Pregenerated sensors for MMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003948Ensembl transcript IDs: ENSMUST00000004050.7, ENSMUST00000107887.8
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCTTTTCCTTCTGACCTCAAACTTACAGCTTTCCCTCTTCAGCTaGGTAGGGACCATACGGTGGGCCACCACAACCTTCAAAGATCCC | + |
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Preference number: 1 (lower is better) Translates to: RLFLLTSNLQLSLFS*VGTIRWATTTFKDP Trigger: GGGATCTTTGAAGGTTGTGGTGGCCCACCGTATGGTCCCTACCCAGCTGAAGAGGGAAAGCTGTAAGTTTGAGGTCAGAAGGAAAAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR GCA 90 bp | GCCAGAAGAGGTATAATGTTTGTTCGTGGAATGTTGACCGTTTGCTaGAAAAACCTCGCATGGATGAGGAGCCAGTGGGGGTGTGCGTCA | + |
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Preference number: 1 (lower is better) Translates to: ARRGIMFVRGMLTVC*KNLAWMRSQWGCAS Trigger: TGACGCACACCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACCTCTTCTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR GCA 90 bp | ACTGCCAGAAGAGGTATAATGTTTGTTCGTGGAATGTTGACCGTTTaGTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGGGTGTGCG | + |
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Preference number: 1 (lower is better) Translates to: TARRGIMFVRGMLTV*CKNLAWMRSQWGCA Trigger: CGCACACCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACCTCTTCTGGCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 90 bp | GTATCAAAACACTACTGTCTTACTCCTGGTGGCCCACACCAGTCATaGATGTCAGCCCAAAGCAGCACTGAGTTCAGGGTTAGAGATTGG | + |
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Preference number: 1 (lower is better) Translates to: VSKHYCLTPGGPHQS*MSAQSSTEFRVRDW Trigger: CCAATCTCTAACCCTGAACTCAGTGCTGCTTTGGGCTGACATCCATGACTGGTGTGGGCCACCAGGAGTAAGACAGTAGTGTTTTGATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 90 bp | ATGTTTGTTCGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATaGATGAGGAGCCAGTGGGGGTGTGCGTCAATGGAATCGTTTCTT | + |
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Preference number: 1 (lower is better) Translates to: MFVRGMLTVCCKNLA*MRSQWGCASMESFL Trigger: AAGAAACGATTCCATTGACGCACACCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTaGGTACTCCTGACTACTGAAGACATCCCCAGCAACCAGTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: LFRIMHIQRCGWCYP*VLLTTEDIPSNQFF Trigger: GAAGAACTGGTTGCTGGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR TCA 90 bp | TATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTaGAGACATCCCCAGCAACCAGTTCTTCAGTTGTTCCTTTACAAT | + |
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Preference number: 1 (lower is better) Translates to: YTAVWLVLSLGTPDY*RHPQQPVLQLFLYN Trigger: ATTGTAAAGGAACAACTGAAGAACTGGTTGCTGGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTGTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 90 bp | GTTAAGTGGCTTAACCACAATGACTTGAACCGTTGGGCACCAAAGTaGCAAATACAATTCGCCATGATTCAGAAAGCTCATGGCAGATGG | + |
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Preference number: 1 (lower is better) Translates to: VKWLNHNDLNRWAPK*QIQFAMIQKAHGRW Trigger: CCATCTGCCATGAGCTTTCTGAATCATGGCGAATTGTATTTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAGCCACTTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR TCA 90 bp | AGTTGGCCAAGTCTCTCCCGAGTCCTTCATGATAGTGGAATGGAATaGAGAATTGATTCACTACCTCATCTGTTGCCTGTGAAGAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: SWPSLSRVLHDSGME*RIDSLPHLLPVKRK Trigger: TTTCCTCTTCACAGGCAACAGATGAGGTAGTGAATCAATTCTTCATTCCATTCCACTATCATGAAGGACTCGGGAGAGACTTGGCCAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR TCA 90 bp | CAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTGAAGACATCCCCAAAACCTCGCATGGATaGGGAGCCAGTGGGGGTGTG | + |
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Preference number: 2 (lower is better) Translates to: QRCGWCYPWVLLTTEDIPKTSHG*GASGGV Trigger: CACACCCCCACTGGCTCCTCATCCATGCGAGGTTTT...GGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR GCA 90 bp | CGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGCACTCTTCTTCTGTGTaGGACATTCAGTTCTCCCCC | + |
