Pregenerated sensors for MMP1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043089Ensembl transcript IDs: ENSMUST00000217651.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCATTTTTACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTaGAAGGAGATGCCTAGAATCACAGTGAGAGTCTTGAAGTGTAAA | + |
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Preference number: 1 (lower is better) Translates to: AIFTLERPFLLTLLS*KEMPRITVRVLKCK Trigger: TTTACACTTCAAGACTCTCACTGTGATTCTAGGCATCTCCTTTCAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR-3UTR TCA 90 bp | CCTCTCATGTACCTGTTCCTGTTTTCAGAGCCATTTTTACTTTGGAAAGACCTTTTGACTCTCCTCTCTTaGAAGGAGATGCCTAGAATC | + |
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Preference number: 2 (lower is better) Translates to: PLMYLFLFSEPFLLWKDLLTLLS*KEMPRI Trigger: GATTCTAGGCATCTCCTTTCAAGAGAGGAGAGTCAA...AAGGTCTTTCCAAAGTAAAAATGGCTCTGAAAACAGGAACAGGTACATGAGAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR-3UTR TCA 90 bp | CCTCTCATGTACCTGTTCCTGTTTTCAGAGCCATTTTTACTTTGGAAAGACCTTTCTTCAACCATGACATaGCTTTCTTGGGTTGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: PLMYLFLFSEPFLLWKDLSSTMT*LSWVVS Trigger: ACTGACAACCCAAGAAAGTCATGTCATGGTTGAAGA...AAGGTCTTTCCAAAGTAAAAATGGCTCTGAAAACAGGAACAGGTACATGAGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR-3UTR TCA 90 bp | CCTCTCATGTACCTGTTCCTGTTTTCAGAGCCATTTTTACTTTGGAAAGACCTTAATGCCTTTCTTCAGTaGCTCTTCAACCATGACATG | + |
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Preference number: 2 (lower is better) Translates to: PLMYLFLFSEPFLLWKDLNAFLQ*LFNHDM Trigger: CATGTCATGGTTGAAGAGTCACTGAAGAAAGGCATT...AAGGTCTTTCCAAAGTAAAAATGGCTCTGAAAACAGGAACAGGTACATGAGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR TCA 72 bp | ACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTaGAAGGAGATGCCTAGAATCACAGTGAGAGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: TLERPFLLTLLS*KEMPRITVRVL Trigger: CAAGACTCTCACTGTGATTCTAGGCATCTCCTTTCAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR TCA 72 bp | TCAGAGCCATTTTTACTTTGGAAAGACCTTTTCTGTTaGCTCTCCTCTCTTGAAAGGAGATGCCTAGAATCA | + |
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Preference number: 3 (lower is better) Translates to: SEPFLLWKDLFC*LSSLERRCLES Trigger: TGATTCTAGGCATCTCCTTTCAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGAGCCATTTTTACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTGCATGACTTTCTTGGGTaGTCAGTTGTAGTACTAAAG | + |
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Preference number: 3 (lower is better) Translates to: FQSHFYFGKTFSVDSPLLHDFLG*SVVVLK Trigger: CTTTAGTACTACAACTGACAACCCAAGAAAGTCATG...CAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCTGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR-3UTR CAA 90 bp | TCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCTGTTCAGAGCCATTTTTACTTaGGAAAGACCTTTTCTGTTG | + |
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Preference number: 3 (lower is better) Translates to: SLKHQNQSSNAFPLMYLFRAIFT*ERPFLL Trigger: CAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCT...GAACAGGTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR TCA 72 bp | AAAATGCCTTTCTTCAGTGACTCTTCAACCATGACATaGCTTTCTTGGGTTGTCAGTTGTAGTACTAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: KMPFFSDSSTMT*LSWVVSCSTKV Trigger: GACTTTAGTACTACAACTGACAACCCAAGAAAGTCATGTCATGGTTGAAGAGTCACTGAAGAAAGGCATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGAGCCATTTTTACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTGATCACAGTGAGAGTCTaGAAGTGTAAAAATGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: FQSHFYFGKTFSVDSPLLITVRV*KCKNAF Trigger: AAAGGCATTTTTACACTTCAAGACTCTCACTGTGAT...CAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCTGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR TCA 90 bp | CATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATGAGATTCTCCAACGAGGATTGTTGTaGGTAATGGCATATGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: HVGIRGRRVQSPLGYEILQRGLL*VMAYGA Trigger: GGCCCCATATGCCATTACTCACAACAATCCTCGTTG...GAGAATCTCATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | GAATATCAGCATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATTGTTGTTGCACCTGTTaGCTGGATGGGATTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: EYQHVGIRGRRVQSPLGYCCCTC*LDGIWG Trigger: TCCCCAAATCCCATCCAGCCAACAGGTGCAACAACA...ATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATGCTGATATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR TCA 90 bp | CATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATGAGATTCTCGCTCAGGTTCTGGCATaGATCTATTTACCCGAATGT | + |
