RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MME (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027820

Ensembl transcript IDs: ENSMUST00000029400.7, ENSMUST00000191633.6, ENSMUST00000192002.3, ENSMUST00000194134.6, ENSMUST00000194150.6, ENSMUST00000194324.6, ENSMUST00000194836.6

Found 266 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCTTTGGGAGAGTTTGGAAGGAGCATGAATGTTGCAAACAAAAGTaGGTGCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTG +
Preference number: 1 (lower is better)
Translates to: FFGRVWKEHECCKQK*VLRGKSVLWCPAVL
Trigger: CAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGCACTCACTTTTGTTTGCAACATTCATGCTCCTTCCAAACTCTCCCAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR TCA 90 bp CTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTaGTGGCCATTAAGGAAAATCATAAGCCAGGTCTTGGATGAATTT +
Preference number: 1 (lower is better)
Translates to: LGHIKFACPMGLSFQ*WPLRKIISQVLDEF
Trigger: AAATTCATCCAAGACCTGGCTTATGATTTTCCTTAATGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR GCA 90 bp AACAGAGGTTTTTCTAGAGCAGGACAGTTGGCTTTTCTTAACATGTaGTGGGTATGTGGTGCAGTTATAAGTCTATCCTTTACCGACCTG +
Preference number: 1 (lower is better)
Translates to: NRGFSRAGQLAFLNM*WVCGAVISLSFTDL
Trigger: CAGGTCGGTAAAGGATAGACTTATAACTGCACCACATACCCAGCACATGTTAAGAAAAGCCAACTGTCCTGCTCTAGAAAAACCTCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CCA 90 bp TTTGGTCCTTGTTTCCTGGGTAACAGGTTAAAGGGAAGGCAGCATTaGTATGAACTGCTGGAATCTTACTGTCTTCTTTTTGGAGTAAAA +
Preference number: 1 (lower is better)
Translates to: FGPCFLGNRLKGRQH*YELLESYCLLFGVK
Trigger: TTTTACTCCAAAAAGAAGACAGTAAGATTCCAGCAGTTCATACCAATGCTGCCTTCCCTTTAACCTGTTACCCAGGAAACAAGGACCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 90 bp CTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTaGACGGTAGTACTACCGTTGGAAAGTAATCATTATTTACACAGT +
Preference number: 1 (lower is better)
Translates to: LYRQHESCSLCEKQK*TVVLPLESNHYLHS
Trigger: ACTGTGTAAATAATGATTACTTTCCAACGGTAGTACTACCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR GCA 90 bp AAACTATTCAACTCTGTAGTGTTTTCTTGGGGAAACCCTTCTACATaGTTCTTTCTCCTAGAGATATTGGGAACAGTGAAGAGGAAGATG +
Preference number: 1 (lower is better)
Translates to: KLFNSVVFSWGNPST*FFLLEILGTVKRKM
Trigger: CATCTTCCTCTTCACTGTTCCCAATATCTCTAGGAGAAAGAAGCATGTAGAAGGGTTTCCCCAAGAAAACACTACAGAGTTGAATAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR GCA 90 bp CTTTCTAAACTGACAGATGCCTTCTACTCTAAGAGCTCCATCTATTaGTATAGGAATTATGAACACTTAAGAAAGTTTGCAAGTGTCTGT +
Preference number: 1 (lower is better)
Translates to: LSKLTDAFYSKSSIY*YRNYEHLRKFASVC
Trigger: ACAGACACTTGCAAACTTTCTTAAGTGTTCATAATTCCTATAGCAATAGATGGAGCTCTTAGAGTAGAAGGCATCTGTCAGTTTAGAAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 90 bp AGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGACAATaGACAGTTTATGACTGTGTTGTACTATGTCTTGAACCTTTGACT +
Preference number: 1 (lower is better)
Translates to: RLITYLLGRAFESGQ*TVYDCVVLCLEPLT
Trigger: AGTCAAAGGTTCAAGACATAGTACAACACAGTCATAAACTGTTCATTGTCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATGGGGCCCAGTTTCTCTaGGGGAAGAGTTCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: GQICALVPCCTEHRPPFDGAQFL*GKSSCF
Trigger: GAAACAGGAACTCTTCCCTCAGAGAAACTGGGCCCC...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR TCA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCGGGGCCCAGTTTCTCTaGGGGAAGAGTTCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGGAQFL*GKSSCF
Trigger: GAAACAGGAACTCTTCCCTCAGAGAAACTGGGCCCC...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATGGGGCCCAGTTTCTCTaGGGGAAGAGTTCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNGAQFL*GKSSCF
Trigger: GAAACAGGAACTCTTCCCTCAGAGAAACTGGGCCCC...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR TCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTAACAAAAGTGAGTGCTaGGGGGCAAATCTGTGCTTT +
Preference number: 2 (lower is better)
Translates to: QNCTSLKATVCMGVLWESNKSEC*GANLCF
Trigger: AAAGCACAGATTTGCCCCTCAGCACTCACTTTTGTT...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR TCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTGTTGCAAACAAAAGTaGGTGCTGAGGGGCAAATCT +
Preference number: 2 (lower is better)
Translates to: QNCTSLKATVCMGVLWESCCKQK*VLRGKS
Trigger: AGATTTGCCCCTCAGCACTCACTTTTGTTTGCAACA...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR CAA 90 bp GCAGTAGAACTAGAACAAATCCTCAACTTCCTGGGGAGCATCCTTTaGCCTTGCACACAGACACTATGTTATGGAAGCAGACTCCTTGCC +
Preference number: 2 (lower is better)
Translates to: AVELEQILNFLGSIL*PCTQTLCYGSRLLA
Trigger: GGCAAGGAGTCTGCTTCCATAACATAGTGTCTGTGTGCAAGGCAAAAGGATGCTCCCCAGGAAGTTGAGGATTTGTTCTAGTTCTACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp TGTGCCCAAGGTCACTTTGGCAGTAGAACTAGAACAAATCCTCAACTTCCTGGGAAGCTGCAGTCTGTGTaGGAAACAGAAGTGAACGGT +
Preference number: 2 (lower is better)
Translates to: CAQGHFGSRTRTNPQLPGKLQSV*ETEVNG
Trigger: ACCGTTCACTTCTGTTTCTCACACAGACTGCAGCTT...CCCAGGAAGTTGAGGATTTGTTCTAGTTCTACTGCCAAAGTGACCTTGGGCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGAAGAACATAGGGTTCTaGGTACCAGCTACAACCACT +
Preference number: 2 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLKNIGF*VPATTT
Trigger: AGTGGTTGTAGCTGGTACTCAGAACCCTATGTTCTT...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CAA 90 bp AGAACTAGAACAAATCCTCAACTTCCTGGGGAGCATCCTTTTGCCTaGCACACAGACACTATGTTATGGAAGCAGACTCCTTGCCAACAC +
Preference number: 2 (lower is better)
Translates to: RTRTNPQLPGEHPFA*HTDTMLWKQTPCQH
Trigger: GTGTTGGCAAGGAGTCTGCTTCCATAACATAGTGTCTGTGTGCAAGGCAAAAGGATGCTCCCCAGGAAGTTGAGGATTTGTTCTAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CCA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGTTCTTTGGGAGAGTTTaGAAGGAGCATGAATGTTGC +
Preference number: 2 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLFFGRV*KEHECC
Trigger: GCAACATTCATGCTCCTTCCAAACTCTCCCAAAGAA...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGAGTTCCTGTTTCCGTaGCTTTGGCAAATCTTGCCG +
Preference number: 2 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYEFLFP*LWQILP
Trigger: CGGCAAGATTTGCCAAAGCCACGGAAACAGGAACTC...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR TCA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGATAGGTTTGGAAGCTTaGTCCTTTAATGAACTACCA +
Preference number: 2 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLIGLEA*SFNELP
Trigger: TGGTAGTTCATTAAAGGATCAAGCTTCCAAACCTAT...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGATGTCACCAAGTCACCTaGGTGGTCCAGCTCTTCACA +
Preference number: 2 (lower is better)
Translates to: SLNPRLITYLLGRAFESGCHQVT*VVQLFT
Trigger: TGTGAAGAGCTGGACCACTCAGGTGACTTGGTGACA...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCAGGTCAGGAGAAATaGAGGATTAGGATGTATCAG +
Preference number: 2 (lower is better)
Translates to: LAHLHFQCYTKSPPYPPTPGQEK*RIRMYQ
Trigger: CTGATACATCCTAATCCTTCATTTCTCCTGACCTGG...GGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGTTCCTGTTTCCGTaGCTTTGGCAAATCTTGCCG +
Preference number: 2 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCEFLFP*LWQILP
Trigger: CGGCAAGATTTGCCAAAGCCACGGAAACAGGAACTC...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR TCA 90 bp TGTGCCCAAGGTCACTTTGGCAGTAGAACTAGAACAAATCCTCAACTTCCTGGGTTATGTATGGTAAAATaGGTTCAAAACTGCACGAGC +
Preference number: 2 (lower is better)
Translates to: CAQGHFGSRTRTNPQLPGLCMVK*VQNCTS
Trigger: GCTCGTGCAGTTTTGAACTCATTTTACCATACATAA...CCCAGGAAGTTGAGGATTTGTTCTAGTTCTACTGCCAAAGTGACCTTGGGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGAGCAAGTGCTAAGGTCTaGCTTGGGCAAAATGCCAGA +
Preference number: 2 (lower is better)
Translates to: SLNPRLITYLLGRAFESGASAKV*LGQNAR
Trigger: TCTGGCATTTTGCCCAAGTCAGACCTTAGCACTTGC...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATAAGCTGCAGTCTGTGTaGGAAACAGAAGTGAACGGT +
Preference number: 2 (lower is better)
Translates to: QIQLDPFLATRDRLNLENKLQSV*ETEVNG
Trigger: ACCGTTCACTTCTGTTTCTCACACAGACTGCAGCTT...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
3UTR-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCAACAAAAGTGAGTGCTaGGGGGCAAATCTGTGCTTT +
Preference number: 2 (lower is better)
Translates to: KNLNITKVGEIGEPFQILNKSEC*GANLCF
Trigger: AAAGCACAGATTTGCCCCTCAGCACTCACTTTTGTT...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR TCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGAGGCCTCTCTTTCCAGTaGTGGCCATTAAGGAAAATC +
Preference number: 2 (lower is better)
Translates to: SLNPRLITYLLGRAFESGGLSFQ*WPLRKI
Trigger: GATTTTCCTTAATGGCCATCACTGGAAAGAGAGGCC...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTTCTTTGGGAGAGTTTaGAAGGAGCATGAATGTTGC +
Preference number: 2 (lower is better)
Translates to: KNLNITKVGEIGEPFQILFFGRV*KEHECC
Trigger: GCAACATTCATGCTCCTTCCAAACTCTCCCAAAGAA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR-3UTR CCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGAACAGACACTATGTTATaGAAGCAGACTCCTTGCCAA +