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Preference number: 2 (lower is better) Translates to: RGMLTVCCKNLAWMRSQWHSSSV*DIQFSP Trigger: GGGGGAGAACTGAATGTCGCACACAGAAGAAGAGTG...CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR CCA 90 bp | CAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTGAAGACATCCCCTTTGTAAACATCAGTTaGCCAAGTCTCTCCCGAGTC | + |
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Preference number: 2 (lower is better) Translates to: QRCGWCYPWVLLTTEDIPFVNIS*PSLSRV Trigger: GACTCGGGAGAGACTTGGCCAACTGATGTTTACAAA...GGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CAA 90 bp | AACTGCCAGAAGAGGTATAATGTTTGTTCGTGGAATGTTGACCGTTaGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGGGTGTGC | + |
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Preference number: 2 (lower is better) Translates to: NCQKRYNVCSWNVDR*LQKPRMDEEPVGVC Trigger: GCACACCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACCTCTTCTGGCAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR TCA 90 bp | CAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTGAAGACATCCCCGTGATAATACTGATTTaGAAACCTAGCACAGACTGG | + |
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Preference number: 2 (lower is better) Translates to: QRCGWCYPWVLLTTEDIPVIILI*KPSTDW Trigger: CCAGTCTGTGCTAGGTTTTCAAATCAGTATTATCAC...GGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR GCA 90 bp | ACTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTGAGCCAGTGGGGGTGTaGGTCAATGGAATCGTTTCT | + |
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Preference number: 2 (lower is better) Translates to: TVQNHAYTAVWLVLSLGTEPVGV*VNGIVS Trigger: AGAAACGATTCCATTGACGCACACCCCCACTGGCTC...AGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR GCA 90 bp | CGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGTTAAAACGAAGTCAGTaGAAGTTTGCTCACTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: RGMLTVCCKNLAWMRSQWLKRSQ*KFAHSS Trigger: AGAAGAGTGAGCAAACTTGCACTGACTTCGTTTTAA...CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR CCA 90 bp | CAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTGAAGACATCCCCTGTCTTCTGAAAAAGTaGATGGTATCAAAACACTAC | + |
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Preference number: 2 (lower is better) Translates to: QRCGWCYPWVLLTTEDIPCLLKK*MVSKHY Trigger: GTAGTGTTTTGATACCATCCACTTTTTCAGAAGACA...GGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR TCA 90 bp | GTCTCTCCCGAGTCCTTCATGATAGTGGAATGGAATGAAGAATTGATTCACTACCTCATCTGTTGCCTGTaGAGAGGAAAACTCCGAGAC | + |
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Preference number: 2 (lower is better) Translates to: VSPESFMIVEWNEELIHYLICCL*RGKLRD Trigger: GTCTCGGAGTTTTCCTCTTCACAGGCAACAGATGAG...GTAGTGAATCAATTCTTCATTCCATTCCACTATCATGAAGGACTCGGGAGAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR TCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCGAAAAGGCAGAAATGTaGGTTTATGTGTCTAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLEKAEM*VYVSSP Trigger: GGGACTAGACACATAAACTCACATTTCTGCCTTTTC...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR GCA 90 bp | CGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGAAGTTGTATTACTATTaGACTGACTTTGACAACCTG | + |
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Preference number: 2 (lower is better) Translates to: RGMLTVCCKNLAWMRSQWKLYYY*TDFDNL Trigger: CAGGTTGTCAAAGTCAGTGCAATAGTAATACAACTT...CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CAA 90 bp | CTTAATAAAACTGCCAGAAGAGGTATAATGTTTGTTCGTGGAATGTaGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: LNKTARRGIMFVRGM*TVCCKNLAWMRSQW Trigger: CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACCTCTTCTGGCAGTTTTATTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR CCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCGGGGGTGTGCGTCAATaGAATCGTTTCTTTAAAAAT | + |
