Pregenerated sensors for MMP13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050578Ensembl transcript IDs: ENSMUST00000015394.10
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCACGCATAGTCATATAGATACTGTATGCTCAAAGATAACTTACTaGAGCTCGTTCACAGAACTAAGCTCTCCCCTGATATCTCCACCC | + |
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Preference number: 1 (lower is better) Translates to: ATHSHIDTVCSKITY*SSFTELSSPLISPP Trigger: GGGTGGAGATATCAGGGGAGAGCTTAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGAGCATACAGTATCTATATGACTATGCGTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR CCA 90 bp | TTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTaGGGTTCTCAATTGCATTACTTTAAAATTCTTCCATGTGGTTCC | + |
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Preference number: 1 (lower is better) Translates to: LSILFLHSTQESGDP*GSQLHYFKILPCGS Trigger: GGAACCACATGGAAGAATTTTAAAGTAATGCAATTGAGAACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR CAA 90 bp | GTCTCAAAAGGGCGACTGACCAGCTGGCACAGTCTTTATTCTGGCTaGCTGTGTCTTAGCTGGATCTACTTCTACATAATATTTCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: VSKGRLTSWHSLYSG*LCLSWIYFYIIFLP Trigger: AGGCAGAAATATTATGTAGAAGTAGATCCAGCTAAGACACAGCAAGCCAGAATAAAGACTGTGCCAGCTGGTCAGTCGCCCTTTTGAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR-3UTR CCA 90 bp | AATCTGAACGCTCGCAGTGAAAAGCTGAAATCTCTCTTTGGAAAGTTGTCCGTTGCTCTCAAAAGCAGATaGACCCCATGTTTGCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: NLNARSEKLKSLFGKLSVALKSR*TPCLLW Trigger: CCACAGCAAACATGGGGTCCATCTGCTTTTGAGAGC...AACGGACAACTTTCCAAAGAGAGATTTCAGCTTTTCACTGCGAGCGTTCAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR-3UTR TCA 90 bp | AATCTGAACGCTCGCAGTGAAAAGCTGAAATCTCTCTTTGGAAAGTTGTCCGTTGTGGCTCCCCATACATaGACTCCTCACAATTTTCAA | + |
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Preference number: 2 (lower is better) Translates to: NLNARSEKLKSLFGKLSVVAPHT*TPHNFQ Trigger: TTGAAAATTGTGAGGAGTTCATGTATGGGGAGCCAC...AACGGACAACTTTCCAAAGAGAGATTTCAGCTTTTCACTGCGAGCGTTCAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR-3UTR TCA 90 bp | TACTGTATGCTCAAAGATAACTTACTGAAGCTCGTTCACAGAACTAAGCTCTCCCCCACCCCATACATCTaGAAGTATTCCAAATACTCT | + |
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Preference number: 2 (lower is better) Translates to: YCMLKDNLLKLVHRTKLSPTPYI*KYSKYS Trigger: AGAGTATTTGGAATACTTTCAGATGTATGGGGTGGG...GGAGAGCTTAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGAGCATACAGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR-3UTR CCA 90 bp | TCTGTGCTCATCTGTGGCTCCCCATACATGAACTCCTCACAATTTTCAAGTTTCACCCCATGTTTGCTGTaGGTTATTATCAATCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: SVLICGSPYMNSSQFSSFTPCLL*VIINLV Trigger: AACAAGATTGATAATAACCCACAGCAAACATGGGGT...GAAACTTGAAAATTGTGAGGAGTTCATGTATGGGGAGCCACAGATGAGCACAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGATGGACCCCATGTTTGCTGTGGGTTATTATCAATCTTGTTTCTTCATATCAAAGATAACTTACTaGAGCTCGTTCACAGAACTA | + |
