGAAGGGCCCACTGATGGGGACACAAGACCCAGCCAGGGCCACC +
Preference number: 1 (lower is better)
Translates to: GGPEERTRRDSFLGP*KGPLMGTQDPARAT
Trigger: GGTGGCCCTGGCTGGGTCTTGTGTCCCCATCAGTGGGCCCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 90 bp AGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGGCCCACTaGTGGGGACACAAGACCCAGCCAGGGCCACCTGGATGGCAGGGG +
Preference number: 1 (lower is better)
Translates to: RGLEETVFSDPGRAH*WGHKTQPGPPGWQG
Trigger: CCCCTGCCATCCAGGTGGCCCTGGCTGGGTCTTGTGTCCCCATCAGTGGGCCCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 90 bp CAGATGACCGCAGGCAGAAGAATCCAAGATTGGAAGCCTCTAGGCTaGGCCCTCTCTGGGCCCGGCCCTGTGTCCCTCACATCTGCAGCC +
Preference number: 1 (lower is better)
Translates to: QMTAGRRIQDWKPLG*ALSGPGPVSLTSAA
Trigger: GGCTGCAGATGTGAGGGACACAGGGCCGGGCCCAGAGAGGGCTCAGCCTAGAGGCTTCCAATCTTGGATTCTTCTGCCTGCGGTCATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 90 bp GCAGGCTCAGAGGTCAGAGTTGGTATCTGTGACCCACTAGCACCCTaGTGGCCGCCTCATACCACCGTTGGGTTTGGCAGAGAGCCAGTG +
Preference number: 1 (lower is better)
Translates to: AGSEVRVGICDPLAP*WPPHTTVGFGREPV
Trigger: CACTGGCTCTCTGCCAAACCCAACGGTGGTATGAGGCGGCCATCAGGGTGCTAGTGGGTCACAGATACCAACTCTGACCTCTGAGCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 90 bp AGAGGAGACCTGGCGGGTGGAACAGGTTTCCTGAGGAATCCTCTATaGGCTAGCAGGGGAAACCCAGGCTTTTGCCCACTCTGTTGGCAT +
Preference number: 1 (lower is better)
Translates to: RGDLAGGTGFLRNPL*ASRGNPGFCPLCWH
Trigger: ATGCCAACAGAGTGGGCAAAAGCCTGGGTTTCCCCTGCTAGCCCATAGAGGATTCCTCAGGAAACCTGTTCCACCCGCCAGGTCTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 90 bp GAGATTTTACTCAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTaGTACAGGGCGAGAGACCACAGGGCAGGGGCAAAGCCCATGCAG +
Preference number: 1 (lower is better)
Translates to: EILLNNSQGIKSLCL*YRARDHRAGAKPMQ
Trigger: CTGCATGGGCTTTGCCCCTGCCCTGTGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTGAGTAAAATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 90 bp GGTCAAGATAGGAGCACAAACACCGACTCCAGGCTGGAGCTGAGTTaGCTCAGGGTCACTGGGGATGTAGATGGAGAACTTAAAAGGCTG +
Preference number: 1 (lower is better)
Translates to: GQDRSTNTDSRLELS*LRVTGDVDGELKRL
Trigger: CAGCCTTTTAAGTTCTCCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTGCTCCTATCTTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 90 bp GTGACAGGACATTTAAATATTCACGACATGACAGCTGGGTCCTTGTaGGATCCAGCTGGGCCACAGCCTTGCCTGCAGCATGTGACCCTA +
Preference number: 1 (lower is better)
Translates to: VTGHLNIHDMTAGSL*DPAGPQPCLQHVTL
Trigger: TAGGGTCACATGCTGCAGGCAAGGCTGTGGCCCAGCTGGATCTCACAAGGACCCAGCTGTCATGTCGTGAATATTTAAATGTCCTGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 90 bp GGGAGCCTGCCCTTGGCCAAAATGAGCAAGAACACAATGGTGAGATaGGACACAGTGGACCCACATAGGTGCTTCTGGGACAAGAGATTT +
Preference number: 1 (lower is better)
Translates to: GSLPLAKMSKNTMVR*DTVDPHRCFWDKRF
Trigger: AAATCTCTTGTCCCAGAAGCACCTATGTGGGTCCACTGTGTCCCATCTCACCATTGTGTTCTTGCTCATTTTGGCCAAGGGCAGGCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 90 bp AACACAATGGTGAGATGGGACACAGTGGACCCACATAGGTGCTTCTaGGACAAGAGATTTTACTCAACAACTCCCAGGGCATCAAGAGTC +
Preference number: 1 (lower is better)
Translates to: NTMVRWDTVDPHRCF*DKRFYSTTPRASRV
Trigger: GACTCTTGATGCCCTGGGAGTTGTTGAGTAAAATCTCTTGTCCCAGAAGCACCTATGTGGGTCCACTGTGTCCCATCTCACCATTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CAA 90 bp AGCCTGGGCTGCCTGCCTCCATCCCCTGCTCTTTCGCAACTGGCCTaGGAATGCCAGGAGCCAACAGGGAGCCTGCGGGGCCTAGAGCTT +
Preference number: 2 (lower is better)
Translates to: SLGCLPPSPALSQLA*ECQEPTGSLRGLEL
Trigger: AAGCTCTAGGCCCCGCAGGCTCCCTGTTGGCTCCTGGCATTCCAAGGCCAGTTGCGAAAGAGCAGGGGATGGAGGCAGGCAGCCCAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGCTTGCCTCAGAGGGCTaGGTCCCAGCCAGGACTGGA +
Preference number: 2 (lower is better)
Translates to: LSALPVVRPSPQATEDRLLASEG*VPARTG
Trigger: TCCAGTCCTGGCTGGGACCCAGCCCTCTGAGGCAAG...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CAA 90 bp CTCCTGGCACCATCCTTGCCTCCTGACAGGGCCTGGCCTATTCCCTaGAGTAGAGAGAGGTCTGCCCAGGACAGAAGGCTGGCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: LLAPSLPPDRAWPIP*SRERSAQDRRLAAG
Trigger: CCCAGCTGCCAGCCTTCTGTCCTGGGCAGACCTCTCTCTACTCAAGGGAATAGGCCAGGCCCTGTCAGGAGGCAAGGATGGTGCCAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGGCTGGCAGCTGGGTaGCAGCTACCCAACCTGGGG +
Preference number: 2 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCRLAAG*QLPNLG
Trigger: CCCCAGGTTGGGTAGCTGGCACCCAGCTGCCAGCCT...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCTCCTGGCACCATCCTTaGCTCCTGACAGGGCCTGGC +
Preference number: 2 (lower is better)
Translates to: GGSRILSALPVVRPSPQASWHHP*LLTGPG
Trigger: GCCAGGCCCTGTCAGGAGGCAAGGATGGTGCCAGGA...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGGAGGAAGGGCCTGGCTaGCCAGACCGGGTAGACAGA +
Preference number: 2 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWEEGPG*PDRVDR
Trigger: TCTGTCTACCCGGTCTGGCCAGCCAGGCCCTTCCTC...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACCCCTGCTGGCCCCAGTaGGCAGTGGCTAGAGCTGCC +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNPCWPQ*AVARAA
Trigger: GGCAGCTCTAGCCACTGCCCACTGGGGCCAGCAGGG...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGAGAGGGGACTGGGATTaGTGGCATCTTGGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: LSALPVVRPSPQATEDRLRGDWD*WHLGVG
Trigger: CCCCACCCCAAGATGCCACCAATCCCAGTCCCCTCT...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACCATCCTTGCCTCCTaGCAGGGCCTGGCCTATTCC +
Preference number: 2 (lower is better)
Translates to: GGSRILSALPVVRPSPQATILAS*QGLAYS
Trigger: GGAATAGGCCAGGCCCTGTCAGGAGGCAAGGATGGT...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGCTACACACGAACCTaGCCTAGGGCCCTGCTGGCC +
Preference number: 2 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCSYTRT*PRALLA
Trigger: GGCCAGCAGGGCCCTAGGCCAGGTTCGTGTGTAGCT...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CAA 90 bp CAAACTTGCATCCGCCCCCAGAACCAGGGTCAGCTCCTGCAGCTGTaGAGCCTCCTGAACAGGATGCCCGCTAGTATCAGGATGCCCGAG +
