Pregenerated sensors for MMP1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041620

Ensembl transcript IDs: ENSMUST00000047888.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCCAGGTATTTCCAGACTGTCTTCACATTTTTCTGGAGTCCATCCTaGATCACAGGGAAACTGTATGAGCTGGCAGCCCAGAGAAGCAAC	+
Preference number: 5 (lower is better) Translates to: SRYFQTVFTFFWSPS*ITGKLYELAAQRSN Trigger: GTTGCTTCTCTGGGCTGCCAGCTCATACAGTTTCCCTGTGATTCAGGATGGACTCCAGAAAAATGTGAAGACAGTCTGGAAATACCTGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS TCA 90 bp	AAACTCTGGATGTCCATGGGAAATCCTTCCAGTACATTCTGTTCCTaGACAGCCCATACTTTGCTGCCTTTGAAAAAGCGGAGTTCATCT	+
Preference number: 5 (lower is better) Translates to: KLWMSMGNPSSTFCS*TAHTLLPLKKRSSS Trigger: AGATGAACTCCGCTTTTTCAAAGGCAGCAAAGTATGGGCTGTTCAGGAACAGAATGTACTGGAAGGATTTCCCATGGACATCCAGAGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS TCA 72 bp	TTTCTGGAGTCCATCCTGAATCACAGGGAAACTGTATaGGCTGGCAGCCCAGAGAAGCAACAGCAAAGGAAG	+
Preference number: 6 (lower is better) Translates to: FLESILNHRETV*AGSPEKQQQRK Trigger: CTTCCTTTGCTGTTGCTTCTCTGGGCTGCCAGCTCATACAGTTTCCCTGTGATTCAGGATGGACTCCAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS CCA 72 bp	CCACTATTACATGGATCCAGTGTTGCATCTGTTAACTaGATGGGATTTGGGGAAGGTCCATATAAGGCCTGG	+
Preference number: 6 (lower is better) Translates to: PLLHGSSVASVN*MGFGEGPYKAW Trigger: CCAGGCCTTATATGGACCTTCCCCAAATCCCATCCAGTTAACAGATGCAACACTGGATCCATGTAATAGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS TCA 72 bp	ATGTCCATGGGAAATCCTTCCAGTACATTCTGTTCCTaGACAGCCCATACTTTGCTGCCTTTGAAAAAGCGG	+
Preference number: 6 (lower is better) Translates to: MSMGNPSSTFCS*TAHTLLPLKKR Trigger: CCGCTTTTTCAAAGGCAGCAAAGTATGGGCTGTTCAGGAACAGAATGTACTGGAAGGATTTCCCATGGACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS CCA 72 bp	AACTGGATGGGATTTGGGGAAGGTCCATATAAGGCCTaGATGCGATTAATATCATCCTGGTTTAGCACAAAG	+
Preference number: 6 (lower is better) Translates to: NWMGFGEGPYKA*MRLISSWFSTK Trigger: CTTTGTGCTAAACCAGGATGATATTAATCGCATCCAGGCCTTATATGGACCTTCCCCAAATCCCATCCAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS GCA 72 bp	AAAGCGGAGTTCATCTACCCCACTAACTTCATAAGCTaGATCAAATTTACCTGGCAGATTTGGCCAGATAAG	+
Preference number: 6 (lower is better) Translates to: KAEFIYPTNFIS*IKFTWQIWPDK Trigger: CTTATCTGGCCAAATCTGCCAGGTAAATTTGATGCAGCTTATGAAGTTAGTGGGGTAGATGAACTCCGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS CAA 72 bp	TCTTCTTCACAAACAGCAGCATCAATGTTTGTCACATaGCTAGGGAAGCCAAAGAAACTCTGGATGTCCATG	+
Preference number: 6 (lower is better) Translates to: SSSQTAASMFVT*LGKPKKLWMSM Trigger: CATGGACATCCAGAGTTTCTTTGGCTTCCCTAGCAATGTGACAAACATTGATGCTGCTGTTTGTGAAGAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047888.8
CDS CCA 72 bp	TACCCCACTAACTTCATAAGCTGCATCAAATTTACCTaGCAGATTTGGCCAGATAAGGTCTATCACATCGAT	+
Preference number: 6 (lower is better) Translates to: YPTNFISCIKFT*QIWPDKVYHID Trigger: ATCGATGTGATAGACCTTATCTGGCCAAATCTGCCAGGTAAATTTGATGCAGCTTATGAAGTTAGTGGGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047888.8