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Preference number: 2 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLGGVRQ*NRFFKN Trigger: ATTTTTAAAGAAACGATTCCATTGACGCACACCCCC...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CAA 90 bp | AGTACAGAACAAACCCACCCAATATATACACAGCGTTGCCAAGCCTaGGGGATAGCTAGTGTAACTCATATGGTTCTCTCTCAAGTCTAT | + |
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Preference number: 2 (lower is better) Translates to: STEQTHPIYTQRCQA*GIASVTHMVLSQVY Trigger: ATAGACTTGAGAGAGAACCATATGAGTTACACTAGCTATCCCCAAGGCTTGGCAACGCTGTGTATATATTGGGTGGGTTTGTTCTGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTGATTCTTTTACACAGTaGACGGGAAACGTGATAGAA | + |
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Preference number: 2 (lower is better) Translates to: TVQNHAYTAVWLVLSLGTDSFTQ*TGNVIE Trigger: TTCTATCACGTTTCCCGTTCACTGTGTAAAAGAATC...AGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CAA 90 bp | ATATCAAACTCATACAATAAAGTTAAGTGGCTTAACCACAATGACTaGAACCGTTGGGCACCAAAGTGGCAAATACAATTCGCCATGATT | + |
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Preference number: 2 (lower is better) Translates to: ISNSYNKVKWLNHND*NRWAPKWQIQFAMI Trigger: AATCATGGCGAATTGTATTTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAGCCACTTAACTTTATTGTATGAGTTTGATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 72 bp | CACTACTGTCTTACTCCTGGTGGCCCACACCAGTCATaGATGTCAGCCCAAAGCAGCACTGAGTTCAGGGTT | + |
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Preference number: 3 (lower is better) Translates to: HYCLTPGGPHQS*MSAQSSTEFRV Trigger: AACCCTGAACTCAGTGCTGCTTTGGGCTGACATCCATGACTGGTGTGGGCCACCAGGAGTAAGACAGTAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR CAA 90 bp | GGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGGGTCACTACCTCATCTGTaGCCTGTGAAGAGGAAAACT | + |
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Preference number: 3 (lower is better) Translates to: GMLTVCCKNLAWMRSQWGSLPHL*PVKRKT Trigger: AGTTTTCCTCTTCACAGGCAACAGATGAGGTAGTGA...CCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR CAA 90 bp | CGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGTTTGTAAACATCAGTaGGCCAAGTCTCTCCCGAGT | + |
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Preference number: 3 (lower is better) Translates to: RGMLTVCCKNLAWMRSQWVCKHQ*AKSLPS Trigger: ACTCGGGAGAGACTTGGCCAACTGATGTTTACAAAC...CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR TCA 72 bp | AGCACGAAGCTGGGGCAAATGCTAGGCTTTTCCTTCTaGCCTCAAACTTACAGCTTTCCCTCTTCAGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: STKLGQMLGFSF*PQTYSFPSSAG Trigger: CCCAGCTGAAGAGGGAAAGCTGTAAGTTTGAGGTCAGAAGGAAAAGCCTAGCATTTGCCCCAGCTTCGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR CCA 72 bp | AGTGCCGAACACAAGACATCGGAGGAAGTAAGCCAGTaGCCAGCAGAGCTGGATGAGACTGCAATGTATAGT | + |
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Preference number: 3 (lower is better) Translates to: SAEHKTSEEVSQ*PAELDETAMYS Trigger: ACTATACATTGCAGTCTCATCCAGCTCTGCTGGCCACTGGCTTACTTCCTCCGATGTCTTGTGTTCGGCACT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR TCA 72 bp | GTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTaGAGACATCCCCAGCAACCAGTTCTTCAGTTGTTC | + |
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Preference number: 3 (lower is better) Translates to: VWLVLSLGTPDY*RHPQQPVLQLF Trigger: GAACAACTGAAGAACTGGTTGCTGGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR GCA 72 bp | GGTATAATGTTTGTTCGTGGAATGTTGACCGTTTGCTaGAAAAACCTCGCATGGATGAGGAGCCAGTGGGGG | + |
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Preference number: 3 (lower is better) Translates to: GIMFVRGMLTVC*KNLAWMRSQWG Trigger: CCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR TCA 72 bp | ACCGTTGGGCACCAAAGTGGCAAATACAATTCGCCATaGTTCAGAAAGCTCATGGCAGATGGGCAACCCAAT | + |