Preference number: 2 (lower is better)
Translates to: QTCIRPQNQGQLLQL*SLLNRMPASIRMPE
Trigger: CTCGGGCATCCTGATACTAGCGGGCATCCTGTTCAGGAGGCTCAACAGCTGCAGGAGCTGACCCTGGTTCTGGGGGCGGATGCAAGTTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTCACCACAGGATGCAATaGCCTCAGGGGCACCTCCTG +
Preference number: 2 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCHHRMQ*PQGHLL
Trigger: CAGGAGGTGCCCCTGAGGTCATTGCATCCTGTGGTG...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGGCAGACACCACAGGATaGAATGACCTCAGGGGCACC +
Preference number: 2 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWADTTG*NDLRGT
Trigger: GGTGCCCCTGAGGTCATTGCATCCTGTGGTGTCTGC...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGCTTGTGAGATCCAGCTaGGCCACAGCCTTGCCTGCA +
Preference number: 2 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWLVRSS*ATALPA
Trigger: TGCAGGCAAGGCTGTGGCCCAGCTGGATCTCACAAG...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CAA 90 bp TGGGCTGATGGACAAACAGATGACCGCAGGCAGAAGAATCCAAGATaGGAAGCCTCTAGGCTGAGCCCTCTCTGGGCCCGGCCCTGTGTC +
Preference number: 2 (lower is better)
Translates to: WADGQTDDRRQKNPR*EASRLSPLWARPCV
Trigger: GACACAGGGCCGGGCCCAGAGAGGGCTCAGCCTAGAGGCTTCCAATCTTGGATTCTTCTGCCTGCGGTCATCTGTTTGTCCATCAGCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGATCTTGGGGTGGGGGTaGGAGCTAGTGCTGGCTTGC +
Preference number: 2 (lower is better)
Translates to: REAQRRGLEETVFSDPGRILGWG*ELVLAC
Trigger: GCAAGCCAGCACTAGCTCTCACCCCCACCCCAAGAT...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACACAGCTGGGTCCTTGTaGGATCCAGCTGGGCCACAG +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNTAGSL*DPAGPQ
Trigger: CTGTGGCCCAGCTGGATCTCACAAGGACCCAGCTGT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCAGAGCTAGTGCTGGCTTaGCTCAGAGGGCTGGGTCCC +
Preference number: 2 (lower is better)
Translates to: QQLPGHQESLSVLQGERPELVLA*LRGLGP
Trigger: GGGACCCAGCCCTCTGAGGCAAGCCAGCACTAGCTC...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTGGCCCCAGTGGGCAGTaGCTAGAGCTGCCCCTCAGA +
Preference number: 2 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFGPSGQ*LELPLR
Trigger: TCTGAGGGGCAGCTCTAGCCACTGCCCACTGGGGCC...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCACCCAGGACAGAAGGCTaGCAGCTGGGTGCCAGCTAC +
Preference number: 2 (lower is better)
Translates to: QQLPGHQESLSVLQGERPPRTEG*QLGASY
Trigger: GTAGCTGGCACCCAGCTGCCAGCCTTCTGTCCTGGG...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGCCTGGCCTATTCCCTTaGGTAGAGAGAGGTCTGCCC +
Preference number: 2 (lower is better)
Translates to: REAQRRGLEETVFSDPGRPGLFP*VERGLP
Trigger: GGGCAGACCTCTCTCTACTCAAGGGAATAGGCCAGG...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCGAATGGTCACAAACTTaGATCCGCCCCCAGAACCAG +
Preference number: 2 (lower is better)
Translates to: GGSRILSALPVVRPSPQAEWSQT*IRPQNQ
Trigger: CTGGTTCTGGGGGCGGATGCAAGTTTGTGACCATTC...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACAGGCTGGAGCTGAGTTaGCTCAGGGTCACTGGGGAT +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNRLELS*LRVTGD
Trigger: ATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGCTGAGGAATCCTCTATaGGCTAGCAGGGGAAACCCA +
Preference number: 2 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWLRNPL*ASRGNP
Trigger: TGGGTTTCCCCTGCTAGCCCATAGAGGATTCCTCAG...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACGTCTCAGAGGAGACCTaGCGGGTGGAACAGGTTTCC +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNVSEET*RVEQVS
Trigger: GGAAACCTGTTCCACCCGCCAGGTCTCCTCTGAGAC...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTGCCTTTGCAGCACCGTaGTCCTTAGTGCCCAAGGAA +
Preference number: 2 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCAFAAP*SLVPKE
Trigger: TTCCTTGGGCACTAAGGACCACGGTGCTGCAAAGGC...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACATCAGGATGCCCGAGTaGCCTTTGCAGCACCGTGGT +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNIRMPE*PLQHRG
Trigger: ACCACGGTGCTGCAAAGGCCACTCGGGCATCCTGAT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCACAGGGGCAAAGCCCATaGAGGCTCAGAGGTCAGAGT +
Preference number: 2 (lower is better)
Translates to: QQLPGHQESLSVLQGERPQGQSP*RLRGQS
Trigger: ACTCTGACCTCTGAGCCTGCATGGGCTTTGCCCCTG...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTCCAGGACTGGAGCTGTaGTATCTTGCAGACACCACA +
Preference number: 2 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCPGLEL*YLADTT
Trigger: TGTGGTGTCTGCAAGATACCACAGCTCCAGTCCTGG...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTCTGACCAGCAGGTGTTaGCAGAGGGGACTGGGATTG +
Preference number: 2 (lower is better)
Translates to: LSAQGRATILASSPRQSPLTSRC*QRGLGL
Trigger: CAATCCCAGTCCCCTCTGCCAACACCTGCTGGTCAG...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACAGGAGACCTGGCGGGTaGAACAGGTTTCCTGAGGAA +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNRRPGG*NRFPEE
Trigger: TTCCTCAGGAAACCTGTTCCACCCGCCAGGTCTCCT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTTCACGACATGACAGCTaGGTCCTTGTGAGATCCAGC +
Preference number: 2 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCSRHDS*VLVRSS
Trigger: GCTGGATCTCACAAGGACCCAGCTGTCATGTCGTGA...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCACTCAGCCTAGACCAGTaGACCCACCACTTCAGCTAC +
Preference number: 2 (lower is better)
Translates to: QQLPGHQESLSVLQGERPLSLDQ*THHFSY
Trigger: GTAGCTGAAGTGGTGGGTGCACTGGTCTAGGCTGAG...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR GCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACGGAAACCCAGGCTTTTaGCCACTCTGTTGGCATCAG +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNGNPGF*PLCWHQ
Trigger: CTGATGCCAACAGAGTGGGCAAAAGCCTGGGTTTCC...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTTTTTGCCCACTCTGTTaGCATCAGGGGCACTGCAGC +
Preference number: 2 (lower is better)
Translates to: LSAQGRATILASSPRQSPFCPLC*HQGHCS
Trigger: GCTGCAGTGCCCCTGATGCCAACAGAGTGGGCAAAA...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACGTGGAACAGGTTTCCTaGGGAATCCTCTATGGGCTA +
