Pregenerated sensors for MMP10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047562Ensembl transcript IDs: ENSMUST00000034488.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTaGCTCATTATGAAAGACATCTGCTGCGCTCATCCGGAGCCACAG | + |
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Preference number: 1 (lower is better) Translates to: YCSEKISLLCSGDAL*LIMKDICCAHPEPQ Trigger: CTGTGGCTCCGGATGAGCGCAGCAGATGTCTTTCATAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| 3UTR-3UTR GCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATTATGAAAGACATCTaGTGCGCTCATCCGGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: GCILSPTAVRKFHFCAQVIMKDI*CAHPEP Trigger: TGGCTCCGGATGAGCGCAGCAGATGTCTTTCATAAT...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| 3UTR-3UTR TCA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAATCAGGTGATGCTTTGTaGCTCATTATGAAAGACATC | + |
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Preference number: 2 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKSGDAL*LIMKDI Trigger: GATGTCTTTCATAATGAGTCACAAAGCATCACCTGA...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| 3UTR TCA 72 bp | GAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTaGCTCATTATGAAAGACATCTGCTGCGCTCATCCG | + |
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Preference number: 3 (lower is better) Translates to: EKISLLCSGDAL*LIMKDICCAHP Trigger: CGGATGAGCGCAGCAGATGTCTTTCATAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| 3UTR TCA 72 bp | ATCATTCTGACACATAATAAAGTAGGTGGGAAGTCATaGGACTCATTTTACAGGGTTGTATATGTCTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: IILTHNKVGGKS*DSFYRVVYVLS Trigger: TGACAAGACATATACAACCCTGTAAAATGAGTCTCATGACTTCCCACCTACTTTATTATGTGTCAGAATGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GACATCTGCTGCGCTCATCCGGAGCCACAGAACATGCAGGAGCAACTAATCATTCCTGGAGAAAGTGAGTaGGGTCACCTCCTCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: DICCAHPEPQNMQEQLIIPGESE*GHLLPD Trigger: GTCTGGGAGGAGGTGACCCCACTCACTTTCTCCAGG...AATGATTAGTTGCTCCTGCATGTTCTGTGGCTCCGGATGAGCGCAGCAGATGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR TCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGAGATCCTGGAGAAAGTaGGTGGGGTCACCTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVRSWRK*VGSPPP Trigger: GGGAGGAGGTGACCCCACTCACTTTCTCCAGGATCT...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGAGATCCATGCTTGGGTaGCCTTGTGTCACTGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVRSMLG*PCVTAP Trigger: TGGGGCAGTGACACAAGGCCACCCAAGCATGGATCT...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGCAGGAACACCACACCTaGGCTTGTGCATCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVQEHHT*ACASAP Trigger: TGGAGCTGATGCACAAGCCCAGGTGTGGTGTTCCTG...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR TCA 90 bp | ACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCAACCTGGGAAGGTACTaGAGCCACCAACATCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: THGDGCILSPTAVRKFHFNLGRY*SHQHQE Trigger: TTCCTGATGTTGGTGGCTTCAGTACCTTCCCAGGTT...GAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGCAACCAGGAATAAGTTaGTCCCTGAGGGTGCAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVQPGIS*SLRVQV Trigger: CACTTGCACCCTCAGGGACCAACTTATTCCTGGTTG...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGGAGTGGCCAAGTTCATaGGCTGCAACCAGGAATAAG | + |
|
Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVEWPSS*AATRNK Trigger: CTTATTCCTGGTTGCAGCCCATGAACTTGGCCACTC...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR GCA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAATGTGTCACTGCCCCATaGAGAGGATACGCTGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKCVTAP*RGYAEQ Trigger: CTGCTCAGCGTATCCTCTGCATGGGGCAGTGACACA...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR GCA 90 bp | GACATCTGCTGCGCTCATCCGGAGCCACAGAACATGCAGGAGCAACTAATCATTTCCGTGTTCTCCAACTaGAAAGGAGATCATTATGTC | + |
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Preference number: 4 (lower is better) Translates to: DICCAHPEPQNMQEQLIISVFSN*KGDHYV Trigger: GACATAATGATCTCCTTTGCAGTTGGAGAACACGGA...AATGATTAGTTGCTCCTGCATGTTCTGTGGCTCCGGATGAGCGCAGCAGATGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGAAGGTGGAAGTTAGCTaGGCTTGTGGAGAACCTGTA | + |