Preference number: 2 (lower is better)
Translates to: SLNPRLITYLLGRAFESGTDTML*KQTPCQ
Trigger: TTGGCAAGGAGTCTGCTTCCATAACATAGTGTCTGT...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CAA 90 bp CTCTCTGGTACCACACTACTCCATGAACATTGCAGTAATACATACTaGATTCTATGTTTTGGGGGATCCACAATGTTCTTAGTATGTGAT +
Preference number: 2 (lower is better)
Translates to: LSGTTLLHEHCSNTY*ILCFGGSTMFLVCD
Trigger: ATCACATACTAAGAACATTGTGGATCCCCCAAAACATAGAATCAAGTATGTATTACTGCAATGTTCATGGAGTAGTGTGGTACCAGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CAA 90 bp TTTTCTTGGGGAAACCCTTCTACATGCTTCTTTCTCCTAGAGATATaGGGAACAGTGAAGAGGAAGATGAAATTACTCTTCTCTGTACTA +
Preference number: 2 (lower is better)
Translates to: FSWGNPSTCFFLLEI*GTVKRKMKLLFSVL
Trigger: TAGTACAGAGAAGAGTAATTTCATCTTCCTCTTCACTGTTCCCAATATCTCTAGGAGAAAGAAGCATGTAGAAGGGTTTCCCCAAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CAA 90 bp TTTGTTTTGTTGCTGTTGAGGCAATATCTCATTGGAGAACCAGTCTaGCTTAAAACACTATATGTTCCAAGTTGCCTTTCAAGTTGGTCT +
Preference number: 2 (lower is better)
Translates to: FVLLLLRQYLIGEPV*LKTLYVPSCLSSWS
Trigger: AGACCAACTTGAAAGGCAACTTGGAACATATAGTGTTTTAAGCAAGACTGGTTCTCCAATGAGATATTGCCTCAACAGCAACAAAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CAA 90 bp CTGAAGAGTTTGTTTCATACTCTGGTTTATTATAGGGGATTATATTaGATTTGTAGCCATTTCCCCCATTTCCTGCCATCTACATTCCTT +
Preference number: 2 (lower is better)
Translates to: LKSLFHTLVYYRGLY*ICSHFPHFLPSTFL
Trigger: AAGGAATGTAGATGGCAGGAAATGGGGGAAATGGCTACAAATCAAATATAATCCCCTATAATAAACCAGAGTATGAAACAAACTCTTCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR GCA 72 bp GCCCTGGCGTTCTCCTGTACTGGGGCATATAAAGTTTaGGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCC +
Preference number: 3 (lower is better)
Translates to: ALAFSCTGAYKV*VSNGPLFPVMA
Trigger: GGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGAGAACGCCAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp CAGGAAGCTGAAGAAACTTCCGGGGCCCAGTTTCTCTaGGGGAAGAGTTCCTGTTTCCGTGGCTTTGGCAAA +
Preference number: 3 (lower is better)
Translates to: QEAEETSGAQFL*GKSSCFRGFGK
Trigger: TTTGCCAAAGCCACGGAAACAGGAACTCTTCCCTCAGAGAAACTGGGCCCCGGAAGTTTCTTCAGCTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR GCA 72 bp GTGAGTGCTGAGGGGCAAATCTGTGCTTTGGTGCCCTaGTGTACTGAGCATCGTCCTCCTTTTGATCAGAAG +
Preference number: 3 (lower is better)
Translates to: VSAEGQICALVP*CTEHRPPFDQK
Trigger: CTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGCACTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR CCA 72 bp GGCCCAGTTTCTCTGAGGGAAGAGTTCCTGTTTCCGTaGCTTTGGCAAATCTTGCCGTGGATGTTCAGTATC +
Preference number: 3 (lower is better)
Translates to: GPVSLREEFLFP*LWQILPWMFSI
Trigger: GATACTGAACATCCACGGCAAGATTTGCCAAAGCCACGGAAACAGGAACTCTTCCCTCAGAGAAACTGGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR CCA 72 bp GTCACATGTGGCTCCTCTGTCACCAAGTCACCTGAGTaGTCCAGCTCTTCACATTTGCACATTTGGCTTCAG +
Preference number: 3 (lower is better)
Translates to: VTCGSSVTKSPE*SSSSHLHIWLQ
Trigger: CTGAAGCCAAATGTGCAAATGTGAAGAGCTGGACCACTCAGGTGACTTGGTGACAGAGGAGCCACATGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CCA 72 bp GAGCATCCTTTTGCCTTGCACACAGACACTATGTTATaGAAGCAGACTCCTTGCCAACACATACTGCCAGGA +
Preference number: 3 (lower is better)
Translates to: EHPFALHTDTML*KQTPCQHILPG
Trigger: TCCTGGCAGTATGTGTTGGCAAGGAGTCTGCTTCCATAACATAGTGTCTGTGTGCAAGGCAAAAGGATGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CAA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGTTCACTTCTGTCTCTTaGGCTGCTATGACAGGACAT +
Preference number: 3 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLFTSVS*AAMTGH
Trigger: ATGTCCTGTCATAGCAGCCAAAGAGACAGAAGTGAA...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CAA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGAATAAACATGCTATTTaGACAACAGTCACATGTGGC +
Preference number: 3 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLNKHAI*TTVTCG
Trigger: GCCACATGTGACTGTTGTCAAAATAGCATGTTTATT...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp AGGCACCAGAGTTGCTGTTACATAGGTTTGGAAGCTTaGTCCTTTAATGAACTACCAGTGGAGATGCTAGTG +
Preference number: 3 (lower is better)
Translates to: RHQSCCYIGLEA*SFNELPVEMLV
Trigger: CACTAGCATCTCCACTGGTAGTTCATTAAAGGATCAAGCTTCCAAACCTATGTAACAGCAACTCTGGTGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp ATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTaGTGGCCATTAAGGAAAATCATAAGCCAGGTCTTG +
Preference number: 3 (lower is better)
Translates to: IKFACPMGLSFQ*WPLRKIISQVL
Trigger: CAAGACCTGGCTTATGATTTTCCTTAATGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CAA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATCTGTATGGGAGTTCTTaGGGAGAGTTTGGAAGGAGC +
Preference number: 3 (lower is better)
Translates to: QIQLDPFLATRDRLNLENLYGSS*GEFGRS
Trigger: GCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAG...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
3UTR TCA 72 bp CGAACACCAGCCTTTCCAGACCCTTTGTTTCTGAGTTaGGAACCCATGATTATTGCTTGCAAGAAACAATAC +
Preference number: 3 (lower is better)
Translates to: RTPAFPDPLFLS*EPMIIACKKQY
Trigger: GTATTGTTTCTTGCAAGCAATAATCATGGGTTCTCAACTCAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR GCA 72 bp GAACCAGTCTTGCTTAAAACACTATATGTTCCAAGTTaGCTTTCAAGTTGGTCTGAAGCCCCCAGTAATCCT +
Preference number: 3 (lower is better)
Translates to: EPVLLKTLYVPS*LSSWSEAPSNP
Trigger: AGGATTACTGGGGGCTTCAGACCAACTTGAAAGGCAACTTGGAACATATAGTGTTTTAAGCAAGACTGGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR GCA 72 bp AACTCTGTAGTGTTTTCTTGGGGAAACCCTTCTACATaGTTCTTTCTCCTAGAGATATTGGGAACAGTGAAG +
Preference number: 3 (lower is better)
Translates to: NSVVFSWGNPST*FFLLEILGTVK
Trigger: CTTCACTGTTCCCAATATCTCTAGGAGAAAGAAGCATGTAGAAGGGTTTCCCCAAGAAAACACTACAGAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CCA 72 bp TGTTTCCTGGGTAACAGGTTAAAGGGAAGGCAGCATTaGTATGAACTGCTGGAATCTTACTGTCTTCTTTTT +
Preference number: 3 (lower is better)
Translates to: CFLGNRLKGRQH*YELLESYCLLF
Trigger: AAAAAGAAGACAGTAAGATTCCAGCAGTTCATACCAATGCTGCCTTCCCTTTAACCTGTTACCCAGGAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CCA 72 bp TCACCTGAGTGGTCCAGCTCTTCACATTTGCACATTTaGCTTCAGCATAATCCAATTATAATTGTGACTCCT +
Preference number: 3 (lower is better)
Translates to: SPEWSSSSHLHI*LQHNPIIIVTP
Trigger: AGGAGTCACAATTATAATTGGATTATGCTGAAGCCAAATGTGCAAATGTGAAGAGCTGGACCACTCAGGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CAA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGAGAGCATCCTTTTGCCTaGCACACAGACACTATGTTA +
Preference number: 3 (lower is better)
Translates to: SLNPRLITYLLGRAFESGEHPFA*HTDTML
Trigger: TAACATAGTGTCTGTGTGCAAGGCAAAAGGATGCTC...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR-3UTR CAA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGACTCTGTAGTGTTTTCTaGGGGAAACCCTTCTACATG +
Preference number: 3 (lower is better)
Translates to: SLNPRLITYLLGRAFESGLCSVF*GKPFYM
Trigger: CATGTAGAAGGGTTTCCCCAAGAAAACACTACAGAG...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp CAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTaGACGGTAGTACTACCGTTGGAAAGTAATCATTAT +
Preference number: 3 (lower is better)
Translates to: QHESCSLCEKQK*TVVLPLESNHY
Trigger: ATAATGATTACTTTCCAACGGTAGTACTACCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR GCA 72 bp TTTTCTAGAGCAGGACAGTTGGCTTTTCTTAACATGTaGTGGGTATGTGGTGCAGTTATAAGTCTATCCTTT +
Preference number: 3 (lower is better)
Translates to: FSRAGQLAFLNM*WVCGAVISLSF
Trigger: AAAGGATAGACTTATAACTGCACCACATACCCAGCACATGTTAAGAAAAGCCAACTGTCCTGCTCTAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp GTCTTGGATGAATTTGTCTTTCCAGGTCAGGAGAAATaGAGGATTAGGATGTATCAGATTAGAGATATTGTC +
Preference number: 3 (lower is better)
Translates to: VLDEFVFPGQEK*RIRMYQIRDIV
Trigger: GACAATATCTCTAATCTGATACATCCTAATCCTTCATTTCTCCTGACCTGGAAAGACAAATTCATCCAAGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp TGTTTCATACTCTGGTTTATTATAGGGGATTATATTTaGTTTGTAGCCATTTCCCCCATTTCCTGCCATCTA +
Preference number: 3 (lower is better)
Translates to: CFILWFIIGDYI*FVAISPISCHL
Trigger: TAGATGGCAGGAAATGGGGGAAATGGCTACAAATCAAATATAATCCCCTATAATAAACCAGAGTATGAAACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp ACATATCTACTAGGTAGAGCCTTTGAATCTGGACAATaGACAGTTTATGACTGTGTTGTACTATGTCTTGAA +
Preference number: 3 (lower is better)
Translates to: TYLLGRAFESGQ*TVYDCVVLCLE
Trigger: TTCAAGACATAGTACAACACAGTCATAAACTGTTCATTGTCCAGATTCAAAGGCTCTACCTAGTAGATATGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR TCA 72 bp CTTGACCAAAACCTTAATCTGTCTAAAACACCAAACTaGAGAGTTTGTTTCATACTCTGGTTTATTATAGGG +
Preference number: 3 (lower is better)
Translates to: LDQNLNLSKTPN*RVCFILWFIIG
Trigger: CCCTATAATAAACCAGAGTATGAAACAAACTCTTCAGTTTGGTGTTTTAGACAGATTAAGGTTTTGGTCAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAAGCACAGAGAGGCTaGTCTCCAGGGGAGTCCATC +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDQAQRG*SPGESI