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Preference number: 2 (lower is better) Translates to: KQMDPMFAVGYYQSCFFISKITY*SSFTEL Trigger: TAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGA...TATGAAGAAACAAGATTGATAATAACCCACAGCAAACATGGGGTCCATCTGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR TCA 72 bp | TGGTGGAGCACAAAGGAGTGGTCTCAAAAGGGCGACTaGCCAGCTGGCACAGTCTTTATTCTGGCTTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: WWSTKEWSQKGD*PAGTVFILACC Trigger: ACAGCAAGCCAGAATAAAGACTGTGCCAGCTGGTCAGTCGCCCTTTTGAGACCACTCCTTTGTGCTCCACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR-3UTR CAA 90 bp | TGTATAAAAGTGGATGTAAATCTGAACGCTCGCAGTGAAAAGCTGAAATCTCTCAGATGGACCCCATGTTaGCTGTGGGTTATTATCAAT | + |
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Preference number: 3 (lower is better) Translates to: CIKVDVNLNARSEKLKSLRWTPC*LWVIIN Trigger: ATTGATAATAACCCACAGCAAACATGGGGTCCATCT...GAGAGATTTCAGCTTTTCACTGCGAGCGTTCAGATTTACATCCACTTTTATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR TCA 72 bp | AGTCATATAGATACTGTATGCTCAAAGATAACTTACTaGAGCTCGTTCACAGAACTAAGCTCTCCCCTGATA | + |
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Preference number: 3 (lower is better) Translates to: SHIDTVCSKITY*SSFTELSSPLI Trigger: TATCAGGGGAGAGCTTAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGAGCATACAGTATCTATATGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR TCA 72 bp | TCCCTTTATCTGTGCTCATCTGTGGCTCCCCATACATaGACTCCTCACAATTTTCAAGTTTCTAAGTTTATA | + |
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Preference number: 3 (lower is better) Translates to: SLYLCSSVAPHT*TPHNFQVSKFI Trigger: TATAAACTTAGAAACTTGAAAATTGTGAGGAGTTCATGTATGGGGAGCCACAGATGAGCACAGATAAAGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR TCA 90 bp | TCTGTGCTCATCTGTGGCTCCCCATACATGAACTCCTCACAATTTTCAAGTTTCCCTGGGTCCTTGGAGTaGTCCAGACCTAGGGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SVLICGSPYMNSSQFSSFPGSLE*SRPREW Trigger: CCACTCCCTAGGTCTGGATCACTCCAAGGACCCAGG...GAAACTTGAAAATTGTGAGGAGTTCATGTATGGGGAGCCACAGATGAGCACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR TCA 90 bp | TACTGTATGCTCAAAGATAACTTACTGAAGCTCGTTCACAGAACTAAGCTCTCCTCAGCCTCAACCTGCTaGGGGTGCAGGCGCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: YCMLKDNLLKLVHRTKLSSASTC*GCRRQK Trigger: CTTCTGGCGCCTGCACCCTCAGCAGGTTGAGGCTGA...GGAGAGCTTAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGAGCATACAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | AAGCACCAAGTGTTACTCGCTAAGGAAAGCAGAGAGGGATTAACAAACATGGTGAAACATCAGGGCTCCTaGGTCCTTGGAGTGATCCAG | + |
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Preference number: 4 (lower is better) Translates to: KHQVLLAKESREGLTNMVKHQGS*VLGVIQ Trigger: CTGGATCACTCCAAGGACCCAGGAGCCCTGATGTTT...CACCATGTTTGTTAATCCCTCTCTGCTTTCCTTAGCGAGTAACACTTGGTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | CATGTTTGCTGTGGGTTATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGGCTCCTGGGTCCTTaGAGTGATCCAGACCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: HVCCGLLSILFLHSTQESGLLGP*SDPDLG Trigger: CCCTAGGTCTGGATCACTCCAAGGACCCAGGAGCCC...TGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATAACCCACAGCAAACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR CAA 72 bp | GGGCGACTGACCAGCTGGCACAGTCTTTATTCTGGCTaGCTGTGTCTTAGCTGGATCTACTTCTACATAATA | + |