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Preference number: 3 (lower is better) Translates to: TVGHQSGKYNSP*FRKLMADGQPN Trigger: ATTGGGTTGCCCATCTGCCATGAGCTTTCTGAATCATGGCGAATTGTATTTGCCACTTTGGTGCCCAACGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR GCA 72 bp | TGCAGTTCTTTAATTAGTACAGTGGCTAACGGCCAGTaGCGAACACAAGACATCGGAGGAAGTAAGCCAGTG | + |
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Preference number: 3 (lower is better) Translates to: CSSLISTVANGQ*RTQDIGGSKPV Trigger: CACTGGCTTACTTCCTCCGATGTCTTGTGTTCGGCACTGGCCGTTAGCCACTGTACTAATTAAAGAACTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR-3UTR CAA 90 bp | GATTCACTACCTCATCTGTTGCCTGTGAAGAGGAAAACTCCGAGACACAGCTTTGAAGTCAGTGCAAGTTaGCTCACTCTTCTTCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: DSLPHLLPVKRKTPRHSFEVSAS*LTLLLC Trigger: ACACAGAAGAAGAGTGAGCAAACTTGCACTGACTTC...AAAGCTGTGTCTCGGAGTTTTCCTCTTCACAGGCAACAGATGAGGTAGTGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR TCA 72 bp | AGTCTCTCCCGAGTCCTTCATGATAGTGGAATGGAATaGAGAATTGATTCACTACCTCATCTGTTGCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: SLSRVLHDSGME*RIDSLPHLLPV Trigger: CACAGGCAACAGATGAGGTAGTGAATCAATTCTTCATTCCATTCCACTATCATGAAGGACTCGGGAGAGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 72 bp | CTTAACCACAATGACTTGAACCGTTGGGCACCAAAGTaGCAAATACAATTCGCCATGATTCAGAAAGCTCAT | + |
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Preference number: 3 (lower is better) Translates to: LNHNDLNRWAPK*QIQFAMIQKAH Trigger: ATGAGCTTTCTGAATCATGGCGAATTGTATTTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR-3UTR CAA 90 bp | CAACTGACACAAGCTTCAACCTGCCAATCAATGTTTTATTTATGGCGTGAGAAATGGAATGTTGACCGTTaGCTGCAAAAACCTCGCATG | + |
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Preference number: 3 (lower is better) Translates to: QLTQASTCQSMFYLWREKWNVDR*LQKPRM Trigger: CATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCA...TTTCTCACGCCATAAATAAAACATTGATTGGCAGGTTGAAGCTTGTGTCAGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 72 bp | AAAGTTAAGTGGCTTAACCACAATGACTTGAACCGTTaGGCACCAAAGTGGCAAATACAATTCGCCATGATT | + |
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Preference number: 3 (lower is better) Translates to: KVKWLNHNDLNR*APKWQIQFAMI Trigger: AATCATGGCGAATTGTATTTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAGCCACTTAACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR TCA 72 bp | TCACTCCACAGAGTCAGCATAAAACCCATCAACAACTaGCACAAGCTTCAACCTGCCAATCAATGTTTTATT | + |
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Preference number: 3 (lower is better) Translates to: SLHRVSIKPINN*HKLQPANQCFI Trigger: AATAAAACATTGATTGGCAGGTTGAAGCTTGTGTCAGTTGTTGATGGGTTTTATGCTGACTCTGTGGAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CCA 72 bp | CAAAGGCATGTAGCGAAGTTATGTCTTCTGAAAAAGTaGATGGTATCAAAACACTACTGTCTTACTCCTGGT | + |
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Preference number: 3 (lower is better) Translates to: QRHVAKLCLLKK*MVSKHYCLTPG Trigger: ACCAGGAGTAAGACAGTAGTGTTTTGATACCATCCACTTTTTCAGAAGACATAACTTCGCTACATGCCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR GCA 72 bp | TCCCTCGAATTCTTAAGATTTTATGTCAGTCATTCATaGTCTCTTTACCATAACAGAACTCCAAATAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: SLEFLRFYVSHS*SLYHNRTPNSL Trigger: GAGGCTATTTGGAGTTCTGTTATGGTAAAGAGAGCATGAATGACTGACATAAAATCTTAAGAATTCGAGGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR TCA 72 bp | AAAGTAGTGTTCAGTTTCCATGATTCTTTTACACAGTaGACGGGAAACGTGATAGAAACAACTTTGGGTTTT | + |
