RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MLXIPL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005373

Ensembl transcript IDs: ENSMUST00000005507.10, ENSMUST00000123370.3, ENSMUST00000128691.8, ENSMUST00000129008.5, ENSMUST00000142385.8, ENSMUST00000153519.8, ENSMUST00000154840.3, ENSMUST00000201977.4

Found 528 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGATGCCTGCCATGCTCTGGCTAGCCCTTGCCCTGATCTCTTCTaGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGC +
Preference number: 1 (lower is better)
Translates to: QDACHALASPCPDLF*HQTPVASVRKPPYS
Trigger: GCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCCAGAAGAGATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCATCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CCA 90 bp AGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTaGCGGAGGCTGTGCAAGCTGGCGGTAGACACCATCCCATTGAAG +
Preference number: 1 (lower is better)
Translates to: RAGREQYCSSQASEV*RRLCKLAVDTIPLK
Trigger: CTTCAATGGGATGGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR TCA 90 bp GCTCAGGCACAAGGCTGGGGTCAGTCAGGATGCTTGTGGAAGTGCTaGGTTGGCGAAGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTA +
Preference number: 1 (lower is better)
Translates to: AQAQGWGQSGCLWKC*VGEGNSGQLAGEQV
Trigger: TACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGACCCCAGCCTTGTGCCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR TCA 90 bp AGGAGGTACCCAGGTCAGCCGACGGCCTCCACACACAAGCACAGGTaGGCACAACTGCACACAAGCAAGTTGAAAAGTACTCAAAGGGCC +
Preference number: 1 (lower is better)
Translates to: RRYPGQPTASTHKHR*AQLHTSKLKSTQRA
Trigger: GGCCCTTTGAGTACTTTTCAACTTGCTTGTGTGCAGTTGTGCTCACCTGTGCTTGTGTGTGGAGGCCGTCGGCTGACCTGGGTACCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR CCA 90 bp TACGCACACACACATCTACATTCATGCAAGATGCCTGCCATGCTCTaGCTAGCCCTTGCCCTGATCTCTTCTGGCATCAGACCCCAGTGG +
Preference number: 1 (lower is better)
Translates to: YAHTHLHSCKMPAML*LALALISSGIRPQW
Trigger: CCACTGGGGTCTGATGCCAGAAGAGATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCATCTTGCATGAATGTAGATGTGTGTGTGCGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR GCA 90 bp CCGTGCAGGGTGTCGAATCCTAGCTTAATATTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTGATACGTCGGTTCTCCATCTTGTTG +
Preference number: 1 (lower is better)
Translates to: PCRVSNPSLILNRLF*SAEMCVIRRFSILL
Trigger: CAACAAGATGGAGAACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAGCTAGGATTCGACACCCTGCACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR TCA 90 bp CTGCACACAAGCAAGTTGAAAAGTACTCAAAGGGCCGGGTGGTGGTaGCATATGCCTTTAATTCCAGTATTCCAGAGGCAGGGGTGGGTG +
Preference number: 1 (lower is better)
Translates to: LHTSKLKSTQRAGWW*HMPLIPVFQRQGWV
Trigger: CACCCACCCCTGCCTCTGGAATACTGGAATTAAAGGCATATGTCACCACCACCCGGCCCTTTGAGTACTTTTCAACTTGCTTGTGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR GCA 90 bp TCACCTTTCACTGCTGGCAGCTCTGAGTCCCATACTGAGACACATTaGCAGTCACACCAACACCAACCCTTGCAGACAGTTTTTGCTTTT +
Preference number: 1 (lower is better)
Translates to: SPFTAGSSESHTETH*QSHQHQPLQTVFAF
Trigger: AAAAGCAAAAACTGTCTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGAGCTGCCAGCAGTGAAAGGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR TCA 90 bp CATTTGGGGCCCTCTGTTATTAAAGGGAGGTCCAAAGATGGGATATaGGTCACCAGGGATCATAGCATTAGCAACAGTGCAGGAATGGAA +
Preference number: 1 (lower is better)
Translates to: HLGPSVIKGRSKDGI*VTRDHSISNSAGME
Trigger: TTCCATTCCTGCACTGTTGCTAATGCTATGATCCCTGGTGACTCATATCCCATCTTTGGACCTCCCTTTAATAACAGAGGGCCCCAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp TCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGTCAGGATGAGGAGCCAATGTGGCTaGGCCTGGAGGTGGCCGGGG +
Preference number: 2 (lower is better)
Translates to: SVTARVACSGTRLGSVRMRSQCG*AWRWPG
Trigger: CCCCGGCCACCTCCAGGCCCAGCCACATTGGCTCCT...CATCCTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTTCCAGCCAGGCCAGTaGGGTCTGGCGGAGGCTGTG +
Preference number: 2 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRFQPGQ*GLAEAV
Trigger: CACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAA...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR TCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCTTCCAGCCAGGCCAGTaGGGTCTGGCGGAGGCTGTG +
Preference number: 2 (lower is better)
Translates to: YNGLPRVPSVTARVACSGFQPGQ*GLAEAV
Trigger: CACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAA...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCTGGGAGGAGCCAATGTaGCTGGGCCTGGAGGTGGCC +
Preference number: 2 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVWEEPM*LGLEVA
Trigger: GGCCACCTCCAGGCCCAGCCACATTGGCTCCTCCCA...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGGGTGCCCTCTGTGACTaGCCGTGTGGCTTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRGALCD*PCGLLR
Trigger: CCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACC...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCGGTGCCCTCTGTGACTaGCCGTGTGGCTTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVGALCD*PCGLLR
Trigger: CCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACC...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp GCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGCATCAGACCCCAGTaGCCTCAGTCAGGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: AGEQVGNSTVPARPVRSGGIRPQ*PQSGSH
Trigger: GTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC...GCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp TCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGTCAGGATGGCCCCTATTTACCGCTaGAGGCTGGAGGCGAGAGCC +
Preference number: 2 (lower is better)
Translates to: SVTARVACSGTRLGSVRMAPIYR*RLEARA
Trigger: GGCTCTCGCCTCCAGCCTCCAGCGGTAAATAGGGGC...CATCCTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGACCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACA +
Preference number: 2 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRTLRLG*ALSVLT
Trigger: TGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGT...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAGGGTGGGTGGATCTCTaGGTTGGAGGCCAGCCTGGC +
Preference number: 2 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGGWVDL*VGGQPG
Trigger: GCCAGGCTGGCCTCCAACTCAGAGATCCACCCACCC...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR GCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCGTGGCCGGTAGCTGCTaGTGGCACAAGTTGATGGCA +
Preference number: 2 (lower is better)
Translates to: YNGLPRVPSVTARVACSGVAGSC*WHKLMA
Trigger: TGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCAC...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCTCCAGTTGTGCAGCGTaGGCGTCCGGACATAGTCAT +
Preference number: 2 (lower is better)
Translates to: AGEQVGNSTVPARPVRSGSSCAA*ASGHSH
Trigger: ATGACTATGTCCGGACGCGCACGCTGCACAACTGGA...GCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCCAGAACTTCCAGTTGTaGAGCGTGCGCGTCCGGACA +
Preference number: 2 (lower is better)
Translates to: YNGLPRVPSVTARVACSGQNFQL*SVRVRT
Trigger: TGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTG...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCGTCTGGCGGAGGCTGTaGAAGCTGGCGGTAGACACC +
Preference number: 2 (lower is better)
Translates to: EVVSATLGTFQICRETASVWRRL*KLAVDT
Trigger: GGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGAC...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAGGCATCAGACCCCAGTaGCCTCAGTCAGGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSAGIRPQ*PQSGSH
Trigger: GTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACCAATGTGGCTGGGCCTaGAGGTGGCCGGGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNQCGWA*RWPGWC
Trigger: ACACCACCCCGGCCACCTCCAGGCCCAGCCACATTG...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACGGACAACCAGGGACCTaGGAGGAGCCAATGTGGCTG +
Preference number: 2 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHGQPGT*EEPMWL
Trigger: CAGCCACATTGGCTCCTCCCAGGTCCCTGGTTGTCC...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAGAGCCGCTCTGCTTTaGGGACAACCAGGGACCTGG +
Preference number: 2 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSARAALL*GQPGTW
Trigger: CCAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCT...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp GAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGGCCGCTCACTGCCGCTaGAGGCTGGAGGCGAGAGCC +
Preference number: 2 (lower is better)
Translates to: ELGNFHQDYNGLPRVPSVAAHCR*RLEARA
Trigger: GGCTCTCGCCTCCAGCCTCCAGCGGCAGTGAGCGGC...CACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129008.5
3UTR-3UTR CCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCGTGCTTGCTCAGGCTTaGCTGGGTACAGGCAGGACT +
Preference number: 2 (lower is better)
Translates to: YNGLPRVPSVTARVACSGVLAQA*LGTGRT
Trigger: AGTCCTGCCTGTACCCAGCCAAGCCTGAGCAAGCAC...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp TTGAGGGGGAGACAGGTGGACACTCAGTGCCCCCGAGGGTTGTATGGAGTTGAGGGAACCTTCCAGATCTaGAGGGAAACGGCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: LRGRQVDTQCPRGLYGVEGTFQI*RETASQ
Trigger: CTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCC...CTCAACTCCATACAACCCTCGGGGGCACTGAGTGTCCACCTGTCTCCCCCTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp GGCTGGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTGTCGAATCCTAGCTTAGCTGCCCGTTCCTGCTaGAGCATCAGGATGTACTCC +
Preference number: 2 (lower is better)
Translates to: GWALSVLTSPCRVSNPSLAARSC*SIRMYS
Trigger: GGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGC...TAAGCTAGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGCAGAACTTCCAGTTGTaGAGCGTGCGCGTCCGGACA +
Preference number: 2 (lower is better)
Translates to: SDEDAEHPELPVVQRARPQNFQL*SVRVRT
Trigger: TGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTG...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAGGAGGCTCCAGTGCTTaGTCAGGCTTGGCTGGGTAC +
Preference number: 2 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGGGSSA*SGLAGY
Trigger: GTACCCAGCCAAGCCTGAGCAAGCACTGGAGCCTCC...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGGTGAGTGCAACACTTaGAACCTTCCAGATCTGCAG +
Preference number: 2 (lower is better)
Translates to: RVPSVTARVACSGTRLGSGECNT*NLPDLQ
Trigger: CTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCGGCATCAGACCCCAGTaGCCTCAGTCAGGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: DAEHPELPVVQRARPDIVGIRPQ*PQSGSH
Trigger: GTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp TGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAACAGGCCAGTGAGGTCTaGCGGAGGCTGTGCAAGCTG +
Preference number: 2 (lower is better)
Translates to: CAACASGHSHQTCPASGQQASEV*RRLCKL
Trigger: CAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTG...TTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CGAAGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCCAGGCCAGTGAGGTCTaGCGGAGGCTGTGCAAGCTG +
Preference number: 2 (lower is better)
Translates to: RREFRTVGRRAGREQYCSQASEV*RRLCKL
Trigger: CAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTG...GGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCAGGAGCCAATGTGGCTaGGCCTGGAGGTGGCCGGGG +
Preference number: 2 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLRSQCG*AWRWPG
Trigger: CCCCGGCCACCTCCAGGCCCAGCCACATTGGCTCCT...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAATCTGGTCAAAGCGCTaGTGTGTGATGGGCACCCCG +
Preference number: 2 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGIWSKR*CVMGTP
Trigger: CGGGGTGCCCATCACACATCAGCGCTTTGACCAGAT...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCGCTGCCCGTTCCTGCTaGAGCATCAGGATGTACTCC +
Preference number: 2 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPAARSC*SIRMYS
Trigger: GGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGC...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAGCTGCCCGTTCCTGCTaGAGCATCAGGATGTACTCC +
Preference number: 2 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGAARSC*SIRMYS
Trigger: GGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGC...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGACAGAACTTCCAGTTGTaGAGCGTGCGCGTCCGGACA +
Preference number: 2 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGQNFQL*SVRVRT
Trigger: TGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTG...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp CAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGAGTCGGAGGCTCCAGTaGTTGCTCAGGCTTGGCTGG +
Preference number: 2 (lower is better)
Translates to: QWPQSGSHPIAPHVTSAKSRRLQ*LLRLGW
Trigger: CCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACT...CTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCAGGGAGGTCCAAAGATaGGATATGAGTCACCAGGGA +
Preference number: 2 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGREVQR*DMSHQG
Trigger: TCCCTGGTGACTCATATCCCATCTTTGGACCTCCCT...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTATGCCTGCCATGCTCTaGCTAGCCCTTGCCCTGATC +
Preference number: 2 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTMPAML*LALALI
Trigger: GATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCAT...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAGCTCAGGCACAAGGCTaGGGTCAGTCAGGATGCTTG +
Preference number: 2 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGAQAQG*GQSGCL
Trigger: CAAGCATCCTGACTGACCCCAGCCTTGTGCCTGAGC...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp GGAGATCTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAATGTGGCTGGGCCTaGAGGTGGCCGGGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: GDLLLCLSAQELRMVPFIQCGWA*RWPGWC
Trigger: ACACCACCCCGGCCACCTCCAGGCCCAGCCACATTG...GATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp CGAAGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCATCTGGTCAAAGCGCTaGTGTGTGATGGGCACCCCG +
Preference number: 2 (lower is better)
Translates to: RREFRTVGRRAGREQYCSIWSKR*CVMGTP
Trigger: CGGGGTGCCCATCACACATCAGCGCTTTGACCAGAT...GGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp TTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGTGGCCGGTAGCTGCTaGTGGCACAAGTTGATGGCA +
Preference number: 2 (lower is better)
Translates to: FHQDYNGLPRVPSVTARVVAGSC*WHKLMA
Trigger: TGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCAC...CACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGATCCAGTTGTGCAGCGTaGGCGTCCGGACATAGTCAT +
Preference number: 2 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGSSCAA*ASGHSH
Trigger: ATGACTATGTCCGGACGCGCACGCTGCACAACTGGA...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGACAGAACTTCCAGTTGTaGAGCGTGCGCGTCCGGACA +
Preference number: 2 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGQNFQL*SVRVRT
Trigger: TGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTG...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTCTGGCGGAGGCTGTaGAAGCTGGCGGTAGACACC +
Preference number: 2 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSVWRRL*KLAVDT
Trigger: GGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGAC...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGTCAGAAACTGTATCCTaGGGGGACTCTGGAGGCCGG +
Preference number: 2 (lower is better)
Translates to: PKEVVSATLGTFQICRETSETVS*GDSGGR
Trigger: CCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGA...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp AATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGTCAGAAACTGTATCCTaGGGGGACTCTGGAGGCCGG +
Preference number: 2 (lower is better)
Translates to: NSGQLAGEQVGNSTVPARSETVS*GDSGGR
Trigger: CCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGA...CCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAAGGCGAGAGCCGCTCTaGTTTGGGGACAACCAGGGA +
Preference number: 2 (lower is better)
Translates to: IPKEVVSATLGTFQICRERREPL*FGDNQG
Trigger: TCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTCGCCT...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp TCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGTCAGGATGGGTGAGTGCAACACTTaGAACCTTCCAGATCTGCAG +
Preference number: 2 (lower is better)
Translates to: SVTARVACSGTRLGSVRMGECNT*NLPDLQ
Trigger: CTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC...CATCCTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGTCCAGTTGTGCAGCGTaGGCGTCCGGACATAGTCAT +
Preference number: 2 (lower is better)
Translates to: PKEVVSATLGTFQICRETSSCAA*ASGHSH
Trigger: ATGACTATGTCCGGACGCGCACGCTGCACAACTGGA...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAGGTGAGTGCAACACTTaGAACCTTCCAGATCTGCAG +
Preference number: 2 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSAGECNT*NLPDLQ
Trigger: CTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGGTGAGTGCAACACTTaGAACCTTCCAGATCTGCAG +
Preference number: 2 (lower is better)
Translates to: SDEDAEHPELPVVQRARPGECNT*NLPDLQ
Trigger: CTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACAGGGAGGTCCAAAGATaGGATATGAGTCACCAGGGA +
