Pregenerated sensors for MMACHC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028690Ensembl transcript IDs: ENSMUST00000030453.5
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCAGCACTCTGGAGAAGACAGAGGCAGATGGATCTCTCTTAGCTTaGGGCCAACCTGGTCTGAGCTACATAGAGGAACCTTGTCTCAAA | + |
|
Preference number: 1 (lower is better) Translates to: ISTLEKTEADGSLLA*GQPGLSYIEEPCLK Trigger: TTTGAGACAAGGTTCCTCTATGTAGCTCAGACCAGGTTGGCCTCAAGCTAAGAGAGATCCATCTGCCTCTGTCTTCTCCAGAGTGCTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR TCA 90 bp | ACAGCACATTACAATTTACCAACTAACCTCCCTGGACCCTGGGAGTaGAATTTGAAATATCAGAATTGGGAAACTATCTCTGGAATCAAC | + |
|
Preference number: 1 (lower is better) Translates to: TAHYNLPTNLPGPWE*NLKYQNWETISGIN Trigger: GTTGATTCCAGAGATAGTTTCCCAATTCTGATATTTCAAATTTCACTCCCAGGGTCCAGGGAGGTTAGTTGGTAAATTGTAATGTGCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR TCA 90 bp | CTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGGATATaGTTGTATTCAACTACTTGTATTTTAGCTGTGATGAGAGAATAT | + |
|
Preference number: 1 (lower is better) Translates to: LWNQQTGKQSWWLWI*LYSTTCILAVMREY Trigger: ATATTCTCTCATCACAGCTAAAATACAAGTAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR CCA 90 bp | CACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCAACGAAGACAGAGGCAGATaGATCTCTCTTAGCTTGAGG | + |
|
Preference number: 2 (lower is better) Translates to: HSGGRGRWISEFEASLVNEDRGR*ISLSLR Trigger: CCTCAAGCTAAGAGAGATCCATCTGCCTCTGTCTTC...GTTGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 90 bp | AATCAGCACTCTGGAGAAGACAGAGGCAGATGGATCTCTCTTAGCTaGAGGCCAACCTGGTCTGAGCTACATAGAGGAACCTTGTCTCAA | + |
|
Preference number: 2 (lower is better) Translates to: NQHSGEDRGRWISLS*RPTWSELHRGTLSQ Trigger: TTGAGACAAGGTTCCTCTATGTAGCTCAGACCAGGTTGGCCTCAAGCTAAGAGAGATCCATCTGCCTCTGTCTTCTCCAGAGTGCTGATT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR TCA 90 bp | ATCAGAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCCCCCAGGGGTTGTTaGACAACCCTTTCACTGGAT | + |
|
Preference number: 2 (lower is better) Translates to: IRIGKLSLESTNRQTKLVAPRGC*TTLSLD Trigger: ATCCAGTGAAAGGGTTGTTCAACAACCCCTGGGGGC...CACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTCTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR TCA 90 bp | GAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTTTGAAGTCAACTGCTaGTTTTTGAGTCTGCCTTGG | + |
|
Preference number: 2 (lower is better) Translates to: ELGNYLWNQQTGKQSWWLFEVNC*FLSLPW Trigger: CCAAGGCAGACTCAAAAATCAGCAGTTGACTTCAAA...AAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR TCA 90 bp | ATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGGATATGATTGTATTCAACTAGAGAATATTCCTTTCTaGTCCTGTAAAGTCAGGAAG | + |
|
Preference number: 2 (lower is better) Translates to: INKQANKVGGFGYDCIQLENIPF*SCKVRK Trigger: CTTCCTGACTTTACAGGATCAGAAAGGAATATTCTC...TAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTGAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 90 bp | AGGCAAACAAAGTTGGTGGCTTTGGATATGATTGTATTCAACTACTaGTATTTTAGCTGTGATGAGAGAATATTCCTTTCTGATCCTGTA | + |
|