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Preference number: 3 (lower is better) Translates to: KVVFSFHDSFTQ*TGNVIETTLGF Trigger: AAAACCCAAAGTTGTTTCTATCACGTTTCCCGTTCACTGTGTAAAAGAATCATGGAAACTGAACACTACTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | CAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTGAAGACATCCCCAGGTGCCAGATGGCATaGGCGAACGGAATGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: QRCGWCYPWVLLTTEDIPRCQMA*ANGMMP Trigger: TGGCATCATTCCGTTCGCCCATGCCATCTGGCACCT...GGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | CGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGTAGCGGCCATTAGCTaGGGCCCGATGGTTCATGAA | + |
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Preference number: 4 (lower is better) Translates to: RGMLTVCCKNLAWMRSQWVAAIS*GPMVHE Trigger: TTCATGAACCATCGGGCCCCAGCTAATGGCCGCTAC...CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | CAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCTGACTACTGAAGACATCCCCTTAGCTGGGGCCCGATaGTTCATGAAACGCTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: QRCGWCYPWVLLTTEDIPLAGAR*FMKRWN Trigger: ATTCCAGCGTTTCATGAACCATCGGGCCCCAGCTAA...GGGGATGTCTTCAGTAGTCAGGAGTACCCAAGGATAACACCAGCCACACCGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR TCA 90 bp | ACACAGCGTTGCCAAGCCTTGGGGATAGCTAGTGTAACTCATATGGTTCTCTCTGCCACGTCTCACCATTaGTGTCACCACCAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TQRCQALGIASVTHMVLSATSHH*CHHQGW Trigger: CCAGCCTTGGTGGTGACATCAATGGTGAGACGTGGC...AGAGAGAACCATATGAGTTACACTAGCTATCCCCAAGGCTTGGCAACGCTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR TCA 90 bp | CGTGGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGATAAACCAACGCATATaGGATGCCAGGGGTCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: RGMLTVCCKNLAWMRSQWINQRI*DARGPS Trigger: ACTTGGACCCCTGGCATCTCATATGCGTTGGTTTAT...CCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR GCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCCAACGCATATGAGATaGCAGGGGTCCAAGTTCACG | + |
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Preference number: 4 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLPTHMR*QGSKFT Trigger: CGTGAACTTGGACCCCTGGCATCTCATATGCGTTGG...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR GCA 90 bp | AAAGTTAAGTGGCTTAACCACAATGACTTGAACCGTTGGGCACCAAAGTGGCAAGTAGTGTACGGCAGCTaGCGTGGCCACAAACAGGTG | + |
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Preference number: 4 (lower is better) Translates to: KVKWLNHNDLNRWAPKWQVVYGS*RGHKQV Trigger: CACCTGTTTGTGGCCACGGCAGCTGCCGTACACTAC...TTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAGCCACTTAACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | ACACAGCGTTGCCAAGCCTTGGGGATAGCTAGTGTAACTCATATGGTTCTCTCTTTAGCTGGGGCCCGATaGTTCATGAAACGCTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: TQRCQALGIASVTHMVLSLAGAR*FMKRWN Trigger: ATTCCAGCGTTTCATGAACCATCGGGCCCCAGCTAA...AGAGAGAACCATATGAGTTACACTAGCTATCCCCAAGGCTTGGCAACGCTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR CCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCGTGTGTGTAGCAATTaGCAGCATGTTCGTAGCACG | + |
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Preference number: 4 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLRVCSN*QHVRST Trigger: CGTGCTACGAACATGCTGCCAATTGCTACACACACG...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | ACACAGCGTTGCCAAGCCTTGGGGATAGCTAGTGTAACTCATATGGTTCTCTCTTGTCACCACCAAGGCTaGAGAAAATCCCATCGTGAG | + |
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Preference number: 4 (lower is better) Translates to: TQRCQALGIASVTHMVLSCHHQG*RKSHRE Trigger: CTCACGATGGGATTTTCTCCAGCCTTGGTGGTGACA...AGAGAGAACCATATGAGTTACACTAGCTATCCCCAAGGCTTGGCAACGCTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR GCA 90 bp | ACACAGCGTTGCCAAGCCTTGGGGATAGCTAGTGTAACTCATATGGTTCTCTCTAATGGTTCCTCCAGCTaGCATGAGCCAGATAAACCA | + |
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Preference number: 4 (lower is better) Translates to: TQRCQALGIASVTHMVLSNGSSS*HEPDKP Trigger: TGGTTTATCTGGCTCATGGCAGCTGGAGGAACCATT...AGAGAGAACCATATGAGTTACACTAGCTATCCCCAAGGCTTGGCAACGCTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR CCA 90 bp | ACTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTTGTCACCACCAAGGCTaGAGAAAATCCCATCGTGAG | + |