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Preference number: 4 (lower is better) Translates to: GRLTSWHSLYSG*LCLSWIYFYII Trigger: TATTATGTAGAAGTAGATCCAGCTAAGACACAGCAAGCCAGAATAAAGACTGTGCCAGCTGGTCAGTCGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | CATGCTCTCAAAAGCAGATGGACCCCATGTTTGCTGTGGGTTATTATCAATCTTATCCCCACCATAGTTTaGTCCAGGAGGAAAAGCGTG | + |
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Preference number: 4 (lower is better) Translates to: HALKSRWTPCLLWVIINLIPTIV*SRRKSV Trigger: CACGCTTTTCCTCCTGGACCAAACTATGGTGGGGAT...AAGATTGATAATAACCCACAGCAAACATGGGGTCCATCTGCTTTTGAGAGCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | AAGCACCAAGTGTTACTCGCTAAGGAAAGCAGAGAGGGATTAACAAACATGGTGCAGTGTAGGTATAGATaGGAAACATCAGGGCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: KHQVLLAKESREGLTNMVQCRYR*ETSGLL Trigger: CAGGAGCCCTGATGTTTCCCATCTATACCTACACTG...CACCATGTTTGTTAATCCCTCTCTGCTTTCCTTAGCGAGTAACACTTGGTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | TTTCCCTTTATCTGTGCTCATCTGTGGCTCCCCATACATGAACTCCTCACAATTTATGCAGCATCCACATaGTTGGGAAGTTCTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: FPFICAHLWLPIHELLTIYAAST*LGSSGQ Trigger: TTGGCCAGAACTTCCCAACCATGTGGATGCTGCATA...AATTGTGAGGAGTTCATGTATGGGGAGCCACAGATGAGCACAGATAAAGGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | AAGCACCAAGTGTTACTCGCTAAGGAAAGCAGAGAGGGATTAACAAACATGGTGTCTGGTGAAATTCAGTaGTGTCACATCAGACCAGAC | + |
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Preference number: 4 (lower is better) Translates to: KHQVLLAKESREGLTNMVSGEIQ*CHIRPD Trigger: GTCTGGTCTGATGTGACACCACTGAATTTCACCAGA...CACCATGTTTGTTAATCCCTCTCTGCTTTCCTTAGCGAGTAACACTTGGTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR TCA 90 bp | AAGCACCAAGTGTTACTCGCTAAGGAAAGCAGAGAGGGATTAACAAACATGGTGTGGAATTTGTTGGCATaGCTCTCACAATGCGATTAC | + |
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Preference number: 4 (lower is better) Translates to: KHQVLLAKESREGLTNMVWNLLA*LSQCDY Trigger: GTAATCGCATTGTGAGAGTCATGCCAACAAATTCCA...CACCATGTTTGTTAATCCCTCTCTGCTTTCCTTAGCGAGTAACACTTGGTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | AAGCACCAAGTGTTACTCGCTAAGGAAAGCAGAGAGGGATTAACAAACATGGTGACAAGTTGTAGCCTTTaGAACTGCTTGTCCAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: KHQVLLAKESREGLTNMVTSCSL*NCLSRF Trigger: AAACCTGGACAAGCAGTTCCAAAGGCTACAACTTGT...CACCATGTTTGTTAATCCCTCTCTGCTTTCCTTAGCGAGTAACACTTGGTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| 3UTR CAA 72 bp | GATGGACCCCATGTTTGCTGTGGGTTATTATCAATCTaGTTTCTTCATAGCACGCAAGAATCAGGTGATCCT | + |
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Preference number: 4 (lower is better) Translates to: DGPHVCCGLLSI*FLHSTQESGDP Trigger: AGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATAACCCACAGCAAACATGGGGTCCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR GCA 90 bp | AATCTGAACGCTCGCAGTGAAAAGCTGAAATCTCTCTTTGGAAAGTTGTCCGTTAAGCCAAAGAAAGATTaGATTTCTCGGAGCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: NLNARSEKLKSLFGKLSVKPKKD*ISRSLS Trigger: TGACAGGCTCCGAGAAATGCAATCTTTCTTTGGCTT...AACGGACAACTTTCCAAAGAGAGATTTCAGCTTTTCACTGCGAGCGTTCAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | TTATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTGAGTGGCCAAGCTCATaGGCAGCAACAATAAACAAG | + |