Preference number: 2 (lower is better) Translates to: RQTKLVALDMIVFNY*YFSCDERIFLSDPV Trigger: TACAGGATCAGAAAGGAATATTCTCTCATCACAGCTAAAATACAAGTAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR TCA 90 bp | ATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGGATATGATTGTATTCAACTATTTAGGAACGAACAGTaGGAACCATGGTTCTTAAAT | + |
|
Preference number: 2 (lower is better) Translates to: INKQANKVGGFGYDCIQLFRNEQ*EPWFLN Trigger: ATTTAAGAACCATGGTTCTCACTGTTCGTTCCTAAA...TAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR CAA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCATGGATCTCTCTTAGCTaGAGGCCAACCTGGTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: YTKPGLVVHAFNPSTREAWISLS*RPTWSE Trigger: CTCAGACCAGGTTGGCCTCAAGCTAAGAGAGATCCA...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CCA 72 bp | AGAGGCAGATGGATCTCTCTTAGCTTGAGGCCAACCTaGTCTGAGCTACATAGAGGAACCTTGTCTCAAAAA | + |
|
Preference number: 3 (lower is better) Translates to: RGRWISLSLRPT*SELHRGTLSQK Trigger: TTTTTGAGACAAGGTTCCTCTATGTAGCTCAGACCAGGTTGGCCTCAAGCTAAGAGAGATCCATCTGCCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR CAA 90 bp | CATCATGTCCTTCCAACATTCCAGAATTCAAAGTACATCTATTTGAGCATAAGTGGTGGATTTCTGAGTTaGAGGCCAGCCTGGTCAACA | + |
|
Preference number: 3 (lower is better) Translates to: HHVLPTFQNSKYIYLSISGGFLS*RPAWST Trigger: TGTTGACCAGGCTGGCCTCAAACTCAGAAATCCACC...ACTTATGCTCAAATAGATGTACTTTGAATTCTGGAATGTTGGAAGGACATGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR-3UTR CAA 90 bp | AATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTCTTGACCAATGTAAATaGAGTCTTGACTGTCTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: NWETISGINKQANKVGGFLDQCK*SLDCLK Trigger: CTTCAGACAGTCAAGACTCAATTTACATTGGTCAAG...AAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR TCA 72 bp | TACAATTTACCAACTAACCTCCCTGGACCCTGGGAGTaGAATTTGAAATATCAGAATTGGGAAACTATCTCT | + |
|
Preference number: 3 (lower is better) Translates to: YNLPTNLPGPWE*NLKYQNWETIS Trigger: AGAGATAGTTTCCCAATTCTGATATTTCAAATTTCACTCCCAGGGTCCAGGGAGGTTAGTTGGTAAATTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR TCA 72 bp | GTAATGGGCATGAGTCTAATATTTGAAGTCAACTGCTaGTTTTTGAGTCTGCCTTGGCATATGATTTATCTT | + |
|
Preference number: 3 (lower is better) Translates to: VMGMSLIFEVNC*FLSLPWHMIYL Trigger: AAGATAAATCATATGCCAAGGCAGACTCAAAAATCAGCAGTTGACTTCAAATATTAGACTCATGCCCATTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR TCA 72 bp | CAACAAACAGGCAAACAAAGTTGGTGGCTTTGGATATaGTTGTATTCAACTACTTGTATTTTAGCTGTGATG | + |
|
Preference number: 3 (lower is better) Translates to: QQTGKQSWWLWI*LYSTTCILAVM Trigger: CATCACAGCTAAAATACAAGTAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR TCA 72 bp | AACAAAAATAATTTTATGGTTGCGGTCACTACAACATaGGGAACTGCATTAAATGATAGCAGCTTTAGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: NKNNFMVAVTTT*GTALNDSSFRN Trigger: GTTCCTAAAGCTGCTATCATTTAATGCAGTTCCTCATGTTGTAGTGACCGCAACCATAAAATTATTTTTGTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGCAGCACCTGCCACATaGGCTGCTGTCTGGGCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: YTKPGLVVHAFNPSTREAAAPAT*AAVWAR Trigger: TCTCGCCCAGACAGCAGCCCATGTGGCAGGTGCTGC...