Preference number: 2 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHREVQR*DMSHQG
Trigger: TCCCTGGTGACTCATATCCCATCTTTGGACCTCCCT...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCAGAGGCATCAGACCCCAGTaGCCTCAGTCAGGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: LSPILRHIASHTNTNPCRGIRPQ*PQSGSH
Trigger: GTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC...TCTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR CAA 90 bp GAGGTCTGGCGGAGGCTGTGCAAGCTGGCGGTAGACACCATCCCATaGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAG +
Preference number: 2 (lower is better)
Translates to: EVWRRLCKLAVDTIP*KDSNKGRMRMLNTQ
Trigger: CTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CAA 90 bp AGCGTGCTGACAAGTCCGTGCAGGGTGTCGAATCCTAGCTTAATATaGAACCGCCTCTTCTGCTCCGCGGAGATGTGTGTGATACGTCGG +
Preference number: 2 (lower is better)
Translates to: SVLTSPCRVSNPSLI*NRLFCSAEMCVIRR
Trigger: CCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAGCTAGGATTCGACACCCTGCACGGACTTGTCAGCACGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCATCCAAAGATGGGATATaGGTCACCAGGGATCATAGC +
Preference number: 2 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSASKDGI*VTRDHS
Trigger: GCTATGATCCCTGGTGACTCATATCCCATCTTTGGA...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR TCA 90 bp TCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAATCTGGTCAAAGCGCTaGTGTGTGATGGGCACCCCG +
Preference number: 2 (lower is better)
Translates to: SGSHPIAPHVTSAKAKRGIWSKR*CVMGTP
Trigger: CGGGGTGCCCATCACACATCAGCGCTTTGACCAGAT...TCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp TGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAACCTGCTCTGCCTCTCTaGTCAGGAACTAAGGATGGT +
Preference number: 2 (lower is better)
Translates to: CAACASGHSHQTCPASGQPALPL*SGTKDG
Trigger: ACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG...TTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGATAGCTGCCCGTTCCTaGTGCAGCATCAGGATGTAC +
Preference number: 2 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQIAARS*CSIRMY
Trigger: GTACATCCTGATGCTGCAGCAGGAACGGGCAGCTAT...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGGCCGGTAGCTGCTaGTGGCACAAGTTGATGGCA +
Preference number: 2 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSVAGSC*WHKLMA
Trigger: TGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCAC...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCGGTGCCCTCTGTGACTaGCCGTGTGGCTTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLGALCD*PCGLLR
Trigger: CCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACC...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCATGCCTGCCATGCTCTaGCTAGCCCTTGCCCTGATC +
Preference number: 2 (lower is better)
Translates to: LLLCLSAQELRMVPFIQSMPAML*LALALI
Trigger: GATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCAT...GCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCGGTGGATCTCTGAGTTaGAGGCCAGCCTGGCCTATC +
Preference number: 2 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLGGSLS*RPAWPI
Trigger: GATAGGCCAGGCTGGCCTCCAACTCAGAGATCCACC...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR CCA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCTGGGAGGAGCCAATGTaGCTGGGCCTGGAGGTGGCC +
Preference number: 2 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTWEEPM*LGLEVA
Trigger: GGCCACCTCCAGGCCCAGCCACATTGGCTCCTCCCA...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCCAAAGATGGGATATaGGTCACCAGGGATCATAGC +
Preference number: 2 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPSKDGI*VTRDHS
Trigger: GCTATGATCCCTGGTGACTCATATCCCATCTTTGGA...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR TCA 90 bp TGTCTACACGACCCCGGCTTAGGACAGTTTGAGGGGGAGACAGGTGGACACTCATCCAAAGATGGGATATaGGTCACCAGGGATCATAGC +
Preference number: 2 (lower is better)
Translates to: CLHDPGLGQFEGETGGHSSKDGI*VTRDHS
Trigger: GCTATGATCCCTGGTGACTCATATCCCATCTTTGGA...TGAGTGTCCACCTGTCTCCCCCTCAAACTGTCCTAAGCCGGGGTCGTGTAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGACACATCTACATTCATaGAAGATGCCTGCCATGCTC +
Preference number: 2 (lower is better)
Translates to: SDEDAEHPELPVVQRARPTHLHS*KMPAML
Trigger: GAGCATGGCAGGCATCTTGCATGAATGTAGATGTGT...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAATAGCTGCCCGTTCCTaGTGCAGCATCAGGATGTAC +
Preference number: 2 (lower is better)
Translates to: IPKEVVSATLGTFQICREIAARS*CSIRMY
Trigger: GTACATCCTGATGCTGCAGCAGGAACGGGCAGCTAT...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTATTTCATCCCGCAGCTaGTGCGCCTCCTCCTGCATA +
Preference number: 2 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSISSRS*CASSCI
Trigger: TATGCAGGAGGAGGCGCAGCAGCTGCGGGATGAAAT...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGGTGAGTGCAACACTTaGAACCTTCCAGATCTGCAG +
Preference number: 2 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQGECNT*NLPDLQ
Trigger: CTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAGGGAGGTCCAAAGATaGGATATGAGTCACCAGGGA +
Preference number: 2 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGREVQR*DMSHQG
Trigger: TCCCTGGTGACTCATATCCCATCTTTGGACCTCCCT...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp TGTTCCTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCGCTCAGGCACAAGGCTaGGGTCAGTCAGGATGCTTG +
Preference number: 2 (lower is better)
Translates to: CSWSLETFTRIIMVSPGCAQAQG*GQSGCL
Trigger: CAAGCATCCTGACTGACCCCAGCCTTGTGCCTGAGC...GCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp AAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTTTACCGCTGGAGGCTaGAGGCGAGAGCCGCTCTGC +
Preference number: 2 (lower is better)
Translates to: KDGTLYPKQEVVRKQTDIFTAGG*RREPLC
Trigger: GCAGAGCGGCTCTCGCCTCCAGCCTCCAGCGGTAAA...GATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR-3UTR TCA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTAGGGTTGTATGGAGTTaGGATCCCCTGATAGTCGCC +
Preference number: 2 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSRVVWS*DPLIVA
Trigger: GGCGACTATCAGGGGATCTCAACTCCATACAACCCT...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp GAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGATAGCTGCCCGTTCCTaGTGCAGCATCAGGATGTAC +
Preference number: 2 (lower is better)
Translates to: ELGNFHQDYNGLPRVPSVIAARS*CSIRMY
Trigger: GTACATCCTGATGCTGCAGCAGGAACGGGCAGCTAT...CACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCGGAACCTTCCAGATCTaGAGGGAAACGGCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSGTFQI*RETASQ
Trigger: CTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCC...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACACCAACACCAACCCTTaGAGACAGTTTTTGCTTTTA +
Preference number: 2 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHTNTNP*RQFLLL
Trigger: TAAAAGCAAAAACTGTCTGCAAGGGTTGGTGTTGGT...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR GCA 90 bp GATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTGTGGCCGGTAGCTGCTaGTGGCACAAGTTGATGGCA +
Preference number: 2 (lower is better)
Translates to: DGTLYPKQEVVRKQTDISVAGSC*WHKLMA
Trigger: TGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCAC...AGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACAGGCGAGAGCCGCTCTaGTTTGGGGACAACCAGGGA +
Preference number: 2 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNRREPL*FGDNQG
Trigger: TCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTCGCCT...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGGAACCTTCCAGATCTaGAGGGAAACGGCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSGTFQI*RETASQ
Trigger: CTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCC...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CCA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAATGCCTGCCATGCTCTaGCTAGCCCTTGCCCTGATC +
Preference number: 2 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSMPAML*LALALI
Trigger: GATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCAT...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CAA 90 bp CCAGCCAGGATTTTTAGAAGCGTGTTCACAAGTTGTTCCTGGAGCTaGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCT +
Preference number: 2 (lower is better)
Translates to: PARIFRSVFTSCSWS*ETFTRIIMVSPGCP
Trigger: AGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACAACTTGTGAACACGCTTCTAAAAATCCTGGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR TCA 90 bp GTGACATATGCCTTTAATTCCAGTATTCCAGAGGCAGGGGTGGGTGGATCTCTGCAAAGCAGGAAGTTGTaGGGAAACAGACCGACATCT +
Preference number: 2 (lower is better)
Translates to: VTYAFNSSIPEAGVGGSLQSRKL*GNRPTS
Trigger: AGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTG...CAGAGATCCACCCACCCCTGCCTCTGGAATACTGGAATTAAAGGCATATGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR GCA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCCCTGCTCTGCCTCTCTaGTCAGGAACTAAGGATGGT +
Preference number: 2 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTPALPL*SGTKDG
Trigger: ACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp TCTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCAGACACATCTACATTCATaGAAGATGCCTGCCATGCTC +
Preference number: 2 (lower is better)
Translates to: SESHTETHCQSHQHQPLQTHLHS*KMPAML
Trigger: GAGCATGGCAGGCATCTTGCATGAATGTAGATGTGT...CTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR GCA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCATCCAGTTGTGCAGCGTaGGCGTCCGGACATAGTCAT +
Preference number: 2 (lower is better)
Translates to: DHSISNSAGMELGFSPSPSSCAA*ASGHSH
Trigger: ATGACTATGTCCGGACGCGCACGCTGCACAACTGGA...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR GCA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCATTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTG +
Preference number: 2 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSLNRLF*SAEMCV
Trigger: CACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAA...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR GCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCCTTCTGAAGCGTGGTTaGTTTGCTCACCTTGAGGCT +
Preference number: 2 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSLLKRG*FAHLEA
Trigger: AGCCTCAAGGTGAGCAAAGCAACCACGCTTCAGAAG...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CCA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCAGGGAGGTCCAAAGATaGGATATGAGTCACCAGGGA +
Preference number: 2 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTREVQR*DMSHQG
Trigger: TCCCTGGTGACTCATATCCCATCTTTGGACCTCCCT...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR TCA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCTCCAAAGATGGGATATaGGTCACCAGGGATCATAGC +
Preference number: 2 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTSKDGI*VTRDHS
Trigger: GCTATGATCCCTGGTGACTCATATCCCATCTTTGGA...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR GCA 72 bp AAGGCACGGGCACGGGGGATTTCAGAAACTGTATCCTaGGGGGACTCTGGAGGCCGGAGGAGGGTACCGGGC +
Preference number: 3 (lower is better)
Translates to: KARARGISETVS*GDSGGRRRVPG
Trigger: GCCCGGTACCCTCCTCCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGAAATCCCCCGTGCCCGTGCCTT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CAA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCGACTGCCCGTGTGGCTaGCTCAGGCACAAGGCTGGG +
Preference number: 3 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVDCPCG*LRHKAG
Trigger: CCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTC...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR TCA 72 bp CAAACATGTCCCGCATCTGGTCAAAGCGCTGATGTGTaGTGGGCACCCCGGTGGCCGGTAGCTGCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: QTCPASGQSADV*WAPRWPVAAAG
Trigger: GCCAGCAGCAGCTACCGGCCACCGGGGTGCCCATCACACATCAGCGCTTTGACCAGATGCGGGACATGTTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp TTGAGGGGGAGACAGGTGGACACTCAGTGCCCCCGAGGGTTGTATGGAGTTGAGCGGAGGCTCCAGTGCTaGCTCAGGCTTGGCTGGGTA +
Preference number: 3 (lower is better)
Translates to: LRGRQVDTQCPRGLYGVERRLQC*LRLGWV
Trigger: TACCCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCG...CTCAACTCCATACAACCCTCGGGGGCACTGAGTGTCCACCTGTCTCCCCCTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR GCA 72 bp AGGAGGGTACCGGGCATAGTCGGAGGCTCCAGTGCTTaGTCAGGCTTGGCTGGGTACAGGCAGGACTATGAG +
Preference number: 3 (lower is better)
Translates to: RRVPGIVGGSSA*SGLAGYRQDYE
Trigger: CTCATAGTCCTGCCTGTACCCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR CCA 72 bp AGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTaGCGGAGGCTGTGCAAGCTGGCGGTAGACACCATC +
Preference number: 3 (lower is better)
Translates to: REQYCSSQASEV*RRLCKLAVDTI
Trigger: GATGGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp AATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGGACTGCCCGTGTGGCTaGCTCAGGCACAAGGCTGGG +
Preference number: 3 (lower is better)
Translates to: NSGQLAGEQVGNSTVPARDCPCG*LRHKAG
Trigger: CCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTC...CCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CCA 72 bp GCCCTTGCCCTGATCTCTTCTGGCATCAGACCCCAGTaGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCAT +
Preference number: 3 (lower is better)
Translates to: ALALISSGIRPQ*PQSGSHPIAPH
Trigger: ATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCCAGAAGAGATCAGGGCAAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CCA 72 bp TGCCATGCTCTGGCTAGCCCTTGCCCTGATCTCTTCTaGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCA +
Preference number: 3 (lower is better)
Translates to: CHALASPCPDLF*HQTPVASVRKP
Trigger: TGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCCAGAAGAGATCAGGGCAAGGGCTAGCCAGAGCATGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp TTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGACCCAGAACTTCCAGTaGTGCAGCGTGCGCGTCCGG +
Preference number: 3 (lower is better)
Translates to: FHQDYNGLPRVPSVTARVTQNFQ*CSVRVR
Trigger: CCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGT...CACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp TTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGAGAGCCGCTCTGCTTaGGGGACAACCAGGGACCTG +
Preference number: 3 (lower is better)
Translates to: FHQDYNGLPRVPSVTARVESRSA*GTTRDL
Trigger: CAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTC...CACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CAA 90 bp GGGTCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAACCCAGAACTTCCAGTaGTGCAGCGTGCGCGTCCGG +
Preference number: 3 (lower is better)
Translates to: GSVRMLVEVLSWRREFRTTQNFQ*CSVRVR
Trigger: CCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGT...TGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp CCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCTGCTCGACTGCCCGTGTGGCTaGCTCAGGCACAAGGCTGGG +
Preference number: 3 (lower is better)
Translates to: PIAPHVTSAKAKRGDLLLDCPCG*LRHKAG
Trigger: CCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTC...GAGCAGGAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR GCA 72 bp TTCATGCAAGATGCCTGCCATGCTCTGGCTAGCCCTTaGCCTGATCTCTTCTGGCATCAGACCCCAGTGGCC +
Preference number: 3 (lower is better)
Translates to: FMQDACHALASP*PDLFWHQTPVA
Trigger: GGCCACTGGGGTCTGATGCCAGAAGAGATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCATCTTGCATGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR GCA 72 bp AGGCTGGGCTGGGCACTGAGCGTGCTGACAAGTCCGTaGAGGGTGTCGAATCCTAGCTTAATATTGAACCGC +
Preference number: 3 (lower is better)
Translates to: RLGWALSVLTSP*RVSNPSLILNR
Trigger: GCGGTTCAATATTAAGCTAGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CAA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTAGTGCTTGCTCAGGCTaGGCTGGGTACAGGCAGGAC +
Preference number: 3 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSSACSG*AGYRQD
Trigger: GTCCTGCCTGTACCCAGCCAAGCCTGAGCAAGCACT...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
3UTR TCA 72 bp ATTCCAGTATTCCAGAGGCAGGGGTGGGTGGATCTCTaGGTTGGAGGCCAGCCTGGCCTATCCAGTAAGTTC +
Preference number: 3 (lower is better)
Translates to: IPVFQRQGWVDL*VGGQPGLSSKF
Trigger: GAACTTACTGGATAGGCCAGGCTGGCCTCCAACTCAGAGATCCACCCACCCCTGCCTCTGGAATACTGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR TCA 72 bp CCAGGTCAGCCGACGGCCTCCACACACAAGCACAGGTaGGCACAACTGCACACAAGCAAGTTGAAAAGTACT +
Preference number: 3 (lower is better)
Translates to: PGQPTASTHKHR*AQLHTSKLKST
Trigger: AGTACTTTTCAACTTGCTTGTGTGCAGTTGTGCTCACCTGTGCTTGTGTGTGGAGGCCGTCGGCTGACCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR CAA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCGTAGACACCATCCCATaGAAGGATTCAAATAAAGGT +
Preference number: 3 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGVDTIP*KDSNKG
Trigger: ACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR GCA 72 bp ACTGCTGGCAGCTCTGAGTCCCATACTGAGACACATTaGCAGTCACACCAACACCAACCCTTGCAGACAGTT +