Preference number: 2 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNVEQVS*GILYGL
Trigger: TAGCCCATAGAGGATTCCTCAGGAAACCTGTTCCAC...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTTGTGACCCTAAGTTCTaGGTCTCAGAGGAGACCTGG +
Preference number: 2 (lower is better)
Translates to: LSAQGRATILASSPRQSPCDPKF*VSEETW
Trigger: CCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACA...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR TCA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGACAGTCACCTCTAGCTaGCCTAAAGCCTCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQTVTSS*PKASSS
Trigger: GCTACTTGAGGCTTTAGGTCAGCTAGAGGTGACTGT...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTCCTCCTGACAGGGCCTaGCCTATTCCCTTGAGTAGA +
Preference number: 2 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFPPDRA*PIPLSR
Trigger: TCTACTCAAGGGAATAGGCCAGGCCCTGTCAGGAGG...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp ACACACGAACCTGGCCTAGGGCCCTGCTGGCCCCAGTaGGCAGTGGCTAGAGCTGCCCCTCAGACCCTGGTG +
Preference number: 3 (lower is better)
Translates to: THEPGLGPCWPQ*AVARAAPQTLV
Trigger: CACCAGGGTCTGAGGGGCAGCTCTAGCCACTGCCCACTGGGGCCAGCAGGGCCCTAGGCCAGGTTCGTGTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp ACAGAAGGCTGGCAGCTGGGTGCCAGCTACCCAACCTaGGGCATAGCCACCATCACTCCCTGCCCCGCACTC +
Preference number: 3 (lower is better)
Translates to: TEGWQLGASYPT*GIATITPCPAL
Trigger: GAGTGCGGGGCAGGGAGTGATGGTGGCTATGCCCCAGGTTGGGTAGCTGGCACCCAGCTGCCAGCCTTCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 72 bp CCTCCATCCCCTGCTCTTTCGCAACTGGCCTTGGAATaGCAGGAGCCAACAGGGAGCCTGCGGGGCCTAGAG +
Preference number: 3 (lower is better)
Translates to: PPSPALSQLALE*QEPTGSLRGLE
Trigger: CTCTAGGCCCCGCAGGCTCCCTGTTGGCTCCTGGCATTCCAAGGCCAGTTGCGAAAGAGCAGGGGATGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGAGAGCTAGTGCTGGCTaGCCTCAGAGGGCTGGGTCC +
Preference number: 3 (lower is better)
Translates to: LSALPVVRPSPQATEDRLRASAG*PQRAGS
Trigger: GGACCCAGCCCTCTGAGGCAAGCCAGCACTAGCTCT...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGAGCTGGGCCACAGCCTaGCCTGCAGCATGTGACCCT +
Preference number: 3 (lower is better)
Translates to: LSALPVVRPSPQATEDRLSWATA*PAACDP
Trigger: AGGGTCACATGCTGCAGGCAAGGCTGTGGCCCAGCT...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCCAGAGGGGACTGGGATaGGTGGCATCTTGGGGTGGG +
Preference number: 3 (lower is better)
Translates to: GGSRILSALPVVRPSPQAQRGLG*VASWGG
Trigger: CCCACCCCAAGATGCCACCAATCCCAGTCCCCTCTG...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp GCAGGCAGAAGAATCCAAGATTGGAAGCCTCTAGGCTaGGCCCTCTCTGGGCCCGGCCCTGTGTCCCTCACA +
Preference number: 3 (lower is better)
Translates to: AGRRIQDWKPLG*ALSGPGPVSLT
Trigger: TGTGAGGGACACAGGGCCGGGCCCAGAGAGGGCTCAGCCTAGAGGCTTCCAATCTTGGATTCTTCTGCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 72 bp ACCATCACTCCCTGCCCCGCACTCAGCCTAGACCAGTaGACCCACCACTTCAGCTACACACGAACCTGGCCT +
Preference number: 3 (lower is better)
Translates to: TITPCPALSLDQ*THHFSYTRTWP
Trigger: AGGCCAGGTTCGTGTGTAGCTGAAGTGGTGGGTGCACTGGTCTAGGCTGAGTGCGGGGCAGGGAGTGATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp CACCTCCTGGCACCATCCTTGCCTCCTGACAGGGCCTaGCCTATTCCCTTGAGTAGAGAGAGGTCTGCCCAG +
Preference number: 3 (lower is better)
Translates to: HLLAPSLPPDRA*PIPLSRERSAQ
Trigger: CTGGGCAGACCTCTCTCTACTCAAGGGAATAGGCCAGGCCCTGTCAGGAGGCAAGGATGGTGCCAGGAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCACTCCTGGCACCATCCTaGCCTCCTGACAGGGCCTGG +
Preference number: 3 (lower is better)
Translates to: QQLPGHQESLSVLQGERPLLAPS*PPDRAW
Trigger: CCAGGCCCTGTCAGGAGGCAAGGATGGTGCCAGGAG...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGGGGAAACCCAGGCTTTaGCCCACTCTGTTGGCATCA +
Preference number: 3 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWGKPRL*PTLLAS
Trigger: TGATGCCAACAGAGTGGGCAAAAGCCTGGGTTTCCC...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGGCCTGGCCTATTCCCTaGAGTAGAGAGAGGTCTGCC +
Preference number: 3 (lower is better)
Translates to: REAQRRGLEETVFSDPGRAWPIP*SRERSA
Trigger: GGCAGACCTCTCTCTACTCAAGGGAATAGGCCAGGC...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGTCTGACCAGCAGGTGTaGGCAGAGGGGACTGGGATT +
Preference number: 3 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQSDQQV*AEGTGI
Trigger: AATCCCAGTCCCCTCTGCCAACACCTGCTGGTCAGA...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGAGAATGGTCACAAACTaGCATCCGCCCCCAGAACCA +
Preference number: 3 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWRMVTN*HPPPEP
Trigger: TGGTTCTGGGGGCGGATGCAAGTTTGTGACCATTCT...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGACTAAATCTCTGCAGTaGTTCCCCGCCTGCCCCAGG +
Preference number: 3 (lower is better)
Translates to: REAQRRGLEETVFSDPGRTKSLQ*FPACPR
Trigger: CCTGGGGCAGGCGGGGAACAACTGCAGAGATTTAGT...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp GTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTCCTaGGGAATCCTCTATGGGCTAGCAGGGGAAACCCAG +
Preference number: 3 (lower is better)
Translates to: VSEETWRVEQVS*GILYGLAGETQ
Trigger: CTGGGTTTCCCCTGCTAGCCCATAGAGGATTCCTCAGGAAACCTGTTCCACCCGCCAGGTCTCCTCTGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp GCCACAGCCTTGCCTGCAGCATGTGACCCTAAGTTCTaGGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTT +
Preference number: 3 (lower is better)
Translates to: ATALPAACDPKF*VSEETWRVEQV
Trigger: AACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATGCTGCAGGCAAGGCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp GAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTaGAAGGGCCCACTGATGGGGACACAAGACCCAGCC +
Preference number: 3 (lower is better)
Translates to: EERTRRDSFLGP*KGPLMGTQDPA
Trigger: GGCTGGGTCTTGTGTCCCCATCAGTGGGCCCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTTGGAGCTGTGGTATCTaGCAGACACCACAGGATGCA +
Preference number: 3 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCWSCGI*QTPQDA