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGTGCTGGGTCCCCCATaGGTCTGCATCCACATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: YTKPGLVVHAFNPSTREAVLGPP*VCIHIL Trigger: CAAGATGTGGATGCAGACCCATGGGGGACCCAGCAC...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR GCA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAACCTGCCACATGGGCTaGTGTCTGGGCGAGAATCTT | + |
|
Preference number: 4 (lower is better) Translates to: YTKPGLVVHAFNPSTREATCHMG*CLGENL Trigger: AAGATTCTCGCCCAGACAGCAGCCCATGTGGCAGGT...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAAATAGGGCCAAGCGTTaGGCAGGTGGGGTGGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: YTKPGLVVHAFNPSTREANRAKR*AGGVEK Trigger: CTTTTCCACCCCACCTGCCCAACGCTTGGCCCTATT...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | CACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCAACTCTGGGTGGCAAATTTaGCACTTCAATCCCTGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: HSGGRGRWISEFEASLVNSGWQI*HFNPWQ Trigger: CTGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGA...GTTGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR GCA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCACAAATCGGGGGTGTATaGACACACCTGCTATGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: YTKPGLVVHAFNPSTREAQIGGV*THLLCA Trigger: AGCACATAGCAGGTGTGTGCATACACCCCCGATTTG...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | CACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCAACCTCAGTGTTTGGAAGTaGCAGCTCTTTAAGAAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: HSGGRGRWISEFEASLVNLSVWK*QLFKKG Trigger: ACCCTTCTTAAAGAGCTGCCACTTCCAAACACTGAG...GTTGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR TCA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGCTCTCCTGGAATTCTaGGGTTTAGTAAGCAAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: YTKPGLVVHAFNPSTREAALLEF*GLVSKE Trigger: TTCCTTGCTTACTAAACCTCAGAATTCCAGGAGAGC...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | GAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTGGCCAGGGTAGGTCCTaGGAAGGGCAAGTGGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: ELGNYLWNQQTGKQSWWLGQGRS*EGQVEG Trigger: GCCTTCCACTTGCCCTTCCCAGGACCTACCCTGGCC...AAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 72 bp | GGAGCTGCTAAATCTGTGATTCTCAGCCCCCAGGGGTaGTTGAACAACCCTTTCACTGGATTCCCTAAGACA | + |
|
Preference number: 4 (lower is better) Translates to: GAAKSVILSPQG*LNNPFTGFPKT Trigger: TGTCTTAGGGAATCCAGTGAAAGGGTTGTTCAACAACCCCTGGGGGCTGAGAATCACAGATTTAGCAGCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 72 bp | GCTGCTAAATCTGTGATTCTCAGCCCCCAGGGGTTGTaGAACAACCCTTTCACTGGATTCCCTAAGACAATT | + |
|