Preference number: 3 (lower is better)
Translates to: TAGSSESHTETH*QSHQHQPLQTV
Trigger: AACTGTCTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGAGCTGCCAGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR CAA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAGAGAGCCGCTCTGCTTaGGGGACAACCAGGGACCTG +
Preference number: 3 (lower is better)
Translates to: DHSISNSAGMELGFSPSPESRSA*GTTRDL
Trigger: CAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTC...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CAA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGGGTGGATCTCTGAGTaGGAGGCCAGCCTGGCCTAT +
Preference number: 3 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSGWISE*EASLAY
Trigger: ATAGGCCAGGCTGGCCTCCAACTCAGAGATCCACCC...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR GCA 72 bp GTGTCGAATCCTAGCTTAATATTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTGATACGTCGGTTCTCC +
Preference number: 3 (lower is better)
Translates to: VSNPSLILNRLF*SAEMCVIRRFS
Trigger: GGAGAACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAGCTAGGATTCGACAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR CCA 72 bp ACACATCTACATTCATGCAAGATGCCTGCCATGCTCTaGCTAGCCCTTGCCCTGATCTCTTCTGGCATCAGA +
Preference number: 3 (lower is better)
Translates to: THLHSCKMPAML*LALALISSGIR
Trigger: TCTGATGCCAGAAGAGATCAGGGCAAGGGCTAGCCAGAGCATGGCAGGCATCTTGCATGAATGTAGATGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR TCA 72 bp ACAAGCACAGGTGAGCACAACTGCACACAAGCAAGTTaGAAAGTACTCAAAGGGCCGGGTGGTGGTGACATA +
Preference number: 3 (lower is better)
Translates to: TSTGEHNCTQAS*KVLKGPGGGDI
Trigger: TATGTCACCACCACCCGGCCCTTTGAGTACTTTTCAACTTGCTTGTGTGCAGTTGTGCTCACCTGTGCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR GCA 72 bp ACTAGTGCAAAGGCAAAGAGAGGAGATCTCCTGCTCTaGCTCTCTGCTCAGGAACTAAGGATGGTACCCTTT +
Preference number: 3 (lower is better)
Translates to: TSAKAKRGDLLL*LSAQELRMVPF
Trigger: AAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCCTCTCTTTGCCTTTGCACTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGTAGACACCATCCCATaGAAGGATTCAAATAAAGGT +
Preference number: 3 (lower is better)
Translates to: PKEVVSATLGTFQICRETVDTIP*KDSNKG
Trigger: ACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGAGGGTTGTATGGAGTaGAGATCCCCTGATAGTCGC +
Preference number: 3 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTEGCME*RSPDSR
Trigger: GCGACTATCAGGGGATCTCAACTCCATACAACCCTC...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR GCA 72 bp AAAGGCAAAGAGAGGAGATCTCCTGCTCTGCCTCTCTaGTCAGGAACTAAGGATGGTACCCTTTATCCAAAG +
Preference number: 3 (lower is better)
Translates to: KGKERRSPALPL*SGTKDGTLYPK
Trigger: CTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCCTCTCTTTGCCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGGAGGGTTGTATGGAGTaGAGATCCCCTGATAGTCGC +
Preference number: 3 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQEGCME*RSPDSR
Trigger: GCGACTATCAGGGGATCTCAACTCCATACAACCCTC...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR-3UTR CAA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCGTAGACACCATCCCATaGAAGGATTCAAATAAAGGT +
Preference number: 3 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLVDTIP*KDSNKG
Trigger: ACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR TCA 72 bp AGCAAGTTGAAAAGTACTCAAAGGGCCGGGTGGTGGTaGCATATGCCTTTAATTCCAGTATTCCAGAGGCAG +
Preference number: 3 (lower is better)
Translates to: SKLKSTQRAGWW*HMPLIPVFQRQ
Trigger: CTGCCTCTGGAATACTGGAATTAAAGGCATATGTCACCACCACCCGGCCCTTTGAGTACTTTTCAACTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR TCA 72 bp CCCTCTGTTATTAAAGGGAGGTCCAAAGATGGGATATaGGTCACCAGGGATCATAGCATTAGCAACAGTGCA +
Preference number: 3 (lower is better)
Translates to: PSVIKGRSKDGI*VTRDHSISNSA
Trigger: TGCACTGTTGCTAATGCTATGATCCCTGGTGACTCATATCCCATCTTTGGACCTCCCTTTAATAACAGAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp AAGCAAGTTGAAAAGTACTCAAAGGGCCGGGTGGTGGTGACATATGCCTTTAATCACCAACACCAACCCTaGCAGACAGTTTTTGCTTTT +
Preference number: 3 (lower is better)
Translates to: KQVEKYSKGRVVVTYAFNHQHQP*QTVFAF
Trigger: AAAAGCAAAAACTGTCTGCAAGGGTTGGTGTTGGTG...ATTAAAGGCATATGTCACCACCACCCGGCCCTTTGAGTACTTTTCAACTTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR-3UTR CAA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAAGTTGTTCCTGGAGCTaGGAAACTTTCACCAGGATT +
Preference number: 3 (lower is better)
Translates to: DHSISNSAGMELGFSPSPSCSWS*ETFTRI
Trigger: AATCCTGGTGAAAGTTTCCAAGCTCCAGGAACAACT...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR-3UTR CAA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAACCTTGCAGACAGTTTTaGCTTTTATTGATGAAGAAC +
Preference number: 3 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKPCRQF*LLLMKN
Trigger: GTTCTTCATCAATAAAAGCAAAAACTGTCTGCAAGG...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR CCA 72 bp GCCAGGATTTTTAGAAGCGTGTTCACAAGTTGTTCCTaGAGCTTGGAAACTTTCACCAGGATTATAATGGTC +
Preference number: 3 (lower is better)
Translates to: ARIFRSVFTSCS*SLETFTRIIMV
Trigger: GACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACAACTTGTGAACACGCTTCTAAAAATCCTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCGCAGGCCACCCGCGCTaGGCCGGGGACTCGGATCCT +
Preference number: 4 (lower is better)
Translates to: YNGLPRVPSVTARVACSGAGHPR*AGDSDP
Trigger: AGGATCCGAGTCCCCGGCGCAGCGCGGGTGGCCTGC...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGTGGGAGGAGCCAATGTaGCTGGGCCTGGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: GLPRVPSVTARVACSGTRWEEPM*LGLEVA
Trigger: GGCCACCTCCAGGCCCAGCCACATTGGCTCCTCCCA...CCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCGCCGCTCACTGCCGCTaGAGGCTGGAGGCGAGAGCC +
Preference number: 4 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGAAHCR*RLEARA
Trigger: GGCTCTCGCCTCCAGCCTCCAGCGGCAGTGAGCGGC...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCGCAGGCCACCCGCGCTaGGCCGGGGACTCGGATCCT +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASAGHPR*AGDSDP
Trigger: AGGATCCGAGTCCCCGGCGCAGCGCGGGTGGCCTGC...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCGCAGGCCACCCGCGCTaGGCCGGGGACTCGGATCCT +
Preference number: 4 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPAGHPR*AGDSDP
Trigger: AGGATCCGAGTCCCCGGCGCAGCGCGGGTGGCCTGC...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCATCTTCTGGGGGCAGCTaGAGGGACGAAGGACTGGGC +
Preference number: 4 (lower is better)
Translates to: RVPSVTARVACSGTRLGSSSGGS*RDEGLG
Trigger: GCCCAGTCCTTCGTCCCTGCAGCTGCCCCCAGAAGA...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCAGGAGCCAATGTGGCTaGGCCTGGAGGTGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVRSQCG*AWRWPG
Trigger: CCCCGGCCACCTCCAGGCCCAGCCACATTGGCTCCT...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACTGCCGCTGGAGGCTaGAGGCGAGAGCCGCTCTGC +
Preference number: 4 (lower is better)
Translates to: YNGLPRVPSVTARVACSGTAAGG*RREPLC
Trigger: GCAGAGCGGCTCTCGCCTCCAGCCTCCAGCGGCAGT...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCATAGTCGCCGCTCACTaGCGCTGGAGGCTGGAGGCG +
Preference number: 4 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVIVAAH*RWRLEA
Trigger: CGCCTCCAGCCTCCAGCGGCAGTGAGCGGCGACTAT...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACGGGGCGGAGCCATTGTaGGGAAGGGAGAGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHGAEPL*GRERGC
Trigger: GCACCCCCTCTCCCTTCCCCACAATGGCTCCGCCCC...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTCTGGCGGAGGCTGTGCAAGCTGGCGGTAGACACCATCCCATTGAAGGATTCAGCCGCTCACTGCCGCTaGAGGCTGGAGGCGAGAGCC +
Preference number: 4 (lower is better)
Translates to: VWRRLCKLAVDTIPLKDSAAHCR*RLEARA
Trigger: GGCTCTCGCCTCCAGCCTCCAGCGGCAGTGAGCGGC...TGAATCCTTCAATGGGATGGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCGTGAGGGGTCATCCCTaGGGAGGAGGAAGACGAGGC +
Preference number: 4 (lower is better)
Translates to: YNGLPRVPSVTARVACSGVRGHP*GGGRRG
Trigger: GCCTCGTCTTCCTCCTCCTCAGGGATGACCCCTCAC...GCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TTGAGGGGGAGACAGGTGGACACTCAGTGCCCCCGAGGGTTGTATGGAGTTGAGGTGTCGGATCGATGCTaGGCGGCCCGAAGTCGGCGA +
Preference number: 4 (lower is better)
Translates to: LRGRQVDTQCPRGLYGVEVSDRC*AARSRR
Trigger: TCGCCGACTTCGGGCCGCGCAGCATCGATCCGACAC...CTCAACTCCATACAACCCTCGGGGGCACTGAGTGTCCACCTGTCTCCCCCTCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGCCTCAGGTTTCCGGTaGTCATCTGCTTCAGACCCC +
Preference number: 4 (lower is better)
Translates to: RVPSVTARVACSGTRLGSASGFR*SSASDP
Trigger: GGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGC...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GTACCCAGGTCAGCCGACGGCCTCCACACACAAGCACAGGTGAGCACAACTGCATCATCTAGGCTGGGCTaGAGCGGCGTCAGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: VPRSADGLHTQAQVSTTASSRLG*SGVRSG
Trigger: GCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGA...TGCAGTTGTGCTCACCTGTGCTTGTGTGTGGAGGCCGTCGGCTGACCTGGGTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCGCACAGGCACCACGCTaGAGAAGAGCTGTTCGCACC +
Preference number: 4 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGAQAPR*RRAVRT
Trigger: GGTGCGAACAGCTCTTCTCCAGCGTGGTGCCTGTGC...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCAGCGGCGTCAGGTCTaGCTGGATCATGTCAGCATT +
Preference number: 4 (lower is better)
Translates to: GLPRVPSVTARVACSGTRQRRQV*LDHVSI
Trigger: AATGCTGACATGATCCAGCCAGACCTGACGCCGCTG...CCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAGGGGCGGAGCCATTGTaGGGAAGGGAGAGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGGAEPL*GRERGC
Trigger: GCACCCCCTCTCCCTTCCCCACAATGGCTCCGCCCC...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGTCAGGATGACCAGGGCCGGGCTGTaGGGTGGGGACAAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: SVTARVACSGTRLGSVRMTRAGL*GGDKGC
Trigger: ACAACCTTTGTCCCCACCCCACAGCCCGGCCCTGGT...CATCCTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTTGTCCCCCAGGGGATaGGGAGGAGGGCTTGCACCT +
Preference number: 4 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRLSPRG*GGGLAP
Trigger: AGGTGCAAGCCCTCCTCCCCATCCCCTGGGGGACAA...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGTTGTCCCCCAGGGGATaGGGAGGAGGGCTTGCACCT +
Preference number: 4 (lower is better)
Translates to: GQLAGEQVGNSTVPARPVLSPRG*GGGLAP
Trigger: AGGTGCAAGCCCTCCTCCCCATCCCCTGGGGGACAA...CACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGAGAGGCCAAGGTGGGTaGACTTGCTTTTTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: GLPRVPSVTARVACSGTRRGQGG*TCFLSP
Trigger: GGGGGACAAAAAGCAAGTCCACCCACCTTGGCCTCT...CCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCAGGAGCCAATGTGGCTaGGCCTGGAGGTGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASRSQCG*AWRWPG
Trigger: CCCCGGCCACCTCCAGGCCCAGCCACATTGGCTCCT...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCAGCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACA +
Preference number: 4 (lower is better)
Translates to: AGEQVGNSTVPARPVRSGSLRLG*ALSVLT
Trigger: TGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGCT...GCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128691.8
3UTR CAA 72 bp GGCACCCCGGTGGCCGGTAGCTGCTGCTGGCACAAGTaGATGGCAGCGTTGAGCTCCTCTATTTCATCCCGC +
Preference number: 4 (lower is better)
Translates to: GTPVAGSCCWHK*MAALSSSISSR
Trigger: GCGGGATGAAATAGAGGAGCTCAACGCTGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCACCGGGGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACGTGAGGGGTCATCCCTaGGGAGGAGGAAGACGAGGC +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHVRGHP*GGGRRG
Trigger: GCCTCGTCTTCCTCCTCCTCAGGGATGACCCCTCAC...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGCAGGAGGGGCTGAGGTaGATGGGAACCTGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRQEGLR*MGTWQR
Trigger: TCTCTGCCAGGTTCCCATTCACCTCAGCCCCTCCTG...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGTTCCAGCCAGGCCAGTaGGGTCTGGCGGAGGCTGTG +
Preference number: 4 (lower is better)
Translates to: GLGESRPVLYKASQFSGRFQPGQ*GLAEAV
Trigger: CACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAA...CCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGTCATCTAGGCTGGGCTaGAGCGGCGTCAGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: SDEDAEHPELPVVQRARPSSRLG*SGVRSG
Trigger: GCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGA...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCGCTGCCCGTTCCTGCTaGAGCATCAGGATGTACTCC +
Preference number: 4 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGAARSC*SIRMYS
Trigger: GGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGC...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTACCCAGGTCAGCCGACGGCCTCCACACACAAGCACAGGTGAGCACAACTGCAAGAGGGAGTCAGCCATaGGGCCAAAGCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: VPRSADGLHTQAQVSTTARGSQP*GQSWGT
Trigger: AGTCCCCCAGCTTTGGCCCCATGGCTGACTCCCTCT...TGCAGTTGTGCTCACCTGTGCTTGTGTGTGGAGGCCGTCGGCTGACCTGGGTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAAGCTCAGAAAGGGGTTaGGATCCAAGGGTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: RVPSVTARVACSGTRLGSSSERG*DPRVQS
Trigger: GCTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCT...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAACCAGGGCCGGGCTGTaGGGTGGGGACAAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSATRAGL*GGDKGC
Trigger: ACAACCTTTGTCCCCACCCCACAGCCCGGCCCTGGT...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGACCAGGGCCGGGCTGTaGGGTGGGGACAAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: SDEDAEHPELPVVQRARPTRAGL*GGDKGC
Trigger: ACAACCTTTGTCCCCACCCCACAGCCCGGCCCTGGT...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGCGAGCGCCACCAATGTaGGCCTCTGTGTTGGCAAGC +
Preference number: 4 (lower is better)
Translates to: GQLAGEQVGNSTVPARPVRAPPM*ASVLAS
Trigger: GCTTGCCAACACAGAGGCCCACATTGGTGGCGCTCG...CACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
3UTR CAA 72 bp GCCGGTAGCTGCTGCTGGCACAAGTTGATGGCAGCGTaGAGCTCCTCTATTTCATCCCGCAGCTGCTGCGCC +
Preference number: 4 (lower is better)
Translates to: AGSCCWHKLMAA*SSSISSRSCCA
Trigger: GGCGCAGCAGCTGCGGGATGAAATAGAGGAGCTCAACGCTGCCATCAACTTGTGCCAGCAGCAGCTACCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACCAGGAGGGGCTGAGGTaGATGGGAACCTGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHQEGLR*MGTWQR
Trigger: TCTCTGCCAGGTTCCCATTCACCTCAGCCCCTCCTG...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGTCAGGATGTACCCTGAGGCACAGTaGAGTGAGGCCCAAAGACGG +
Preference number: 4 (lower is better)
Translates to: SVTARVACSGTRLGSVRMYPEAQ*SEAQRR
Trigger: CCGTCTTTGGGCCTCACTTCACTGTGCCTCAGGGTA...CATCCTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGTGTCGGATCGATGCTaGGCGGCCCGAAGTCGGCGA +
Preference number: 4 (lower is better)
Translates to: QWPQSGSHPIAPHVTSAKVSDRC*AARSRR
Trigger: TCGCCGACTTCGGGCCGCGCAGCATCGATCCGACAC...CTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCTCATCTAGGCTGGGCTaGAGCGGCGTCAGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: DAEHPELPVVQRARPDIVSSRLG*SGVRSG
Trigger: GCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGA...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAGTCGGAGGCTCCAGTaGTTGCTCAGGCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSASRRLQ*LLRLGC
Trigger: GCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACT...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAATAGTCGCCGCTCACTaGCGCTGGAGGCTGGAGGCG +
Preference number: 4 (lower is better)
Translates to: CAACASGHSHQTCPASGQIVAAH*RWRLEA
Trigger: CGCCTCCAGCCTCCAGCGGCAGTGAGCGGCGACTAT...TTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCTTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGLNRLF*SAEMCV
Trigger: CACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAA...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCGCTGCCCGTTCCTGCTaGAGCATCAGGATGTACTCC +
Preference number: 4 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVAARSC*SIRMYS
Trigger: GGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGC...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005507.10
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAGGTGCCCTCTGTGACTaGCCGTGTGGCTTGCTCAGG +
Preference number: 4 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGGALCD*PCGLLR
Trigger: CCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACC...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp GCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCCAGCGGCGTCAGGTCTaGCTGGATCATGTCAGCATT +
Preference number: 4 (lower is better)
Translates to: AGEQVGNSTVPARPVRSGQRRQV*LDHVSI
Trigger: AATGCTGACATGATCCAGCCAGACCTGACGCCGCTG...GCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACAGAGGGAGTCAGCCATaGGGCCAAAGCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHRGSQP*GQSWGT