Trigger: TGCATCCTGTGGTGTCTGCAAGATACCACAGCTCCA...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR-3UTR CAA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTCTTTTGCCCACTCTGTaGGCATCAGGGGCACTGCAG +
Preference number: 3 (lower is better)
Translates to: LSAQGRATILASSPRQSPLLPTL*ASGALQ
Trigger: CTGCAGTGCCCCTGATGCCAACAGAGTGGGCAAAAG...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp CGCCTCATACCACCGTTGGGTTTGGCAGAGAGCCAGTaGGTGACACTTGCACCCAGTGGTTTTGGAGCAAGC +
Preference number: 3 (lower is better)
Translates to: RLIPPLGLAESQ*VTLAPSGFGAS
Trigger: GCTTGCTCCAAAACCACTGGGTGCAAGTGTCACTCACTGGCTCTCTGCCAAACCCAACGGTGGTATGAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 72 bp AGGAGCACAAACACCGACTCCAGGCTGGAGCTGAGTTaGCTCAGGGTCACTGGGGATGTAGATGGAGAACTT +
Preference number: 3 (lower is better)
Translates to: RSTNTDSRLELS*LRVTGDVDGEL
Trigger: AAGTTCTCCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 72 bp ACCGTTGGGTTTGGCAGAGAGCCAGTGAGTGACACTTaGACCCAGTGGTTTTGGAGCAAGCCAAACCAAGAC +
Preference number: 3 (lower is better)
Translates to: TVGFGREPVSDT*TQWFWSKPNQD
Trigger: GTCTTGGTTTGGCTTGCTCCAAAACCACTGGGTGCAAGTGTCACTCACTGGCTCTCTGCCAAACCCAACGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp TCATACCACCGTTGGGTTTGGCAGAGAGCCAGTGAGTaGCACTTGCACCCAGTGGTTTTGGAGCAAGCCAAA +
Preference number: 3 (lower is better)
Translates to: SYHRWVWQRASE*HLHPVVLEQAK
Trigger: TTTGGCTTGCTCCAAAACCACTGGGTGCAAGTGTCACTCACTGGCTCTCTGCCAAACCCAACGGTGGTATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR GCA 72 bp ACATTAATGAAGGGGAGTAGAGAATGGTCACAAACTTaGATCCGCCCCCAGAACCAGGGTCAGCTCCTGCAG +
Preference number: 3 (lower is better)
Translates to: TLMKGSREWSQT*IRPQNQGQLLQ
Trigger: CTGCAGGAGCTGACCCTGGTTCTGGGGGCGGATGCAAGTTTGTGACCATTCTCTACTCCCCTTCATTAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp GTACAAAGGCTGATCAGTTTAAAATGTGACCGACACTaGGATGCTGTGATGTCACCCAGGCCGAGGGGAAGC +
Preference number: 3 (lower is better)
Translates to: VQRLISLKCDRH*DAVMSPRPRGS
Trigger: GCTTCCCCTCGGCCTGGGTGACATCACAGCATCTCAGTGTCGGTCACATTTTAAACTGATCAGCCTTTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp GTGAGATGGGACACAGTGGACCCACATAGGTGCTTCTaGGACAAGAGATTTTACTCAACAACTCCCAGGGCA +
Preference number: 3 (lower is better)
Translates to: VRWDTVDPHRCF*DKRFYSTTPRA
Trigger: TGCCCTGGGAGTTGTTGAGTAAAATCTCTTGTCCCAGAAGCACCTATGTGGGTCCACTGTGTCCCATCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp AGAGAGCCAGTGAGTGACACTTGCACCCAGTGGTTTTaGAGCAAGCCAAACCAAGACTTAGGAACTGTCAGA +
Preference number: 3 (lower is better)
Translates to: REPVSDTCTQWF*SKPNQDLGTVR
Trigger: TCTGACAGTTCCTAAGTCTTGGTTTGGCTTGCTCCAAAACCACTGGGTGCAAGTGTCACTCACTGGCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CCA 72 bp TTTGGCAGAGAGCCAGTGAGTGACACTTGCACCCAGTaGTTTTGGAGCAAGCCAAACCAAGACTTAGGAACT +
Preference number: 3 (lower is better)
Translates to: FGREPVSDTCTQ*FWSKPNQDLGT
Trigger: AGTTCCTAAGTCTTGGTTTGGCTTGCTCCAAAACCACTGGGTGCAAGTGTCACTCACTGGCTCTCTGCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR TCA 72 bp CATACTGGCCTCATCACCAAGACAGTCACCTCTAGCTaGCCTAAAGCCTCAAGTAGCCTTTGCAAAATGGGA +
Preference number: 3 (lower is better)
Translates to: HTGLITKTVTSS*PKASSSLCKMG
Trigger: TCCCATTTTGCAAAGGCTACTTGAGGCTTTAGGTCAGCTAGAGGTGACTGTCTTGGTGATGAGGCCAGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp GCAGCTGGGTGCCAGCTACCCAACCTGGGGCATAGCCACCATCACTCCCTGCCCGGTAGCCAGGGTCTGTaGCTCGCCGCTCCTCGCTGT +
Preference number: 4 (lower is better)
Translates to: AAGCQLPNLGHSHHHSLPGSQGL*LAAPRC
Trigger: ACAGCGAGGAGCGGCGAGCCACAGACCCTGGCTACC...GGGCAGGGAGTGATGGTGGCTATGCCCCAGGTTGGGTAGCTGGCACCCAGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp GCAGCTGGGTGCCAGCTACCCAACCTGGGGCATAGCCACCATCACTCCCTGCCCTGCCCTTCCACACGGTaGTGGGCTTGGGGTAGCCAG +
Preference number: 4 (lower is better)
Translates to: AAGCQLPNLGHSHHHSLPCPSTR*WAWGSQ
Trigger: CTGGCTACCCCAAGCCCATCACCGTGTGGAAGGGCA...GGGCAGGGAGTGATGGTGGCTATGCCCCAGGTTGGGTAGCTGGCACCCAGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGGGCAGAGGGACAGTGTaGAGGGGACAACCACAGCCA +
Preference number: 4 (lower is better)
Translates to: LSALPVVRPSPQATEDRLGRGTV*RGQPQP
Trigger: TGGCTGTGGTTGTCCCCTGCACACTGTCCCTCTGCC...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGGTTTGGCACCTGGAGTaGATGGCCGGTCCCCAAGAG +
Preference number: 4 (lower is better)
Translates to: LSALPVVRPSPQATEDRLVWHLE*MAGPQE
Trigger: CTCTTGGGGACCGGCCATCCACTCCAGGTGCCAAAC...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTGCCGCTTATAGTAGGTaGCGGGCTGAGGACCCGCCT +
Preference number: 4 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCAAYSR*RAEDPP
Trigger: AGGCGGGTCCTCAGCCCGTCACCTACTATAAGCGGC...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CAA 72 bp GGGCTGGGTCCCAGCCAGGACTGGAGCTGTGGTATCTaGCAGACACCACAGGATGCAATGACCTCAGGGGCA +
Preference number: 4 (lower is better)
Translates to: GLGPSQDWSCGI*QTPQDAMTSGA
Trigger: TGCCCCTGAGGTCATTGCATCCTGTGGTGTCTGCAAGATACCACAGCTCCAGTCCTGGCTGGGACCCAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACCCTGCACCCGGTTATTaGGCAGGCGCCAGAACCAGC +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNPAPGY*AGARTS
Trigger: GCTGGTTCTGGCGCCTGCGCAATAACCGGGTGCAGG...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGAGCTCCCCCAAGCTGTaGGGGTACCCAGGTTCCACC +
Preference number: 4 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQSSPKL*GYPGST
Trigger: GGTGGAACCTGGGTACCCCCACAGCTTGGGGGAGCT...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGCACACATCGAAAGCCTaGCGAATAGCCTTCCGTGTG +
Preference number: 4 (lower is better)
Translates to: LSALPVVRPSPQATEDRLHTSKA*RIAFRV
Trigger: CACACGGAAGGCTATTCGTCAGGCTTTCGATGTGTG...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTCATAGGCTGCGTCTATaGGGGCGGGCAGGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFHRLRL*GRAGPS
Trigger: GGAAGGGCCTGCCCGCCCGCATAGACGCAGCCTATG...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGTCCAAGCCCAGTGCATaGCCCAGTTCATGCACGGCC +
Preference number: 4 (lower is better)