Trigger: GATGGACTCCCCTGGAGATCAGCCTCTCTGTGCTTG...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTGCCCCCATAGTTCAATaGGTTGGATTGCTGAGCACT +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPAPIVQ*VGLLST
Trigger: AGTGCTCAGCAATCCAACTCATTGAACTATGGGGGC...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTAACTCGGCAGAGTTCTaGAAAGTCCCAATGATCCTG +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPNSAEF*KVPMIL
Trigger: CAGGATCATTGGGACTTTGCAGAACTCTGCCGAGTT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAAACTGGTCTCGGGAATaGCGTTGCGTTTCAACCAGC +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSNWSRE*RCVSTS
Trigger: GCTGGTTGAAACGCAACGTCATTCCCGAGACCAGTT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGTTATTTGCCGACTGCTaGGTCCACCAGTCAACGAGG +
Preference number: 4 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLLFADC*VHQSTR
Trigger: CCTCGTTGACTGGTGGACGCAGCAGTCGGCAAATAA...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCATTATTTGCCGACTGCTaGGTCCACCAGTCAACGAGG +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSLFADC*VHQSTR
Trigger: CCTCGTTGACTGGTGGACGCAGCAGTCGGCAAATAA...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATGAGGCATCCATATTCTaGATCAGTCGAGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDEASIF*ISRAAD
Trigger: ATCAGCTGCTCGACTGATTCAGAATATGGATGCCTC...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCACCTTGTAGTTTCGGCTaGGGCTGCTTACAAGATCCA +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSPCSFG*GCLQDP
Trigger: TGGATCTTGTAAGCAGCCTCAGCCGAAACTACAAGG...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATGAATTCTTGCGGCAATaGAAGGCATCTGCAAACTCG +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDEFLRQ*KASANS
Trigger: CGAGTTTGCAGATGCCTTTCATTGCCGCAAGAATTC...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTGCAGTCTGATGATTTaGAAATGCCATCATCATAGG +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPCSLMI*KCHHHR
Trigger: CCTATGATGATGGCATTTGCAAATCATCAGACTGCA...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTTATTTGCCGACTGCTaGGTCCACCAGTCAACGAGG +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNLFADC*VHQSTR
Trigger: CCTCGTTGACTGGTGGACGCAGCAGTCGGCAAATAA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTAATAGAATTGACTaGATACTCTGGCCGGTAGGT +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPFNRID*ILWPVG
Trigger: ACCTACCGGCCAGAGTATGCAGTCAATTCTATTAAA...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTAACTCGGCAGAGTTCTaGAAAGTCCCAATGATCCTG +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESNSAEF*KVPMIL
Trigger: CAGGATCATTGGGACTTTGCAGAACTCTGCCGAGTT...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTCATGTATGAATTCTTaGGGCAATGAAAGGCATCTG +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPSCMNS*GNERHL
Trigger: CAGATGCCTTTCATTGCCGCAAGAATTCATACATGA...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTAATTCAGTTGTGCAATaGATTTCTCAGCTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPNSVVQ*ISQLSK
Trigger: CTTGGACAGCTGAGAAATCCATTGCACAACTGAATT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTCTCCACAAGCATACTTaGAGAAGTCTGTACATGGCT +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESLHKHT*RSLYMA
Trigger: AGCCATGTACAGACTTCTTCAAGTATGCTTGTGGAG...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCTTGATCCCAGTTATCTaGTGCTACTGGCCACCCATA +
Preference number: 4 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGLIPVI*CYWPPI
Trigger: TATGGGTGGCCAGTAGCATCAGATAACTGGGATCAA...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTCTGGATTCATGTATaGATTCTTGCGGCAATGAAA +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPFWIHV*ILAAMK
Trigger: TTTCATTGCCGCAAGAATTCATACATGAATCCAGAA...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTCTTTATATATTCCAGTaGACTCATAGTAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPLYIFQ*THSSLW
Trigger: CCAGAGACTACTATGAGTGCACTGGAATATATAAAG...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTAATCCTTTCTTTAATTaGCAAGGCCTTTTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPNPFFN*QGLFFS
Trigger: GCTGAAGAAAAGGCCTTGGCAATTAAAGAAAGGATT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAAAATTATTTGCCGACTaGTGCGTCCACCAGTCAACG +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSKLFAD*CVHQST
Trigger: CGTTGACTGGTGGACGCAGCAGTCGGCAAATAATTT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTGAAGAAGTCTGTACATaGCTCAACAGAGGCATCCAT +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESEEVCT*LNRGIH
Trigger: ATGGATGCCTCTGTTGAGCCATGTACAGACTTCTTC...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTAGTTGTTCTGCAGCTTaGCCAATGTCATTTTGTTAT +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPSCSAA*PMSFCY
Trigger: ATAACAAAATGACATTGGCCAAGCTGCAGAACAACT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGCAAGCACAGAGAGGCTaGTCTCCAGGGGAGTCCATC +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLQAQRG*SPGESI
Trigger: GATGGACTCCCCTGGAGATCAGCCTCTCTGTGCTTG...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATGAGGCATCCATATTCTaGATCAGTCGAGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNEASIF*ISRAAD
Trigger: ATCAGCTGCTCGACTGATTCAGAATATGGATGCCTC...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTATCTGGTAACAGTTTaGGTAGAGGTTGTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNYLVTV*VEVVRL
Trigger: GAGGCGGACAACCTCTACTCAAACTGTTACCAGATA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATGCCATCATCATAGGTTaGATAGAGAGCGATCATTGT +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDAIIIG*IESDHC
Trigger: ACAATGATCGCTCTCTATGCAACCTATGATGATGGC...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGCTTCAACCACGTGCTTaGTCTCTCCAGCAAAAGCCG +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERLQPRA*SLQQKP
Trigger: CGGCTTTTGCTGGAGAGAGCAAGCACGTGGTTGAAG...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTATTTCCAAAGAGAGCTaGTTTTCATCAATAGGCAAA +
Preference number: 4 (lower is better)
Translates to: AEGQICALVPCCTEHRPPISKES*FSSIGK
Trigger: TTTGCCTATTGATGAAAACCAGCTCTCTTTGGAAAT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTGTCATTTCGGTCTTCTaGTTTAGTTGTAGCATTGGC +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESVISVF*FSCSIG
Trigger: GCCAATGCTACAACTAAACCAGAAGACCGAAATGAC...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATCTCCACAAGCATACTTaGAGAAGTCTGTACATGGCT +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNLHKHT*RSLYMA
Trigger: AGCCATGTACAGACTTCTTCAAGTATGCTTGTGGAG...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATAGGAATAAAATGCATTaGCTACAGCTGCTCCACTTA +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDRNKMH*LQLLHL
Trigger: TAAGTGGAGCAGCTGTAGTCAATGCATTTTATTCCT...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTAGGAATAAAATGCATTaGCTACAGCTGCTCCACTTA +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESRNKMH*LQLLHL
Trigger: TAAGTGGAGCAGCTGTAGTCAATGCATTTTATTCCT...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGTGGATTGCTGAGCACTaGAGAATGGGGGCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERWIAEH*RMGAAK
Trigger: TTTTGCAGCCCCCATTCTTCAGTGCTCAGCAATCCA...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCAATGAGTTGGATTGCTaGGCACTGAAGAATGGGGGC +
Preference number: 4 (lower is better)
Translates to: LAHLHFQCYTKSPPYPPTNELDC*ALKNGG
Trigger: GCCCCCATTCTTCAGTGCTCAGCAATCCAACTCATT...GGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCATAGTTGTTTGTGATTaGGGTCAAGTCCAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGIVVCD*GQVQGV
Trigger: TACTCCCTGGACTTGACCTCAATCACAAACAACTAT...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTAATTCAGTTGTGCAATaGATTTCTCAGCTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESNSVVQ*ISQLSK
Trigger: CTTGGACAGCTGAGAAATCCATTGCACAACTGAATT...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCAACTGGTCTCGGGAATaGCGTTGCGTTTCAACCAGC +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILNWSRE*RCVSTS
Trigger: GCTGGTTGAAACGCAACGTCATTCCCGAGACCAGTT...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCTATCTGGTAACAGTTTaGGTAGAGGTTGTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: LAHLHFQCYTKSPPYPPTYLVTV*VEVVRL
Trigger: GAGGCGGACAACCTCTACTCAAACTGTTACCAGATA...GGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATCCTTGTAGTTTCGGCTaGGGCTGCTTACAAGATCCA +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYPCSFG*GCLQDP
Trigger: TGGATCTTGTAAGCAGCCTCAGCCGAAACTACAAGG...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCATGTTCTCATTGGAAATaGTGTCATCAGGATAGCCAA +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSCSHWK*CHQDSQ
Trigger: TTGGCTATCCTGATGACATCATTTCCAATGAGAACA...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCATATCTGATTTCGGCCTaGGGAATAAAATGCATTGAC +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSYLISA*GIKCID