Preference number: 4 (lower is better) Translates to: AAKSVILSPQGL*NNPFTGFPKTI Trigger: AATTGTCTTAGGGAATCCAGTGAAAGGGTTGTTCAACAACCCCTGGGGGCTGAGAATCACAGATTTAGCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR TCA 90 bp | ATCAGAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGTGGGGATACAGGTGGTaGGACACTTGGACTCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: IRIGKLSLESTNRQTKLVWGYRW*DTWTQP Trigger: TGGCTGAGTCCAAGTGTCTCACCACCTGTATCCCCA...CACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR GCA 90 bp | GAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTGTAATAAGCAGCACCTaGCACATGGGCTGCTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ELGNYLWNQQTGKQSWWLVISST*HMGCCL Trigger: CAGACAGCAGCCCATGTGGCAGGTGCTGCTTATTAC...AAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | ATCAGAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGACATGGGCTGCTGTCTaGGCGAGAATCTTAGGTCGC | + |
|
Preference number: 4 (lower is better) Translates to: IRIGKLSLESTNRQTKLVTWAAV*ARILGR Trigger: GCGACCTAAGATTCTCGCCCAGACAGCAGCCCATGT...CACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTCTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR GCA 90 bp | AATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGTGTCCTCAATCTTCTaGTTCAGCTCTGCGACTCGC | + |
|
Preference number: 4 (lower is better) Translates to: NWETISGINKQANKVGGFVSSIF*FSSATR Trigger: GCGAGTCGCAGAGCTGAAGCAGAAGATTGAGGACAC...AAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | AATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTCAAGCGTTGGGCAGGTaGGGTGGAAAAGTAGATCTT | + |
|
Preference number: 4 (lower is better) Translates to: NWETISGINKQANKVGGFQALGR*GGKVDL Trigger: AAGATCTACTTTTCCACCCCACCTGCCCAACGCTTG...AAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | ATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGGATATGATTGTATTCAACTAGGGCAAGTGGAAGGCTaGAGGCAGGAGTTCATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: INKQANKVGGFGYDCIQLGQVEG*RQEFIV Trigger: TACAATGAACTCCTGCCTCCAGCCTTCCACTTGCCC...TAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | AATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGTTGGGCAGGTGGGGTaGAAAAGTAGATCTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: NWETISGINKQANKVGGFVGQVG*KSRSSV Trigger: AACAGAAGATCTACTTTTCCACCCCACCTGCCCAAC...AAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | CATCATGTCCTTCCAACATTCCAGAATTCAAAGTACATCTATTTGAGCATAAGTAGTCAGGGGGCTTTCTaGGTGGCAAATTTGGCACTT | + |
|
Preference number: 4 (lower is better) Translates to: HHVLPTFQNSKYIYLSISSQGAF*VANLAL Trigger: AAGTGCCAAATTTGCCACCCAGAAAGCCCCCTGACT...ACTTATGCTCAAATAGATGTACTTTGAATTCTGGAATGTTGGAAGGACATGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | ATCAACAAACAGGCAAACAAAGTTGGTGGCTTTGGATATGATTGTATTCAACTAGTCCAGTCCCGCCAATaGAAATTGAAACCTTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: INKQANKVGGFGYDCIQLVQSRQ*KLKPSS Trigger: GCTTGAAGGTTTCAATTTCCATTGGCGGGACTGGAC...TAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR GCA 90 bp | ATCAGAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCAATGACTTCCATATaGACTTCTGGAAACTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: IRIGKLSLESTNRQTKLVAMTSI*TSGNFS Trigger: AGAGAAGTTTCCAGAAGTGCATATGGAAGTCATTGC...CACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTCTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CCA 90 bp | GAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTTCCATATGCACTTCTaGAAACTTCTCTGTAACACT | + |