Translates to: REAQRRGLEETVFSDPGRSKPSA*PSSCTA
Trigger: GGCCGTGCATGAACTGGGCCATGCACTGGGCTTGGA...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGCTCTCAGATGGCGAGTaGATCCTGCGGACCGGGAGT +
Preference number: 4 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQLSDGE*ILRTGS
Trigger: ACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAG...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTGTTGGGTTTGGCACCTaGAGTGGATGGCCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: LSAQGRATILASSPRQSPVGFGT*SGWPVP
Trigger: GGGGACCGGCCATCCACTCCAGGTGCCAAACCCAAC...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTGTTGCGTGGGTAGCCTaGCTCCACGCTCAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCVAWVA*LHAQFL
Trigger: CAGAAACTGAGCGTGGAGCCAGGCTACCCACGCAAC...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACAGCTCTTTCATAGGCTaGGTCTATGCGGGCGGGCAG +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNSSFIG*VYAGGQ
Trigger: CTGCCCGCCCGCATAGACGCAGCCTATGAAAGAGCT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACGTGCTTCCTCTCAGATaGCGAGTGGATCCTGCGGAC +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNVLPLR*RVDPAD
Trigger: GTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCAC...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTACGCAGGATGTTGCGTaGGTAGCCTGGCTCCACGCT +
Preference number: 4 (lower is better)
Translates to: LSAQGRATILASSPRQSPTQDVA*VAWLHA
Trigger: AGCGTGGAGCCAGGCTACCCACGCAACATCCTGCGT...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp ATAGCCACCATCACTCCCTGCCCCGCACTCAGCCTAGACCAGTGCACCCACCACTCATCTGAATCAAAGTaGGTGTCTCCTCCGATCCCT +
Preference number: 4 (lower is better)
Translates to: IATITPCPALSLDQCTHHSSESK*VSPPIP
Trigger: AGGGATCGGAGGAGACACTCACTTTGATTCAGATGA...GTGGTGGGTGCACTGGTCTAGGCTGAGTGCGGGGCAGGGAGTGATGGTGGCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCCGTCCAGGGTTCATCTaGATCAAAGTGAGTGTCTCC +
Preference number: 4 (lower is better)
Translates to: GGSRILSALPVVRPSPQARPGFI*IKVSVS
Trigger: GGAGACACTCACTTTGATTCAGATGAACCCTGGACG...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACCTGGGGTCATTAGAGTaGTCCAAGCCCAGTGCATGG +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNLGSLE*SKPSAW
Trigger: CCATGCACTGGGCTTGGAGCACTCTAATGACCCCAG...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCACGCAGATGTTGGGTTTaGCACCTGGAGTGGATGGCC +
Preference number: 4 (lower is better)
Translates to: QQLPGHQESLSVLQGERPRRCWV*HLEWMA
Trigger: GGCCATCCACTCCAGGTGCCAAACCCAACATCTGCG...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACACTGTTCGATCTGCATaGGGTAGCCTTCCTGCACCC +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNTVRSA*GSLPAP
Trigger: GGGTGCAGGAAGGCTACCCCATGCAGATCGAACAGT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
3UTR CAA 72 bp TTTGCCCACTCTGTTGGCATCAGGGGCACTGCAGCCTaGGAGGATAGTAGGGTAGGGATGAGGGGACATCTG +
Preference number: 4 (lower is better)
Translates to: FAHSVGIRGTAA*EDSRVGMRGHL
Trigger: CAGATGTCCCCTCATCCCTACCCTACTATCCTCCAAGGCTGCAGTGCCCCTGATGCCAACAGAGTGGGCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACGATCCAACACACCGGTaGCTGGGATCCCGTAAAACT +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNDPTHR*LGSRKT
Trigger: AGTTTTACGGGATCCCAGTCACCGGTGTGTTGGATC...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTCACTCGATTGTTGTCTaGTCCAACACACCGGTGACT +
Preference number: 4 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCHSIVV*SNTPVT
Trigger: AGTCACCGGTGTGTTGGATCAGACAACAATCGAGTG...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTCCTTCCGGTCACTTTTaGTCTCATGGTATGGCACCT +
Preference number: 4 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCPSGHF*SHGMAP
Trigger: AGGTGCCATACCATGAGATCAAAAGTGACCGGAAGG...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCACAGAGGACAGGCTGGAAGATCATGATGTCTaGCTCCTTCCGGTCACTTTT +
Preference number: 4 (lower is better)
Translates to: LSALPVVRPSPQATEDRLEDHDV*LLPVTF
Trigger: AAAAGTGACCGGAAGGAGGCAGACATCATGATCTTC...CAGCCTGTCCTCTGTGGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTGTGCTCCAAGCCCAGTaGATGGCCCAGTTCATGCAC +
Preference number: 4 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFVLQAQ*MAQFMH
Trigger: GTGCATGAACTGGGCCATGCACTGGGCTTGGAGCAC...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTCGCTCTACCTCCTTCTaGTTGCAGCCCATCCAGTCA +
Preference number: 4 (lower is better)
Translates to: LSAQGRATILASSPRQSPRSTSF*LQPIQS
Trigger: TGACTGGATGGGCTGCAAGCAGAAGGAGGTAGAGCG...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTATCTTCTGGATGCCCTaGAGATCGTCCTGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: LSAQGRATILASSPRQSPIFWMP*RSSCGS
Trigger: GCTACCGCAGGACGATCTCCAGGGCATCCAGAAGAT...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTCTCCAGAGGCTCAGCTaGGGGTCCGTAAATCTTCTG +
Preference number: 4 (lower is better)
Translates to: LSAQGRATILASSPRQSPLQRLS*GSVNLL
Trigger: CAGAAGATTTACGGACCCCCAGCTGAGCCTCTGGAG...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CAACAACTCCCAGGGCATCAAGAGTCTCTGTCTGTGCTACAGGGCGAGAGACCAAGCGTTCACAGAGCCTaGCACGTCATCGATGGTCAC +
Preference number: 4 (lower is better)
Translates to: QQLPGHQESLSVLQGERPSVHRA*HVIDGH
Trigger: GTGACCATCGATGACGTGCCAGGCTCTGTGAACGCT...TGGTCTCTCGCCCTGTAGCACAGACAGAGACTCTTGATGCCCTGGGAGTTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCAGTACTTGTCTCCTTTaGAGAAGACGAATCTCCCGT +
Preference number: 4 (lower is better)
Translates to: GGSRILSALPVVRPSPQASTCLL*RRRISR
Trigger: ACGGGAGATTCGTCTTCTTCAAAGGAGACAAGTACT...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCCAGCTCACCCACCTTTaGGGTATAATTGTGAATGCT +
Preference number: 4 (lower is better)
Translates to: GGSRILSALPVVRPSPQAQLTHL*GIIVNA
Trigger: AGCATTCACAATTATACCCCAAAGGTGGGTGAGCTG...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGTGTGAATGCTGTAGGTaGTGTGTTTCTGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: REAQRRGLEETVFSDPGRCECCR*CVSAST
Trigger: AGTGGAGGCAGAAACACATCACCTACAGCATTCACA...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTCATCGATGGTCACCATaGTGTCCACATCATCCTGGG +