Trigger: AGTCCCCCAGCTTTGGCCCCATGGCTGACTCCCTCT...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCAGCTCAGAAAGGGGTTaGGATCCAAGGGTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: AGEQVGNSTVPARPVRSGSSERG*DPRVQS
Trigger: GCTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCT...GCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCGGGCTGTGGGGTaGGGACAAAGGTTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNGRAVG*GQRLWV
Trigger: CACCCACAACCTTTGTCCCCACCCCACAGCCCGGCC...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CGAAGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCGGCCGGGCTGTGGGGTaGGGACAAAGGTTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: RREFRTVGRRAGREQYCSGRAVG*GQRLWV
Trigger: CACCCACAACCTTTGTCCCCACCCCACAGCCCGGCC...GGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCTTGTCCCCCAGGGGATaGGGAGGAGGGCTTGCACCT +
Preference number: 4 (lower is better)
Translates to: AEHPELPVVQRARPDIVILSPRG*GGGLAP
Trigger: AGGTGCAAGCCCTCCTCCCCATCCCCTGGGGGACAA...GATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGCAGTGGCAGTGGCAGTaGGACTGGCGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: QWPQSGSHPIAPHVTSAKQWQWQ*DWRWQR
Trigger: CCTCTGCCACCGCCAGTCCCACTGCCACTGCCACTG...CTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGCAGTGGCAGTGGCAGTaGGACTGGCGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: PKEVVSATLGTFQICRETQWQWQ*DWRWQR
Trigger: CCTCTGCCACCGCCAGTCCCACTGCCACTGCCACTG...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCAGTGGCAGTGGCAGTaGGACTGGCGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: NSGQLAGEQVGNSTVPARQWQWQ*DWRWQR
Trigger: CCTCTGCCACCGCCAGTCCCACTGCCACTGCCACTG...CCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACTGGGAGGAGCCAATGTaGCTGGGCCTGGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNWEEPM*LGLEVA
Trigger: GGCCACCTCCAGGCCCAGCCACATTGGCTCCTCCCA...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CGAAGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCTGGGAGGAGCCAATGTaGCTGGGCCTGGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: RREFRTVGRRAGREQYCSWEEPM*LGLEVA
Trigger: GGCCACCTCCAGGCCCAGCCACATTGGCTCCTCCCA...GGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCACTGTCTTCTGAAGCGTaGTTGCTTTGCTCACCTGCG +
Preference number: 4 (lower is better)
Translates to: RVPSVTARVACSGTRLGSLSSEA*LLCSPA
Trigger: CGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAG...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
3UTR CAA 72 bp AGGTGGACACTCAGTGCCCCCGAGGGTTGTATGGAGTaGAGATCCCCTGATAGTCGCCGCTCACTGCCTGTG +
Preference number: 4 (lower is better)
Translates to: RWTLSAPEGCME*RSPDSRRSLPV
Trigger: CACAGGCAGTGAGCGGCGACTATCAGGGGATCTCAACTCCATACAACCCTCGGGGGCACTGAGTGTCCACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp TTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGTCTTCTGGGGGCAGCTaGAGGGACGAAGGACTGGGC +
Preference number: 4 (lower is better)
Translates to: FHQDYNGLPRVPSVTARVSSGGS*RDEGLG
Trigger: GCCCAGTCCTTCGTCCCTGCAGCTGCCCCCAGAAGA...CACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGGCTCTAAGCCATaGACCTTGACAGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASQGSKP*TLTGVG
Trigger: CCCCACCCCTGTCAAGGTGCATGGCTTAGAGCCCTG...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCGGAAGGGAGAGGGGGTaGAGGGCTCTAAGCCATGCA +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASGRERG*RALSHA
Trigger: TGCATGGCTTAGAGCCCTGCACCCCCTCTCCCTTCC...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTGGAAGGGAGAGGGGGTaGAGGGCTCTAAGCCATGCA +
Preference number: 4 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTGRERG*RALSHA
Trigger: TGCATGGCTTAGAGCCCTGCACCCCCTCTCCCTTCC...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGATGGGGAGGAGGGCTTaGACCTGGGTTGCATACCCT +
Preference number: 4 (lower is better)
Translates to: SDEDAEHPELPVVQRARPMGRRA*TWVAYP
Trigger: AGGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCAT...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAGTCGGAGGCTCCAGTaGTTGCTCAGGCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: AEHPELPVVQRARPDIVISRRLQ*LLRLGC
Trigger: GCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACT...GATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCATCAGAAACTGTATCCTaGGGGGACTCTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSASETVS*GDSGGR
Trigger: CCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGA...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGGCGAGAGCCGCTCTaGTTTGGGGACAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTRREPL*FGDNQG
Trigger: TCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTCGCCT...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AGCTGCTGCGCCTCCTCCTGCATAGCTGCCCGTTCCTGCTGCAGCATCAGGATGAAGCACTCGAAGAGGTaGGTGAGTGTCGGATCGATG +
Preference number: 4 (lower is better)
Translates to: SCCASSCIAARSCCSIRMKHSKR*VSVGSM
Trigger: CATCGATCCGACACTCACCCACCTCTTCGAGTGCTT...CATCCTGATGCTGCAGCAGGAACGGGCAGCTATGCAGGAGGAGGCGCAGCAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR CCA 90 bp GTACCCAGGTCAGCCGACGGCCTCCACACACAAGCACAGGTGAGCACAACTGCACACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTT +
Preference number: 4 (lower is better)
Translates to: VPRSADGLHTQAQVSTTAHLPPA*EPGNPL
Trigger: AAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTG...TGCAGTTGTGCTCACCTGTGCTTGTGTGTGGAGGCCGTCGGCTGACCTGGGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCGCACAGGCACCACGCTaGAGAAGAGCTGTTCGCACC +
Preference number: 4 (lower is better)
Translates to: DAEHPELPVVQRARPDIVAQAPR*RRAVRT
Trigger: GGTGCGAACAGCTCTTCTCCAGCGTGGTGCCTGTGC...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAGAGGGAGTCAGCCATaGGGCCAAAGCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: AEHPELPVVQRARPDIVIRGSQP*GQSWGT
Trigger: AGTCCCCCAGCTTTGGCCCCATGGCTGACTCCCTCT...GATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGAGCTCAGAAAGGGGTTaGGATCCAAGGGTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRSSERG*DPRVQS
Trigger: GCTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCT...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCGGGGCGGAGCCATTGTaGGGAAGGGAGAGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: LLLCLSAQELRMVPFIQSGAEPL*GRERGC
Trigger: GCACCCCCTCTCCCTTCCCCACAATGGCTCCGCCCC...GCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGGTCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGGCCGGGCTGTGGGGTaGGGACAAAGGTTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: GSVRMLVEVLSWRREFRTGRAVG*GQRLWV
Trigger: CACCCACAACCTTTGTCCCCACCCCACAGCCCGGCC...TGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGAGGAGCCAATGTGGCTaGGCCTGGAGGTGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQRSQCG*AWRWPG
Trigger: CCCCGGCCACCTCCAGGCCCAGCCACATTGGCTCCT...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCAGAGCCGCTCTGCTTTaGGGACAACCAGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASRAALL*GQPGTW
Trigger: CCAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCT...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAACTGCCGCTGGAGGCTaGAGGCGAGAGCCGCTCTGC +
Preference number: 4 (lower is better)
Translates to: SGSHPIAPHVTSAKAKRGTAAGG*RREPLC
Trigger: GCAGAGCGGCTCTCGCCTCCAGCCTCCAGCGGCAGT...TCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTTGTGTTGGCAAGCCCTaGGAGCTTGAGGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTCVGKP*ELEAGL
Trigger: CAGCCCAGCCTCAAGCTCCCAGGGCTTGCCAACACA...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128691.8
CDS-3UTR TCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGGGGGCGGTAATTGGTaGAGAAATCTGATATCTCCA +
Preference number: 4 (lower is better)
Translates to: RVPSVTARVACSGTRLGSGGGNW*RNLISP
Trigger: TGGAGATATCAGATTTCTTCACCAATTACCGCCCCC...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACCCAGGATCCCACTGCTaGAGAGGGAGTCAGCCATGG +
Preference number: 4 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNPGSHC*RGSQPW
Trigger: CCATGGCTGACTCCCTCTTCAGCAGTGGGATCCTGG...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGCCAGGATCCCACTGCTaGAGAGGGAGTCAGCCATGG +
Preference number: 4 (lower is better)
Translates to: PKEVVSATLGTFQICRETPGSHC*RGSQPW
Trigger: CCATGGCTGACTCCCTCTTCAGCAGTGGGATCCTGG...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGCCAGGATCCCACTGCTaGAGAGGGAGTCAGCCATGG +
Preference number: 4 (lower is better)
Translates to: FHQDYNGLPRVPSVTARVPGSHC*RGSQPW
Trigger: CCATGGCTGACTCCCTCTTCAGCAGTGGGATCCTGG...CACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGCAGGAGGGGCTGAGGTaGATGGGAACCTGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQQEGLR*MGTWQR
Trigger: TCTCTGCCAGGTTCCCATTCACCTCAGCCCCTCCTG...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCTACCCTGAGGCACAGTaGAGTGAGGCCCAAAGACGG +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASYPEAQ*SEAQRR
Trigger: CCGTCTTTGGGCCTCACTTCACTGTGCCTCAGGGTA...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCTACCCTGAGGCACAGTaGAGTGAGGCCCAAAGACGG +
Preference number: 4 (lower is better)
Translates to: AEHPELPVVQRARPDIVIYPEAQ*SEAQRR
Trigger: CCGTCTTTGGGCCTCACTTCACTGTGCCTCAGGGTA...GATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CCCTGGGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGATCTGGTCAAAGCGCTaGTGTGTGATGGGCACCCCG +
Preference number: 4 (lower is better)
Translates to: PWGWGSLGQCSTKPHNLVIWSKR*CVMGTP
Trigger: CGGGGTGCCCATCACACATCAGCGCTTTGACCAGAT...CACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCCCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR TCA 90 bp TCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGATTCCAGCCAGGCCAGTaGGGTCTGGCGGAGGCTGTG +
Preference number: 4 (lower is better)
Translates to: SGSHPIAPHVTSAKAKRGFQPGQ*GLAEAV
Trigger: CACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAA...TCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCGCAGGCCACCCGCGCTaGGCCGGGGACTCGGATCCT +
Preference number: 4 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSAGHPR*AGDSDP
Trigger: AGGATCCGAGTCCCCGGCGCAGCGCGGGTGGCCTGC...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCTGCTCGTGTCGGATCGATGCTaGGCGGCCCGAAGTCGGCGA +
Preference number: 4 (lower is better)
Translates to: PIAPHVTSAKAKRGDLLLVSDRC*AARSRR
Trigger: TCGCCGACTTCGGGCCGCGCAGCATCGATCCGACAC...GAGCAGGAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGTCAGGATGGCATCACCACCTCGATaGGCCGCTTCCAGTAATTAC +
Preference number: 4 (lower is better)
Translates to: SVTARVACSGTRLGSVRMASPPR*AASSNY
Trigger: GTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGC...CATCCTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAATCTTCTGGGGGCAGCTaGAGGGACGAAGGACTGGGC +
Preference number: 4 (lower is better)
Translates to: IPKEVVSATLGTFQICRESSGGS*RDEGLG
Trigger: GCCCAGTCCTTCGTCCCTGCAGCTGCCCCCAGAAGA...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTGGCTCATCTAGGCTGGGCTaGAGCGGCGTCAGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: VRMLVEVLSWRREFRTVGSSRLG*SGVRSG
Trigger: GCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGA...GCCAACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCAGGGCTCTAAGCCATaGACCTTGACAGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: ELPVVQRARPDIVIKHVPQGSKP*TLTGVG
Trigger: CCCCACCCCTGTCAAGGTGCATGGCTTAGAGCCCTG...CGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTTGCTCAGGCTTGGCTaGCCTGAGCAGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHLLRLG*PEQLCK
Trigger: CTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAA...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGGCGAGAGCCGCTCTaGTTTGGGGACAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: CAACASGHSHQTCPASGQRREPL*FGDNQG
Trigger: TCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTCGCCT...TTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTCCAGTTGTGCAGCGTaGGCGTCCGGACATAGTCAT +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHSSCAA*ASGHSH
Trigger: ATGACTATGTCCGGACGCGCACGCTGCACAACTGGA...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTCAGAACTTCCAGTTGTaGAGCGTGCGCGTCCGGACA +
Preference number: 4 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTQNFQL*SVRVRT
Trigger: TGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTG...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp GGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGCAGAACTTCCAGTTGTaGAGCGTGCGCGTCCGGACA +
Preference number: 4 (lower is better)
Translates to: GLGESRPVLYKASQFSGRQNFQL*SVRVRT
Trigger: TGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTG...CCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR CCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAGCACAGGCACCACGCTaGAGAAGAGCTGTTCGCACC +
Preference number: 4 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGAQAPR*RRAVRT
Trigger: GGTGCGAACAGCTCTTCTCCAGCGTGGTGCCTGTGC...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCAGACGAGGCTGGAGATaGCATCTCTGGGGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASRRGWR*HLWGQD
Trigger: ATCCTGGCCCCAGAGATGCCATCTCCAGCCTCGTCT...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGGGGCGGAGCCATTGTaGGGAAGGGAGAGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: LGNFHQDYNGLPRVPSVTGAEPL*GRERGC
Trigger: GCACCCCCTCTCCCTTCCCCACAATGGCTCCGCCCC...AGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGGCCGGGCTGTGGGGTaGGGACAAAGGTTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: SGSHPIAPHVTSAKAKRGGRAVG*GQRLWV
Trigger: CACCCACAACCTTTGTCCCCACCCCACAGCCCGGCC...TCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGAGATCTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAGTGGCAGTGGCAGTaGGACTGGCGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: GDLLLCLSAQELRMVPFIQWQWQ*DWRWQR
Trigger: CCTCTGCCACCGCCAGTCCCACTGCCACTGCCACTG...GATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCTGTTGTCTCTGGCAGTaGCAGTGGCAGTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: DAEHPELPVVQRARPDIVCCLWQ*QWQWDW
Trigger: CCAGTCCCACTGCCACTGCCACTGCCAGAGACAACA...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCAATGTGGCTGGGCCTaGAGGTGGCCGGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLQCGWA*RWPGWC
Trigger: ACACCACCCCGGCCACCTCCAGGCCCAGCCACATTG...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAGGACAACCAGGGACCTaGGAGGAGCCAATGTGGCTG +
Preference number: 4 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGGQPGT*EEPMWL
Trigger: CAGCCACATTGGCTCCTCCCAGGTCCCTGGTTGTCC...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGGACAACCAGGGACCTaGGAGGAGCCAATGTGGCTG +
Preference number: 4 (lower is better)
Translates to: PKEVVSATLGTFQICRETGQPGT*EEPMWL
Trigger: CAGCCACATTGGCTCCTCCCAGGTCCCTGGTTGTCC...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAACCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACA +
Preference number: 4 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGTLRLG*ALSVLT
Trigger: TGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGT...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp GGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGAACCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACA +
Preference number: 4 (lower is better)
Translates to: GWGSLGQCSTKPHNLVAGTLRLG*ALSVLT
Trigger: TGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGT...TCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR TCA 90 bp CCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGT +
Preference number: 4 (lower is better)
Translates to: PQWPQSGSHPIAPHVTSANYPPG*QPQVSG
Trigger: ACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATT...TGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAAATCTGATATCTCCATaGAGTCATCTAGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RVPSVTARVACSGTRLGSNLISP*SHLGWA
Trigger: AGCCCAGCCTAGATGACTTCATGGAGATATCAGATT...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp AGCTGCTGCGCCTCCTCCTGCATAGCTGCCCGTTCCTGCTGCAGCATCAGGATGGGGGGCGGTAATTGGTaGAGAAATCTGATATCTCCA +
Preference number: 4 (lower is better)
Translates to: SCCASSCIAARSCCSIRMGGGNW*RNLISP
Trigger: TGGAGATATCAGATTTCTTCACCAATTACCGCCCCC...CATCCTGATGCTGCAGCAGGAACGGGCAGCTATGCAGGAGGAGGCGCAGCAGCT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp AGCTGCTGCGCCTCCTCCTGCATAGCTGCCCGTTCCTGCTGCAGCATCAGGATGGGACTCTATGTAGTTTaGAGATGTGGGTGTCTGAGG +
Preference number: 4 (lower is better)
Translates to: SCCASSCIAARSCCSIRMGLYVV*RCGCLR
Trigger: CCTCAGACACCCACATCTTCAAACTACATAGAGTCC...CATCCTGATGCTGCAGCAGGAACGGGCAGCTATGCAGGAGGAGGCGCAGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp AGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCCAGGAGGGGCTGAGGTaGATGGGAACCTGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: RTSSCAACASGHSHQTCPQEGLR*MGTWQR
Trigger: TCTCTGCCAGGTTCCCATTCACCTCAGCCCCTCCTG...GGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACGCAGGCCACCCGCGCTaGGCCGGGGACTCGGATCCT +