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Preference number: 4 (lower is better) Translates to: TVQNHAYTAVWLVLSLGTCHHQG*RKSHRE Trigger: CTCACGATGGGATTTTCTCCAGCCTTGGTGGTGACA...AGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | CAACTGACACAAGCTTCAACCTGCCAATCAATGTTTTATTTATGGCGTGAGAAAGTACGGCAGCTGCCGTaGCCACAAACAGGTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: QLTQASTCQSMFYLWREKVRQLP*PQTGAR Trigger: TCTGGCACCTGTTTGTGGCCACGGCAGCTGCCGTAC...TTTCTCACGCCATAAATAAAACATTGATTGGCAGGTTGAAGCTTGTGTCAGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR GCA 90 bp | GATTCACTACCTCATCTGTTGCCTGTGAAGAGGAAAACTCCGAGACACAGCTTTCGGAACAATGAGGAATaGGTGTGTGTAGCAATTGGC | + |
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Preference number: 4 (lower is better) Translates to: DSLPHLLPVKRKTPRHSFRNNEE*VCVAIG Trigger: GCCAATTGCTACACACACGCATTCCTCATTGTTCCG...AAAGCTGTGTCTCGGAGTTTTCCTCTTCACAGGCAACAGATGAGGTAGTGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR GCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCCACATGTGGAAACAATaGTCCACTGTTCTCAAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLHMWKQ*STVLKW Trigger: CCACTTGAGAACAGTGGAGCATTGTTTCCACATGTG...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | GATTCACTACCTCATCTGTTGCCTGTGAAGAGGAAAACTCCGAGACACAGCTTTATGTTCGTAGCACGTTaGTTTGTAGCGGCCATTAGC | + |
|
Preference number: 4 (lower is better) Translates to: DSLPHLLPVKRKTPRHSFMFVAR*FVAAIS Trigger: GCTAATGGCCGCTACAAACCAACGTGCTACGAACAT...AAAGCTGTGTCTCGGAGTTTTCCTCTTCACAGGCAACAGATGAGGTAGTGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR TCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCGTGGCTCTTCTTCCATaGTACTATGTGAAACACTGT | + |
|
Preference number: 4 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLVALLP*YYVKHC Trigger: ACAGTGTTTCACATAGTATCATGGAAGAAGAGCCAC...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR TCA 90 bp | AAAGTTAAGTGGCTTAACCACAATGACTTGAACCGTTGGGCACCAAAGTGGCAAGTCAGTGTTATTCATTaGTGTCACCACCAAGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: KVKWLNHNDLNRWAPKWQVSVIH*CHHQGW Trigger: CCAGCCTTGGTGGTGACATCAATGAATAACACTGAC...TTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAGCCACTTAACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR GCA 90 bp | AAAGTTAAGTGGCTTAACCACAATGACTTGAACCGTTGGGCACCAAAGTGGCAAAATGGTTCCTCCAGCTaGCATGAGCCAGATAAACCA | + |
|
Preference number: 4 (lower is better) Translates to: KVKWLNHNDLNRWAPKWQNGSSS*HEPDKP Trigger: TGGTTTATCTGGCTCATGGCAGCTGGAGGAACCATT...TTGCCACTTTGGTGCCCAACGGTTCAAGTCATTGTGGTTAAGCCACTTAACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | AAAGTGACAGGTGTCTATGGTTTTCTACATGGTAATTCCACTGGAAAGAGAACTGTAGCGGCCATTAGCTaGGGCCCGATGGTTCATGAA | + |
|
Preference number: 4 (lower is better) Translates to: KVTGVYGFLHGNSTGKRTVAAIS*GPMVHE Trigger: TTCATGAACCATCGGGCCCCAGCTAATGGCCGCTAC...AGTTCTCTTTCCAGTGGAATTACCATGTAGAAAACCATAGACACCTGTCACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR CCA 90 bp | TTAATTAGTACAGTGGCTAACGGCCAGTGCCGAACACAAGACATCGGAGGAAGTTCCACTGTTCTCAAGTaGCTCTTCTTCCATGATACT | + |
|
Preference number: 4 (lower is better) Translates to: LISTVANGQCRTQDIGGSSTVLK*LFFHDT Trigger: AGTATCATGGAAGAAGAGCCACTTGAGAACAGTGGA...ACTTCCTCCGATGTCTTGTGTTCGGCACTGGCCGTTAGCCACTGTACTAATTAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| 3UTR CAA 72 bp | AAGAGGTATAATGTTTGTTCGTGGAATGTTGACCGTTaGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: KRYNVCSWNVDR*LQKPRMDEEPV Trigger: CACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACCTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CAA 72 bp | ACTGCCAGAAGAGGTATAATGTTTGTTCGTGGAATGTaGACCGTTTGCTGCAAAAACCTCGCATGGATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TARRGIMFVRGM*TVCCKNLAWMR Trigger: CCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCCACGAACAAACATTATACCTCTTCTGGCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| 3UTR CAA 72 bp | CAAACCCACCCAATATATACACAGCGTTGCCAAGCCTaGGGGATAGCTAGTGTAACTCATATGGTTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QTHPIYTQRCQA*GIASVTHMVLS Trigger: AGAGAGAACCATATGAGTTACACTAGCTATCCCCAAGGCTTGGCAACGCTGTGTATATATTGGGTGGGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR TCA 90 bp | CTGTTCAGAATCATGCATATACAGCGGTGTGGCTGGTGTTATCCTTGGGTACTCTTCCATGATACTATGTaGAACACTGTGGAGACTATG | + |