Preference number: 4 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFHRWSP*CPHHPG
Trigger: CCCAGGATGATGTGGACATCATGGTGACCATCGATG...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTAGAATGCAACGCAGATaGCCGCGACTCATAGGGAAG +
Preference number: 4 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFRMQRR*PRLIGK
Trigger: CTTCCCTATGAGTCGCGGGCATCTGCGTTGCATTCT...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCTTTGATCTCATGGTATaGCACCTCTTCAAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: GGSRILSALPVVRPSPQAFDLMV*HLFKGQ
Trigger: CTGACCTTTGAAGAGGTGCCATACCATGAGATCAAA...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACAGGTCATTGCCATCATaGTTGGCATTTCCTAGCGTC +
Preference number: 4 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNRSLPS*LAFPSV
Trigger: GACGCTAGGAAATGCCAACCATGATGGCAATGACCT...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR GCA 90 bp CTTAGTGCCCAAGGAAGGGCCACCATACTGGCCTCATCACCAAGACAGTCACCTTATTTCTCCTCCTCCTaGTCAAGTGGGGATGATCAG +
Preference number: 4 (lower is better)
Translates to: LSAQGRATILASSPRQSPYFSSS*SSGDDQ
Trigger: CTGATCATCCCCACTTGAGCAGGAGGAGGAGAAATA...AGGTGACTGTCTTGGTGATGAGGCCAGTATGGTGGCCCTTCCTTGGGCACTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR TCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTAGTATCGTTCGCCTTTaGAGAAGTAGGTTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFSIVRL*RSRFCP
Trigger: TGGGCAAAACCTACTTCTTCAAAGGCGAACGATACT...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CCA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTTCACTTTTGATCTCATaGTATGGCACCTCTTCAAAG +
Preference number: 4 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFSLLIS*YGTSSK
Trigger: CTTTGAAGAGGTGCCATACCATGAGATCAAAAGTGA...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 90 bp GGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTTGGGTGCCGCTCGTaGTTCCTCTCAGATGGCGAGTGGATCCTGCGGACCGGGAGTGTA +
Preference number: 5 (lower is better)
Translates to: GRSPRGGRGGLGCRS*FLSDGEWILRTGSV
Trigger: TACACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 90 bp GGAGTGGATGGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTTGGGTaGCGCTCGTGCTTCCTCTCAGATGGCGAGTGGATCCTGCGGACC +
Preference number: 5 (lower is better)
Translates to: GVDGRSPRGGRGGLG*RSCFLSDGEWILRT
Trigger: GGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCACTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp CGTGGGGGCCTTGGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGTaGATCCTGCGGACCGGGAGTGTAGGGAGGGGCCTTGTGGGCTCC +
Preference number: 5 (lower is better)
Translates to: RGGLGCRSCFLSDGE*ILRTGSVGRGLVGS
Trigger: GGAGCCCACAAGGCCCCTCCCTACACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp AGGCGGCCGTGGGGGCCTTGGGTGCCGCTCGTGCTTCCTCTCAGATaGCGAGTGGATCCTGCGGACCGGGAGTGTAGGGAGGGGCCTTGT +
Preference number: 5 (lower is better)
Translates to: RRPWGPWVPLVLPLR*RVDPADRECREGPC
Trigger: ACAAGGCCCCTCCCTACACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp ACCTGGAGTGGATGGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTTaGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGTGGATCCTGCG +
Preference number: 5 (lower is better)
Translates to: TWSGWPVPKRRPWGP*VPLVLPLRWRVDPA
Trigger: CGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCACTCCAGGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp GGGTTTGGCACCTGGAGTGGATGGCCGGTCCCCAAGAGGCGGCCGTaGGGGCCTTGGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGTG +
Preference number: 5 (lower is better)
Translates to: GFGTWSGWPVPKRRP*GPWVPLVLPLRWRV
Trigger: CACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCACTCCAGGTGCCAAACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp GGTGGCTCTAGAATCCTCTCTGCTTTACCTGTAGTCAGGCCGAGCCCCCAGGCCGCTGATGAAGGCCCCTaGCGGAGCCTGCGGGATGCC +
Preference number: 5 (lower is better)
Translates to: GGSRILSALPVVRPSPQAADEGP*RSLRDA
Trigger: GGCATCCCGCAGGCTCCGCAAGGGGCCTTCATCAGC...GGCCTGGGGGCTCGGCCTGACTACAGGTAAAGCAGAGAGGATTCTAGAGCCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp CGTCTATGCGGGCGGGCAGGCCCTTCCAGAACTGTTCGATCTGCATaGGGTAGCCTTCCTGCACCCGGTTATTGCGCAGGCGCCAGAACC +
Preference number: 5 (lower is better)
Translates to: RLCGRAGPSRTVRSA*GSLPAPGYCAGART
Trigger: GGTTCTGGCGCCTGCGCAATAACCGGGTGCAGGAAGGCTACCCCATGCAGATCGAACAGTTCTGGAAGGGCCTGCCCGCCCGCATAGACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGTCCTGCACCCGGTTATaGCGCAGGCGCCAGAACCAG +
Preference number: 5 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWSCTRL*RRRQNQ
Trigger: CTGGTTCTGGCGCCTGCGCAATAACCGGGTGCAGGA...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS TCA 90 bp CAGCCACAGCGTTCACAGAGCCTGGCACGTCATCGATGGTCACCATaGTGTCCACATCATCCTGGGGCAGCCTCCGCTCCTTACGCCGCT +
Preference number: 5 (lower is better)
Translates to: QPQRSQSLARHRWSP*CPHHPGAASAPYAA
Trigger: AGCGGCGTAAGGAGCGGAGGCTGCCCCAGGATGATGTGGACATCATGGTGACCATCGATGACGTGCCAGGCTCTGTGAACGCTGTGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp ATAGCCACCATCACTCCCTGCCCCGCACTCAGCCTAGACCAGTGCACCCACCACTCTACCTCCTTCTGCTaGCAGCCCATCCAGTCACGC +
Preference number: 5 (lower is better)
Translates to: IATITPCPALSLDQCTHHSTSFC*QPIQSR
Trigger: GCGTGACTGGATGGGCTGCAAGCAGAAGGAGGTAGA...GTGGTGGGTGCACTGGTCTAGGCTGAGTGCGGGGCAGGGAGTGATGGTGGCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp GAGCCTGGCACGTCATCGATGGTCACCATGATGTCCACATCATCCTaGGGCAGCCTCCGCTCCTTACGCCGCTCTACCTCCTTCTGCTTG +
Preference number: 5 (lower is better)
Translates to: EPGTSSMVTMMSTSS*GSLRSLRRSTSFCL
Trigger: CAAGCAGAAGGAGGTAGAGCGGCGTAAGGAGCGGAGGCTGCCCCAGGATGATGTGGACATCATGGTGACCATCGATGACGTGCCAGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp GCAGCTGGGTGCCAGCTACCCAACCTGGGGCATAGCCACCATCACTCCCTGCCCTCATTGCCATCATGGTaGGCATTTCCTAGCGTCCAG +
Preference number: 5 (lower is better)
Translates to: AAGCQLPNLGHSHHHSLPSLPSW*AFPSVQ