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Preference number: 4 (lower is better) Translates to: LLSILFLHSTQESGDPWGEWPSS*AATINK Trigger: CTTGTTTATTGTTGCTGCCCATGAGCTTGGCCACTC...ACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR TCA 90 bp | TATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTTCATCATCAGGAAGCATaGAATGGCTTTTGCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: YYQSCFFIARKNQVILGVHHQEA*NGFCQC Trigger: ACACTGGCAAAAGCCATTTCATGCTTCCTGATGATG...AACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CCA 90 bp | TTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTTCTCAATTGCATCAATATGGAATTTGTTaGCATGACTCTCACAATGCG | + |
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Preference number: 4 (lower is better) Translates to: LFLHSTQESGDPWGSQLHQYGIC*HDSHNA Trigger: CGCATTGTGAGAGTCATGCCAACAAATTCCATATTG...ATGCAATTGAGAACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR TCA 90 bp | TACTGTATGCTCAAAGATAACTTACTGAAGCTCGTTCACAGAACTAAGCTCTCCCATCATAGATTCTGGTaGAATTCAGTGGTGTCACAT | + |
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Preference number: 4 (lower is better) Translates to: YCMLKDNLLKLVHRTKLSHHRFW*NSVVSH Trigger: ATGTGACACCACTGAATTTCACCAGAATCTATGATG...GGAGAGCTTAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGAGCATACAGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR GCA 90 bp | TATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTTTTTCAAGTAGTGCTCTaGAAACACAAGGTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: YYQSCFFIARKNQVILGVFQVVL*KHKVFL Trigger: GAGGAAGACCTTGTGTTTGCAGAGCACTACTTGAAA...AACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR GCA 90 bp | ACTTTAAAATTCTTCCATGTGGTTCCAGCCACGCATAGTCATATAGATACTGTATGGGATCATCAAGTTTaGCAGTCACCTCTAAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TLKFFHVVPATHSHIDTVWDHQV*QSPLSQ Trigger: TTGGCTTAGAGGTGACTGGCAAACTTGATGATCCCA...TACAGTATCTATATGACTATGCGTGGCTGGAACCACATGGAAGAATTTTAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR TCA 90 bp | TATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTTACTGTATGGGCCCATTaGAAAAGTAGATATAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: YYQSCFFIARKNQVILGVTVWAH*KSRYSH Trigger: ATGGCTATATCTACTTTTTCAATGGGCCCATACAGT...AACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR GCA 90 bp | CATGTTTGCTGTGGGTTATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCATGTAGCCTTTGGAACTaGTTGTCCAGGTTTCATCAT | + |
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Preference number: 4 (lower is better) Translates to: HVCCGLLSILFLHSTQESCSLWN*LSRFHH Trigger: ATGATGAAACCTGGACAAGCAGTTCCAAAGGCTACA...TGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATAACCCACAGCAAACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | GGTCTCAAAAGGGCGACTGACCAGCTGGCACAGTCTTTATTCTGGCTTGCTGTGTTCGTTTGGGACCATTaGAGTGTTCTAGGGAAAACA | + |