Preference number: 4 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNAGHPR*AGDSDP
Trigger: AGGATCCGAGTCCCCGGCGCAGCGCGGGTGGCCTGC...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAGTCAGCGAGTCGCTGTaGGGCGAAGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGVSESL*GEDTMK
Trigger: CTTCATGGTGTCTTCGCCGCACAGCGACTCGCTGAC...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ACAGACAGACCGACACACAAGGGAGAAAGTCCCCTTGCCCTGACCCCATTCACAGTCAGCGAGTCGCTGTaGGGCGAAGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: TDRPTHKGESPLALTPFTVSESL*GEDTMK
Trigger: CTTCATGGTGTCTTCGCCGCACAGCGACTCGCTGAC...TGTGAATGGGGTCAGGGCAAGGGGACTTTCTCCCTTGTGTGTCGGTCTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp TGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAGTCAGCGAGTCGCTGTaGGGCGAAGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: CAACASGHSHQTCPASGQVSESL*GEDTMK
Trigger: CTTCATGGTGTCTTCGCCGCACAGCGACTCGCTGAC...TTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGCATCACCACCTCGATaGGCCGCTTCCAGTAATTAC +
Preference number: 4 (lower is better)
Translates to: SDEDAEHPELPVVQRARPASPPR*AASSNY
Trigger: GTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGC...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTTCTTCTGGGGGCAGCTaGAGGGACGAAGGACTGGGC +
Preference number: 4 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSSSGGS*RDEGLG
Trigger: GCCCAGTCCTTCGTCCCTGCAGCTGCCCCCAGAAGA...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TTGAACCGCCTCTTCTGCTCCGCGGAGATGTGTGTGATACGTCGGTTCTCCATCATGGGGAGGAGGGCTTaGACCTGGGTTGCATACCCT +
Preference number: 4 (lower is better)
Translates to: LNRLFCSAEMCVIRRFSIMGRRA*TWVAYP
Trigger: AGGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCAT...GATGGAGAACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp TCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTATAGTCGCCGCTCACTaGCGCTGGAGGCTGGAGGCG +
Preference number: 4 (lower is better)
Translates to: SVRMLVEVLSWRREFRTVIVAAH*RWRLEA
Trigger: CGCCTCCAGCCTCCAGCGGCAGTGAGCGGCGACTAT...AACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGAGTGGCCGGTAGCTGCTaGTGGCACAAGTTGATGGCA +
Preference number: 4 (lower is better)
Translates to: GWGSLGQCSTKPHNLVAGVAGSC*WHKLMA
Trigger: TGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCAC...TCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp AGCTCTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGGTCTGGCGGAGGCTGTaGAAGCTGGCGGTAGACACC +
Preference number: 4 (lower is better)
Translates to: SSESHTETHCQSHQHQPLVWRRL*KLAVDT
Trigger: GGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGAC...CAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCTTCTGAAGCGTGGTTaGTTTGCTCACCTGCGAGCG +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASLLKRG*FAHLRA
Trigger: CGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAG...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCACCAGGCTCTCCAGATaGCGTTGTTCAGCCGGATCT +
Preference number: 4 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPTRLSR*RCSAGS
Trigger: AGATCCGGCTGAACAACGCCATCTGGAGAGCCTGGT...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTCTGGCGGAGGCTGTGCAAGCTGGCGGTAGACACCATCCCATTGAAGGATTCACACGAAACCACACACTaGGCTCTTCCTCCGTTGCAC +
Preference number: 4 (lower is better)
Translates to: VWRRLCKLAVDTIPLKDSHETTH*ALPPLH
Trigger: GTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTG...TGAATCCTTCAATGGGATGGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGTAGCTGCTGCTGGCACAAGTTGATGGCAGCGTTGAGCTCCTCTATTTCATCCGCACAGGCACCACGCTaGAGAAGAGCTGTTCGCACC +
Preference number: 4 (lower is better)
Translates to: GSCCWHKLMAALSSSISSAQAPR*RRAVRT
Trigger: GGTGCGAACAGCTCTTCTCCAGCGTGGTGCCTGTGC...GGATGAAATAGAGGAGCTCAACGCTGCCATCAACTTGTGCCAGCAGCAGCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR CCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAGCACAGGCACCACGCTaGAGAAGAGCTGTTCGCACC +
Preference number: 4 (lower is better)
Translates to: IPKEVVSATLGTFQICREAQAPR*RRAVRT
Trigger: GGTGCGAACAGCTCTTCTCCAGCGTGGTGCCTGTGC...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCCAGCGGCGTCAGGTCTaGCTGGATCATGTCAGCATT +
Preference number: 4 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPQRRQV*LDHVSI
Trigger: AATGCTGACATGATCCAGCCAGACCTGACGCCGCTG...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCAGACGAGGCTGGAGATaGCATCTCTGGGGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: REFRTVGRRAGREQYCSSRRGWR*HLWGQD
Trigger: ATCCTGGCCCCAGAGATGCCATCTCCAGCCTCGTCT...GCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGACGGTCCAGGAGCAGGTaGGATCTTGGTCTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGRSRSR*DLGLRV
Trigger: GACCCTAAGACCAAGATCCCACCTGCTCCTGGACCG...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ACAGACAGACCGACACACAAGGGAGAAAGTCCCCTTGCCCTGACCCCATTCACACGGTCCAGGAGCAGGTaGGATCTTGGTCTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: TDRPTHKGESPLALTPFTRSRSR*DLGLRV
Trigger: GACCCTAAGACCAAGATCCCACCTGCTCCTGGACCG...TGTGAATGGGGTCAGGGCAAGGGGACTTTCTCCCTTGTGTGTCGGTCTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
CDS-3UTR CCA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTACCAGGGCCGGGCTGTaGGGTGGGGACAAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSTRAGL*GGDKGC
Trigger: ACAACCTTTGTCCCCACCCCACAGCCCGGCCCTGGT...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGATACCCATGGGGCAGATaGTCTACAGAGAAGGGGACG +
Preference number: 4 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGYPWGR*STEKGT
Trigger: CGTCCCCTTCTCTGTAGACCATCTGCCCCATGGGTA...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGAGATCTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCTTGTCCCCCAGGGGATaGGGAGGAGGGCTTGCACCT +
Preference number: 4 (lower is better)
Translates to: GDLLLCLSAQELRMVPFILSPRG*GGGLAP
Trigger: AGGTGCAAGCCCTCCTCCCCATCCCCTGGGGGACAA...GATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCAGAGGCCAAGGTGGGTaGACTTGCTTTTTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPRGQGG*TCFLSP
Trigger: GGGGGACAAAAAGCAAGTCCACCCACCTTGGCCTCT...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACAGGGGTTGTTGTCTCTaGCAGTGGCAGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNRGCCL*QWQWQW
Trigger: CCACTGCCACTGCCACTGCCAGAGACAACAACCCCT...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CGAAGGGAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGGGGTTGTTGTCTCTaGCAGTGGCAGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: RREFRTVGRRAGREQYCSRGCCL*QWQWQW
Trigger: CCACTGCCACTGCCACTGCCAGAGACAACAACCCCT...GGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGAGGGGTTGTTGTCTCTaGCAGTGGCAGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQRGCCL*QWQWQW
Trigger: CCACTGCCACTGCCACTGCCAGAGACAACAACCCCT...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATAGAGCCGCTCTGCTTTaGGGACAACCAGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: CASGHSHQTCPASGQSADRAALL*GQPGTW
Trigger: CCAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCT...ATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CAGGATCGGTCTTCTATGTCACCTTTCACTGCTGGCAGCTCTGAGTCCCATACTCAGGCCAGTGAGGTCTaGCGGAGGCTGTGCAAGCTG +
Preference number: 4 (lower is better)
Translates to: QDRSSMSPFTAGSSESHTQASEV*RRLCKL
Trigger: CAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTG...AGTATGGGACTCAGAGCTGCCAGCAGTGAAAGGTGACATAGAAGACCGATCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp CCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCTGCTCCCCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACA +
Preference number: 4 (lower is better)
Translates to: PIAPHVTSAKAKRGDLLLPLRLG*ALSVLT
Trigger: TGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGG...GAGCAGGAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGTCTGGCGGAGGCAATCTGATATCTCCATaGAGTCATCTAGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: EQVGNSTVPARPVRSGGGNLISP*SHLGWA
Trigger: AGCCCAGCCTAGATGACTTCATGGAGATATCAGATT...GCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GTGACATATGCCTTTAATTCCAGTATTCCAGAGGCAGGGGTGGGTGGATCTCTGGTGAGGGGTCATCCCTaGGGAGGAGGAAGACGAGGC +
Preference number: 4 (lower is better)
Translates to: VTYAFNSSIPEAGVGGSLVRGHP*GGGRRG
Trigger: GCCTCGTCTTCCTCCTCCTCAGGGATGACCCCTCAC...CAGAGATCCACCCACCCCTGCCTCTGGAATACTGGAATTAAAGGCATATGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR TCA 90 bp TCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTGTGAGGGGTCATCCCTaGGGAGGAGGAAGACGAGGC +
Preference number: 4 (lower is better)
Translates to: SVRMLVEVLSWRREFRTVVRGHP*GGGRRG
Trigger: GCCTCGTCTTCCTCCTCCTCAGGGATGACCCCTCAC...AACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TGTTCCTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCGTGAGGGGTCATCCCTaGGGAGGAGGAAGACGAGGC +
Preference number: 4 (lower is better)
Translates to: CSWSLETFTRIIMVSPGCVRGHP*GGGRRG
Trigger: GCCTCGTCTTCCTCCTCCTCAGGGATGACCCCTCAC...GCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATTACCCTGAGGCACAGTaGAGTGAGGCCCAAAGACGG +
Preference number: 4 (lower is better)
Translates to: CASGHSHQTCPASGQSADYPEAQ*SEAQRR
Trigger: CCGTCTTTGGGCCTCACTTCACTGTGCCTCAGGGTA...ATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGCCGCGGAGATGTGTGTaGTACGTCGGTTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQPRRCV*YVGSPS
Trigger: AGATGGAGAACCGACGTATCACACACATCTCCGCGG...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTGGCGTCAGCGAGTCGCTGTaGGGCGAAGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: VRMLVEVLSWRREFRTVGVSESL*GEDTMK
Trigger: CTTCATGGTGTCTTCGCCGCACAGCGACTCGCTGAC...GCCAACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAAGTGTCGGATCGATGCTaGGCGGCCCGAAGTCGGCGA +
Preference number: 4 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKVSDRC*AARSRR
Trigger: TCGCCGACTTCGGGCCGCGCAGCATCGATCCGACAC...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGGTCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGCCTCAGGTTTCCGGTaGTCATCTGCTTCAGACCCC +
Preference number: 4 (lower is better)
Translates to: GSVRMLVEVLSWRREFRTASGFR*SSASDP
Trigger: GGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGC...TGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCAGGGCTCTAAGCCATaGACCTTGACAGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLQGSKP*TLTGVG
Trigger: CCCCACCCCTGTCAAGGTGCATGGCTTAGAGCCCTG...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGGGAAGGGAGAGGGGGTaGAGGGCTCTAAGCCATGCA +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQGRERG*RALSHA
Trigger: TGCATGGCTTAGAGCCCTGCACCCCCTCTCCCTTCC...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAATGGGGAGGAGGGCTTaGACCTGGGTTGCATACCCT +
Preference number: 4 (lower is better)
Translates to: IPKEVVSATLGTFQICREMGRRA*TWVAYP
Trigger: AGGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCAT...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCTGCTCAGTCGGAGGCTCCAGTaGTTGCTCAGGCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: PIAPHVTSAKAKRGDLLLSRRLQ*LLRLGC
Trigger: GCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACT...GAGCAGGAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGATTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: GWGSLGQCSTKPHNLVAGLNRLF*SAEMCV
Trigger: CACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAA...TCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp TTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGCCCGTGTGTTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: FHQDYNGLPRVPSVTARVLNRLF*SAEMCV
Trigger: CACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAA...CACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCCTGGGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGATAGCTGCCCGTTCCTaGTGCAGCATCAGGATGTAC +
Preference number: 4 (lower is better)
Translates to: PWGWGSLGQCSTKPHNLVIAARS*CSIRMY
Trigger: GTACATCCTGATGCTGCAGCAGGAACGGGCAGCTAT...CACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCCCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp GGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGAATTTCATCCCGCAGCTaGTGCGCCTCCTCCTGCATA +
Preference number: 4 (lower is better)
Translates to: GWGSLGQCSTKPHNLVAGISSRS*CASSCI
Trigger: TATGCAGGAGGAGGCGCAGCAGCTGCGGGATGAAAT...TCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp TCCCTGGGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTTCCAGTTGTGCAGCGTaGGCGTCCGGACATAGTCAT +
Preference number: 4 (lower is better)
Translates to: SLGLGESRPVLYKASQFSSSCAA*ASGHSH
Trigger: ATGACTATGTCCGGACGCGCACGCTGCACAACTGGA...ACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCCCAGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR CCA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAGCTCAGAAAGGGGTTaGGATCCAAGGGTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGSSERG*DPRVQS
Trigger: GCTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCT...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTGGCCGGTCCAGGAGCAGGTaGGATCTTGGTCTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: VRMLVEVLSWRREFRTVGRSRSR*DLGLRV
Trigger: GACCCTAAGACCAAGATCCCACCTGCTCCTGGACCG...GCCAACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGTACCCATGGGGCAGATaGTCTACAGAGAAGGGGACG +
Preference number: 4 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQYPWGR*STEKGT
Trigger: CGTCCCCTTCTCTGTAGACCATCTGCCCCATGGGTA...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGAGAGGCCAAGGTGGGTaGACTTGCTTTTTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: ELPVVQRARPDIVIKHVPRGQGG*TCFLSP
Trigger: GGGGGACAAAAAGCAAGTCCACCCACCTTGGCCTCT...CGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCTGGCAGAGGCCAAGGTaGGTGGACTTGCTTTTTGTC +
Preference number: 4 (lower is better)
Translates to: AEHPELPVVQRARPDIVIWQRPR*VDLLFV
Trigger: GACAAAAAGCAAGTCCACCCACCTTGGCCTCTGCCA...GATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAACAGTGGCAGTGGCAGTaGGACTGGCGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKQWQWQ*DWRWQR
Trigger: CCTCTGCCACCGCCAGTCCCACTGCCACTGCCACTG...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATTGTTGTCTCTGGCAGTaGCAGTGGCAGTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: CASGHSHQTCPASGQSADCCLWQ*QWQWDW
Trigger: CCAGTCCCACTGCCACTGCCACTGCCAGAGACAACA...ATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAACAATGTGGCTGGGCCTaGAGGTGGCCGGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKQCGWA*RWPGWC
Trigger: ACACCACCCCGGCCACCTCCAGGCCCAGCCACATTG...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCAGAGGACAACCAGGGACCTaGGAGGAGCCAATGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPILRHIASHTNTNPCRGQPGT*EEPMWL
Trigger: CAGCCACATTGGCTCCTCCCAGGTCCCTGGTTGTCC...TCTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp AAGCAAGTTGAAAAGTACTCAAAGGGCCGGGTGGTGGTGACATATGCCTTTAATGCCGCTCACTGCCGCTaGAGGCTGGAGGCGAGAGCC +
Preference number: 4 (lower is better)
Translates to: KQVEKYSKGRVVVTYAFNAAHCR*RLEARA
Trigger: GGCTCTCGCCTCCAGCCTCCAGCGGCAGTGAGCGGC...ATTAAAGGCATATGTCACCACCACCCGGCCCTTTGAGTACTTTTCAACTTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp GGAGATCTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCGAGCGCCACCAATGTaGGCCTCTGTGTTGGCAAGC +
Preference number: 4 (lower is better)
Translates to: GDLLLCLSAQELRMVPFIRAPPM*ASVLAS
Trigger: GCTTGCCAACACAGAGGCCCACATTGGTGGCGCTCG...GATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGT +
Preference number: 4 (lower is better)
Translates to: ELPVVQRARPDIVIKHVPNYPPG*QPQVSG
Trigger: ACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATT...CGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GGCTGGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTGTCGAATCCTAGCTTAGGACTCTATGTAGTTTaGAGATGTGGGTGTCTGAGG +
Preference number: 4 (lower is better)
Translates to: GWALSVLTSPCRVSNPSLGLYVV*RCGCLR
Trigger: CCTCAGACACCCACATCTTCAAACTACATAGAGTCC...TAAGCTAGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp TATGCCTTTAATTCCAGTATTCCAGAGGCAGGGGTGGGTGGATCTCTGAGTTGGCAGGAGGGGCTGAGGTaGATGGGAACCTGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: YAFNSSIPEAGVGGSLSWQEGLR*MGTWQR
Trigger: TCTCTGCCAGGTTCCCATTCACCTCAGCCCCTCCTG...CCAACTCAGAGATCCACCCACCCCTGCCTCTGGAATACTGGAATTAAAGGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR TCA 90 bp CCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCTGCTCATCTGGTCAAAGCGCTaGTGTGTGATGGGCACCCCG +
Preference number: 4 (lower is better)
Translates to: PIAPHVTSAKAKRGDLLLIWSKR*CVMGTP
Trigger: CGGGGTGCCCATCACACATCAGCGCTTTGACCAGAT...GAGCAGGAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGTGTCGGATCGATGCTaGGCGGCCCGAAGTCGGCGA +
Preference number: 4 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTVSDRC*AARSRR
Trigger: TCGCCGACTTCGGGCCGCGCAGCATCGATCCGACAC...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCGCCTCAGGTTTCCGGTaGTCATCTGCTTCAGACCCC +