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Preference number: 4 (lower is better) Translates to: HVGIRGRRVQSPLGYEILAQVLA*IYLPEC Trigger: ACATTCGGGTAAATAGATTCATGCCAGAACCTGAGC...GAGAATCTCATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | CCTCTCATGTACCTGTTCCTGTTTTCAGAGCCATTTTTACTTTGGAAAGACCTTCACCTGTTGGCTGGATaGGATTTGGGGAAGGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: PLMYLFLFSEPFLLWKDLHLLAG*DLGKVH Trigger: ATGGACCTTCCCCAAATCCCATCCAGCCAACAGGTG...AAGGTCTTTCCAAAGTAAAAATGGCTCTGAAAACAGGAACAGGTACATGAGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | TCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCTGTTCGTTGCACCTGTTGGCTaGATGGGATTTGGGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SLKHQNQSSNAFPLMYLFVAPVG*MGFGEG Trigger: ACCTTCCCCAAATCCCATCCAGCCAACAGGTGCAAC...GAACAGGTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | GGATTACAGAATATCAGCATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACAACTGTGGATGTCTCTaGGGAATCCTCTCAGTACAC | + |
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Preference number: 4 (lower is better) Translates to: GLQNISMWESEVEEFRVHNCGCL*GILSVH Trigger: GTGTACTGAGAGGATTCCCCAGAGACATCCACAGTT...GTGGACTCTGAACTCTTCTACCTCTGATTCCCACATGCTGATATTCTGTAATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR TCA 90 bp | AGATTCTCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCACAGGGAAACTGTATaGGCTAGCAGCCCAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: RFSLKHQNQSSNAFPLMYHRETV*ASSPEK Trigger: CTTCTCTGGGCTGCTAGCTCATACAGTTTCCCTGTG...GTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGAGAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR TCA 90 bp | TTTCAGAGCCATTTTTACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTGTGCCGGTCTCCGTTGTaGAACACAGGGAAACTGTAT | + |
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Preference number: 4 (lower is better) Translates to: FQSHFYFGKTFSVDSPLLCRSPL*NTGKLY Trigger: ATACAGTTTCCCTGTGTTTCACAACGGAGACCGGCA...CAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCTGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR TCA 90 bp | TCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCTGTTCTGTAGAACCTGCCTTTaGAGAAAAACACCTCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SLKHQNQSSNAFPLMYLFCRTCL*RKTPLP Trigger: GGGGAGAGGTGTTTTTCTTCAAAGGCAGGTTCTACA...GAACAGGTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | CTCTTAGCTGGGCACAATAGGGATTACAGAATATCAGCATGTGGGAATCAGAGGTTCCACAACTGCTTTTaGCAAATATGGTGTGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: LLAGHNRDYRISACGNQRFHNCF*QIWCVV Trigger: AACTACACACCATATTTGCCAAAAGCAGTTGTGGAA...CCTCTGATTCCCACATGCTGATATTCTGTAATCCCTATTGTGCCCAGCTAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR TCA 90 bp | AGATTCTCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCAGGGTTTCAGGATCTaGATTTCCAGTCACTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: RFSLKHQNQSSNAFPLMYQGFRI*ISSHFQ Trigger: CTGAAAGTGACTGGAAATTCAGATCCTGAAACCCTG...GTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGAGAATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | TCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCTGTTCAATTTTCACTGCTGTTaGTCCACGTCTCATCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SLKHQNQSSNAFPLMYLFNFHCC*STSHQG Trigger: ACCTTGATGAGACGTGGACCAACAGCAGTGAAAATT...GAACAGGTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR GCA 90 bp | TTTCAGAGCCATTTTTACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTGGGCATCTTCCACAACTaGTTTTGGCAAATATGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FQSHFYFGKTFSVDSPLLGIFHN*FWQIWC Trigger: ACACCATATTTGCCAAAAGCAGTTGTGGAAGATGCC...CAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCTGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | TCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACCTGTTCGGTCCATATAAGTCCTaGATGCGATTAATATCATCC | + |