|
Preference number: 4 (lower is better) Translates to: ELGNYLWNQQTGKQSWWLFHMHF*KLLCNT Trigger: AGTGTTACAGAGAAGTTTCCAGAAGTGCATATGGAA...AAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 72 bp | CTGCCTTGGCATATGATTTATCTTGACCAATGTAAATaGAGTCTTGACTGTCTGAAGCACTATTATCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LPWHMIYLDQCK*SLDCLKHYYQE Trigger: TTCCTGATAATAGTGCTTCAGACAGTCAAGACTCAATTTACATTGGTCAAGATAAATCATATGCCAAGGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 72 bp | GTCCTTCCAACATTCCAGAATTCAAAGTACATCTATTaGAGCATAAGTATAAGATTGCCTGAGCCTTTAGTA | + |
|
Preference number: 4 (lower is better) Translates to: VLPTFQNSKYIY*SISIRLPEPLV Trigger: TACTAAAGGCTCAGGCAATCTTATACTTATGCTCAAATAGATGTACTTTGAATTCTGGAATGTTGGAAGGAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| 3UTR CAA 72 bp | CTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTaGGATATGATTGTATTCAACTACTTGTATTTTAGC | + |
|
Preference number: 4 (lower is better) Translates to: LESTNRQTKLVA*DMIVFNYLYFS Trigger: GCTAAAATACAAGTAGTTGAATACAATCATATCCAAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 90 bp | TACCAGGAAGGCCAGGGTAGGTCCTGGGAAGGGCAAGTGGAAGGCTaGAGGCAGGAGTTCATTGTACCACGCCACCTGGAAGGGATAAAC | + |
|
Preference number: 5 (lower is better) Translates to: YQEGQGRSWEGQVEG*RQEFIVPRHLEGIN Trigger: GTTTATCCCTTCCAGGTGGCGTGGTACAATGAACTCCTGCCTCCAGCCTTCCACTTGCCCTTCCCAGGACCTACCCTGGCCTTCCTGGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CAA 90 bp | TACACAAAGCCGGGCTTGGTAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCACAGGTGGTGAGACACTaGGACTCAGCCAGCTTCGAG | + |
|
Preference number: 5 (lower is better) Translates to: YTKPGLVVHAFNPSTREAQVVRH*DSASFE Trigger: CTCGAAGCTGGCTGAGTCCAAGTGTCTCACCACCTG...TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCAAGCCCGGCTTTGTGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 90 bp | GATGCGGCCAGCTCTTGTAGGCACACAGTCAGGGGGCTTTCTGGGTaGCAAATTTGGCACTTCAATCCCTGGCAGCAACATAACCCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: DAASSCRHTVRGLSG*QIWHFNPWQQHNPS Trigger: CGAGGGGTTATGTTGCTGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGAAAGCCCCCTGACTGTGTGCCTACAAGAGCTGGCCGCATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS GCA 90 bp | CACATCTTGTCGTTGGTAGTAATAAGCAGCACCTGCCACATGGGCTaGTGTCTGGGCGAGAATCTTAGGTCGCCGATTGGGGTGTACCTC | + |
|
Preference number: 5 (lower is better) Translates to: HILSLVVISSTCHMG*CLGENLRSPIGVYL Trigger: GAGGTACACCCCAATCGGCGACCTAAGATTCTCGCCCAGACAGCAGCCCATGTGGCAGGTGCTGCTTATTACTACCAACGACAAGATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS GCA 90 bp | TGGGTCTGCATCCACATCTTGTCGTTGGTAGTAATAAGCAGCACCTaGCACATGGGCTGCTGTCTGGGCGAGAATCTTAGGTCGCCGATT | + |
|