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Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVKVEVS*ACGEPV Trigger: TACAGGTTCTCCACAAGCCCAGCTAACTTCCACCTT...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR TCA 90 bp | ACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCCGGACTGCCCAGAACTaGCTTCCTTTAAAAATCAGA | + |
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Preference number: 4 (lower is better) Translates to: THGDGCILSPTAVRKFHFRTAQN*LPLKIR Trigger: TCTGATTTTTAAAGGAAGTCAGTTCTGGGCAGTCCG...GAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR GCA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAACCCCTTTGGGTAGCCTaGTTGGACTTCATTTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKPLWVA*LDFISS Trigger: CGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGG...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAAAGCAAGATCCATGCTTaGGTGGCCTTGTGTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKSKIHA*VALCHC Trigger: GCAGTGACACAAGGCCACCCAAGCATGGATCTTGCT...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTAAAATCCAGGGCCAGGTaGGTAGGCATGAGCCAGACT | + |
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Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLKSRAR*VGMSQT Trigger: AGTCTGGCTCATGCCTACCCACCTGGCCCTGGATTT...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR TCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTACCCCTCTCAGCGTGCTaGCTGAATCAAAGGACAAAG | + |
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Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLPLSAC*LNQRTK Trigger: CTTTGTCCTTTGATTCAGTCAGCACGCTGAGAGGGG...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTATGGGGTCTCAGGTCTTaGAGAGACAGACAACACAGG | + |
|
Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLWGLRS*RDRQHR Trigger: CCTGTGTTGTCTGTCTCTCCAAGACCTGAGACCCCA...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | CCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCAAGGATCACATTTGTCTaGGGTCTCAGGTCTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: PTAVRKFHFCAQVMLCDSRITFV*GLRSWR Trigger: TCTCCAAGACCTGAGACCCCAGACAAATGTGATCCT...TGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTAAGTGTGGATCCCCTTTaGGTAGCCTGCTTGGACTTC | + |
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Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLSVDPL*VACLDF Trigger: GAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACT...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATCTGTTATCTGTCTTaGGAAGCCTTTATCCATAAC | + |
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Preference number: 4 (lower is better) Translates to: GCILSPTAVRKFHFCAQVICYLS*EAFIHN Trigger: GTTATGGATAAAGGCTTCCCAAGACAGATAACAGAT...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTTGTGGCTCAATTCCTaGAAAATCATCTGTTATCTG | + |
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Preference number: 4 (lower is better) Translates to: THGDGCILSPTAVRKFHFLWLNS*KIICYL Trigger: CAGATAACAGATGATTTTCCAGGAATTGAGCCACAA...GAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR GCA 90 bp | CCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCACATACAGGGATTGAATaGCCTCTATATCATCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: PTAVRKFHFCAQVMLCDSHTGIE*PLYHLE Trigger: CTCAAGATGATATAGAGGGCATTCAATCCCTGTATG...TGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAAGGAGAACCTGTAGACTaGGTACATCAGAGATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKGEPVD*VHQRFF Trigger: AAAGAATCTCTGATGTACCCAGTCTACAGGTTCTCC...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTACACAGCATCAACTTGTaGCTCAATTCCTGGAAAATC | + |
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Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLHSINL*LNSWKI Trigger: GATTTTCCAGGAATTGAGCCACAAGTTGATGCTGTG...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR TCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTAAGTGGGCCAAAATGCTaGTATCAAATGAAATTCAGG | + |