Preference number: 4 (lower is better)
Translates to: LLLCLSAQELRMVPFIQSASGFR*SSASDP
Trigger: GGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGC...GCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGGCATCACCACCTCGATaGGCCGCTTCCAGTAATTAC +
Preference number: 4 (lower is better)
Translates to: ELPVVQRARPDIVIKHVPASPPR*AASSNY
Trigger: GTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGC...CGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCTTCTGGGGGCAGCTaGAGGGACGAAGGACTGGGC +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLSSGGS*RDEGLG
Trigger: GCCCAGTCCTTCGTCCCTGCAGCTGCCCCCAGAAGA...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CTTAATATTGAACCGCCTCTTCTGCTCCGCGGAGATGTGTGTGATACGTCGGTTGGAAGGGAGAGGGGGTaGAGGGCTCTAAGCCATGCA +
Preference number: 4 (lower is better)
Translates to: LNIEPPLLLRGDVCDTSVGRERG*RALSHA
Trigger: TGCATGGCTTAGAGCCCTGCACCCCCTCTCCCTTCC...AACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp GGGTCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACATTGCTCAGGCTTGGCTaGCCTGAGCAGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: GSVRMLVEVLSWRREFRTLLRLG*PEQLCK
Trigger: CTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAA...TGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCTCAGAAACTGTATCCTaGGGGGACTCTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLSETVS*GDSGGR
Trigger: CCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGA...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGTCAGAAACTGTATCCTaGGGGGACTCTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: ELGNFHQDYNGLPRVPSVSETVS*GDSGGR
Trigger: CCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGA...CACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCCTGGGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGCTTCTGAAGCGTGGTTaGTTTGCTCACCTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: PWGWGSLGQCSTKPHNLVLLKRG*FAHLEA
Trigger: AGCCTCAAGGTGAGCAAAGCAACCACGCTTCAGAAG...CACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCCCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp AGCTCTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGGTGGCCGGTAGCTGCTaGTGGCACAAGTTGATGGCA +
Preference number: 4 (lower is better)
Translates to: SSESHTETHCQSHQHQPLVAGSC*WHKLMA
Trigger: TGCCATCAACTTGTGCCAGCAGCAGCTACCGGCCAC...CAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp AGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCCACGAAACCACACACTaGGCTCTTCCTCCGTTGCAC +
Preference number: 4 (lower is better)
Translates to: RTSSCAACASGHSHQTCPHETTH*ALPPLH
Trigger: GTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTG...GGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGGTCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACACACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTT +
Preference number: 4 (lower is better)
Translates to: GSVRMLVEVLSWRREFRTHLPPA*EPGNPL
Trigger: AAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTG...TGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAACAGCGGCGTCAGGTCTaGCTGGATCATGTCAGCATT +
Preference number: 4 (lower is better)
Translates to: IPKEVVSATLGTFQICREQRRQV*LDHVSI
Trigger: AATGCTGACATGATCCAGCCAGACCTGACGCCGCTG...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCAGAGACGAGGCTGGAGATaGCATCTCTGGGGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: SESHTETHCQSHQHQPLQRRGWR*HLWGQD
Trigger: ATCCTGGCCCCAGAGATGCCATCTCCAGCCTCGTCT...CTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCAGACGAGGCTGGAGATaGCATCTCTGGGGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLRRGWR*HLWGQD
Trigger: ATCCTGGCCCCAGAGATGCCATCTCCAGCCTCGTCT...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACGGGGCGGAGCCATTGTaGGGAAGGGAGAGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNGAEPL*GRERGC
Trigger: GCACCCCCTCTCCCTTCCCCACAATGGCTCCGCCCC...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCACCAGGGCCGGGCTGTaGGGTGGGGACAAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLTRAGL*GGDKGC
Trigger: ACAACCTTTGTCCCCACCCCACAGCCCGGCCCTGGT...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGTGGCAGAGGCCAAGGTaGGTGGACTTGCTTTTTGTC +
Preference number: 4 (lower is better)
Translates to: PKEVVSATLGTFQICRETWQRPR*VDLLFV
Trigger: GACAAAAAGCAAGTCCACCCACCTTGGCCTCTGCCA...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCTGTTGTCTCTGGCAGTaGCAGTGGCAGTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: LLLCLSAQELRMVPFIQSCCLWQ*QWQWDW
Trigger: CCAGTCCCACTGCCACTGCCACTGCCAGAGACAACA...GCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTAGAGCCGCTCTGCTTTaGGGACAACCAGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: SVRMLVEVLSWRREFRTVRAALL*GQPGTW
Trigger: CCAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCT...AACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAACTGCCGCTGGAGGCTaGAGGCGAGAGCCGCTCTGC +
Preference number: 4 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSTAAGG*RREPLC
Trigger: GCAGAGCGGCTCTCGCCTCCAGCCTCCAGCGGCAGT...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCCAGGAGGGGGCGGTAATTGGTaGAGAAATCTGATATCTCCA +
Preference number: 4 (lower is better)
Translates to: GECNTWNLPDLQGNGQPGGGGNW*RNLISP
Trigger: TGGAGATATCAGATTTCTTCACCAATTACCGCCCCC...TCCTGGCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCGGACTCTATGTAGTTTaGAGATGTGGGTGTCTGAGG +
Preference number: 4 (lower is better)
Translates to: EVVSATLGTFQICRETASGLYVV*RCGCLR
Trigger: CCTCAGACACCCACATCTTCAAACTACATAGAGTCC...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCGGACTCTATGTAGTTTaGAGATGTGGGTGTCTGAGG +
Preference number: 4 (lower is better)
Translates to: DAEHPELPVVQRARPDIVGLYVV*RCGCLR
Trigger: CCTCAGACACCCACATCTTCAAACTACATAGAGTCC...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAACCAGGATCCCACTGCTaGAGAGGGAGTCAGCCATGG +
Preference number: 4 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKPGSHC*RGSQPW
Trigger: CCATGGCTGACTCCCTCTTCAGCAGTGGGATCCTGG...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TCTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCAGCCGCGGAGATGTGTGTaGTACGTCGGTTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: SESHTETHCQSHQHQPLQPRRCV*YVGSPS
Trigger: AGATGGAGAACCGACGTATCACACACATCTCCGCGG...CTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp ACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGTCATCTAGGCTGGGCTaGAGCGGCGTCAGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: TIPLKDSNKGRMRMLNTQSSRLG*SGVRSG
Trigger: GCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGA...CTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGAAGGTATGCTGCCCGTTCCTGCTaGAGCATCAGGATGTACTCC +
Preference number: 4 (lower is better)
Translates to: GSLGQCSTKPHNLVAGRYAARSC*SIRMYS
Trigger: GGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGC...ATACCTTCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp AGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCATAGCTGCCCGTTCCTaGTGCAGCATCAGGATGTAC +
Preference number: 4 (lower is better)
Translates to: RTSSCAACASGHSHQTCPIAARS*CSIRMY
Trigger: GTACATCCTGATGCTGCAGCAGGAACGGGCAGCTAT...GGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTGGCAAGCACTCGAAGAGGTaGGTGAGTGTCGGATCGATG +
Preference number: 4 (lower is better)
Translates to: VRMLVEVLSWRREFRTVGKHSKR*VSVGSM
Trigger: CATCGATCCGACACTCACCCACCTCTTCGAGTGCTT...GCCAACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCCACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTT +
Preference number: 4 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLHLPPA*EPGNPL
Trigger: AAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTG...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACGGCCGGGCTGTGGGGTaGGGACAAAGGTTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNGRAVG*GQRLWV
Trigger: CACCCACAACCTTTGTCCCCACCCCACAGCCCGGCC...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGAGATCTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCTACCCATGGGGCAGATaGTCTACAGAGAAGGGGACG +
Preference number: 4 (lower is better)
Translates to: GDLLLCLSAQELRMVPFIYPWGR*STEKGT
Trigger: CGTCCCCTTCTCTGTAGACCATCTGCCCCATGGGTA...GATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCTTGTCCCCCAGGGGATaGGGAGGAGGGCTTGCACCT +
Preference number: 4 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSLSPRG*GGGLAP
Trigger: AGGTGCAAGCCCTCCTCCCCATCCCCTGGGGGACAA...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTTGTTGTCTCTGGCAGTaGCAGTGGCAGTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: LGNFHQDYNGLPRVPSVTCCLWQ*QWQWDW
Trigger: CCAGTCCCACTGCCACTGCCACTGCCAGAGACAACA...AGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CAA 72 bp CGGAGGCTGTGCAAGCTGGCGGTAGACACCATCCCATaGAAGGATTCAAATAAAGGTCGGATGAGGATGCTG +
Preference number: 4 (lower is better)
Translates to: RRLCKLAVDTIP*KDSNKGRMRML
Trigger: CAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTACCGCCAGCTTGCACAGCCTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CAA 72 bp TCCGCGGAGATGTGTGTGATACGTCGGTTCTCCATCTaGTTGTTGTCTACACGACCCCGGCTTAGGACAGTT +
Preference number: 4 (lower is better)
Translates to: SAEMCVIRRFSI*LLSTRPRLRTV
Trigger: AACTGTCCTAAGCCGGGGTCGTGTAGACAACAACAAGATGGAGAACCGACGTATCACACACATCTCCGCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
3UTR CAA 72 bp ACAAGTCCGTGCAGGGTGTCGAATCCTAGCTTAATATaGAACCGCCTCTTCTGCTCCGCGGAGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: TSPCRVSNPSLI*NRLFCSAEMCV
Trigger: CACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAGCTAGGATTCGACACCCTGCACGGACTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGGGGCGGTAATTGGTaGAGAAATCTGATATCTCCA +
Preference number: 4 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNGGGNW*RNLISP
Trigger: TGGAGATATCAGATTTCTTCACCAATTACCGCCCCC...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GAATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGGACTCTATGTAGTTTaGAGATGTGGGTGTCTGAGG +
Preference number: 4 (lower is better)
Translates to: EFRTVGRRAGREQYCSSQGLYVV*RCGCLR
Trigger: CCTCAGACACCCACATCTTCAAACTACATAGAGTCC...CTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGAAGGTATCCGCGGAGATGTGTGTaGTACGTCGGTTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: GSLGQCSTKPHNLVAGRYPRRCV*YVGSPS
Trigger: AGATGGAGAACCGACGTATCACACACATCTCCGCGG...ATACCTTCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR GCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCGCCTCAGGTTTCCGGTaGTCATCTGCTTCAGACCCC +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLASGFR*SSASDP
Trigger: GGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGC...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CAGGATCGGTCTTCTATGTCACCTTTCACTGCTGGCAGCTCTGAGTCCCATACTGCATCACCACCTCGATaGGCCGCTTCCAGTAATTAC +
Preference number: 4 (lower is better)
Translates to: QDRSSMSPFTAGSSESHTASPPR*AASSNY
Trigger: GTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGC...AGTATGGGACTCAGAGCTGCCAGCAGTGAAAGGTGACATAGAAGACCGATCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGGCATCACCACCTCGATaGGCCGCTTCCAGTAATTAC +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQASPPR*AASSNY
Trigger: GTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGC...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TTGAGGGGGAGACAGGTGGACACTCAGTGCCCCCGAGGGTTGTATGGAGTTGAGGGATCATGTCAGCATTaGCAACATAAGCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: LRGRQVDTQCPRGLYGVEGSCQH*QHKHLL
Trigger: CAGAAGATGCTTATGTTGGCAATGCTGACATGATCC...CTCAACTCCATACAACCCTCGGGGGCACTGAGTGTCCACCTGTCTCCCCCTCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCGGAAGGGAGAGGGGGTaGAGGGCTCTAAGCCATGCA +
Preference number: 4 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSGRERG*RALSHA
Trigger: TGCATGGCTTAGAGCCCTGCACCCCCTCTCCCTTCC...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACAGGCGAGAGCCGCTCTaGTTTGGGGACAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: TKDGTLYPKQEVVRKQTDRREPL*FGDNQG
Trigger: TCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTCGCCT...GTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGAAGCACTCGAAGAGGTaGGTGAGTGTCGGATCGATG +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQKHSKR*VSVGSM
Trigger: CATCGATCCGACACTCACCCACCTCTTCGAGTGCTT...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TATGCCTTTAATTCCAGTATTCCAGAGGCAGGGGTGGGTGGATCTCTGAGTTGGACCAGGCTCTCCAGATaGCGTTGTTCAGCCGGATCT +
Preference number: 4 (lower is better)
Translates to: YAFNSSIPEAGVGGSLSWTRLSR*RCSAGS
Trigger: AGATCCGGCTGAACAACGCCATCTGGAGAGCCTGGT...CCAACTCAGAGATCCACCCACCCCTGCCTCTGGAATACTGGAATTAAAGGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp TGTTCCTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCACCAGGCTCTCCAGATaGCGTTGTTCAGCCGGATCT +
Preference number: 4 (lower is better)
Translates to: CSWSLETFTRIIMVSPGCTRLSR*RCSAGS
Trigger: AGATCCGGCTGAACAACGCCATCTGGAGAGCCTGGT...GCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTTAATATTGAACCGCCTCTTCTGCTCCGCGGAGATGTGTGTGATACGTCGGTTACCAGGCTCTCCAGATaGCGTTGTTCAGCCGGATCT +
Preference number: 4 (lower is better)
Translates to: LNIEPPLLLRGDVCDTSVTRLSR*RCSAGS
Trigger: AGATCCGGCTGAACAACGCCATCTGGAGAGCCTGGT...AACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR CCA 90 bp CCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATGTGTGATCACGAAACCACACACTaGGCTCTTCCTCCGTTGCAC +
Preference number: 4 (lower is better)
Translates to: PDIVIKHVPHLVKALMCDHETTH*ALPPLH
Trigger: GTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTG...ATCACACATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTCCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATGTGTGATCACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTT +
Preference number: 4 (lower is better)
Translates to: PDIVIKHVPHLVKALMCDHLPPA*EPGNPL
Trigger: AAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTG...ATCACACATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTCCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTCAGCGGCGTCAGGTCTaGCTGGATCATGTCAGCATT +
Preference number: 4 (lower is better)
Translates to: LGNFHQDYNGLPRVPSVTQRRQV*LDHVSI
Trigger: AATGCTGACATGATCCAGCCAGACCTGACGCCGCTG...AGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTAGAGGGAGTCAGCCATaGGGCCAAAGCTGGGGGACT +
Preference number: 4 (lower is better)
Translates to: DGTLYPKQEVVRKQTDISRGSQP*GQSWGT
Trigger: AGTCCCCCAGCTTTGGCCCCATGGCTGACTCCCTCT...AGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCTGGCAGAGGCCAAGGTaGGTGGACTTGCTTTTTGTC +
Preference number: 4 (lower is better)
Translates to: LLLCLSAQELRMVPFIQSWQRPR*VDLLFV
Trigger: GACAAAAAGCAAGTCCACCCACCTTGGCCTCTGCCA...GCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGTGGCAGAGGCCAAGGTaGGTGGACTTGCTTTTTGTC +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQWQRPR*VDLLFV
Trigger: GACAAAAAGCAAGTCCACCCACCTTGGCCTCTGCCA...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CTTAATATTGAACCGCCTCTTCTGCTCCGCGGAGATGTGTGTGATACGTCGGTTAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGT +
Preference number: 4 (lower is better)
Translates to: LNIEPPLLLRGDVCDTSVNYPPG*QPQVSG
Trigger: ACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATT...AACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATATTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR TCA 90 bp TCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTAGGGTTGTATGGAGTTaGGATCCCCTGATAGTCGCC +
Preference number: 4 (lower is better)
Translates to: SVRMLVEVLSWRREFRTVRVVWS*DPLIVA
Trigger: GGCGACTATCAGGGGATCTCAACTCCATACAACCCT...AACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCACAGGGCTCTAAGCCATaGACCTTGACAGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSQGSKP*TLTGVG
Trigger: CCCCACCCCTGTCAAGGTGCATGGCTTAGAGCCCTG...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTATGGGGAGGAGGGCTTaGACCTGGGTTGCATACCCT +
Preference number: 4 (lower is better)
Translates to: DGTLYPKQEVVRKQTDISMGRRA*TWVAYP
Trigger: AGGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCAT...AGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp ACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGATGGGGAGGAGGGCTTaGACCTGGGTTGCATACCCT +
Preference number: 4 (lower is better)
Translates to: TIPLKDSNKGRMRMLNTQMGRRA*TWVAYP
Trigger: AGGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCAT...CTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTTGCTCAGGCTTGGCTaGCCTGAGCAGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLLLRLG*PEQLCK
Trigger: CTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAA...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTTGAACCGCCTCTTCTaGTCCGCGGAGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLLNRLF*SAEMCV