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Preference number: 5 (lower is better) Translates to: GLKRATDQLAQSLFWLAVFVWDH*SVLGKT Trigger: TGTTTTCCCTAGAACACTCAAATGGTCCCAAACGAA...CACAGCAAGCCAGAATAAAGACTGTGCCAGCTGGTCAGTCGCCCTTTTGAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | TTTCCCTTTATCTGTGCTCATCTGTGGCTCCCCATACATGAACTCCTCACAATTTTGGGATGCTTAGGGTaGGGGTCTTCATCGCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: FPFICAHLWLPIHELLTILGCLG*GSSSPG Trigger: TCCAGGCGATGAAGACCCCAACCCTAAGCATCCCAA...AATTGTGAGGAGTTCATGTATGGGGAGCCACAGATGAGCACAGATAAAGGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS GCA 90 bp | GTGGGATCATCAAGTTTGCCAGTCACCTCTAAGCCAAAGAAAGATTaGATTTCTCGGAGCCTGTCAACTGTGGAGGTCACTGTAGACTTC | + |
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Preference number: 5 (lower is better) Translates to: VGSSSLPVTSKPKKD*ISRSLSTVEVTVDF Trigger: GAAGTCTACAGTGACCTCCACAGTTGACAGGCTCCGAGAAATGCAATCTTTCTTTGGCTTAGAGGTGACTGGCAAACTTGATGATCCCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | TTTCCCTTTATCTGTGCTCATCTGTGGCTCCCCATACATGAACTCCTCACAATTCATCCCCACCATAGTTaGGTCCAGGAGGAAAAGCGT | + |
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Preference number: 5 (lower is better) Translates to: FPFICAHLWLPIHELLTIHPHHS*VQEEKR Trigger: ACGCTTTTCCTCCTGGACCAAACTATGGTGGGGATG...AATTGTGAGGAGTTCATGTATGGGGAGCCACAGATGAGCACAGATAAAGGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | AAGCACCAAGTGTTACTCGCTAAGGAAAGCAGAGAGGGATTAACAAACATGGTGCACTTCTCTGGTGTTTaGGGATGCTTAGGGTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: KHQVLLAKESREGLTNMVHFSGV*GCLGLG Trigger: CCCCAACCCTAAGCATCCCAAAACACCAGAGAAGTG...CACCATGTTTGTTAATCCCTCTCTGCTTTCCTTAGCGAGTAACACTTGGTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 90 bp | CGTGTTCTCAAAGTGAACCGCAGCGCTCAGTCTCTTCACCTCTTTTaGGAATCCCAGGTCAGATATTTTTCTGGGATAACCTTCCAGAAT | + |
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Preference number: 5 (lower is better) Translates to: RVLKVNRSAQSLHLF*ESQVRYFSGITFQN Trigger: ATTCTGGAAGGTTATCCCAGAAAAATATCTGACCTGGGATTCCCAAAAGAGGTGAAGAGACTGAGCGCTGCGGTTCACTTTGAGAACACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 90 bp | AGCCCAGAATTTTCTCCCTCTAAAGATAAACATAAGGTCACGGGATaGATGTTCATATGCAGCATCCACATGGTTGGGAAGTTCTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: SPEFSPSKDKHKVTG*MFICSIHMVGKFWP Trigger: TGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTTTATCTTTAGAGGGAGAAAATTCTGGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS GCA 90 bp | TCTCCCTCTAAAGATAAACATAAGGTCACGGGATGGATGTTCATATaGAGCATCCACATGGTTGGGAAGTTCTGGCCAAAAGGACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: SPSKDKHKVTGWMFI*SIHMVGKFWPKGLC Trigger: ACAAAGTCCTTTTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTTTATCTTTAGAGGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | TACTGTATGCTCAAAGATAACTTACTGAAGCTCGTTCACAGAACTAAGCTCTCCACATCAGACCAGACCTaGAAGGCTTTTCTGAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: YCMLKDNLLKLVHRTKLSTSDQT*KAFLKA Trigger: GGCCTTCAGAAAAGCCTTCAAGGTCTGGTCTGATGT...GGAGAGCTTAGTTCTGTGAACGAGCTTCAGTAAGTTATCTTTGAGCATACAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | TATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTTGCAGCATCCACATGGTaGGGAAGTTCTGGCCAAAAG | + |