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Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLSGPKC*YQMKFR Trigger: CCTGAATTTCATTTGATATCAGCATTTTGGCCCACT...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR GCA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAACTTTTCAAAAACAGCTaGATCAATCTTCTTCACGGT | + |
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Preference number: 4 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKLFKNS*INLLHG Trigger: ACCGTGAAGAAGATTGATGCAGCTGTTTTTGAAAAG...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTAATCCACACTCTGTCTTaGCAAATCTGGTGTATAATT | + |
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Preference number: 4 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLIHTLS*QIWCII Trigger: AATTATACACCAGATTTGCCAAGACAGAGTGTGGAT...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CCA 90 bp | CTGGGGTCTCAGGTCTTGGAGAGACAGACAACACAGGAACCACTGTaGCATCGGAGGAGGGACCGGCTCCATACAGGGATTGAATGCCCT | + |
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Preference number: 5 (lower is better) Translates to: LGSQVLERQTTQEPL*HRRRDRLHTGIECP Trigger: AGGGCATTCAATCCCTGTATGGAGCCGGTCCCTCCTCCGATGCCACAGTGGTTCCTGTGTTGTCTGTCTCTCCAAGACCTGAGACCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS GCA 90 bp | CACGGTGGGAGGAAAACCGAGAGTGTGGATCCCCTTTGGGTAGCCTaGTTGGACTTCATTTCCTCGGACTGCCCAGAACTGACTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: HGGRKTESVDPLWVA*LDFISSDCPELTSF Trigger: AAAGGAAGTCAGTTCTGGGCAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACTCTCGGTTTTCCTCCCACCGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CAA 90 bp | GACATCTGCTGCGCTCATCCGGAGCCACAGAACATGCAGGAGCAACTAATCATTGCAACCAGGAATAAGTaGGTCCCTGAGGGTGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: DICCAHPEPQNMQEQLIIATRNK*VPEGAS Trigger: ACTTGCACCCTCAGGGACCAACTTATTCCTGGTTGC...AATGATTAGTTGCTCCTGCATGTTCTGTGGCTCCGGATGAGCGCAGCAGATGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CAA 90 bp | GGATGCATCCTCTCACCTACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGGTCACCGTCCTGGCATaGGGGTCAAACTCGAACTGT | + |
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Preference number: 5 (lower is better) Translates to: GCILSPTAVRKFHFCAQVVTVLA*GSNSNC Trigger: ACAGTTCGAGTTTGACCCCAATGCCAGGACGGTGAC...CACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGTAGGTGAGAGGATGCATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CAA 90 bp | ATAATAAAATACCCATGGGGATGGATGCATCCTCTCACCTACTGCAGTGAGAAACTGGGGTCTCAGGTCTaGGAGAGACAGACAACACAG | + |
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Preference number: 5 (lower is better) Translates to: IIKYPWGWMHPLTYCSEKLGSQV*ERQTTQ Trigger: CTGTGTTGTCTGTCTCTCCAAGACCTGAGACCCCAG...TTTCTCACTGCAGTAGGTGAGAGGATGCATCCATCCCCATGGGTATTTTATTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CAA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTAGATACGCTGAGCAGATaGGTAGGCTCAGCAGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLDTLSR*VGSAVP Trigger: TGGCACTGCTGAGCCTACCAATCTGCTCAGCGTATC...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS-3UTR CAA 90 bp | ACTGCAGTGAGAAAATTTCACTTCTGTGCTCAGGTGATGCTTTGTGACTCATTACACAGCAGCCAGCTGTaGCTCTTCAGTATGTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: TAVRKFHFCAQVMLCDSLHSSQL*LFSMCV Trigger: GACACACATACTGAAGAGCAACAGCTGGCTGCTGTG...TAATGAGTCACAAAGCATCACCTGAGCACAGAAGTGAAATTTTCTCACTGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | GTGTCACTGCCCCATGCAGAGGATACGCTGAGCAGATaGGTAGGCTCAGCAGTGCCAGGATGGCTAGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: VSLPHAEDTLSR*VGSAVPGWLVA Trigger: AGCCACTAGCCATCCTGGCACTGCTGAGCCTACCAATCTGCTCAGCGTATCCTCTGCATGGGGCAGTGACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CCA 72 bp | CAGGTCTTGGAGAGACAGACAACACAGGAACCACTGTaGCATCGGAGGAGGGACCGGCTCCATACAGGGATT | + |
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Preference number: 6 (lower is better) Translates to: QVLERQTTQEPL*HRRRDRLHTGI Trigger: AATCCCTGTATGGAGCCGGTCCCTCCTCCGATGCCACAGTGGTTCCTGTGTTGTCTGTCTCTCCAAGACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | TCACGGTGGGAGGAAAACCGAGAGTGTGGATCCCCTTaGGGTAGCCTGCTTGGACTTCATTTCCTCGGACTG | + |