Trigger: CACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAA...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp AGCTCTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCTTCTGAAGCGTGGTTaGTTTGCTCACCTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: SSESHTETHCQSHQHQPLLLKRG*FAHLEA
Trigger: AGCCTCAAGGTGAGCAAAGCAACCACGCTTCAGAAG...CAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR GCA 90 bp GTGCACATGTGTATACATGTGTGTCACTGGAAATTGAACTCAGGGTCTTACTTGGTCTGGCGGAGGCTGTaGAAGCTGGCGGTAGACACC +
Preference number: 4 (lower is better)
Translates to: VHMCIHVCHWKLNSGSYLVWRRL*KLAVDT
Trigger: GGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGAC...CAAGTAAGACCCTGAGTTCAATTTCCAGTGACACACATGTATACACATGTGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR CCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCCACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTT +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLHLPPA*EPGNPL
Trigger: AAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTG...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAGACGAGGCTGGAGATaGCATCTCTGGGGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: TIPLKDSNKGRMRMLNTQRRGWR*HLWGQD
Trigger: ATCCTGGCCCCAGAGATGCCATCTCCAGCCTCGTCT...CTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACCGGTCCAGGAGCAGGTaGGATCTTGGTCTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: TKDGTLYPKQEVVRKQTDRSRSR*DLGLRV
Trigger: GACCCTAAGACCAAGATCCCACCTGCTCCTGGACCG...GTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCCGGTCCAGGAGCAGGTaGGATCTTGGTCTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSRSRSR*DLGLRV
Trigger: GACCCTAAGACCAAGATCCCACCTGCTCCTGGACCG...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAAAGAGGCCAAGGTGGGTaGACTTGCTTTTTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKRGQGG*TCFLSP
Trigger: GGGGGACAAAAAGCAAGTCCACCCACCTTGGCCTCT...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACAGGGGTTGTTGTCTCTaGCAGTGGCAGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: TKDGTLYPKQEVVRKQTDRGCCL*QWQWQW
Trigger: CCACTGCCACTGCCACTGCCAGAGACAACAACCCCT...GTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GCACATGTGTATACATGTGTGTCACTGGAAATTGAACTCAGGGTCTTACTTGTGCAGGCCAGTGAGGTCTaGCGGAGGCTGTGCAAGCTG +
Preference number: 4 (lower is better)
Translates to: AHVYTCVSLEIELRVLLVQASEV*RRLCKL
Trigger: CAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTG...CACAAGTAAGACCCTGAGTTCAATTTCCAGTGACACACATGTATACACATGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR TCA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAAATCTGATATCTCCATaGAGTCATCTAGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: IPKEVVSATLGTFQICRENLISP*SHLGWA
Trigger: AGCCCAGCCTAGATGACTTCATGGAGATATCAGATT...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACATTGGTGAAGAAATCTaGTATCTCCATGAAGTCATC +
Preference number: 4 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHIGEEI*YLHEVI
Trigger: GATGACTTCATGGAGATATCAGATTTCTTCACCAAT...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGGGGGGCGGTAATTGGTaGAGAAATCTGATATCTCCA +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQGGGNW*RNLISP
Trigger: TGGAGATATCAGATTTCTTCACCAATTACCGCCCCC...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGTACCCTGAGGCACAGTaGAGTGAGGCCCAAAGACGG +
Preference number: 4 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQYPEAQ*SEAQRR
Trigger: CCGTCTTTGGGCCTCACTTCACTGTGCCTCAGGGTA...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCAGGGTTGTATGGAGTTaGGATCCCCTGATAGTCGCC +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLRVVWS*DPLIVA
Trigger: GGCGACTATCAGGGGATCTCAACTCCATACAACCCT...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAAAGGGTTGTATGGAGTTaGGATCCCCTGATAGTCGCC +
Preference number: 4 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKRVVWS*DPLIVA
Trigger: GGCGACTATCAGGGGATCTCAACTCCATACAACCCT...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGGTCAGCGAGTCGCTGTaGGGCGAAGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQVSESL*GEDTMK
Trigger: CTTCATGGTGTCTTCGCCGCACAGCGACTCGCTGAC...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAGCCTCAGGTTTCCGGTaGTCATCTGCTTCAGACCCC +
Preference number: 4 (lower is better)
Translates to: DHSISNSAGMELGFSPSPASGFR*SSASDP
Trigger: GGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGC...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGATCATGTCAGCATTaGCAACATAAGCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: PQGGGECNTWNLPDLQGNGSCQH*QHKHLL
Trigger: CAGAAGATGCTTATGTTGGCAATGCTGACATGATCC...GTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACGTTGCTTTGCTCACCTaGGAGCGCCACCAATGTGGG +
Preference number: 4 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNVALLT*ERHQCG
Trigger: CCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAAC...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCAAGCACTCGAAGAGGTaGGTGAGTGTCGGATCGATG +
Preference number: 4 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLKHSKR*VSVGSM
Trigger: CATCGATCCGACACTCACCCACCTCTTCGAGTGCTT...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GGAACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCCACGAAACCACACACTaGGCTCTTCCTCCGTTGCAC +
Preference number: 4 (lower is better)
Translates to: GTKDGTLYPKQEVVRKQTHETTH*ALPPLH
Trigger: GTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTG...GGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCAGCTCAGAAAGGGGTTaGGATCCAAGGGTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: KDGTLYPKQEVVRKQTDISSERG*DPRVQS
Trigger: GCTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCT...GATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp ACTAAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACTACCCATGGGGCAGATaGTCTACAGAGAAGGGGACG +
Preference number: 4 (lower is better)
Translates to: TKDGTLYPKQEVVRKQTDYPWGR*STEKGT
Trigger: CGTCCCCTTCTCTGTAGACCATCTGCCCCATGGGTA...GTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCTACCCATGGGGCAGATaGTCTACAGAGAAGGGGACG +
Preference number: 4 (lower is better)
Translates to: DTIPLKDSNKGRMRMLNTYPWGR*STEKGT
Trigger: CGTCCCCTTCTCTGTAGACCATCTGCCCCATGGGTA...GGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACTGTTGTCTCTGGCAGTaGCAGTGGCAGTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNCCLWQ*QWQWDW
Trigger: CCAGTCCCACTGCCACTGCCACTGCCAGAGACAACA...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAAGGGGTTGTTGTCTCTaGCAGTGGCAGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: DHSISNSAGMELGFSPSPRGCCL*QWQWQW
Trigger: CCACTGCCACTGCCACTGCCAGAGACAACAACCCCT...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAGCTCAGGCACAAGGCTaGGGTCAGTCAGGATGCTTG +
Preference number: 4 (lower is better)
Translates to: DHSISNSAGMELGFSPSPAQAQG*GQSGCL
Trigger: CAAGCATCCTGACTGACCCCAGCCTTGTGCCTGAGC...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR TCA 90 bp ACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGT +
Preference number: 4 (lower is better)
Translates to: TIPLKDSNKGRMRMLNTQNYPPG*QPQVSG
Trigger: ACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATT...CTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp GGAGATCTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCAATCTGATATCTCCATaGAGTCATCTAGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: GDLLLCLSAQELRMVPFINLISP*SHLGWA
Trigger: AGCCCAGCCTAGATGACTTCATGGAGATATCAGATT...GATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAGATCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGCCGCGGAGATGTGTGTaGTACGTCGGTTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQPRRCV*YVGSPS
Trigger: AGATGGAGAACCGACGTATCACACACATCTCCGCGG...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp TACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAATTTCATCCCGCAGCTaGTGCGCCTCCTCCTGCATA +
Preference number: 4 (lower is better)
Translates to: YPLSKAGSCEETDRHLSSISSRS*CASSCI
Trigger: TATGCAGGAGGAGGCGCAGCAGCTGCGGGATGAAAT...TGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp GACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCAAGCACTCGAAGAGGTaGGTGAGTGTCGGATCGATG +
Preference number: 4 (lower is better)
Translates to: DTIPLKDSNKGRMRMLNTKHSKR*VSVGSM
Trigger: CATCGATCCGACACTCACCCACCTCTTCGAGTGCTT...GGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CCA 90 bp AAGCAAGTTGAAAAGTACTCAAAGGGCCGGGTGGTGGTGACATATGCCTTTAATCACGAAACCACACACTaGGCTCTTCCTCCGTTGCAC +
Preference number: 4 (lower is better)
Translates to: KQVEKYSKGRVVVTYAFNHETTH*ALPPLH
Trigger: GTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTG...ATTAAAGGCATATGTCACCACCACCCGGCCCTTTGAGTACTTTTCAACTTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CCA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGAGAGGCCAAGGTGGGTaGACTTGCTTTTTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQRGQGG*TCFLSP
Trigger: GGGGGACAAAAAGCAAGTCCACCCACCTTGGCCTCT...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGT +
Preference number: 4 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQNYPPG*QPQVSG
Trigger: ACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATT...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TCAGTCAGGATGCTTGTGGAAGTGCTGAGTTGGCGAAGGGAATTCAGGACAGTTAATCTGATATCTCCATaGAGTCATCTAGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SVRMLVEVLSWRREFRTVNLISP*SHLGWA
Trigger: AGCCCAGCCTAGATGACTTCATGGAGATATCAGATT...AACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATCCTGACTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp ACAGACAGACCGACACACAAGGGAGAAAGTCCCCTTGCCCTGACCCCATTCACAATTGGTGAAGAAATCTaGTATCTCCATGAAGTCATC +
Preference number: 4 (lower is better)
Translates to: TDRPTHKGESPLALTPFTIGEEI*YLHEVI
Trigger: GATGACTTCATGGAGATATCAGATTTCTTCACCAAT...TGTGAATGGGGTCAGGGCAAGGGGACTTTCTCCCTTGTGTGTCGGTCTGTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp AGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGATCTCGGATCATGTCAGCATTaGCAACATAAGCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: SHPIAPHVTSAKAKRGDLGSCQH*QHKHLL
Trigger: CAGAAGATGCTTATGTTGGCAATGCTGACATGATCC...GAGATCTCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAGACTATGAGGACCACTaGCCTGAGCAGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: DHSISNSAGMELGFSPSPDYEDH*PEQLCK
Trigger: CTTACACAGCTGCTCAGGGCAGTGGTCCTCATAGTC...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129008.5
CDS-3UTR TCA 90 bp GGTAGCTGCTGCTGGCACAAGTTGATGGCAGCGTTGAGCTCCTCTATTTCATCCATTGGTGAAGAAATCTaGTATCTCCATGAAGTCATC +
Preference number: 4 (lower is better)
Translates to: GSCCWHKLMAALSSSISSIGEEI*YLHEVI
Trigger: GATGACTTCATGGAGATATCAGATTTCTTCACCAAT...GGATGAAATAGAGGAGCTCAACGCTGCCATCAACTTGTGCCAGCAGCAGCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR GCA 90 bp ATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATGTGTGATGGGCACGGATCATGTCAGCATTaGCAACATAAGCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: IVIKHVPHLVKALMCDGHGSCQH*QHKHLL
Trigger: CAGAAGATGCTTATGTTGGCAATGCTGACATGATCC...GTGCCCATCACACATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGATTGGTGAAGAAATCTaGTATCTCCATGAAGTCATC +
Preference number: 4 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQIGEEI*YLHEVI
Trigger: GATGACTTCATGGAGATATCAGATTTCTTCACCAAT...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR TCA 90 bp TGTTCCTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCATTGGTGAAGAAATCTaGTATCTCCATGAAGTCATC +
Preference number: 4 (lower is better)
Translates to: CSWSLETFTRIIMVSPGCIGEEI*YLHEVI
Trigger: GATGACTTCATGGAGATATCAGATTTCTTCACCAAT...GCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR GCA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCGGATCATGTCAGCATTaGCAACATAAGCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSGSCQH*QHKHLL
Trigger: CAGAAGATGCTTATGTTGGCAATGCTGACATGATCC...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
3UTR CAA 72 bp ACTGAGACACATTGCCAGTCACACCAACACCAACCCTaGCAGACAGTTTTTGCTTTTATTGATGAAGAACAT +
Preference number: 4 (lower is better)
Translates to: TETHCQSHQHQP*QTVFAFIDEEH
Trigger: ATGTTCTTCATCAATAAAAGCAAAAACTGTCTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
3UTR CAA 72 bp ATTTTTAGAAGCGTGTTCACAAGTTGTTCCTGGAGCTaGGAAACTTTCACCAGGATTATAATGGTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: IFRSVFTSCSWS*ETFTRIIMVSP
Trigger: TGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACAACTTGTGAACACGCTTCTAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS CCA 90 bp TCGATGCTGCGCGGCCCGAAGTCGGCGAGCCCCACGGGCCCCTCCTaGTCGCGTCGCCGGGTCAGCGAGTCGCTGTGCGGCGAAGACACC +
Preference number: 5 (lower is better)
Translates to: SMLRGPKSASPTGPS*SRRRVSESLCGEDT
Trigger: GGTGTCTTCGCCGCACAGCGACTCGCTGACCCGGCGACGCGACCAGGAGGGGCCCGTGGGGCTCGCCGACTTCGGGCCGCGCAGCATCGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS TCA 90 bp CCAGCTTGCCACTGTAAGCCAGGCTCAAGCACTCGAAGAGGTGGGTaGGTGTCGGATCGATGCTGCGCGGCCCGAAGTCGGCGAGCCCCA +
Preference number: 5 (lower is better)
Translates to: PACHCKPGSSTRRGG*VSDRCCAARSRRAP
Trigger: TGGGGCTCGCCGACTTCGGGCCGCGCAGCATCGATCCGACACTCACCCACCTCTTCGAGTGCTTGAGCCTGGCTTACAGTGGCAAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 90 bp CTCTGGAGGCCGGAGGAGGGTACCGGGCATAGTCGGAGGCTCCAGTaGTTGCTCAGGCTTGGCTGCCCTGAGCAGCTGTGTAAGACAGGG +
Preference number: 5 (lower is better)
Translates to: LWRPEEGTGHSRRLQ*LLRLGCPEQLCKTG
Trigger: CCCTGTCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTCCTCCGGCCTCCAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS CCA 90 bp GTTCGCACCATCGCTCTGGTGGCGGCCACCCACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTTCCCTGCTGGACTTACGGAGCCGCT +
Preference number: 5 (lower is better)
Translates to: VRTIALVAATHLPPA*EPGNPLPCWTYGAA
Trigger: AGCGGCTCCGTAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGGGTGGCCGCCACCAGAGCGATGGTGCGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS CCA 90 bp GGGCAGATGGTCTACAGAGAAGGGGACGGGACCAGGGCCGGGCTGTaGGGTGGGGACAAAGGTTGTGGGTGCAGGAAGCGTAGACACTCC +
Preference number: 5 (lower is better)
Translates to: GQMVYREGDGTRAGL*GGDKGCGCRKRRHS
Trigger: GGAGTGTCTACGCTTCCTGCACCCACAACCTTTGTCCCCACCCCACAGCCCGGCCCTGGTCCCGTCCCCTTCTCTGTAGACCATCTGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp AGGGTGCCCTCTGTGACTGCCCGTGTGGCTTGCTCAGGCACAAGGCTGGGGTCAGAGAGCCGCTCTGCTTaGGGGACAACCAGGGACCTG +
Preference number: 5 (lower is better)
Translates to: RVPSVTARVACSGTRLGSESRSA*GTTRDL
Trigger: CAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTC...TGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS GCA 90 bp AGTGTGTCGGAGATATCGGACAAGAAGCAGTCCAGGTCTAGAAGCTaGCGGCCCCCAGGCTCCTCCTCGGAGCCCCCAAGCAGCACAGGC +
Preference number: 5 (lower is better)
Translates to: SVSEISDKKQSRSRS*RPPGSSSEPPSSTG
Trigger: GCCTGTGCTGCTTGGGGGCTCCGAGGAGGAGCCTGGGGGCCGGCAGCTTCTAGACCTGGACTGCTTCTTGTCCGATATCTCCGACACACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp AGCTGCTGCGCCTCCTCCTGCATAGCTGCCCGTTCCTGCTGCAGCATCAGGATGGATGGGGAGGAGGGCTaGCACCTGGGTTGCATACCC +
Preference number: 5 (lower is better)
Translates to: SCCASSCIAARSCCSIRMDGEEG*HLGCIP
Trigger: GGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCATC...CATCCTGATGCTGCAGCAGGAACGGGCAGCTATGCAGGAGGAGGCGCAGCAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS CCA 90 bp ATGTGGGCCTCTGTGTTGGCAAGCCCTGGGAGCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTGTCGAATCCT +
Preference number: 5 (lower is better)
Translates to: MWASVLASPGSLRLG*ALSVLTSPCRVSNP
Trigger: AGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGCTCCCAGGGCTTGCCAACACAGAGGCCCACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128691.8
CDS CCA 90 bp AAGGGAGTGTGCATTGCTGGCTGGGGGCTCACCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTGTCGAATCCT +
Preference number: 5 (lower is better)
Translates to: KGVCIAGWGLTLRLG*ALSVLTSPCRVSNP
Trigger: AGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGTGAGCCCCCAGCCAGCAATGCACACTCCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CCA 90 bp TCCAAGGAGGGGTTCCACGACTCTAAGGGAGTGTGCATTGCTGGCTaGGGGCTCACCTTGAGGCTGGGCTGGGCACTGAGCGTGCTGACA +
Preference number: 5 (lower is better)
Translates to: SKEGFHDSKGVCIAG*GLTLRLGWALSVLT
Trigger: TGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGTGAGCCCCCAGCCAGCAATGCACACTCCCTTAGAGTCGTGGAACCCCTCCTTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CCA 90 bp GCCACCAATGTGGGCCTCTGTGTTGGCAAGCCCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTGTCGAATCCT +
Preference number: 5 (lower is better)
Translates to: ATNVGLCVGKPLRLG*ALSVLTSPCRVSNP
Trigger: AGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGGCTTGCCAACACAGAGGCCCACATTGGTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGGATGGGGAGGAGGGCTaGCACCTGGGTTGCATACCC +