Trigger: GTCAATGCATTTTATTCCTCAGGCCGAAATCAGATA...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATTGGATTGCTGAGCACTaGAGAATGGGGGCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYWIAEH*RMGAAK
Trigger: TTTTGCAGCCCCCATTCTTCAGTGCTCAGCAATCCA...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGCCCCCATAGTTCAATaGGTTGGATTGCTGAGCACT +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYAPIVQ*VGLLST
Trigger: AGTGCTCAGCAATCCAACTCATTGAACTATGGGGGC...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTGAGCAGCTGATTTTATaGAGTCTGATGATTTGCAAA +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESEQLIL*SLMICK
Trigger: TTTGCAAATCATCAGACTGCATAAAATCAGCTGCTC...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATAAGGTTTTTGCTTTCTaGACTGCTACTATGTCTTCA +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDKVFAF*TATMSS
Trigger: TGAAGACATAGTAGCAGTGCAGAAAGCAAAAACCTT...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATTCTGTACAAGGTTTTTaGTTTCTGCACTGCTACTAT +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDSVQGF*FLHCYY
Trigger: ATAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGA...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTCTTTATATATTCCAGTaGACTCATAGTAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESLYIFQ*THSSLW
Trigger: CCAGAGACTACTATGAGTGCACTGGAATATATAAAG...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGTCCCATAAAGGGCCTTaGGGAAAGCATTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERSHKGP*GKHFWT
Trigger: AGTCCAGAAATGCTTTCCGCAAGGCCCTTTATGGGA...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGCTTCAACCACGTGCTTaGTCTCTCCAGCAAAAGCCG +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLLQPRA*SLQQKP
Trigger: CGGCTTTTGCTGGAGAGAGCAAGCACGTGGTTGAAG...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGAAATTATTTGCCGACTaGTGCGTCCACCAGTCAACG +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERKLFAD*CVHQST
Trigger: CGTTGACTGGTGGACGCAGCAGTCGGCAAATAATTT...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCATCATGTATGAATTCTTaGGGCAATGAAAGGCATCTG +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSSCMNS*GNERHL
Trigger: CAGATGCCTTTCATTGCCGCAAGAATTCATACATGA...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTCTATGTCTTCAGTTTTaGGTTCTTGAAGGACATCTT +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESLCLQF*VLEGHL
Trigger: AAGATGTCCTTCAAGAACCCAAAACTGAAGACATAG...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCAATTCAGTTGTGCAATaGATTTCTCAGCTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGNSVVQ*ISQLSK
Trigger: CTTGGACAGCTGAGAAATCCATTGCACAACTGAATT...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATACTCATAGTAGTCTCTaGAAGGGAGGCCAAGTCGAG +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYTHSSL*KGGQVE
Trigger: CTCGACTTGGCCTCCCTTCCAGAGACTACTATGAGT...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGAACTCATAGTAGTCTCTaGAAGGGAGGCCAAGTCGAG +
Preference number: 4 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVRTHSSL*KGGQVE
Trigger: CTCGACTTGGCCTCCCTTCCAGAGACTACTATGAGT...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATAGTTGTTCTGCAGCTTaGCCAATGTCATTTTGTTAT +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDSCSAA*PMSFCY
Trigger: ATAACAAAATGACATTGGCCAAGCTGCAGAACAACT...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTGAAAAGTTTCCATACTaGTATACCATACACTGGGAT +
Preference number: 4 (lower is better)
Translates to: QNCTSLKATVCMGVLWESEKFPY*YTIHWD
Trigger: ATCCCAGTGTATGGTATACCAGTATGGAAACTTTTC...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCATTGGCTTTGGAGCATTaGTATCAGTTATATCCATCT +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSLALEH*YQLYPS
Trigger: AGATGGATATAACTGATATCAATGCTCCAAAGCCAA...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGAAACTGGTCTCGGGAATaGCGTTGCGTTTCAACCAGC +
Preference number: 4 (lower is better)
Translates to: SLNPRLITYLLGRAFESGNWSRE*RCVSTS
Trigger: GCTGGTTGAAACGCAACGTCATTCCCGAGACCAGTT...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTATCTGATTTCGGCCTaGGGAATAAAATGCATTGAC +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNYLISA*GIKCID
Trigger: GTCAATGCATTTTATTCCTCAGGCCGAAATCAGATA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTGGATTGCTGAGCACTaGAGAATGGGGGCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILWIAEH*RMGAAK
Trigger: TTTTGCAGCCCCCATTCTTCAGTGCTCAGCAATCCA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGAATGAGTTGGATTGCTaGGCACTGAAGAATGGGGGC +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLNELDC*ALKNGG
Trigger: GCCCCCATTCTTCAGTGCTCAGCAATCCAACTCATT...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTAATGAGTTGGATTGCTaGGCACTGAAGAATGGGGGC +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCNELDC*ALKNGG
Trigger: GCCCCCATTCTTCAGTGCTCAGCAATCCAACTCATT...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGGCCCCCATAGTTCAATaGGTTGGATTGCTGAGCACT +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLAPIVQ*VGLLST
Trigger: AGTGCTCAGCAATCCAACTCATTGAACTATGGGGGC...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TGTGCCCAAGGTCACTTTGGCAGTAGAACTAGAACAAATCCTCAACTTCCTGGGTGCAGTCTGATGATTTaGAAATGCCATCATCATAGG +
Preference number: 4 (lower is better)
Translates to: CAQGHFGSRTRTNPQLPGCSLMI*KCHHHR
Trigger: CCTATGATGATGGCATTTGCAAATCATCAGACTGCA...CCCAGGAAGTTGAGGATTTGTTCTAGTTCTACTGCCAAAGTGACCTTGGGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATTTTTGCTTTCTGCACTaGTACTATGTCTTCAGTTTT +
Preference number: 4 (lower is better)
Translates to: GQICALVPCCTEHRPPFDFCFLH*YYVFSF
Trigger: AAAACTGAAGACATAGTAGCAGTGCAGAAAGCAAAA...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCAAGGTTTTTGCTTTCTaGACTGCTACTATGTCTTCA +
Preference number: 4 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGKVFAF*TATMSS
Trigger: TGAAGACATAGTAGCAGTGCAGAAAGCAAAAACCTT...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCATCTGTACAAGGTTTTTaGTTTCTGCACTGCTACTAT +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSSVQGF*FLHCYY
Trigger: ATAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGA...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATTCCCATAAAGGGCCTTaGGGAAAGCATTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYSHKGP*GKHFWT
Trigger: AGTCCAGAAATGCTTTCCGCAAGGCCCTTTATGGGA...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGACTTCAACCACGTGCTTaGTCTCTCCAGCAAAAGCCG +
Preference number: 4 (lower is better)
Translates to: SLNPRLITYLLGRAFESGLQPRA*SLQQKP
Trigger: CGGCTTTTGCTGGAGAGAGCAAGCACGTGGTTGAAG...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTTTAATAGAATTGACTaGATACTCTGGCCGGTAGGT +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNFNRID*ILWPVG
Trigger: ACCTACCGGCCAGAGTATGCAGTCAATTCTATTAAA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGAAACTCGGCAGAGTTCTaGAAAGTCCCAATGATCCTG +
Preference number: 4 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVRNSAEF*KVPMIL
Trigger: CAGGATCATTGGGACTTTGCAGAACTCTGCCGAGTT...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTCATGTATGAATTCTTaGGGCAATGAAAGGCATCTG +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNSCMNS*GNERHL
Trigger: CAGATGCCTTTCATTGCCGCAAGAATTCATACATGA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTCGCTGTTTCTTCTTTaGCTTTGGAGCATTGATATC +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNSLFLL*LWSIDI
Trigger: GATATCAATGCTCCAAAGCCAAAGAAGAAACAGCGA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp CTGGAGCATAAACTTCGAGCACGAACACCAGCCTTTCCAGACCCTTTGTTTCTGCTATGTCTTCAGTTTTaGGTTCTTGAAGGACATCTT +
Preference number: 4 (lower is better)
Translates to: LEHKLRARTPAFPDPLFLLCLQF*VLEGHL
Trigger: AAGATGTCCTTCAAGAACCCAAAACTGAAGACATAG...CAGAAACAAAGGGTCTGGAAAGGCTGGTGTTCGTGCTCGAAGTTTATGCTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAGAAAAGTTTCCATACTaGTATACCATACACTGGGAT +
Preference number: 4 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSEKFPY*YTIHWD
Trigger: ATCCCAGTGTATGGTATACCAGTATGGAAACTTTTC...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TGTGCCCAAGGTCACTTTGGCAGTAGAACTAGAACAAATCCTCAACTTCCTGGGTTGGCTTTGGAGCATTaGTATCAGTTATATCCATCT +
Preference number: 4 (lower is better)
Translates to: CAQGHFGSRTRTNPQLPGLALEH*YQLYPS
Trigger: AGATGGATATAACTGATATCAATGCTCCAAAGCCAA...CCCAGGAAGTTGAGGATTTGTTCTAGTTCTACTGCCAAAGTGACCTTGGGCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTTGGCTTTGGAGCATTaGTATCAGTTATATCCATCT +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNLALEH*YQLYPS
Trigger: AGATGGATATAACTGATATCAATGCTCCAAAGCCAA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGGAGGCATCCATATTCTaGATCAGTCGAGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLEASIF*ISRAAD
Trigger: ATCAGCTGCTCGACTGATTCAGAATATGGATGCCTC...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATCTCCACAAGCATACTTaGAGAAGTCTGTACATGGCT +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYLHKHT*RSLYMA