Trigger: CTGGACGCTAGGAAATGCCAACCATGATGGCAATGA...GGGCAGGGAGTGATGGTGGCTATGCCCCAGGTTGGGTAGCTGGCACCCAGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS TCA 90 bp CTGTGGCTCGCCGCTCCTCGCTGTAGCGCCAGTATCGTTCGCCTTTaGAGAAGTAGGTTTTGCCCACAGGTTCCCAGCGCAGAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: LWLAAPRCSASIVRL*RSRFCPQVPSAELC
Trigger: ACACAGCTCTGCGCTGGGAACCTGTGGGCAAAACCTACTTCTTCAAAGGCGAACGATACTGGCGCTACAGCGAGGAGCGGCGAGCCACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 90 bp GGACAGTGTGCAGGGGACAACCACAGCCACAGCGTTCACAGAGCCTaGCACGTCATCGATGGTCACCATGATGTCCACATCATCCTGGGG +
Preference number: 5 (lower is better)
Translates to: GQCAGDNHSHSVHRA*HVIDGHHDVHIILG
Trigger: CCCCAGGATGATGTGGACATCATGGTGACCATCGATGACGTGCCAGGCTCTGTGAACGCTGTGGCTGTGGTTGTCCCCTGCACACTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGTCGCAGATGTTGGGTTaGGCACCTGGAGTGGATGGC +
Preference number: 5 (lower is better)
Translates to: REAQRRGLEETVFSDPGRSQMLG*APGVDG
Trigger: GCCATCCACTCCAGGTGCCAAACCCAACATCTGCGA...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAGATGGTCATCCACTCGATTGTaGTCTGATCCAACACACCGG +
Preference number: 5 (lower is better)
Translates to: HRLQAGAELPQGHWGCRWSSTRL*SDPTHR
Trigger: CCGGTGTGTTGGATCAGACAACAATCGAGTGGATGA...CCATCTACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGTTGCCATCGCAGATGTaGGGTTTGGCACCTGGAGTG +
Preference number: 5 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQLPSQM*GLAPGV
Trigger: CACTCCAGGTGCCAAACCCAACATCTGCGATGGCAA...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTAAGAGGGCCACTGTGTaGAAGTTGCCATCGCAGATG +
Preference number: 5 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCKRATV*KLPSQM
Trigger: CATCTGCGATGGCAACTTCAACACAGTGGCCCTCTT...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGTCGTCCTGCGGTAGCTaGAAGTTGTGTGTCTCCATG +
Preference number: 5 (lower is better)
Translates to: REAQRRGLEETVFSDPGRSSCGS*KLCVSM
Trigger: CATGGAGACACACAACTTCAAGCTACCGCAGGACGA...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGCCAGCTCACCCACCTTaGGGGTATAATTGTGAATGC +
Preference number: 5 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQPAHPP*GYNCEC
Trigger: GCATTCACAATTATACCCCAAAGGTGGGTGAGCTGG...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGCAGAACCAGCGATCCTaGAACACAAACATCTCCCCT +
Preference number: 5 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQQNQRS*NTNISP
Trigger: AGGGGAGATGTTTGTGTTCAAGGATCGCTGGTTCTG...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGACCAGGAAGAGGTCATaGCCATCATGGTTGGCATTT +
Preference number: 5 (lower is better)
Translates to: REAQRRGLEETVFSDPGRTRKRS*PSWLAF
Trigger: AAATGCCAACCATGATGGCAATGACCTCTTCCTGGT...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CACAAACACCGACTCCAGGCTGGAGCTGAGTTGCCTCAGGGTCACTGGGGATGTCGCCTTGTTCTTGAATaGGAAGATAGTGTAGAGCAG +
Preference number: 5 (lower is better)
Translates to: HKHRLQAGAELPQGHWGCRLVLE*EDSVEQ
Trigger: CTGCTCTACACTATCTTCCAATTCAAGAACAAGGCG...ACATCCCCAGTGACCCTGAGGCAACTCAGCTCCAGCCTGGAGTCGGTGTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGGGAGGCCCAGAGGAGAGGACTAGAAGAGACAGTTTTCTCGGACCCTGGAAGGTCTTCATCCACTCGATaGTTGTCTGATCCAACACAC +
Preference number: 5 (lower is better)
Translates to: REAQRRGLEETVFSDPGRSSSTR*LSDPTH
Trigger: GTGTGTTGGATCAGACAACAATCGAGTGGATGAAGA...CCTTCCAGGGTCCGAGAAAACTGTCTCTTCTAGTCCTCTCCTCTGGGCCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTTCCTTCCGGTCACTTTaGATCTCATGGTATGGCACC +
Preference number: 5 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFSFRSL*ISWYGT
Trigger: GGTGCCATACCATGAGATCAAAAGTGACCGGAAGGA...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp AGCCTGGGGCTGCTACCAGCTGGGAAGAGGACCCTTTTTCTAAGAGCAGTGCAGTCCACCGTCACTTCTTaGAAAACCCAGTACTTGTCT +
Preference number: 5 (lower is better)
Translates to: SLGLLPAGKRTLFLRAVQSTVTS*KTQYLS
Trigger: AGACAAGTACTGGGTTTTCAAAGAAGTGACGGTGGA...CTGCACTGCTCTTAGAAAAAGGGTCCTCTTCCCAGCTGGTAGCAGCCCCAGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 90 bp TCCACTTCTGTCCAGTTAGGGCATATCGCTTATTTCTCCTCCTCCTaGTCAAGTGGGGATGATCAGGGACGCCACATCGAGGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: STSVQLGHIAYFSSS*SSGDDQGRHIEVSS
Trigger: TGAAGAAACCTCGATGTGGCGTCCCTGATCATCCCCACTTGAGCAGGAGGAGGAGAAATAAGCGATATGCCCTAACTGGACAGAAGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CATGTGACCCTAAGTTCTGAGTCTCAGAGGAGACCTGGCGGGTGGAACAGGTTTTGCGGTAGCTTGAAGTaGTGTGTCTCCATGTATTGG +
Preference number: 5 (lower is better)
Translates to: HVTLSSESQRRPGGWNRFCGSLK*CVSMYW
Trigger: CCAATACATGGAGACACACAACTTCAAGCTACCGCA...AAACCTGTTCCACCCGCCAGGTCTCCTCTGAGACTCAGAACTTAGGGTCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS-3UTR CAA 90 bp CAGGAAGATGGACCCAGAGACCTGGGCTGCCAGGGTCAAGATAGGAGCACAAACTTGAAAACCCAGTACTaGTCTCCTTTGAAGAAGACG +
Preference number: 5 (lower is better)
Translates to: QEDGPRDLGCQGQDRSTNLKTQY*SPLKKT
Trigger: CGTCTTCTTCAAAGGAGACAAGTACTGGGTTTTCAA...GTTTGTGCTCCTATCTTGACCCTGGCAGCCCAGGTCTCTGGGTCCATCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS TCA 90 bp GTTAGGGCATATCGCTTATTTCTCCTCCTCCTGCTCAAGTGGGGATaGTCAGGGACGCCACATCGAGGTTTCTTCATCCACTCGATTGTT +
Preference number: 5 (lower is better)
Translates to: VRAYRLFLLLLLKWG*SGTPHRGFFIHSIV
Trigger: AACAATCGAGTGGATGAAGAAACCTCGATGTGGCGTCCCTGATCATCCCCACTTGAGCAGGAGGAGGAGAAATAAGCGATATGCCCTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 72 bp GGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTTGGGTaGCGCTCGTGCTTCCTCTCAGATGGCGAGTGGATC +
Preference number: 6 (lower is better)
Translates to: GRSPRGGRGGLG*RSCFLSDGEWI
Trigger: GATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp GGATGGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTTaGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGTG +
Preference number: 6 (lower is better)
Translates to: GWPVPKRRPWGP*VPLVLPLRWRV
Trigger: CACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CAA 90 bp CACCTGGAGTGGATGGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTaGGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGTGGATCCTGC +
