Pregenerated sensors for MMP23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029061

Ensembl transcript IDs: ENSMUST00000030937.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTCTTCGGGTTACCGACATGGTCAACAGTCTGGGTACCTGGGCAGTaGAGCTGCCCACATTTGGCGCATCTACATTTCCCTGAGCTGCCC	+
Preference number: 5 (lower is better) Translates to: VFGLPTWSTVWVPGQ*SCPHLAHLHFPELP Trigger: GGGCAGCTCAGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGTTGACCATGTCGGTAACCCGAAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS CCA 90 bp	TCAGCGTGTAGCGGCGTCTTCGGGTTACCGACATGGTCAACAGTCTaGGTACCTGGGCAGTGGAGCTGCCCACATTTGGCGCATCTACAT	+
Preference number: 5 (lower is better) Translates to: SACSGVFGLPTWSTV*VPGQWSCPHLAHLH Trigger: ATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGTTGACCATGTCGGTAACCCGAAGACGCCGCTACACGCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS TCA 72 bp	GTGGAGCTGCCCACATTTGGCGCATCTACATTTCCCTaGGCTGCCCTCCAGGCGGTCTCGGTCGGCGCCCCT	+
Preference number: 6 (lower is better) Translates to: VELPTFGASTFP*AALQAVSVGAP Trigger: AGGGGCGCCGACCGAGACCGCCTGGAGGGCAGCTCAGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS CCA 72 bp	CAGTCTGGGTACCTGGGCAGTGGAGCTGCCCACATTTaGCGCATCTACATTTCCCTGAGCTGCCCTCCAGGC	+
Preference number: 6 (lower is better) Translates to: QSGYLGSGAAHI*RIYISLSCPPG Trigger: GCCTGGAGGGCAGCTCAGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS CCA 72 bp	GTGTCAGCGTGTAGCGGCGTCTTCGGGTTACCGACATaGTCAACAGTCTGGGTACCTGGGCAGTGGAGCTGC	+
Preference number: 6 (lower is better) Translates to: VSACSGVFGLPT*STVWVPGQWSC Trigger: GCAGCTCCACTGCCCAGGTACCCAGACTGTTGACCATGTCGGTAACCCGAAGACGCCGCTACACGCTGACAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS CAA 72 bp	ACAGTCTGGGTACCTGGGCAGTGGAGCTGCCCACATTaGGCGCATCTACATTTCCCTGAGCTGCCCTCCAGG	+
Preference number: 6 (lower is better) Translates to: TVWVPGQWSCPH*AHLHFPELPSR Trigger: CCTGGAGGGCAGCTCAGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS GCA 72 bp	TGGGCCAGTTCACCTGTGGGACCATCAAAGCAGTGGTaGACTGCAGAGACCAAGCAGTCGGTGTGGTTGACT	+
Preference number: 6 (lower is better) Translates to: WASSPVGPSKQW*TAETKQSVWLT Trigger: AGTCAACCACACCGACTGCTTGGTCTCTGCAGTGCACCACTGCTTTGATGGTCCCACAGGTGAACTGGCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS CCA 72 bp	CTTCGGGTTACCGACATGGTCAACAGTCTGGGTACCTaGGCAGTGGAGCTGCCCACATTTGGCGCATCTACA	+
Preference number: 6 (lower is better) Translates to: LRVTDMVNSLGT*AVELPTFGAST Trigger: TGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGTTGACCATGTCGGTAACCCGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS GCA 72 bp	ACATGGTCAACAGTCTGGGTACCTGGGCAGTGGAGCTaGCCACATTTGGCGCATCTACATTTCCCTGAGCTG	+
Preference number: 6 (lower is better) Translates to: TWSTVWVPGQWS*PHLAHLHFPEL Trigger: CAGCTCAGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGTTGACCATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS GCA 72 bp	CTGGCGGACATCACAAAATCCCTTTCGTGCCCAGGATaGACACACAAAAATCCGGTCCAGGCAGCCATAGAG	+
Preference number: 6 (lower is better) Translates to: LADITKSLSCPG*THKNPVQAAIE Trigger: CTCTATGGCTGCCTGGACCGGATTTTTGTGTGTGCATCCTGGGCACGAAAGGGATTTTGTGATGTCCGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030937.2
CDS CCA 72 bp	TTACCGACATGGTCAACAGTCTGGGTACCTGGGCAGTaGAGCTGCCCACATTTGGCGCATCTACATTTCCCT	+
Preference number: 6 (lower is better) Translates to: LPTWSTVWVPGQ*SCPHLAHLHFP Trigger: AGGGAAATGTAGATGCGCCAAATGTGGGCAGCTCCACTGCCCAGGTACCCAGACTGTTGACCATGTCGGTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030937.2

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