Preference number: 5 (lower is better) Translates to: WVCIHILSLVVISST*HMGCCLGENLRSPI Trigger: AATCGGCGACCTAAGATTCTCGCCCAGACAGCAGCCCATGTGGCAGGTGCTGCTTATTACTACCAACGACAAGATGTGGATGCAGACCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 90 bp | AGCTCTTGTAGGCACACAGTCAGGGGGCTTTCTGGGTGGCAAATTTaGCACTTCAATCCCTGGCAGCAACATAACCCCTCGGATGGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: SSCRHTVRGLSGWQI*HFNPWQQHNPSDGK Trigger: TTTGCCATCCGAGGGGTTATGTTGCTGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGAAAGCCCCCTGACTGTGTGCCTACAAGAGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 90 bp | AGGGTTGGGCTAAGCCTAATAGGGCCAAGCGTTGGGCAGGTGGGGTaGAAAAGTAGATCTTCTGTTCTTCGGAGTACCGTTCTTCAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: RVGLSLIGPSVGQVG*KSRSSVLRSTVLQE Trigger: CTCCTGAAGAACGGTACTCCGAAGAACAGAAGATCTACTTTTCCACCCCACCTGCCCAACGCTTGGCCCTATTAGGCTTAGCCCAACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS TCA 90 bp | GGTGAGACACTTGGACTCAGCCAGCTTCGAGCTCTCCTGGAATTCTaGGGTTTAGTAAGCAAGGAAAGAGGAAGCTCAGATGTAGTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: GETLGLSQLRALLEF*GLVSKERGSSDVVL Trigger: TAGCACTACATCTGAGCTTCCTCTTTCCTTGCTTACTAAACCTCAGAATTCCAGGAGAGCTCGAAGCTGGCTGAGTCCAAGTGTCTCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 90 bp | ATTGGGGTGTACCTCATAGTCAGCAATGACTTCCATATGCACTTCTaGAAACTTCTCTGTAACACTCCTCAGGTGGTAGGACACACATTG | + |
|
Preference number: 5 (lower is better) Translates to: IGVYLIVSNDFHMHF*KLLCNTPQVVGHTL Trigger: CAATGTGTGTCCTACCACCTGAGGAGTGTTACAGAGAAGTTTCCAGAAGTGCATATGGAAGTCATTGCTGACTATGAGGTACACCCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CAA 90 bp | GAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTTCTGGGTGGCAAATTaGGCACTTCAATCCCTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: ELGNYLWNQQTGKQSWWLFWVAN*ALQSLA Trigger: TGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGAA...AAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CAA 90 bp | GAATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTGTCTGCATCCACATCTaGTCGTTGGTAGTAATAAGC | + |
|
Preference number: 5 (lower is better) Translates to: ELGNYLWNQQTGKQSWWLVCIHI*SLVVIS Trigger: GCTTATTACTACCAACGACAAGATGTGGATGCAGAC...AAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CAA 90 bp | AATTGGGAAACTATCTCTGGAATCAACAAACAGGCAAACAAAGTTGGTGGCTTTCTCTTTAAGAAGGGTTaGAGGGCTCTGTCAAACATA | + |
|
Preference number: 5 (lower is better) Translates to: NWETISGINKQANKVGGFLFKKG*RALSNI Trigger: TATGTTTGACAGAGCCCTCAAACCCTTCTTAAAGAG...AAAGCCACCAACTTTGTTTGCCTGTTTGTTGATTCCAGAGATAGTTTCCCAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS-3UTR CAA 90 bp | CATCATGTCCTTCCAACATTCCAGAATTCAAAGTACATCTATTTGAGCATAAGTTCCCGCCAATGGAAATaGAAACCTTCAAGCAGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: HHVLPTFQNSKYIYLSISSRQWK*KPSSRV Trigger: CACTCTGCTTGAAGGTTTCAATTTCCATTGGCGGGA...ACTTATGCTCAAATAGATGTACTTTGAATTCTGGAATGTTGGAAGGACATGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS GCA 72 bp | TCGTTGGTAGTAATAAGCAGCACCTGCCACATGGGCTaGTGTCTGGGCGAGAATCTTAGGTCGCCGATTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SLVVISSTCHMG*CLGENLRSPIG Trigger: CCCAATCGGCGACCTAAGATTCTCGCCCAGACAGCAGCCCATGTGGCAGGTGCTGCTTATTACTACCAACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 72 bp | GGGCTTTCTGGGTGGCAAATTTGGCACTTCAATCCCTaGCAGCAACATAACCCCTCGGATGGCAAACCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GLSGWQIWHFNP*QQHNPSDGKPA Trigger: GGCTGGTTTGCCATCCGAGGGGTTATGTTGCTGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGAAAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 72 bp | AGGCACACAGTCAGGGGGCTTTCTGGGTGGCAAATTTaGCACTTCAATCCCTGGCAGCAACATAACCCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: RHTVRGLSGWQI*HFNPWQQHNPS Trigger: CGAGGGGTTATGTTGCTGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGAAAGCCCCCTGACTGTGTGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 72 bp | AGCTCTTGTAGGCACACAGTCAGGGGGCTTTCTGGGTaGCAAATTTGGCACTTCAATCCCTGGCAGCAACAT | + |
|
Preference number: 6 (lower is better) Translates to: SSCRHTVRGLSG*QIWHFNPWQQH Trigger: ATGTTGCTGCCAGGGATTGAAGTGCCAAATTTGCCACCCAGAAAGCCCCCTGACTGTGTGCCTACAAGAGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CAA 90 bp | ACCGGGTCTCTCAGTGTTTGGAAGTGGCAGCTCTTTAAGAAGGGTTaGAGGGCTCTGTCAAACATAGCAGGTGTGCTGAGTACCAGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: TGSLSVWKWQLFKKG*RALSNIAGVLSTRK Trigger: CTTCCTGGTACTCAGCACACCTGCTATGTTTGACAGAGCCCTCAAACCCTTCTTAAAGAGCTGCCACTTCCAAACACTGAGAGACCCGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS GCA 72 bp | ATCCACATCTTGTCGTTGGTAGTAATAAGCAGCACCTaGCACATGGGCTGCTGTCTGGGCGAGAATCTTAGG | + |
|
Preference number: 6 (lower is better) Translates to: IHILSLVVISST*HMGCCLGENLR Trigger: CCTAAGATTCTCGCCCAGACAGCAGCCCATGTGGCAGGTGCTGCTTATTACTACCAACGACAAGATGTGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 72 bp | CTAAGCCTAATAGGGCCAAGCGTTGGGCAGGTGGGGTaGAAAAGTAGATCTTCTGTTCTTCGGAGTACCGTT | + |
|
Preference number: 6 (lower is better) Translates to: LSLIGPSVGQVG*KSRSSVLRSTV Trigger: AACGGTACTCCGAAGAACAGAAGATCTACTTTTCCACCCCACCTGCCCAACGCTTGGCCCTATTAGGCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CAA 72 bp | CTTCTCTGTAACACTCCTCAGGTGGTAGGACACACATaGATCCACCGGGTCTCTCAGTGTTTGGAAGTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: LLCNTPQVVGHT*IHRVSQCLEVA Trigger: TGCCACTTCCAAACACTGAGAGACCCGGTGGATCAATGTGTGTCCTACCACCTGAGGAGTGTTACAGAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS TCA 72 bp | CTTGGACTCAGCCAGCTTCGAGCTCTCCTGGAATTCTaGGGTTTAGTAAGCAAGGAAAGAGGAAGCTCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: LGLSQLRALLEF*GLVSKERGSSD Trigger: ATCTGAGCTTCCTCTTTCCTTGCTTACTAAACCTCAGAATTCCAGGAGAGCTCGAAGCTGGCTGAGTCCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CAA 72 bp | CTCAGTGTTTGGAAGTGGCAGCTCTTTAAGAAGGGTTaGAGGGCTCTGTCAAACATAGCAGGTGTGCTGAGT | + |
|
Preference number: 6 (lower is better) Translates to: LSVWKWQLFKKG*RALSNIAGVLS Trigger: ACTCAGCACACCTGCTATGTTTGACAGAGCCCTCAAACCCTTCTTAAAGAGCTGCCACTTCCAAACACTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||
| CDS CCA 72 bp | TACCTCATAGTCAGCAATGACTTCCATATGCACTTCTaGAAACTTCTCTGTAACACTCCTCAGGTGGTAGGA | + |
|
Preference number: 6 (lower is better) Translates to: YLIVSNDFHMHF*KLLCNTPQVVG Trigger: TCCTACCACCTGAGGAGTGTTACAGAGAAGTTTCCAGAAGTGCATATGGAAGTCATTGCTGACTATGAGGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030453.5 |
||