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Preference number: 4 (lower is better) Translates to: SLKHQNQSSNAFPLMYLFGPYKS*MRLISS Trigger: GGATGATATTAATCGCATCCAGGACTTATATGGACC...GAACAGGTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | CCTCTCATGTACCTGTTCCTGTTTTCAGAGCCATTTTTACTTTGGAAAGACCTTTACCTCCAGTACATGTaGTCAACAAAGAAGTATGTT | + |
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Preference number: 4 (lower is better) Translates to: PLMYLFLFSEPFLLWKDLYLQYM*STKKYV Trigger: AACATACTTCTTTGTTGACCACATGTACTGGAGGTA...AAGGTCTTTCCAAAGTAAAAATGGCTCTGAAAACAGGAACAGGTACATGAGAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CCA 90 bp | CCTCTCATGTACCTGTTCCTGTTTTCAGAGCCATTTTTACTTTGGAAAGACCTTCGATTAATATCATCCTaGTTTAGCACAAAGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: PLMYLFLFSEPFLLWKDLRLISS*FSTKSS Trigger: TGAAGACTTTGTGCTAAACCAGGATGATATTAATCG...AAGGTCTTTCCAAAGTAAAAATGGCTCTGAAAACAGGAACAGGTACATGAGAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CCA 90 bp | GCCTGGCTGGAAAGTGTGAGCAAGCTTATAGTTAGGTCCATCAAATaGGTTGTTGTCACCATGGTCTCCTCTGTGGAAGGAGAGCACAAT | + |
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Preference number: 5 (lower is better) Translates to: AWLESVSKLIVRSIK*VVVTMVSSVEGEHN Trigger: ATTGTGCTCTCCTTCCACAGAGGAGACCATGGTGACAACAACCCATTTGATGGACCTAACTATAAGCTTGCTCACACTTTCCAGCCAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | GAATATCAGCATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATCCATCAAATGGGTTGTaGTCACCATGGTCTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: EYQHVGIRGRRVQSPLGYPSNGL*SPWSPL Trigger: CAGAGGAGACCATGGTGACAACAACCCATTTGATGG...ATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATGCTGATATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | CATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATGAGATTCTCCAGTACACTCTGCTCTaGAACAGCCCATACTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: HVGIRGRRVQSPLGYEILQYTLL*NSPYFA Trigger: AGCAAAGTATGGGCTGTTCAAGAGCAGAGTGTACTG...GAGAATCTCATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CCA 90 bp | GCACCTGTTGGCTGGATGGGATTTGGGGAAGGTCCATATAAGTCCTaGATGCGATTAATATCATCCTGGTTTAGCACAAAGTCTTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: APVGWMGFGEGPYKS*MRLISSWFSTKSSV Trigger: CACTGAAGACTTTGTGCTAAACCAGGATGATATTAATCGCATCCAGGACTTATATGGACCTTCCCCAAATCCCATCCAGCCAACAGGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | CATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATGAGATTCTCAAATTTTCACTGCTGTaGGTCCACGTCTCATCAAGG | + |
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Preference number: 5 (lower is better) Translates to: HVGIRGRRVQSPLGYEILKFSLL*VHVSSR Trigger: CCTTGATGAGACGTGGACCAACAGCAGTGAAAATTT...GAGAATCTCATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | CTCTTAGCTGGGCACAATAGGGATTACAGAATATCAGCATGTGGGAATCAGAGGTTGGCTGGATGGGATTaGGGGAAGGTCCATATAAGT | + |
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Preference number: 5 (lower is better) Translates to: LLAGHNRDYRISACGNQRLAGWD*GKVHIS Trigger: ACTTATATGGACCTTCCCCAAATCCCATCCAGCCAA...CCTCTGATTCCCACATGCTGATATTCTGTAATCCCTATTGTGCCCAGCTAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | GAATATCAGCATGTGGGAATCAGAGGTAGAAGAGTTCAGAGTCCACTGGGCTATCTTCCACAACTGCTTTaGGCAAATATGGTGTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: EYQHVGIRGRRVQSPLGYLPQLL*ANMVCS Trigger: ACTACACACCATATTTGCCAAAAGCAGTTGTGGAAG...ATAGCCCAGTGGACTCTGAACTCTTCTACCTCTGATTCCCACATGCTGATATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | TTTCAGAGCCATTTTTACTTTGGAAAGACCTTTTCTGTTGACTCTCCTCTCTTGTCAATGTGTGTCACATaGCTAGGGAAGCCAAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: FQSHFYFGKTFSVDSPLLSMCVT*LGKPKK Trigger: TTTCTTTGGCTTCCCTAGCAATGTGACACACATTGA...CAAGAGAGGAGAGTCAACAGAAAAGGTCTTTCCAAAGTAAAAATGGCTCTGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS-3UTR CAA 90 bp | AGATTCTCTCTTAAACACCAAAACCAAAGCAGCAATGCATTTCCTCTCATGTACATTCACGTTTTTAGCTaGCATGTTTTTGCCCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: RFSLKHQNQSSNAFPLMYIHVFS*HVFAQV Trigger: AACTTGGGCAAAAACATGCAAGCTAAAAACGTGAAT...GTACATGAGAGGAAATGCATTGCTGCTTTGGTTTTGGTGTTTAAGAGAGAATCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS TCA 72 bp | TTGCCGGTCTCCGTTGTGAAACACAGGGAAACTGTATaGGCTAGCAGCCCAGAGAAGCAACAGCAAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: LPVSVVKHRETV*ASSPEKQQQRK Trigger: CTTCCTTTGCTGTTGCTTCTCTGGGCTGCTAGCTCATACAGTTTCCCTGTGTTTCACAACGGAGACCGGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CCA 72 bp | ATCGCCTTCCTCCTCAAAGACTCTTTGGAACGTAAGTaGTGTCACATCACTCCAGACTCTAAAGGCTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: IAFLLKDSLERK*CHITPDSKGSR Trigger: GCGAGAGCCTTTAGAGTCTGGAGTGATGTGACACCACTTACGTTCCAAAGAGTCTTTGAGGAGGAAGGCGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CCA 72 bp | CCATCAAATGGGTTGTTGTCACCATGGTCTCCTCTGTaGAAGGAGAGCACAATATCGCCTTCCTCCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: PSNGLLSPWSPL*KESTISPSSSK Trigger: CTTTGAGGAGGAAGGCGATATTGTGCTCTCCTTCCACAGAGGAGACCATGGTGACAACAACCCATTTGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CAA 72 bp | CAAAGGTTAGATCACCATTACATGGATGTGGTGTTGTaGCACCTGTTGGCTGGATGGGATTTGGGGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: QRLDHHYMDVVL*HLLAGWDLGKV Trigger: GACCTTCCCCAAATCCCATCCAGCCAACAGGTGCAACAACACCACATCCATGTAATGGTGATCTAACCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CAA 72 bp | GATGTCTCTGGGGAATCCTCTCAGTACACTCTGCTCTaGAACAGCCCATACTTTGCTGCCTTTGAAATAGCG | + |
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Preference number: 6 (lower is better) Translates to: DVSGESSQYTLL*NSPYFAAFEIA Trigger: CGCTATTTCAAAGGCAGCAAAGTATGGGCTGTTCAAGAGCAGAGTGTACTGAGAGGATTCCCCAGAGACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CAA 90 bp | GAAACTGTGGATGTCTCTGGGGAATCCTCTCAGTACACTCTGCTCTaGAACAGCCCATACTTTGCTGCCTTTGAAATAGCGGACTTGATC | + |
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Preference number: 6 (lower is better) Translates to: ETVDVSGESSQYTLL*NSPYFAAFEIADLI Trigger: GATCAAGTCCGCTATTTCAAAGGCAGCAAAGTATGGGCTGTTCAAGAGCAGAGTGTACTGAGAGGATTCCCCAGAGACATCCACAGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CAA 72 bp | GATCACCATTACATGGATGTGGTGTTGTTGCACCTGTaGGCTGGATGGGATTTGGGGAAGGTCCATATAAGT | + |
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Preference number: 6 (lower is better) Translates to: DHHYMDVVLLHL*AGWDLGKVHIS Trigger: ACTTATATGGACCTTCCCCAAATCCCATCCAGCCAACAGGTGCAACAACACCACATCCATGTAATGGTGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CAA 72 bp | CATCAAAGGTTAGATCACCATTACATGGATGTGGTGTaGTTGCACCTGTTGGCTGGATGGGATTTGGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: HQRLDHHYMDVV*LHLLAGWDLGK Trigger: CTTCCCCAAATCCCATCCAGCCAACAGGTGCAACAACACCACATCCATGTAATGGTGATCTAACCTTTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CCA 72 bp | GAAAGTGTGAGCAAGCTTATAGTTAGGTCCATCAAATaGGTTGTTGTCACCATGGTCTCCTCTGTGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: ESVSKLIVRSIK*VVVTMVSSVEG Trigger: TCCTTCCACAGAGGAGACCATGGTGACAACAACCCATTTGATGGACCTAACTATAAGCTTGCTCACACTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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| CDS CAA 72 bp | TTAACTGGAAGATTTGGCCAGAGAATACCTATTAAATaGAGCTCAGGTTCTGGCATGAATCTATTTACCCGA | + |
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Preference number: 6 (lower is better) Translates to: LTGRFGQRIPIK*SSGSGMNLFTR Trigger: TCGGGTAAATAGATTCATGCCAGAACCTGAGCTCAATTTAATAGGTATTCTCTGGCCAAATCTTCCAGTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217651.3 |
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