Trigger: AGCCATGTACAGACTTCTTCAAGTATGCTTGTGGAG...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATGGACATCTTTCAAAATaGCTTCTAGCTCATCTCTTA +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNGHLSK*LLAHLL
Trigger: TAAGAGATGAGCTAGAAGTCATTTTGAAAGATGTCC...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTATCTGGTAACAGTTTaGGTAGAGGTTGTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILYLVTV*VEVVRL
Trigger: GAGGCGGACAACCTCTACTCAAACTGTTACCAGATA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTTTGATCCCAGTTATCTaGTGCTACTGGCCACCCATA +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCLIPVI*CYWPPI
Trigger: TATGGGTGGCCAGTAGCATCAGATAACTGGGATCAA...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTTGATCCCAGTTATCTaGTGCTACTGGCCACCCATA +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILLIPVI*CYWPPI
Trigger: TATGGGTGGCCAGTAGCATCAGATAACTGGGATCAA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGGAATTCTTGCGGCAATaGAAGGCATCTGCAAACTCG +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLEFLRQ*KASANS
Trigger: CGAGTTTGCAGATGCCTTTCATTGCCGCAAGAATTC...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCGAATTCTTGCGGCAATaGAAGGCATCTGCAAACTCG +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILEFLRQ*KASANS
Trigger: CGAGTTTGCAGATGCCTTTCATTGCCGCAAGAATTC...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATTTCTGGATTCATGTATaGATTCTTGCGGCAATGAAA +
Preference number: 4 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNFWIHV*ILAAMK
Trigger: TTTCATTGCCGCAAGAATTCATACATGAATCCAGAA...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTCCCATAAAGGGCCTTaGGGAAAGCATTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLSHKGP*GKHFWT
Trigger: AGTCCAGAAATGCTTTCCGCAAGGCCCTTTATGGGA...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATTGCATTGACTACAGCTaGTCCACTTATCCACTCATC +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYCIDYS*STYPLI
Trigger: GATGAGTGGATAAGTGGAGCAGCTGTAGTCAATGCA...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGAAATTATTTGCCGACTaGTGCGTCCACCAGTCAACG +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLKLFAD*CVHQST
Trigger: CGTTGACTGGTGGACGCAGCAGTCGGCAAATAATTT...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGAGAAGTGCCATATGTTTaGTCCCAGTTATCTGATGCT +
Preference number: 4 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVREVPYV*SQLSDA
Trigger: AGCATCAGATAACTGGGATCAAACATATGGCACTTC...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGAGGTCATCCAAAGTCTaGATAAAAACTTCCCGGATT +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERRSSKV*IKTSRI
Trigger: AATCCGGGAAGTTTTTATTCAGACTTTGGATGACCT...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATATAGTTGTTTGTGATTaGGGTCAAGTCCAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYIVVCD*GQVQGV
Trigger: TACTCCCTGGACTTGACCTCAATCACAAACAACTAT...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTCGGAGCTTCTTTAGCTaGTTGCTTTGGCTGAATTTC +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCRSFFS*LLWLNF
Trigger: GAAATTCAGCCAAAGCAAGCAGCTAAAGAAGCTCCG...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTTGCATTGACTACAGCTaGTCCACTTATCCACTCATC +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCCIDYS*STYPLI
Trigger: GATGAGTGGATAAGTGGAGCAGCTGTAGTCAATGCA...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGTCGCTGTTTCTTCTTTaGCTTTGGAGCATTGATATC +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERSLFLL*LWSIDI
Trigger: GATATCAATGCTCCAAAGCCAAAGAAGAAACAGCGA...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCGAAGAAGTCTGTACATaGCTCAACAGAGGCATCCAT +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILEEVCT*LNRGIH
Trigger: ATGGATGCCTCTGTTGAGCCATGTACAGACTTCTTC...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR CAA 72 bp GTCACCAAGTCACCTGAGTGGTCCAGCTCTTCACATTaGCACATTTGGCTTCAGCATAATCCAATTATAATT +
Preference number: 4 (lower is better)
Translates to: VTKSPEWSSSSH*HIWLQHNPIII
Trigger: AATTATAATTGGATTATGCTGAAGCCAAATGTGCAAATGTGAAGAGCTGGACCACTCAGGTGACTTGGTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAAGTGCCATATGTTTaGTCCCAGTTATCTGATGCT +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCEVPYV*SQLSDA
Trigger: AGCATCAGATAACTGGGATCAAACATATGGCACTTC...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCGAAGTGCCATATGTTTaGTCCCAGTTATCTGATGCT +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILEVPYV*SQLSDA
Trigger: AGCATCAGATAACTGGGATCAAACATATGGCACTTC...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATAGGTCATCCAAAGTCTaGATAAAAACTTCCCGGATT +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYRSSKV*IKTSRI
Trigger: AATCCGGGAAGTTTTTATTCAGACTTTGGATGACCT...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGATGTTCTCATTGGAAATaGTGTCATCAGGATAGCCAA +
Preference number: 4 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVRCSHWK*CHQDSQ
Trigger: TTGGCTATCCTGATGACATCATTTCCAATGAGAACA...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTATAGTTGTTTGTGATTaGGGTCAAGTCCAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCIVVCD*GQVQGV
Trigger: TACTCCCTGGACTTGACCTCAATCACAAACAACTAT...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGCCATCATCATAGGTTaGATAGAGAGCGATCATTGT +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCAIIIG*IESDHC
Trigger: ACAATGATCGCTCTCTATGCAACCTATGATGATGGC...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGAAGGTTTTTGCTTTCTaGACTGCTACTATGTCTTCA +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERKVFAF*TATMSS
Trigger: TGAAGACATAGTAGCAGTGCAGAAAGCAAAAACCTT...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGCTTTATATATTCCAGTaGACTCATAGTAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERLYIFQ*THSSLW
Trigger: CCAGAGACTACTATGAGTGCACTGGAATATATAAAG...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGAATCCTTTCTTTAATTaGCAAGGCCTTTTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERNPFFN*QGLFFS
Trigger: GCTGAAGAAAAGGCCTTGGCAATTAAAGAAAGGATT...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATCGGAGCTTCTTTAGCTaGTTGCTTTGGCTGAATTTC +
Preference number: 4 (lower is better)
Translates to: QIQLDPFLATRDRLNLENRSFFS*LLWLNF
Trigger: GAAATTCAGCCAAAGCAAGCAGCTAAAGAAGCTCCG...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGGTCATTTCGGTCTTCTaGTTTAGTTGTAGCATTGGC +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLVISVF*FSCSIG
Trigger: GCCAATGCTACAACTAAACCAGAAGACCGAAATGAC...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGGAAAAGTTTCCATACTaGTATACCATACACTGGGAT +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSEREKFPY*YTIHWD
Trigger: ATCCCAGTGTATGGTATACCAGTATGGAAACTTTTC...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTAGGTCATCCAAAGTCTaGATAAAAACTTCCCGGATT +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCRSSKV*IKTSRI
Trigger: AATCCGGGAAGTTTTTATTCAGACTTTGGATGACCT...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTGTTCTCATTGGAAATaGTGTCATCAGGATAGCCAA +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILCSHWK*CHQDSQ
Trigger: TTGGCTATCCTGATGACATCATTTCCAATGAGAACA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGATTCTGGATTCATGTATaGATTCTTGCGGCAATGAAA +
Preference number: 4 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVRFWIHV*ILAAMK
Trigger: TTTCATTGCCGCAAGAATTCATACATGAATCCAGAA...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATGCCATCATCATAGGTTaGATAGAGAGCGATCATTGT +
Preference number: 4 (lower is better)
Translates to: QIQLDPFLATRDRLNLENAIIIG*IESDHC
Trigger: ACAATGATCGCTCTCTATGCAACCTATGATGATGGC...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGAGCAGCTGATTTTATaGAGTCTGATGATTTGCAAA +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYEQLIL*SLMICK
Trigger: TTTGCAAATCATCAGACTGCATAAAATCAGCTGCTC...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGTTTAGAATTCAGTTGTaGAATGGATTTCTCAGCTGT +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERFRIQL*NGFLSC
Trigger: ACAGCTGAGAAATCCATTGCACAACTGAATTCTAAA...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCTTTAGAATTCAGTTGTaGAATGGATTTCTCAGCTGT +
Preference number: 4 (lower is better)
Translates to: LAHLHFQCYTKSPPYPPTFRIQL*NGFLSC
Trigger: ACAGCTGAGAAATCCATTGCACAACTGAATTCTAAA...GGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGAATCCACATATGCTGTaGAAGCCTCTTTATATATTC +
Preference number: 4 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERNPHML*KPLYIF
Trigger: GAATATATAAAGAGGCTTGCACAGCATATGTGGATT...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCGGACATCTTTCAAAATaGCTTCTAGCTCATCTCTTA +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILGHLSK*LLAHLL
Trigger: TAAGAGATGAGCTAGAAGTCATTTTGAAAGATGTCC...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGGACATCTTTCAAAATaGCTTCTAGCTCATCTCTTA +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCGHLSK*LLAHLL