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Preference number: 5 (lower is better) Translates to: YYQSCFFIARKNQVILGVAASTW*GSSGQK Trigger: CTTTTGGCCAGAACTTCCCAACCATGTGGATGCTGC...AACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | TTATTATCAATCTTGTTTCTTCATAGCACGCAAGAATCAGGTGATCCTTGGGGTGTGGGATCATCAAGTTaGCCAGTCACCTCTAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LLSILFLHSTQESGDPWGVGSSS*PVTSKP Trigger: TGGCTTAGAGGTGACTGGCAAACTTGATGATCCCAC...ACCCCAAGGATCACCTGATTCTTGCGTGCTATGAAGAAACAAGATTGATAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | AATCTGAACGCTCGCAGTGAAAAGCTGAAATCTCTCTTTGGAAAGTTGTCCGTTGTTCTAGGGAAAACATaGTATTCACCCACATCAGGC | + |
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Preference number: 5 (lower is better) Translates to: NLNARSEKLKSLFGKLSVVLGKT*YSPTSG Trigger: GCCTGATGTGGGTGAATACAATGTTTTCCCTAGAAC...AACGGACAACTTTCCAAAGAGAGATTTCAGCTTTTCACTGCGAGCGTTCAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | CATGCTCTCAAAAGCAGATGGACCCCATGTTTGCTGTGGGTTATTATCAATCTTAGCCTTTGGAACTGCTaGTCCAGGTTTCATCATCAT | + |
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Preference number: 5 (lower is better) Translates to: HALKSRWTPCLLWVIINLSLWNC*SRFHHH Trigger: ATGATGATGAAACCTGGACAAGCAGTTCCAAAGGCT...AAGATTGATAATAACCCACAGCAAACATGGGGTCCATCTGCTTTTGAGAGCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS TCA 90 bp | GACCATAAAGAAACTGAATTCCTTGAACGTCATCATCAGGAAGCATaGAATGGCTTTTGCCAGTGTAGGTATAGATGGGAAACATCAGGG | + |
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Preference number: 5 (lower is better) Translates to: DHKETEFLERHHQEA*NGFCQCRYRWETSG Trigger: CCCTGATGTTTCCCATCTATACCTACACTGGCAAAAGCCATTTCATGCTTCCTGATGATGACGTTCAAGGAATTCAGTTTCTTTATGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS-3UTR CAA 90 bp | AAGCAGATGGACCCCATGTTTGCTGTGGGTTATTATCAATCTTGTTTCTTCATACTGGCCAAAAGGACTTaGTCAAAAAGAGCTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: KQMDPMFAVGYYQSCFFILAKRT*SKRAQP Trigger: AGGCTGAGCTCTTTTTGACAAAGTCCTTTTGGCCAG...TATGAAGAAACAAGATTGATAATAACCCACAGCAAACATGGGGTCCATCTGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 72 bp | AGGTATAGATGGGAAACATCAGGGCTCCTGGGTCCTTaGAGTGATCCAGACCTAGGGAGTGGCCAAGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: RYRWETSGLLGP*SDPDLGSGQAH Trigger: ATGAGCTTGGCCACTCCCTAGGTCTGGATCACTCCAAGGACCCAGGAGCCCTGATGTTTCCCATCTATACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 72 bp | TCAAGGGATAGGGCTGGGTCACACTTCTCTGGTGTTTaGGGATGCTTAGGGTTGGGGTCTTCATCGCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SRDRAGSHFSGV*GCLGLGSSSPG Trigger: TCCAGGCGATGAAGACCCCAACCCTAAGCATCCCAAAACACCAGAGAAGTGTGACCCAGCCCTATCCCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 90 bp | CATATGCAGCATCCACATGGTTGGGAAGTTCTGGCCAAAAGGACTTaGTCAAAAAGAGCTCAGCCTCAACCTGCTGAGGGTGCAGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: HMQHPHGWEVLAKRT*SKRAQPQPAEGAGA Trigger: GGCGCCTGCACCCTCAGCAGGTTGAGGCTGAGCTCTTTTTGACAAAGTCCTTTTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 72 bp | CATCCACATGGTTGGGAAGTTCTGGCCAAAAGGACTTaGTCAAAAAGAGCTCAGCCTCAACCTGCTGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: HPHGWEVLAKRT*SKRAQPQPAEG Trigger: ACCCTCAGCAGGTTGAGGCTGAGCTCTTTTTGACAAAGTCCTTTTGGCCAGAACTTCCCAACCATGTGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS TCA 72 bp | AAGGACTTTGTCAAAAAGAGCTCAGCCTCAACCTGCTaGGGGTGCAGGCGCCAGAAGAATCTGTCTTTAAAG | + |
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Preference number: 6 (lower is better) Translates to: KDFVKKSSASTC*GCRRQKNLSLK Trigger: CTTTAAAGACAGATTCTTCTGGCGCCTGCACCCTCAGCAGGTTGAGGCTGAGCTCTTTTTGACAAAGTCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 90 bp | CCGTGTTCTCAAAGTGAACCGCAGCGCTCAGTCTCTTCACCTCTTTaGGGAATCCCAGGTCAGATATTTTTCTGGGATAACCTTCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: PCSQSEPQRSVSSPL*GIPGQIFFWDNLPE Trigger: TTCTGGAAGGTTATCCCAGAAAAATATCTGACCTGGGATTCCCAAAAGAGGTGAAGAGACTGAGCGCTGCGGTTCACTTTGAGAACACGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 90 bp | AACATAAGGTCACGGGATGGATGTTCATATGCAGCATCCACATGGTaGGGAAGTTCTGGCCAAAAGGACTTTGTCAAAAAGAGCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: NIRSRDGCSYAASTW*GSSGQKDFVKKSSA Trigger: GGCTGAGCTCTTTTTGACAAAGTCCTTTTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS TCA 72 bp | CTTCAGGATTCCCGCAAGAGTCGCAGGATGGTAGTATaGTTTCAAGTAGTGCTCTGCAAACACAAGGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LQDSRKSRRMVV*FQVVLCKHKVF Trigger: GAAGACCTTGTGTTTGCAGAGCACTACTTGAAATCATACTACCATCCTGCGACTCTTGCGGGAATCCTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS GCA 72 bp | TCAAGTTTGCCAGTCACCTCTAAGCCAAAGAAAGATTaGATTTCTCGGAGCCTGTCAACTGTGGAGGTCACT | + |
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Preference number: 6 (lower is better) Translates to: SSLPVTSKPKKD*ISRSLSTVEVT Trigger: AGTGACCTCCACAGTTGACAGGCTCCGAGAAATGCAATCTTTCTTTGGCTTAGAGGTGACTGGCAAACTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 72 bp | AAAGTGAACCGCAGCGCTCAGTCTCTTCACCTCTTTTaGGAATCCCAGGTCAGATATTTTTCTGGGATAACC | + |
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Preference number: 6 (lower is better) Translates to: KVNRSAQSLHLF*ESQVRYFSGIT Trigger: GGTTATCCCAGAAAAATATCTGACCTGGGATTCCCAAAAGAGGTGAAGAGACTGAGCGCTGCGGTTCACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 72 bp | CTGGTGAAATTCAGTGGTGTCACATCAGACCAGACCTaGAAGGCTTTTCTGAAGGCCTTCTCCACTTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: LVKFSGVTSDQT*KAFLKAFSTSE Trigger: TTCTGAAGTGGAGAAGGCCTTCAGAAAAGCCTTCAAGGTCTGGTCTGATGTGACACCACTGAATTTCACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 72 bp | CAAAGTGAACCGCAGCGCTCAGTCTCTTCACCTCTTTaGGGAATCCCAGGTCAGATATTTTTCTGGGATAAC | + |