|
Preference number: 4 (lower is better) Translates to: LFRIMHIQRCGWCYPWVLFHDTM*NTVETM Trigger: CATAGTCTCCACAGTGTTTCACATAGTATCATGGAA...GAGTACCCAAGGATAACACCAGCCACACCGCTGTATATGCATGATTCTGAACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | AAAGTGACAGGTGTCTATGGTTTTCTACATGGTAATTCCACTGGAAAGAGAACTCGTGTGTGTAGCAATTaGCAGCATGTTCGTAGCACG | + |
|
Preference number: 4 (lower is better) Translates to: KVTGVYGFLHGNSTGKRTRVCSN*QHVRST Trigger: CGTGCTACGAACATGCTGCCAATTGCTACACACACG...AGTTCTCTTTCCAGTGGAATTACCATGTAGAAAACCATAGACACCTGTCACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR GCA 90 bp | GGATATATCAAAGCTCCAAAAGGGAAAACTGCACATTTCTCATTACATCAGAGTCGGAACAATGAGGAATaGGTGTGTGTAGCAATTGGC | + |
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Preference number: 4 (lower is better) Translates to: GYIKAPKGKTAHFSLHQSRNNEE*VCVAIG Trigger: GCCAATTGCTACACACACGCATTCCTCATTGTTCCG...ACTCTGATGTAATGAGAAATGTGCAGTTTTCCCTTTTGGAGCTTTGATATATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR CCA 90 bp | CAACTGACACAAGCTTCAACCTGCCAATCAATGTTTTATTTATGGCGTGAGAAAATCCGATCGCACATGTaGAAACAATGCTCCACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: QLTQASTCQSMFYLWREKIRSHM*KQCSTV Trigger: AACAGTGGAGCATTGTTTCCACATGTGCGATCGGAT...TTTCTCACGCCATAAATAAAACATTGATTGGCAGGTTGAAGCTTGTGTCAGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR GCA 90 bp | GGATATATCAAAGCTCCAAAAGGGAAAACTGCACATTTCTCATTACATCAGAGTCACATGTGGAAACAATaGTCCACTGTTCTCAAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GYIKAPKGKTAHFSLHQSHMWKQ*STVLKW Trigger: CCACTTGAGAACAGTGGAGCATTGTTTCCACATGTG...ACTCTGATGTAATGAGAAATGTGCAGTTTTCCCTTTTGGAGCTTTGATATATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR CCA 90 bp | CAACTGACACAAGCTTCAACCTGCCAATCAATGTTTTATTTATGGCGTGAGAAATCCACTGTTCTCAAGTaGCTCTTCTTCCATGATACT | + |
|
Preference number: 4 (lower is better) Translates to: QLTQASTCQSMFYLWREKSTVLK*LFFHDT Trigger: AGTATCATGGAAGAAGAGCCACTTGAGAACAGTGGA...TTTCTCACGCCATAAATAAAACATTGATTGGCAGGTTGAAGCTTGTGTCAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CCA 90 bp | GGATATATCAAAGCTCCAAAAGGGAAAACTGCACATTTCTCATTACATCAGAGTATCCGATCGCACATGTaGAAACAATGCTCCACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: GYIKAPKGKTAHFSLHQSIRSHM*KQCSTV Trigger: AACAGTGGAGCATTGTTTCCACATGTGCGATCGGAT...ACTCTGATGTAATGAGAAATGTGCAGTTTTCCCTTTTGGAGCTTTGATATATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR CCA 90 bp | CAACTGACACAAGCTTCAACCTGCCAATCAATGTTTTATTTATGGCGTGAGAAAACAGGTATTTCCAAATaGCATAGTAGTGTACGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QLTQASTCQSMFYLWREKTGISK*HSSVRQ Trigger: CTGCCGTACACTACTATGCCATTTGGAAATACCTGT...TTTCTCACGCCATAAATAAAACATTGATTGGCAGGTTGAAGCTTGTGTCAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR TCA 90 bp | AACCTTCAAAGATCCCTCGAATTCTTAAGATTTTATGTCAGTCATTCATGCTCTGTGGCTCTTCTTCCATaGTACTATGTGAAACACTGT | + |
|
Preference number: 4 (lower is better) Translates to: NLQRSLEFLRFYVSHSCSVALLP*YYVKHC Trigger: ACAGTGTTTCACATAGTATCATGGAAGAAGAGCCAC...AGAGCATGAATGACTGACATAAAATCTTAAGAATTCGAGGGATCTTTGAAGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS-3UTR TCA 90 bp | AACCTTCAAAGATCCCTCGAATTCTTAAGATTTTATGTCAGTCATTCATGCTCTTTCCATGATACTATGTaGAACACTGTGGAGACTATG | + |
|
Preference number: 4 (lower is better) Translates to: NLQRSLEFLRFYVSHSCSFHDTM*NTVETM Trigger: CATAGTCTCCACAGTGTTTCACATAGTATCATGGAA...AGAGCATGAATGACTGACATAAAATCTTAAGAATTCGAGGGATCTTTGAAGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS CCA 90 bp | ATTGGCAGCATGTTCGTAGCACGTTGGTTTGTAGCGGCCATTAGCTaGGGCCCGATGGTTCATGAAACGCTGGAATCGATTCCTGAACCG | + |