Trigger: TAAGAGATGAGCTAGAAGTCATTTTGAAAGATGTCC...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR TCA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATAGGAATAAAATGCATTaGCTACAGCTGCTCCACTTA +
Preference number: 4 (lower is better)
Translates to: QIQLDPFLATRDRLNLENRNKMH*LQLLHL
Trigger: TAAGTGGAGCAGCTGTAGTCAATGCATTTTATTCCT...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR TCA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATTATCTGATTTCGGCCTaGGGAATAAAATGCATTGAC +
Preference number: 4 (lower is better)
Translates to: QIQLDPFLATRDRLNLENYLISA*GIKCID
Trigger: GTCAATGCATTTTATTCCTCAGGCCGAAATCAGATA...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTCTGTACAAGGTTTTTaGTTTCTGCACTGCTACTAT +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILSVQGF*FLHCYY
Trigger: ATAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATTTTAGAATTCAGTTGTaGAATGGATTTCTCAGCTGT +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYFRIQL*NGFLSC
Trigger: ACAGCTGAGAAATCCATTGCACAACTGAATTCTAAA...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR GCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATAATCCACATATGCTGTaGAAGCCTCTTTATATATTC +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYNPHML*KPLYIF
Trigger: GAATATATAAAGAGGCTTGCACAGCATATGTGGATT...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGATCGCTGTTTCTTCTTTaGCTTTGGAGCATTGATATC +
Preference number: 4 (lower is better)
Translates to: SLNPRLITYLLGRAFESGSLFLL*LWSIDI
Trigger: GATATCAATGCTCCAAAGCCAAAGAAGAAACAGCGA...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGCTATGTCTTCAGTTTTaGGTTCTTGAAGGACATCTT +
Preference number: 4 (lower is better)
Translates to: SALSVNTVLYRQHESCSLLCLQF*VLEGHL
Trigger: AAGATGTCCTTCAAGAACCCAAAACTGAAGACATAG...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATATTTCCAAAGAGAGCTaGTTTTCATCAATAGGCAAA +
Preference number: 4 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYISKES*FSSIGK
Trigger: TTTGCCTATTGATGAAAACCAGCTCTCTTTGGAAAT...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CCA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCAGTTGTTCTGCAGCTTaGCCAATGTCATTTTGTTAT +
Preference number: 4 (lower is better)
Translates to: KNLNITKVGEIGEPFQILSCSAA*PMSFCY
Trigger: ATAACAAAATGACATTGGCCAAGCTGCAGAACAACT...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR CAA 72 bp TTGCTGTTGAGGCAATATCTCATTGGAGAACCAGTCTaGCTTAAAACACTATATGTTCCAAGTTGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: LLLRQYLIGEPV*LKTLYVPSCLS
Trigger: TGAAAGGCAACTTGGAACATATAGTGTTTTAAGCAAGACTGGTTCTCCAATGAGATATTGCCTCAACAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp GCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTAATCCACATATGCTGTaGAAGCCTCTTTATATATTC +
Preference number: 4 (lower is better)
Translates to: ALSVNTVLYRQHESCSLCNPHML*KPLYIF
Trigger: GAATATATAAAGAGGCTTGCACAGCATATGTGGATT...ACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
3UTR CAA 72 bp ACCACACTACTCCATGAACATTGCAGTAATACATACTaGATTCTATGTTTTGGGGGATCCACAATGTTCTTA +
Preference number: 4 (lower is better)
Translates to: TTLLHEHCSNTY*ILCFGGSTMFL
Trigger: TAAGAACATTGTGGATCCCCCAAAACATAGAATCAAGTATGTATTACTGCAATGTTCATGGAGTAGTGTGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR GCA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATTTTTGCTTTCTGCACTaGTACTATGTCTTCAGTTTT +
Preference number: 4 (lower is better)
Translates to: QIQLDPFLATRDRLNLENFCFLH*YYVFSF
Trigger: AAAACTGAAGACATAGTAGCAGTGCAGAAAGCAAAA...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CCA 90 bp AGCCTAAACCCAAGGTTAATAACATATCTACTAGGTAGAGCCTTTGAATCTGGAATTTCCAAAGAGAGCTaGTTTTCATCAATAGGCAAA +
Preference number: 4 (lower is better)
Translates to: SLNPRLITYLLGRAFESGISKES*FSSIGK
Trigger: TTTGCCTATTGATGAAAACCAGCTCTCTTTGGAAAT...TCCAGATTCAAAGGCTCTACCTAGTAGATATGTTATTAACCTTGGGTTTAGGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
3UTR CAA 72 bp TTGTTTCATACTCTGGTTTATTATAGGGGATTATATTaGATTTGTAGCCATTTCCCCCATTTCCTGCCATCT +
Preference number: 4 (lower is better)
Translates to: LFHTLVYYRGLY*ICSHFPHFLPS
Trigger: AGATGGCAGGAAATGGGGGAAATGGCTACAAATCAAATATAATCCCCTATAATAAACCAGAGTATGAAACAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTCCTCCACAAGCATACTaGAAGAAGTCTGTACATGGC +
Preference number: 5 (lower is better)
Translates to: AEGQICALVPCCTEHRPPPPQAY*KKSVHG
Trigger: GCCATGTACAGACTTCTTCAAGTATGCTTGTGGAGG...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTCTGAATGACTTCCCATaGACCTCCAGGGAAAAGTTG +
Preference number: 5 (lower is better)
Translates to: AEGQICALVPCCTEHRPPLNDFP*TSREKL
Trigger: CAACTTTTCCCTGGAGGTCAATGGGAAGTCATTCAG...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCGTCTCGGGAATGACGTaGCGTTTCAACCAGCCTCCA +
Preference number: 5 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGVSGMT*RFNQPP
Trigger: TGGAGGCTGGTTGAAACGCAACGTCATTCCCGAGAC...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTATATCTGGTAACAGTTaGAGTAGAGGTTGTCCGCCT +
Preference number: 5 (lower is better)
Translates to: AEGQICALVPCCTEHRPPISGNS*SRGCPP
Trigger: AGGCGGACAACCTCTACTCAAACTGTTACCAGATAT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTAGTGTATTAATTCCATaGAGATGCTGTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: AEGQICALVPCCTEHRPPSVLIP*RCCPPA
Trigger: AGCAGGTGGACAGCATCTCAATGGAATTAATACACT...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp GGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCCTCCACAAGCATACTaGAAGAAGTCTGTACATGGC +
Preference number: 5 (lower is better)
Translates to: GQICALVPCCTEHRPPFDPPQAY*KKSVHG
Trigger: GCCATGTACAGACTTCTTCAAGTATGCTTGTGGAGG...ATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAACCTCCAGGGAAAAGTaGTTCTGCAGCTTGGCCAAT +
Preference number: 5 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSTSREK*FCSLAN
Trigger: ATTGGCCAAGCTGCAGAACAACTTTTCCCTGGAGGT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGGTCTCGGGAATGACGTaGCGTTTCAACCAGCCTCCA +
Preference number: 5 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERVSGMT*RFNQPP
Trigger: TGGAGGCTGGTTGAAACGCAACGTCATTCCCGAGAC...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCCTGAATGACTTCCCATaGACCTCCAGGGAAAAGTTG +
Preference number: 5 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGLNDFP*TSREKL
Trigger: CAACTTTTCCCTGGAGGTCAATGGGAAGTCATTCAG...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp GCTGAGGGGCAAATCTGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTCTCTGGGAGAATATTaGGTAAGAATAGGCTTAAGT +
Preference number: 5 (lower is better)
Translates to: AEGQICALVPCCTEHRPPSLGEY*VRIGLS
Trigger: ACTTAAGCCTATTCTTACCAAATATTCTCCCAGAGA...AGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACAGATTTGCCCCTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAATATCTGGTAACAGTTaGAGTAGAGGTTGTCCGCCT +
Preference number: 5 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSISGNS*SRGCPP
Trigger: AGGCGGACAACCTCTACTCAAACTGTTACCAGATAT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCATATCTGGTAACAGTTaGAGTAGAGGTTGTCCGCCT +
Preference number: 5 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGISGNS*SRGCPP
Trigger: AGGCGGACAACCTCTACTCAAACTGTTACCAGATAT...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp GAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTTTGGAAGGAGCATGAATCTGAATGACTTCCCATaGACCTCCAGGGAAAAGTTG +
Preference number: 5 (lower is better)
Translates to: EGHSLYGSSLGEFGRSMNLNDFP*TSREKL
Trigger: CAACTTTTCCCTGGAGGTCAATGGGAAGTCATTCAG...ATTCATGCTCCTTCCAAACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTCTTCAGCTTTCTTTTTaGTCTCAGCATCCATCCAAG +
Preference number: 5 (lower is better)
Translates to: QNCTSLKATVCMGVLWESLQLSF*SQHPSK
Trigger: CTTGGATGGATGCTGAGACAAAAAAGAAAGCTGAAG...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp CAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATGGGAGTTCTTTGGGAGAGTAGTGTATTAATTCCATaGAGATGCTGTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: QNCTSLKATVCMGVLWESSVLIP*RCCPPA
Trigger: AGCAGGTGGACAGCATCTCAATGGAATTAATACACT...ACTCTCCCAAAGAACTCCCATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp AGAATTCAAGAAGCAGGTACAGTGGAGGCTGCCCATCTCGATTCAGACATAGGCATAGGCTCTGTATGCTaGGCCAATACCTCCATTATC +
Preference number: 5 (lower is better)
Translates to: RIQEAGTVEAAHLDSDIGIGSVC*ANTSII
Trigger: GATAATGGAGGTATTGGCCAAGCATACAGAGCCTAT...GCCTATGTCTGAATCGAGATGGGCAGCCTCCACTGTACCTGCTTCTTGAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAATAGGCTCTGTATGCTaGGCCAATACCTCCATTATC +
Preference number: 5 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSIGSVC*ANTSII
Trigger: GATAATGGAGGTATTGGCCAAGCATACAGAGCCTAT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGACCTCCAGGGAAAAGTaGTTCTGCAGCTTGGCCAAT +
Preference number: 5 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERTSREK*FCSLAN