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Preference number: 6 (lower is better) Translates to: QSEPQRSVSSPL*GIPGQIFFWDN Trigger: GTTATCCCAGAAAAATATCTGACCTGGGATTCCCAAAAGAGGTGAAGAGACTGAGCGCTGCGGTTCACTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 72 bp | GTCAGCAGTGCCATCATAGATTCTGGTGAAATTCAGTaGTGTCACATCAGACCAGACCTTGAAGGCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: VSSAIIDSGEIQ*CHIRPDLEGFS Trigger: AGAAAAGCCTTCAAGGTCTGGTCTGATGTGACACCACTGAATTTCACCAGAATCTATGATGGCACTGCTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 72 bp | TGTTTTGGGATGCTTAGGGTTGGGGTCTTCATCGCCTaGACCATAAAGAAACTGAATTCCTTGAACGTCATC | + |
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Preference number: 6 (lower is better) Translates to: CFGMLRVGVFIA*TIKKLNSLNVI Trigger: GATGACGTTCAAGGAATTCAGTTTCTTTATGGTCCAGGCGATGAAGACCCCAACCCTAAGCATCCCAAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 72 bp | TCACGGGATGGATGTTCATATGCAGCATCCACATGGTaGGGAAGTTCTGGCCAAAAGGACTTTGTCAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: SRDGCSYAASTW*GSSGQKDFVKK Trigger: CTTTTTGACAAAGTCCTTTTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 90 bp | CCACATCTTGGTTTTCTCATGATGTCTAAGGTGGGATCATCAAGTTaGCCAGTCACCTCTAAGCCAAAGAAAGATTGCATTTCTCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: PHLGFLMMSKVGSSS*PVTSKPKKDCISRS Trigger: GCTCCGAGAAATGCAATCTTTCTTTGGCTTAGAGGTGACTGGCAAACTTGATGATCCCACCTTAGACATCATGAGAAAACCAAGATGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS GCA 72 bp | AAAGATAAACATAAGGTCACGGGATGGATGTTCATATaGAGCATCCACATGGTTGGGAAGTTCTGGCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: KDKHKVTGWMFI*SIHMVGKFWPK Trigger: TTTTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTTTATCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CCA 72 bp | TTTTCTCCCTCTAAAGATAAACATAAGGTCACGGGATaGATGTTCATATGCAGCATCCACATGGTTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: FSPSKDKHKVTG*MFICSIHMVGK Trigger: CTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTTTATCTTTAGAGGGAGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS TCA 72 bp | GAAACTGAATTCCTTGAACGTCATCATCAGGAAGCATaGAATGGCTTTTGCCAGTGTAGGTATAGATGGGAA | + |
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Preference number: 6 (lower is better) Translates to: ETEFLERHHQEA*NGFCQCRYRWE Trigger: TTCCCATCTATACCTACACTGGCAAAAGCCATTTCATGCTTCCTGATGATGACGTTCAAGGAATTCAGTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS CAA 72 bp | GGTTTTCTCATGATGTCTAAGGTGGGATCATCAAGTTaGCCAGTCACCTCTAAGCCAAAGAAAGATTGCATT | + |
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Preference number: 6 (lower is better) Translates to: GFLMMSKVGSSS*PVTSKPKKDCI Trigger: AATGCAATCTTTCTTTGGCTTAGAGGTGACTGGCAAACTTGATGATCCCACCTTAGACATCATGAGAAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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| CDS TCA 72 bp | TACTCCAGATACTGTATTCAAACTGTATGGGCCCATTaGAAAAGTAGATATAGCCATTTTTCTCATAGACAG | + |
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Preference number: 6 (lower is better) Translates to: YSRYCIQTVWAH*KSRYSHFSHRQ Trigger: CTGTCTATGAGAAAAATGGCTATATCTACTTTTTCAATGGGCCCATACAGTTTGAATACAGTATCTGGAGTA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015394.10 |
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