Preference number: 6 (lower is better)
Translates to: HLEWMAGPQEAAVGA*GAARASSQMASGSC
Trigger: GCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCACTCCAGGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 72 bp CCAAGAGGCGGCCGTGGGGGCCTTGGGTGCCGCTCGTaGTTCCTCTCAGATGGCGAGTGGATCCTGCGGACC +
Preference number: 6 (lower is better)
Translates to: PRGGRGGLGCRS*FLSDGEWILRT
Trigger: GGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp ACCTGGAGTGGATGGCCGGTCCCCAAGAGGCGGCCGTaGGGGCCTTGGGTGCCGCTCGTGCTTCCTCTCAGA +
Preference number: 6 (lower is better)
Translates to: TWSGWPVPKRRP*GPWVPLVLPLR
Trigger: TCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCACTCCAGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CAA 72 bp TGGATGGCCGGTCCCCAAGAGGCGGCCGTGGGGGCCTaGGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGT +
Preference number: 6 (lower is better)
Translates to: WMAGPQEAAVGA*GAARASSQMAS
Trigger: ACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp TGGGGGCCTTGGGTGCCGCTCGTGCTTCCTCTCAGATaGCGAGTGGATCCTGCGGACCGGGAGTGTAGGGAG +
Preference number: 6 (lower is better)
Translates to: WGPWVPLVLPLR*RVDPADRECRE
Trigger: CTCCCTACACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAGGCCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp CTTGGGTGCCGCTCGTGCTTCCTCTCAGATGGCGAGTaGATCCTGCGGACCGGGAGTGTAGGGAGGGGCCTT +
Preference number: 6 (lower is better)
Translates to: LGCRSCFLSDGE*ILRTGSVGRGL
Trigger: AAGGCCCCTCCCTACACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAGGAAGCACGAGCGGCACCCAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp GGGCGGGCAGGCCCTTCCAGAACTGTTCGATCTGCATaGGGTAGCCTTCCTGCACCCGGTTATTGCGCAGGC +
Preference number: 6 (lower is better)
Translates to: GRAGPSRTVRSA*GSLPAPGYCAG
Trigger: GCCTGCGCAATAACCGGGTGCAGGAAGGCTACCCCATGCAGATCGAACAGTTCTGGAAGGGCCTGCCCGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 72 bp GGCAGCCTCCGCTCCTTACGCCGCTCTACCTCCTTCTaGTTGCAGCCCATCCAGTCACGCAGGATGTTGCGT +
Preference number: 6 (lower is better)
Translates to: GSLRSLRRSTSF*LQPIQSRRMLR
Trigger: ACGCAACATCCTGCGTGACTGGATGGGCTGCAAGCAGAAGGAGGTAGAGCGGCGTAAGGAGCGGAGGCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS TCA 72 bp CGTTCACAGAGCCTGGCACGTCATCGATGGTCACCATaGTGTCCACATCATCCTGGGGCAGCCTCCGCTCCT +
Preference number: 6 (lower is better)
Translates to: RSQSLARHRWSP*CPHHPGAASAP
Trigger: AGGAGCGGAGGCTGCCCCAGGATGATGTGGACATCATGGTGACCATCGATGACGTGCCAGGCTCTGTGAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp ACGTCATCGATGGTCACCATGATGTCCACATCATCCTaGGGCAGCCTCCGCTCCTTACGCCGCTCTACCTCC +
Preference number: 6 (lower is better)
Translates to: TSSMVTMMSTSS*GSLRSLRRSTS
Trigger: GGAGGTAGAGCGGCGTAAGGAGCGGAGGCTGCCCCAGGATGATGTGGACATCATGGTGACCATCGATGACGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS TCA 72 bp GCCGCTCCTCGCTGTAGCGCCAGTATCGTTCGCCTTTaGAGAAGTAGGTTTTGCCCACAGGTTCCCAGCGCA +
Preference number: 6 (lower is better)
Translates to: AAPRCSASIVRL*RSRFCPQVPSA
Trigger: TGCGCTGGGAACCTGTGGGCAAAACCTACTTCTTCAAAGGCGAACGATACTGGCGCTACAGCGAGGAGCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 72 bp CGAATCTCCCGTCAGCTCTTTCATAGGCTGCGTCTATaGGGGCGGGCAGGCCCTTCCAGAACTGTTCGATCT +
Preference number: 6 (lower is better)
Translates to: RISRQLFHRLRL*GRAGPSRTVRS
Trigger: AGATCGAACAGTTCTGGAAGGGCCTGCCCGCCCGCATAGACGCAGCCTATGAAAGAGCTGACGGGAGATTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp GCAGGGGACAACCACAGCCACAGCGTTCACAGAGCCTaGCACGTCATCGATGGTCACCATGATGTCCACATC +
Preference number: 6 (lower is better)
Translates to: AGDNHSHSVHRA*HVIDGHHDVHI
Trigger: GATGTGGACATCATGGTGACCATCGATGACGTGCCAGGCTCTGTGAACGCTGTGGCTGTGGTTGTCCCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CAA 72 bp GTAGGTGTAATATCCTTCCTTGCTGATGAAGGCCCCTaGCGGAGCCTGCGGGATGCCCTTCCACACGGTGAT +
Preference number: 6 (lower is better)
Translates to: VGVISFLADEGP*RSLRDALPHGD
Trigger: ATCACCGTGTGGAAGGGCATCCCGCAGGCTCCGCAAGGGGCCTTCATCAGCAAGGAAGGATATTACACCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CAA 72 bp GTAGGTGACGGGCTGAGGACCCGCCTTGTTCTTGAATaGGAAGATAGTGTAGAGCAGCACCAGGAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: VGDGLRTRLVLE*EDSVEQHQEAE
Trigger: CTCTGCCTCCTGGTGCTGCTCTACACTATCTTCCAATTCAAGAACAAGGCGGGTCCTCAGCCCGTCACCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CAA 90 bp CCGCTTATAGTAGGTGACGGGCTGAGGACCCGCCTTGTTCTTGAATaGGAAGATAGTGTAGAGCAGCACCAGGAGGCAGAGGGACAGTGT +
Preference number: 6 (lower is better)
Translates to: PLIVGDGLRTRLVLE*EDSVEQHQEAEGQC
Trigger: ACACTGTCCCTCTGCCTCCTGGTGCTGCTCTACACTATCTTCCAATTCAAGAACAAGGCGGGTCCTCAGCCCGTCACCTACTATAAGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS GCA 72 bp GTCCAGTTAGGGCATATCGCTTATTTCTCCTCCTCCTaGTCAAGTGGGGATGATCAGGGACGCCACATCGAG +
Preference number: 6 (lower is better)
Translates to: VQLGHIAYFSSS*SSGDDQGRHIE
Trigger: CTCGATGTGGCGTCCCTGATCATCCCCACTTGAGCAGGAGGAGGAGAAATAAGCGATATGCCCTAACTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp ATGATGTCTGCCTCCTTCCGGTCACTTTTGATCTCATaGTATGGCACCTCTTCAAAGGTCAGTGGAGTCACC +
Preference number: 6 (lower is better)
Translates to: MMSASFRSLLIS*YGTSSKVSGVT
Trigger: GGTGACTCCACTGACCTTTGAAGAGGTGCCATACCATGAGATCAAAAGTGACCGGAAGGAGGCAGACATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CAA 72 bp AAGCTGTGGGGGTACCCAGGTTCCACCGTCACTTCTTaGAAAACCCAGTACTTGTCTCCTTTGAAGAAGACG +
Preference number: 6 (lower is better)
Translates to: KLWGYPGSTVTS*KTQYLSPLKKT
Trigger: CGTCTTCTTCAAAGGAGACAAGTACTGGGTTTTCAAAGAAGTGACGGTGGAACCTGGGTACCCCCACAGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6
CDS CCA 72 bp ACGAATAGCCTTCCGTGTGTCCAGCTCACCCACCTTTaGGGTATAATTGTGAATGCTGTAGGTGATGTGTTT +
Preference number: 6 (lower is better)
Translates to: TNSLPCVQLTHL*GIIVNAVGDVF
Trigger: AAACACATCACCTACAGCATTCACAATTATACCCCAAAGGTGGGTGAGCTGGACACACGGAAGGCTATTCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029141.6