Trigger: ATTGGCCAAGCTGCAGAACAACTTTTCCCTGGAGGT...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 90 bp ACCCGACATTTCCTTTCTGGATTCATGTATGAATTCTTGCGGCAATaGAAGGCATCTGCAAACTCGGCAGAGTTCTGCAAAGTCCCAATG +
Preference number: 5 (lower is better)
Translates to: TRHFLSGFMYEFLRQ*KASANSAEFCKVPM
Trigger: CATTGGGACTTTGCAGAACTCTGCCGAGTTTGCAGATGCCTTTCATTGCCGCAAGAATTCATACATGAATCCAGAAAGGAAATGTCGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAATCTGTACAAGGTTTTaGCTTTCTGCACTGCTACTA +
Preference number: 5 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSICTRF*LSALLL
Trigger: TAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGAT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TGTGCTTTGGTGCCCTGCTGTACTGAGCATCGTCCTCCTTTTGATCAGAAGTCAATCAATAGGCAAACTTaGTTCCTGACGAATCAGTCT +
Preference number: 5 (lower is better)
Translates to: CALVPCCTEHRPPFDQKSINRQT*FLTNQS
Trigger: AGACTGATTCGTCAGGAACAAAGTTTGCCTATTGAT...TGACTTCTGATCAAAAGGAGGACGATGCTCAGTACAGCAGGGCACCAAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATACCTCCAGGGAAAAGTaGTTCTGCAGCTTGGCCAAT +
Preference number: 5 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYTSREK*FCSLAN
Trigger: ATTGGCCAAGCTGCAGAACAACTTTTCCCTGGAGGT...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TGTGCCCAAGGTCACTTTGGCAGTAGAACTAGAACAAATCCTCAACTTCCTGGGCTTCAGCTTTCTTTTTaGTCTCAGCATCCATCCAAG +
Preference number: 5 (lower is better)
Translates to: CAQGHFGSRTRTNPQLPGLQLSF*SQHPSK
Trigger: CTTGGATGGATGCTGAGACAAAAAAGAAAGCTGAAG...CCCAGGAAGTTGAGGATTTGTTCTAGTTCTACTGCCAAAGTGACCTTGGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS TCA 90 bp CAGCGGGGAAGACTATCTGATTTCGGCCTGAGGAATAAAATGCATTaGCTACAGCTGCTCCACTTATCCACTCATCTTTGTCCACTTTTT +
Preference number: 5 (lower is better)
Translates to: QRGRLSDFGLRNKMH*LQLLHLSTHLCPLF
Trigger: AAAAAGTGGACAAAGATGAGTGGATAAGTGGAGCAGCTGTAGTCAATGCATTTTATTCCTCAGGCCGAAATCAGATAGTCTTCCCCGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS GCA 90 bp CCAAGTAAGGTCATCCAAAGTCTGAATAAAAACTTCCCGGATTTGTaGAATCAAGTCTTCAACCACGTGCTTGCTCTCTCCAGCAAAAGC +
Preference number: 5 (lower is better)
Translates to: PSKVIQSLNKNFPDL*NQVFNHVLALSSKS
Trigger: GCTTTTGCTGGAGAGAGCAAGCACGTGGTTGAAGACTTGATTGCACAAATCCGGGAAGTTTTTATTCAGACTTTGGATGACCTTACTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGACCTCCACAAGCATACTaGAAGAAGTCTGTACATGGC +
Preference number: 5 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVRPPQAY*KKSVHG
Trigger: GCCATGTACAGACTTCTTCAAGTATGCTTGTGGAGG...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS GCA 90 bp GAATCAGTCGAGCAGCTGATTTTATGCAGTCTGATGATTTGCAAATaGCATCATCATAGGTTGCATAGAGAGCGATCATTGTCACCGCTA +
Preference number: 5 (lower is better)
Translates to: ESVEQLILCSLMICK*HHHRLHRERSLSPL
Trigger: TAGCGGTGACAATGATCGCTCTCTATGCAACCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGCTGCTCGACTGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS-3UTR CAA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATCTTATCCACTCATCTTaGTCCACTTTTTCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYLIHSS*STFSRS
Trigger: GCTCCGAGAAAAAGTGGACAAAGATGAGTGGATAAG...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCTCTGTTTTAATAGAATaGACTGCATACTCTGGCCGG +
Preference number: 5 (lower is better)
Translates to: LAHLHFQCYTKSPPYPPTSVLIE*TAYSGR
Trigger: CCGGCCAGAGTATGCAGTCAATTCTATTAAAACAGA...GGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp TTCTCTACAGACAACATGAAAGCTGCAGTCTGTGTGAGAAACAGAAGTGAACGGTCTGTTTTAATAGAATaGACTGCATACTCTGGCCGG +
Preference number: 5 (lower is better)
Translates to: FSTDNMKAAVCVRNRSERSVLIE*TAYSGR
Trigger: CCGGCCAGAGTATGCAGTCAATTCTATTAAAACAGA...CCGTTCACTTCTGTTTCTCACACAGACTGCAGCTTTCATGTTGTCTGTAGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 90 bp GTCCCACACCACACCTGGGCAAAGTTCAGGAAAAATAGTTGTTTGTaGTTGAGGTCAAGTCCAGGGAGTAATTTTTCTTCACCATTCTTT +
Preference number: 5 (lower is better)
Translates to: VPHHTWAKFRKNSCL*LRSSPGSNFSSPFF
Trigger: AAAGAATGGTGAAGAAAAATTACTCCCTGGACTTGACCTCAATCACAAACAACTATTTTTCCTGAACTTTGCCCAGGTGTGGTGTGGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCATCAATAGGCAAACTTaGTTCCTGACGAATCAGTCT +
Preference number: 5 (lower is better)
Translates to: LAHLHFQCYTKSPPYPPTINRQT*FLTNQS
Trigger: AGACTGATTCGTCAGGAACAAAGTTTGCCTATTGAT...GGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATCTTCAGCTTTCTTTTTaGTCTCAGCATCCATCCAAG +
Preference number: 5 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYLQLSF*SQHPSK
Trigger: CTTGGATGGATGCTGAGACAAAAAAGAAAGCTGAAG...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGCTTATCCACTCATCTTaGTCCACTTTTTCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: SALSVNTVLYRQHESCSLLIHSS*STFSRS
Trigger: GCTCCGAGAAAAAGTGGACAAAGATGAGTGGATAAG...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGATAGGCTCTGTATGCTaGGCCAATACCTCCATTATC +
Preference number: 5 (lower is better)
Translates to: SALSVNTVLYRQHESCSLIGSVC*ANTSII
Trigger: GATAATGGAGGTATTGGCCAAGCATACAGAGCCTAT...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp ATGTATGGTAAAATGAGTTCAAAACTGCACGAGCCTGAAGGCCACAGTCTGTATTCTGTTTTAATAGAATaGACTGCATACTCTGGCCGG +
Preference number: 5 (lower is better)
Translates to: MYGKMSSKLHEPEGHSLYSVLIE*TAYSGR
Trigger: CCGGCCAGAGTATGCAGTCAATTCTATTAAAACAGA...ATACAGACTGTGGCCTTCAGGCTCGTGCAGTTTTGAACTCATTTTACCATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 90 bp TACTTGAAGAAGTCTGTACATGGCTCAACAGAGGCATCCATATTCTaGATCAGTCGAGCAGCTGATTTTATGCAGTCTGATGATTTGCAA +
Preference number: 5 (lower is better)
Translates to: YLKKSVHGSTEASIF*ISRAADFMQSDDLQ
Trigger: TTGCAAATCATCAGACTGCATAAAATCAGCTGCTCGACTGATTCAGAATATGGATGCCTCTGTTGAGCCATGTACAGACTTCTTCAAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS GCA 90 bp GTTCTTGAAGGACATCTGATTTTATGCAGTCTGATGATTTGCAAATaGCATCATCATAGGTTGCATAGAGAGCGATCATTGTCACCGCTA +
Preference number: 5 (lower is better)
Translates to: VLEGHLILCSLMICK*HHHRLHRERSLSPL
Trigger: TAGCGGTGACAATGATCGCTCTCTATGCAACCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGATGTCCTTCAAGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191633.6
CDS CCA 90 bp GTTGTTCTGCAGCTTGGCCAATGTCATTTTGTTATAAAGCAGCATTaGGTCATTTCGGTCTTCTGGTTTAGTTGTAGCATTGGCAATTTC +
Preference number: 5 (lower is better)
Translates to: VVLQLGQCHFVIKQH*VISVFWFSCSIGNF
Trigger: GAAATTGCCAATGCTACAACTAAACCAGAAGACCGAAATGACCCAATGCTGCTTTATAACAAAATGACATTGGCCAAGCTGCAGAACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGAGTGTATTAATTCCATaGAGATGCTGTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: SALSVNTVLYRQHESCSLSVLIP*RCCPPA
Trigger: AGCAGGTGGACAGCATCTCAATGGAATTAATACACT...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS GCA 90 bp TATTCTGAATCAGTCGAGCAGCTGATTTTATGCAGTCTGATGATTTaGAAATGCCATCATCATAGGTTGCATAGAGAGCGATCATTGTCA +
Preference number: 5 (lower is better)
Translates to: YSESVEQLILCSLMI*KCHHHRLHRERSLS
Trigger: TGACAATGATCGCTCTCTATGCAACCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGCTGCTCGACTGATTCAGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS-3UTR CAA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCATCTGTACAAGGTTTTaGCTTTCTGCACTGCTACTA +
Preference number: 5 (lower is better)
Translates to: KNLNITKVGEIGEPFQILICTRF*LSALLL
Trigger: TAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGAT...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp TCTGCTTTAAGTGTTAACACTGTTCTCTACAGACAACATGAAAGCTGCAGTCTGATCAATAGGCAAACTTaGTTCCTGACGAATCAGTCT +
Preference number: 5 (lower is better)
Translates to: SALSVNTVLYRQHESCSLINRQT*FLTNQS
Trigger: AGACTGATTCGTCAGGAACAAAGTTTGCCTATTGAT...CAGACTGCAGCTTTCATGTTGTCTGTAGAGAACAGTGTTAACACTTAAAGCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS-3UTR CAA 90 bp CTGATGACAAACCTGAAGGCTAAGCATTCATGGAGCAACACAGATACAGTTAGATCTCTGGGAGAATATTaGGTAAGAATAGGCTTAAGT +
Preference number: 5 (lower is better)
Translates to: LMTNLKAKHSWSNTDTVRSLGEY*VRIGLS
Trigger: ACTTAAGCCTATTCTTACCAAATATTCTCCCAGAGA...TCTAACTGTATCTGTGTTGCTCCATGAATGCTTAGCCTTCAGGTTTGTCATCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS TCA 90 bp ATTTCCAAAGAGAGCTGGTTTTCATCAATAGGCAAACTTTGTTCCTaGCGAATCAGTCTGGCCACAGAAATCATAAAATCCACATATGCT +
Preference number: 5 (lower is better)
Translates to: ISKESWFSSIGKLCS*RISLATEIIKSTYA
Trigger: AGCATATGTGGATTTTATGATTTCTGTGGCCAGACTGATTCGTCAGGAACAAAGTTTGCCTATTGATGAAAACCAGCTCTCTTTGGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS GCA 90 bp GCTATCAATAGCAGACTCATTTATACACGATCTGTACAAGGTTTTTaGTTTCTGCACTGCTACTATGTCTTCAGTTTTGGGTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: AINSRLIYTRSVQGF*FLHCYYVFSFGFLK
Trigger: CTTCAAGAACCCAAAACTGAAGACATAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGATCGTGTATAAATGAGTCTGCTATTGATAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000191633.6
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194836.6
CDS-3UTR CAA 90 bp CAGATACAGTTAGACCCTTTCTTAGCCACTAGGGACAGACTTAATCTTGAAAATATCTGTACAAGGTTTTaGCTTTCTGCACTGCTACTA +