|
Preference number: 5 (lower is better) Translates to: IGSMFVARWFVAAIS*GPMVHETLESIPEP Trigger: CGGTTCAGGAATCGATTCCAGCGTTTCATGAACCATCGGGCCCCAGCTAATGGCCGCTACAAACCAACGTGCTACGAACATGCTGCCAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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| CDS CCA 90 bp | GAGGAATGCGTGTGTGTAGCAATTGGCAGCATGTTCGTAGCACGTTaGTTTGTAGCGGCCATTAGCTGGGGCCCGATGGTTCATGAAACG | + |
|
Preference number: 5 (lower is better) Translates to: EECVCVAIGSMFVAR*FVAAISWGPMVHET Trigger: CGTTTCATGAACCATCGGGCCCCAGCTAATGGCCGCTACAAACCAACGTGCTACGAACATGCTGCCAATTGCTACACACACGCATTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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| CDS-3UTR CAA 90 bp | GGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGGGCGTCAGTGTTATTCATaGATGTCACCACCAAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: GMLTVCCKNLAWMRSQWGRQCYS*MSPPRL Trigger: CAGCCTTGGTGGTGACATCAATGAATAACACTGACG...CCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CAA 90 bp | GGAATGTTGACCGTTTGCTGCAAAAACCTCGCATGGATGAGGAGCCAGTGGGGGATGATGCCATCGCTCTaGAAGAACACAACTCCCAAG | + |
|
Preference number: 5 (lower is better) Translates to: GMLTVCCKNLAWMRSQWGMMPSL*KNTTPK Trigger: CTTGGGAGTTGTGTTCTTCAAGAGCGATGGCATCAT...CCCCCACTGGCTCCTCATCCATGCGAGGTTTTTGCAGCAAACGGTCAACATTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004050.7 |
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| CDS-3UTR CAA 90 bp | AGGCTTTTCCTTCTGACCTCAAACTTACAGCTTTCCCTCTTCAGCTGGGTAGGGAGCCACGTCTCACCATaGATGTCACCACCAAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: RLFLLTSNLQLSLFSWVGSHVSP*MSPPRL Trigger: CAGCCTTGGTGGTGACATCAATGGTGAGACGTGGCT...CCCTACCCAGCTGAAGAGGGAAAGCTGTAAGTTTGAGGTCAGAAGGAAAAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107887.8 |
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| CDS GCA 90 bp | TTTATACTTTTCATGGTAGAGAAATACATAAATGGTTCCTCCAGCTaGCATGAGCCAGATAAACCAACGCATATGAGATGCCAGGGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: FILFMVEKYINGSSS*HEPDKPTHMRCQGS Trigger: GGACCCCTGGCATCTCATATGCGTTGGTTTATCTGGCTCATGGCAGCTGGAGGAACCATTTATGTATTTCTCTACCATGAAAAGTATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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| CDS CCA 72 bp | GCTGTTATCTTCTCCCAGCAGTCATCAGACAGCCGATaGAGGAGGGCACTGCCCACAATGGCCGGAACAATG | + |
|
Preference number: 6 (lower is better) Translates to: AVIFSQQSSDSR*RRALPTMAGTM Trigger: CATTGTTCCGGCCATTGTGGGCAGTGCCCTCCTCCATCGGCTGTCTGATGACTGCTGGGAGAAGATAACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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| CDS CCA 72 bp | GTGTGTGTAGCAATTGGCAGCATGTTCGTAGCACGTTaGTTTGTAGCGGCCATTAGCTGGGGCCCGATGGTT | + |
|
Preference number: 6 (lower is better) Translates to: VCVAIGSMFVAR*FVAAISWGPMV Trigger: AACCATCGGGCCCCAGCTAATGGCCGCTACAAACCAACGTGCTACGAACATGCTGCCAATTGCTACACACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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| CDS TCA 72 bp | CCTCCAGCTGCCATGAGCCAGATAAACCAACGCATATaGGATGCCAGGGGTCCAAGTTCACGGAGATTTAAC | + |
|
Preference number: 6 (lower is better) Translates to: PPAAMSQINQRI*DARGPSSRRFN Trigger: GTTAAATCTCCGTGAACTTGGACCCCTGGCATCTCATATGCGTTGGTTTATCTGGCTCATGGCAGCTGGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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| CDS CCA 72 bp | ATGTTCGTAGCACGTTGGTTTGTAGCGGCCATTAGCTaGGGCCCGATGGTTCATGAAACGCTGGAATCGATT | + |
|
Preference number: 6 (lower is better) Translates to: MFVARWFVAAIS*GPMVHETLESI Trigger: AATCGATTCCAGCGTTTCATGAACCATCGGGCCCCAGCTAATGGCCGCTACAAACCAACGTGCTACGAACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004050.7 ENSMUST00000107887.8 |
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