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Preference number: 6 (lower is better) Translates to: SRWEENRECGSP*GSLLGLHFLGL Trigger: CAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACTCTCGGTTTTCCTCCCACCGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS GCA 72 bp | AGGAAAACCGAGAGTGTGGATCCCCTTTGGGTAGCCTaGTTGGACTTCATTTCCTCGGACTGCCCAGAACTG | + |
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Preference number: 6 (lower is better) Translates to: RKTESVDPLWVA*LDFISSDCPEL Trigger: CAGTTCTGGGCAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACTCTCGGTTTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 90 bp | CAATCTTCTTCACGGTGGGAGGAAAACCGAGAGTGTGGATCCCCTTaGGGTAGCCTGCTTGGACTTCATTTCCTCGGACTGCCCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: QSSSRWEENRECGSP*GSLLGLHFLGLPRT Trigger: AGTTCTGGGCAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACTCTCGGTTTTCCTCCCACCGTGAAGAAGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | AAAACCGAGAGTGTGGATCCCCTTTGGGTAGCCTGCTaGGACTTCATTTCCTCGGACTGCCCAGAACTGACT | + |
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Preference number: 6 (lower is better) Translates to: KTESVDPLWVAC*DFISSDCPELT Trigger: AGTCAGTTCTGGGCAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACTCTCGGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 90 bp | AGGAACCACTGTGGCATCGGAGGAGGGACCGGCTCCATACAGGGATaGAATGCCCTCTATATCATCTTGAGAAAGGTGGAAGTTAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: RNHCGIGGGTGSIQG*NALYIILRKVEVSW Trigger: CCAGCTAACTTCCACCTTTCTCAAGATGATATAGAGGGCATTCAATCCCTGTATGGAGCCGGTCCCTCCTCCGATGCCACAGTGGTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 90 bp | GGTGGGAGGAAAACCGAGAGTGTGGATCCCCTTTGGGTAGCCTGCTaGGACTTCATTTCCTCGGACTGCCCAGAACTGACTTCCTTTAAA | + |
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Preference number: 6 (lower is better) Translates to: GGRKTESVDPLWVAC*DFISSDCPELTSFK Trigger: TTTAAAGGAAGTCAGTTCTGGGCAGTCCGAGGAAATGAAGTCCAAGCAGGCTACCCAAAGGGGATCCACACTCTCGGTTTTCCTCCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | GAGTGGCCAAGTTCATGGGCTGCAACCAGGAATAAGTaGGTCCCTGAGGGTGCAAGTGTCCATTTCTCATCA | + |
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Preference number: 6 (lower is better) Translates to: EWPSSWAATRNK*VPEGASVHFSS Trigger: TGATGAGAAATGGACACTTGCACCCTCAGGGACCAACTTATTCCTGGTTGCAGCCCATGAACTTGGCCACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | TGTGGCATCGGAGGAGGGACCGGCTCCATACAGGGATaGAATGCCCTCTATATCATCTTGAGAAAGGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: CGIGGGTGSIQG*NALYIILRKVE Trigger: TTCCACCTTTCTCAAGATGATATAGAGGGCATTCAATCCCTGTATGGAGCCGGTCCCTCCTCCGATGCCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS GCA 72 bp | TGTAGTATTTTTCTAGGTATTGCTGAGCAAGATCCATaGTTGGGTGGCCTTGTGTCACTGCCCCATGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: CSIFLGIAEQDP*LGGLVSLPHAE Trigger: CTCTGCATGGGGCAGTGACACAAGGCCACCCAAGCATGGATCTTGCTCAGCAATACCTAGAAAAATACTACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | AGTATTTTTCTAGGTATTGCTGAGCAAGATCCATGCTaGGGTGGCCTTGTGTCACTGCCCCATGCAGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: SIFLGIAEQDPC*GGLVSLPHAED Trigger: ATCCTCTGCATGGGGCAGTGACACAAGGCCACCCAAGCATGGATCTTGCTCAGCAATACCTAGAAAAATACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CAA 72 bp | GGCTCCATACAGGGATTGAATGCCCTCTATATCATCTaGAGAAAGGTGGAAGTTAGCTGGGCTTGTGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: GSIQGLNALYII*RKVEVSWACGE Trigger: TTCTCCACAAGCCCAGCTAACTTCCACCTTTCTCAAGATGATATAGAGGGCATTCAATCCCTGTATGGAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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| CDS CCA 72 bp | GTGGAAGTTAGCTGGGCTTGTGGAGAACCTGTAGACTaGGTACATCAGAGATTCTTTCTTGTCGGAATGAAA | + |
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Preference number: 6 (lower is better) Translates to: VEVSWACGEPVD*VHQRFFLVGMK Trigger: TTTCATTCCGACAAGAAAGAATCTCTGATGTACCCAGTCTACAGGTTCTCCACAAGCCCAGCTAACTTCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034488.4 |
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