Preference number: 5 (lower is better)
Translates to: QIQLDPFLATRDRLNLENICTRF*LSALLL
Trigger: TAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGAT...ATTTTCAAGATTAAGTCTGTCCCTAGTGGCTAAGAAAGGGTCTAACTGTATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
CDS-3UTR CAA 90 bp AAGAATCTCAACATCACTAAAGTGGGTGAAATAGGGGAACCGTTTCAGATACTCTCTCTGGGAGAATATTaGGTAAGAATAGGCTTAAGT +
Preference number: 5 (lower is better)
Translates to: KNLNITKVGEIGEPFQILSLGEY*VRIGLS
Trigger: ACTTAAGCCTATTCTTACCAAATATTCTCCCAGAGA...GAGTATCTGAAACGGTTCCCCTATTTCACCCACTTTAGTGATGTTGAGATTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS GCA 90 bp AGACTCATTTATACACGATCTGTACAAGGTTTTTGCTTTCTGCACTaGTACTATGTCTTCAGTTTTGGGTTCTTGAAGGACATCTTTCAA +
Preference number: 5 (lower is better)
Translates to: RLIYTRSVQGFCFLH*YYVFSFGFLKDIFQ
Trigger: TTGAAAGATGTCCTTCAAGAACCCAAAACTGAAGACATAGTAGCAGTGCAGAAAGCAAAAACCTTGTACAGATCGTGTATAAATGAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194836.6
CDS GCA 90 bp CTACTATGTCTTCAGTTTTGGGTTCTTGAAGGACATCTGATTTTATaGAGTCTGATGATTTGCAAATGCCATCATCATAGGTTGCATAGA +
Preference number: 5 (lower is better)
Translates to: LLCLQFWVLEGHLIL*SLMICKCHHHRLHR
Trigger: TCTATGCAACCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGATGTCCTTCAAGAACCCAAAACTGAAGACATAGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191633.6
CDS GCA 72 bp CCCGGATTTGTGCAATCAAGTCTTCAACCACGTGCTTaGTCTCTCCAGCAAAAGCCGCTTCCACATAAAGCC +
Preference number: 6 (lower is better)
Translates to: PGFVQSSLQPRA*SLQQKPLPHKA
Trigger: GGCTTTATGTGGAAGCGGCTTTTGCTGGAGAGAGCAAGCACGTGGTTGAAGACTTGATTGCACAAATCCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 72 bp GACGTAGTTAGCACACCGTCTCCATGTTGCAGTTTCTaGTGTAGTCCCATAAAGGGCCTTGCGGAAAGCATT +
Preference number: 6 (lower is better)
Translates to: DVVSTPSPCCSF*CSPIKGLAESI
Trigger: AATGCTTTCCGCAAGGCCCTTTATGGGACTACATCAGAAACTGCAACATGGAGACGGTGTGCTAACTACGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 72 bp TGTCAAAATTACTGTATCGGGAACTGGTCTCGGGAATaGCGTTGCGTTTCAACCAGCCTCCACAAGCATACT +
Preference number: 6 (lower is better)
Translates to: CQNYCIGNWSRE*RCVSTSLHKHT
Trigger: AGTATGCTTGTGGAGGCTGGTTGAAACGCAACGTCATTCCCGAGACCAGTTCCCGATACAGTAATTTTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS GCA 72 bp CCACATATGCTGTGCAAGCCTCTTTATATATTCCAGTaGACTCATAGTAGTCTCTGGAAGGGAGGCCAAGTC +
Preference number: 6 (lower is better)
Translates to: PHMLCKPLYIFQ*THSSLWKGGQV
Trigger: GACTTGGCCTCCCTTCCAGAGACTACTATGAGTGCACTGGAATATATAAAGAGGCTTGCACAGCATATGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS CCA 72 bp GCTGATCTCCAGGGGAGTCCATCGCTGTTTCTTCTTTaGCTTTGGAGCATTGATATCAGTTATATCCATCTG +
Preference number: 6 (lower is better)
Translates to: ADLQGSPSLFLL*LWSIDISYIHL
Trigger: CAGATGGATATAACTGATATCAATGCTCCAAAGCCAAAGAAGAAACAGCGATGGACTCCCCTGGAGATCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000029400.7
ENSMUST00000191633.6
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS CAA 72 bp GATGCTACTGGCCACCCATATATATCTGGTAACAGTTaGAGTAGAGGTTGTCCGCCTCTGCTATCAATAGCA +
Preference number: 6 (lower is better)
Translates to: DATGHPYISGNS*SRGCPPLLSIA
Trigger: TGCTATTGATAGCAGAGGCGGACAACCTCTACTCAAACTGTTACCAGATATATATGGGTGGCCAGTAGCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000191633.6
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194836.6
CDS TCA 72 bp ATGGATTTCTCAGCTGTCCAAGAAGTGCCATATGTTTaGTCCCAGTTATCTGATGCTACTGGCCACCCATAT +
Preference number: 6 (lower is better)
Translates to: MDFSAVQEVPYV*SQLSDATGHPY
Trigger: ATATGGGTGGCCAGTAGCATCAGATAACTGGGATCAAACATATGGCACTTCTTGGACAGCTGAGAAATCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 72 bp TCTCTGGAAGGGAGGCCAAGTCGAGGCTGGTCAAAATaGATTATATGCTGGGTAGAATTCTTATCATCAGTG +
Preference number: 6 (lower is better)
Translates to: SLEGRPSRGWSK*IICWVEFLSSV
Trigger: CACTGATGATAAGAATTCTACCCAGCATATAATTCATTTTGACCAGCCTCGACTTGGCCTCCCTTCCAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS CCA 72 bp CTCCAGGGGAGTCCATCGCTGTTTCTTCTTTGGCTTTaGAGCATTGATATCAGTTATATCCATCTGACTTTC +
Preference number: 6 (lower is better)
Translates to: LQGSPSLFLLWL*SIDISYIHLTF
Trigger: GAAAGTCAGATGGATATAACTGATATCAATGCTCCAAAGCCAAAGAAGAAACAGCGATGGACTCCCCTGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000029400.7
ENSMUST00000191633.6
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS CAA 90 bp AAAATGTCAAAATTACTGTATCGGGAACTGGTCTCGGGAATGACGTaGCGTTTCAACCAGCCTCCACAAGCATACTTGAAGAAGTCTGTA +
Preference number: 6 (lower is better)
Translates to: KMSKLLYRELVSGMT*RFNQPPQAYLKKSV
Trigger: TACAGACTTCTTCAAGTATGCTTGTGGAGGCTGGTTGAAACGCAACGTCATTCCCGAGACCAGTTCCCGATACAGTAATTTTGACATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS CAA 90 bp CAGTTATCTGATGCTACTGGCCACCCATATATATCTGGTAACAGTTaGAGTAGAGGTTGTCCGCCTCTGCTATCAATAGCAGACTCATTT +
Preference number: 6 (lower is better)
Translates to: QLSDATGHPYISGNS*SRGCPPLLSIADSF
Trigger: AAATGAGTCTGCTATTGATAGCAGAGGCGGACAACCTCTACTCAAACTGTTACCAGATATATATGGGTGGCCAGTAGCATCAGATAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000191633.6
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194836.6
CDS CAA 90 bp CATCCAAGTAAGGTCATCCAAAGTCTGAATAAAAACTTCCCGGATTaGTGCAATCAAGTCTTCAACCACGTGCTTGCTCTCTCCAGCAAA +
Preference number: 6 (lower is better)
Translates to: HPSKVIQSLNKNFPD*CNQVFNHVLALSSK
Trigger: TTTGCTGGAGAGAGCAAGCACGTGGTTGAAGACTTGATTGCACAAATCCGGGAAGTTTTTATTCAGACTTTGGATGACCTTACTTGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 72 bp AAGTCTGTACATGGCTCAACAGAGGCATCCATATTCTaGATCAGTCGAGCAGCTGATTTTATGCAGTCTGAT +
Preference number: 6 (lower is better)
Translates to: KSVHGSTEASIF*ISRAADFMQSD
Trigger: ATCAGACTGCATAAAATCAGCTGCTCGACTGATTCAGAATATGGATGCCTCTGTTGAGCCATGTACAGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS GCA 72 bp TCAGTCGAGCAGCTGATTTTATGCAGTCTGATGATTTaGAAATGCCATCATCATAGGTTGCATAGAGAGCGA +
Preference number: 6 (lower is better)
Translates to: SVEQLILCSLMI*KCHHHRLHRER
Trigger: TCGCTCTCTATGCAACCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGCTGCTCGACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000029400.7
ENSMUST00000192002.3
ENSMUST00000194134.6
ENSMUST00000194150.6
ENSMUST00000194324.6
ENSMUST00000194836.6
CDS CAA 72 bp AAGGTCATCCAAAGTCTGAATAAAAACTTCCCGGATTaGTGCAATCAAGTCTTCAACCACGTGCTTGCTCTC +
Preference number: 6 (lower is better)
Translates to: KVIQSLNKNFPD*CNQVFNHVLAL
Trigger: GAGAGCAAGCACGTGGTTGAAGACTTGATTGCACAAATCCGGGAAGTTTTTATTCAGACTTTGGATGACCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 72 bp GAGAGCTGGTTTTCATCAATAGGCAAACTTTGTTCCTaGCGAATCAGTCTGGCCACAGAAATCATAAAATCC +
Preference number: 6 (lower is better)
Translates to: ESWFSSIGKLCS*RISLATEIIKS
Trigger: GGATTTTATGATTTCTGTGGCCAGACTGATTCGTCAGGAACAAAGTTTGCCTATTGATGAAAACCAGCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS TCA 72 bp GTCTCAGCATCCATCCAAGTAAGGTCATCCAAAGTCTaGATAAAAACTTCCCGGATTTGTGCAATCAAGTCT +
Preference number: 6 (lower is better)
Translates to: VSASIQVRSSKV*IKTSRICAIKS
Trigger: AGACTTGATTGCACAAATCCGGGAAGTTTTTATTCAGACTTTGGATGACCTTACTTGGATGGATGCTGAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS CAA 72 bp TTCCAAAGAGAGCTGGTTTTCATCAATAGGCAAACTTaGTTCCTGACGAATCAGTCTGGCCACAGAAATCAT +
Preference number: 6 (lower is better)
Translates to: FQRELVFINRQT*FLTNQSGHRNH
Trigger: ATGATTTCTGTGGCCAGACTGATTCGTCAGGAACAAAGTTTGCCTATTGATGAAAACCAGCTCTCTTTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS GCA 72 bp CTTGAAGGACATCTGATTTTATGCAGTCTGATGATTTaGAAATGCCATCATCATAGGTTGCATAGAGAGCGA +
Preference number: 6 (lower is better)
Translates to: LEGHLILCSLMI*KCHHHRLHRER
Trigger: TCGCTCTCTATGCAACCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGATGTCCTTCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191633.6
CDS CCA 72 bp CAGCTTGGCCAATGTCATTTTGTTATAAAGCAGCATTaGGTCATTTCGGTCTTCTGGTTTAGTTGTAGCATT +
Preference number: 6 (lower is better)
Translates to: QLGQCHFVIKQH*VISVFWFSCSI
Trigger: AATGCTACAACTAAACCAGAAGACCGAAATGACCCAATGCTGCTTTATAACAAAATGACATTGGCCAAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6
CDS GCA 72 bp CTTCAGTTTTGGGTTCTTGAAGGACATCTGATTTTATaGAGTCTGATGATTTGCAAATGCCATCATCATAGG +
Preference number: 6 (lower is better)
Translates to: LQFWVLEGHLIL*SLMICKCHHHR
Trigger: CCTATGATGATGGCATTTGCAAATCATCAGACTGCATAAAATCAGATGTCCTTCAAGAACCCAAAACTGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191633.6
CDS CAA 90 bp TTTATTCATTTCCAAAGAGAGCTGGTTTTCATCAATAGGCAAACTTaGTTCCTGACGAATCAGTCTGGCCACAGAAATCATAAAATCCAC +
Preference number: 6 (lower is better)
Translates to: FIHFQRELVFINRQT*FLTNQSGHRNHKIH
Trigger: GTGGATTTTATGATTTCTGTGGCCAGACTGATTCGTCAGGAACAAAGTTTGCCTATTGATGAAAACCAGCTCTCTTTGGAAATGAATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029400.7
ENSMUST00000194134.6
ENSMUST00000194150.6