Preference number: 5 (lower is better)
Translates to: GQLAGEQVGNSTVPARPVDGEEG*HLGCIP
Trigger: GGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCATC...CACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCGATGGGGAGGAGGGCTaGCACCTGGGTTGCATACCC +
Preference number: 5 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVDGEEG*HLGCIP
Trigger: GGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCATC...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS TCA 90 bp GGTCCAGAGCAGCTGTTCCGAGCCTGTAGGCGTGTATTCCCTGAGTaGGGGGTCATCCCTGAGGAGGAGGAAGACGAGGCTGGAGATGGC +
Preference number: 5 (lower is better)
Translates to: GPEQLFRACRRVFPE*GVIPEEEEDEAGDG
Trigger: GCCATCTCCAGCCTCGTCTTCCTCCTCCTCAGGGATGACCCCTCACTCAGGGAATACACGCCTACAGGCTCGGAACAGCTGCTCTGGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCGTTGCTTTGCTCACCTaGAGGCTGGGCTGGGCACTG +
Preference number: 5 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVVALLT*RLGWAL
Trigger: CAGTGCCCAGCCCAGCCTCAAGGTGAGCAAAGCAAC...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS GCA 90 bp GGTACCGGGCATAGTCGGAGGCTCCAGTGCTTGCTCAGGCTTGGCTaGCCTGAGCAGCTGTGTAAGACAGGGGTTGTTGTCTCTGGCAGT +
Preference number: 5 (lower is better)
Translates to: GTGHSRRLQCLLRLG*PEQLCKTGVVVSGS
Trigger: ACTGCCAGAGACAACAACCCCTGTCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TTGAGGGGGAGACAGGTGGACACTCAGTGCCCCCGAGGGTTGTATGGAGTTGAGCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCT +
Preference number: 5 (lower is better)
Translates to: LRGRQVDTQCPRGLYGVEPPSTC*GARKSP
Trigger: AGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGG...CTCAACTCCATACAACCCTCGGGGGCACTGAGTGTCCACCTGTCTCCCCCTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR CAA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTGAGAGCCGCTCTGCTTaGGGGACAACCAGGGACCTG +
Preference number: 5 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTESRSA*GTTRDL
Trigger: CAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTC...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS GCA 90 bp AGGATGACAGCCTCAGGTTTCCGGTGCTCATCTGCTTCAGACCCCTaGAGAGGGGTCACGAAACCACACACTGGGCTCTTCCTCCGTTGC +
Preference number: 5 (lower is better)
Translates to: RMTASGFRCSSASDP*RGVTKPHTGLFLRC
Trigger: GCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGCTGTCATCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS-3UTR CAA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCT +
Preference number: 5 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPPPSTC*GARKSP
Trigger: AGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGG...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CCCTGGGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGTTGCTTTGCTCACCTaGAGGCTGGGCTGGGCACTG +
Preference number: 5 (lower is better)
Translates to: PWGWGSLGQCSTKPHNLVVALLT*RLGWAL
Trigger: CAGTGCCCAGCCCAGCCTCAAGGTGAGCAAAGCAAC...CACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCCCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR CAA 90 bp CAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGACCCAGAACTTCCAGTaGTGCAGCGTGCGCGTCCGG +
Preference number: 5 (lower is better)
Translates to: QWPQSGSHPIAPHVTSAKTQNFQ*CSVRVR
Trigger: CCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGT...CTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CAA 90 bp GGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGGCAGGAACCCAGAACTTCCAGTaGTGCAGCGTGCGCGTCCGG +
Preference number: 5 (lower is better)
Translates to: GWGSLGQCSTKPHNLVAGTQNFQ*CSVRVR
Trigger: CCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGT...TCCTGCCACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS TCA 90 bp GCATCACCACCTCGATGCGCCGCTTCCAGTAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGTGCTCATCTGCTTCAGACCCCTGCA +
Preference number: 5 (lower is better)
Translates to: ASPPRCAASSNYPPG*QPQVSGAHLLQTPA
Trigger: TGCAGGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 90 bp GCAGCATCAGGATGTACTCCGCTGTCTTCTGAAGCGTGGTTGCTTTaGTCACCTGCGAGCGCCACCAATGTGGGCCTCTGTGTTGGCAAG +
Preference number: 5 (lower is better)
Translates to: AASGCTPLSSEAWLL*SPASATNVGLCVGK
Trigger: CTTGCCAACACAGAGGCCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCCTGATGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153519.8
ENSMUST00000154840.3
CDS GCA 90 bp CTGCTGCAGCATCAGGATGTACTCCGCTGTCTTCTGAAGCGTGGTTaGTTTGCTCACCTGCGAGCGCCACCAATGTGGGCCTCTGTGTTG +
Preference number: 5 (lower is better)
Translates to: LLQHQDVLRCLLKRG*FAHLRAPPMWASVL
Trigger: CAACACAGAGGCCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCCTGATGCTGCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153519.8
ENSMUST00000154840.3
CDS-3UTR CAA 90 bp CAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCT +
Preference number: 5 (lower is better)
Translates to: QWPQSGSHPIAPHVTSAKPPSTC*GARKSP
Trigger: AGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGG...CTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TGTCTACACGACCCCGGCTTAGGACAGTTTGAGGGGGAGACAGGTGGACACTCAGAGCTCAGAAAGGGGTaGGGATCCAAGGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: CLHDPGLGQFEGETGGHSELRKG*GSKGPE
Trigger: CTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCTC...TGAGTGTCCACCTGTCTCCCCCTCAAACTGTCCTAAGCCGGGGTCGTGTAGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000129008.5
ENSMUST00000142385.8
CDS-3UTR CAA 90 bp CAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGATGTGGGCCTCTGTGTaGGCAAGCCCTGGGAGCTTG +
Preference number: 5 (lower is better)
Translates to: QWPQSGSHPIAPHVTSAKMWASV*ASPGSL
Trigger: CAAGCTCCCAGGGCTTGCCAACACAGAGGCCCACAT...CTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128691.8
CDS GCA 90 bp GTAATTACCCTCCAGGATGACAGCCTCAGGTTTCCGGTGCTCATCTaGTTCAGACCCCTGCAGAGGGGTCACGAAACCACACACTGGGCT +
Preference number: 5 (lower is better)
Translates to: VITLQDDSLRFPVLI*FRPLQRGHETTHWA
Trigger: AGCCCAGTGTGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS-3UTR CAA 90 bp GGCATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCTGGGCTCTTCCTCCGTaGCACATACTGAATGTACCA +
Preference number: 5 (lower is better)
Translates to: GIRPQWPQSGSHPIAPHVWALPP*HILNVP
Trigger: TGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCA...GACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAAAGCGCTGATCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCT +
Preference number: 5 (lower is better)
Translates to: CASGHSHQTCPASGQSADPPSTC*GARKSP
Trigger: AGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGG...ATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGAGCTCAGAAAGGGGTaGGGATCCAAGGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: PKEVVSATLGTFQICRETELRKG*GSKGPE
Trigger: CTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCTC...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TCAGAGCTCCTGTTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTAAGCCATGCACCTaGACAGGGGTGGGGAATGGA +
Preference number: 5 (lower is better)
Translates to: SELLFRSPVLQLLMHLGPSKPCT*TGVGNG
Trigger: TCCATTCCCCACCCCTGTCAAGGTGCATGGCTTAGA...GGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAACAGGAGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS CCA 90 bp CTCATCTGCTTCAGACCCCTGCAGAGGGGTCACGAAACCACACACTaGGCTCTTCCTCCGTTGCACATACTGAATGTACCAGGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: LICFRPLQRGHETTH*ALPPLHILNVPGSP
Trigger: TGGAGAGCCTGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAAGCAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS-3UTR CAA 90 bp CAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGCCAGTGAGGAGCAACTTGAGGCCTTaGAAGTTCTTCCACTTGGGA +
Preference number: 5 (lower is better)
Translates to: QLAGEQVGNSTVPARPVRSNLRP*KFFHLG
Trigger: TCCCAAGTGGAAGAACTTCAAAGGCCTCAAGTTGCT...CCTCACTGGCCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGTGGGCTCTTCCTCCGTaGCACATACTGAATGTACCA +
Preference number: 5 (lower is better)
Translates to: SDEDAEHPELPVVQRARPWALPP*HILNVP
Trigger: TGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCA...CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TGTTCCTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCGATGGGGAGGAGGGCTaGCACCTGGGTTGCATACCC +
Preference number: 5 (lower is better)
Translates to: CSWSLETFTRIIMVSPGCDGEEG*HLGCIP
Trigger: GGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCATC...GCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCGAGGGTTGTATGGAGTaGAGATCCCCTGATAGTCGC +
Preference number: 5 (lower is better)
Translates to: DAEHPELPVVQRARPDIVEGCME*RSPDSR
Trigger: GCGACTATCAGGGGATCTCAACTCCATACAACCCTC...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGCATCTGGTCAATCTTCTGAAGCGTGGTaGCTTTGCTCACCTGCGAGC +
Preference number: 5 (lower is better)
Translates to: CAACASGHSHQTCPASGQSSEAW*LCSPAS
Trigger: GCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGA...TTGACCAGATGCGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS CCA 90 bp ACCCACCTTCCACCTGCTTGGGAGCCAGGAAATCCCCTTCCCTGCTaGACTTACGGAGCCGCTTTTTGTAGTAGATTCTCCACTTGTGGT +
Preference number: 5 (lower is better)
Translates to: THLPPAWEPGNPLPC*TYGAAFCSRFSTCG
Trigger: ACCACAAGTGGAGAATCTACTACAAAAAGCGGCTCCGTAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS-3UTR CAA 90 bp ATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACTTTGAAGTTCTTCCACTaGGGAGAGACCAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: IRPQWPQSGSHPIAPHVTLKFFH*GETSLP
Trigger: TGGCAAGCTGGTCTCTCCCAAGTGGAAGAACTTCAA...AGTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CATCAGACCCCAGTGGCCTCAGTCAGGAAGCCACCCTATAGCTCCCCATGTCACAGCAACTTGAGGCCTTaGAAGTTCTTCCACTTGGGA +
Preference number: 5 (lower is better)
Translates to: HQTPVASVRKPPYSSPCHSNLRP*KFFHLG
Trigger: TCCCAAGTGGAAGAACTTCAAAGGCCTCAAGTTGCT...GTGACATGGGGAGCTATAGGGTGGCTTCCTGACTGAGGCCACTGGGGTCTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGGCCAGCTCCCGGCATAGCAACTaGAGGCCTTTGAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: EVVSATLGTFQICRETASSRHSN*RPLKFF
Trigger: GAAGAACTTCAAAGGCCTCAAGTTGCTATGCCGGGA...GCTGGCCGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GATGCTGAACACCCAGAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCTGGGCTCTTCCTCCGTaGCACATACTGAATGTACCA +
Preference number: 5 (lower is better)
Translates to: DAEHPELPVVQRARPDIVWALPP*HILNVP
Trigger: TGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCA...GACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGAGCTCAGAAAGGGGTaGGGATCCAAGGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: SGSHPIAPHVTSAKAKRGELRKG*GSKGPE
Trigger: CTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCTC...TCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp ATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAATCTAAGCCATGCACCTaGACAGGGGTGGGGAATGGA +
Preference number: 5 (lower is better)
Translates to: IPKEVVSATLGTFQICRESKPCT*TGVGNG
Trigger: TCCATTCCCCACCCCTGTCAAGGTGCATGGCTTAGA...TTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCGAGAGCCGCTCTGCTTaGGGGACAACCAGGGACCTG +
Preference number: 5 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLESRSA*GTTRDL
Trigger: CAGGTCCCTGGTTGTCCCCAAAGCAGAGCGGCTCTC...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp AATTCAGGACAGTTGGCCGGAGAGCAGGTAGGGAACAGTACTGTTCCAGCCAGGTTGAAGTTCTTCCACTaGGGAGAGACCAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: NSGQLAGEQVGNSTVPARLKFFH*GETSLP
Trigger: TGGCAAGCTGGTCTCTCCCAAGTGGAAGAACTTCAA...CCTGGCTGGAACAGTACTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GAACTTCCAGTTGTGCAGCGTGCGCGTCCGGACATAGTCATCAAACATGTCCCGTCCCGGCATAGCAACTaGAGGCCTTTGAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: ELPVVQRARPDIVIKHVPSRHSN*RPLKFF
Trigger: GAAGAACTTCAAAGGCCTCAAGTTGCTATGCCGGGA...CGGGACATGTTTGATGACTATGTCCGGACGCGCACGCTGCACAACTGGAAGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CATCCCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGATGGGCTCTTCCTCCGTaGCACATACTGAATGTACCA +
Preference number: 5 (lower is better)
Translates to: HPQGGGECNTWNLPDLQGWALPP*HILNVP
Trigger: TGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCA...TCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGACTGAGCTCAGAAAGGGGTaGGGATCCAAGGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: LGNFHQDYNGLPRVPSVTELRKG*GSKGPE
Trigger: CTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCTC...AGTCACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CTGAGTCCCATACTGAGACACATTGCCAGTCACACCAACACCAACCCTTGCAGATCTAAGCCATGCACCTaGACAGGGGTGGGGAATGGA +
Preference number: 5 (lower is better)
Translates to: LSPILRHIASHTNTNPCRSKPCT*TGVGNG
Trigger: TCCATTCCCCACCCCTGTCAAGGTGCATGGCTTAGA...TCTGCAAGGGTTGGTGTTGGTGTGACTGGCAATGTGTCTCAGTATGGGACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS-3UTR CAA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCTGTGTTGGCAAGCCCTaGAGGCTGGGCTGGGCACTG +
Preference number: 5 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSCVGKP*RLGWAL
Trigger: CAGTGCCCAGCCCAGCCTCAAGGGCTTGCCAACACA...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CCCAAGGAGGTGGTGAGTGCAACACTTGGAACCTTCCAGATCTGCAGGGAAACGAGCAACTTGAGGCCTTaGAAGTTCTTCCACTTGGGA +
Preference number: 5 (lower is better)
Translates to: PKEVVSATLGTFQICRETSNLRP*KFFHLG
Trigger: TCCCAAGTGGAAGAACTTCAAAGGCCTCAAGTTGCT...CGTTTCCCTGCAGATCTGGAAGGTTCCAAGTGTTGCACTCACCACCTCCTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp ACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCT +
Preference number: 5 (lower is better)
Translates to: TIPLKDSNKGRMRMLNTQPPSTC*GARKSP
Trigger: AGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGG...CTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCAGATGGGGAGGAGGGCTaGCACCTGGGTTGCATACCC +
Preference number: 5 (lower is better)
Translates to: DHSISNSAGMELGFSPSPDGEEG*HLGCIP
Trigger: GGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCATC...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TCAGGAAGCCACCCTATAGCTCCCCATGTCACTAGTGCAAAGGCAAAGAGAGGAGAGGGTTGTATGGAGTaGAGATCCCCTGATAGTCGC +
Preference number: 5 (lower is better)
Translates to: SGSHPIAPHVTSAKAKRGEGCME*RSPDSR
Trigger: GCGACTATCAGGGGATCTCAACTCCATACAACCCTC...TCCTCTCTTTGCCTTTGCACTAGTGACATGGGGAGCTATAGGGTGGCTTCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CTCCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCTTGAAGTTCTTCCACTaGGGAGAGACCAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: LLLCLSAQELRMVPFIQSLKFFH*GETSLP
Trigger: TGGCAAGCTGGTCTCTCCCAAGTGGAAGAACTTCAA...GCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CCTGCTCTGCCTCTCTGCTCAGGAACTAAGGATGGTACCCTTTATCCAAAGCAGTTGAAGTTCTTCCACTaGGGAGAGACCAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: PALPLCSGTKDGTLYPKQLKFFH*GETSLP
Trigger: TGGCAAGCTGGTCTCTCCCAAGTGGAAGAACTTCAA...CTGCTTTGGATAAAGGGTACCATCCTTAGTTCCTGAGCAGAGAGGCAGAGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTGTGTCCCGGCATAGCAACTaGAGGCCTTTGAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: ELGNFHQDYNGLPRVPSVSRHSN*RPLKFF
Trigger: GAAGAACTTCAAAGGCCTCAAGTTGCTATGCCGGGA...CACAGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCGAGCTCAGAAAGGGGTaGGGATCCAAGGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: DTIPLKDSNKGRMRMLNTELRKG*GSKGPE
Trigger: CTCTGGACCCTTGGATCCCAACCCCTTTCTGAGCTC...GGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCTAAGCCATGCACCTaGACAGGGGTGGGGAATGGA +
Preference number: 5 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLSKPCT*TGVGNG
Trigger: TCCATTCCCCACCCCTGTCAAGGTGCATGGCTTAGA...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CTGGAGCTTGGAAACTTTCACCAGGATTATAATGGTCTCCCCAGGGTGCCCTCTAGCAACTTGAGGCCTTaGAAGTTCTTCCACTTGGGA +
Preference number: 5 (lower is better)
Translates to: LELGNFHQDYNGLPRVPSSNLRP*KFFHLG
Trigger: TCCCAAGTGGAAGAACTTCAAAGGCCTCAAGTTGCT...AGAGGGCACCCTGGGGAGACCATTATAATCCTGGTGAAAGTTTCCAAGCTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCTCTAAGCCATGCACCTaGACAGGGGTGGGGAATGGA +
Preference number: 5 (lower is better)
Translates to: DTIPLKDSNKGRMRMLNTSKPCT*TGVGNG
Trigger: TCCATTCCCCACCCCTGTCAAGGTGCATGGCTTAGA...GGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TTTAGGTCCCCAGTGCTGCAGCTGCTAATGCATTTGGGGCCCTCTGTTATTAAATCCCGGCATAGCAACTaGAGGCCTTTGAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: FRSPVLQLLMHLGPSVIKSRHSN*RPLKFF
Trigger: GAAGAACTTCAAAGGCCTCAAGTTGCTATGCCGGGA...TTTAATAACAGAGGGCCCCAAATGCATTAGCAGCTGCAGCACTGGGGACCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp CTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCTCATCAGAGCGAGGGTTGTATGGAGTaGAGATCCCCTGATAGTCGC +
Preference number: 5 (lower is better)
Translates to: LYPKQEVVRKQTDISHQSEGCME*RSPDSR
Trigger: GCGACTATCAGGGGATCTCAACTCCATACAACCCTC...GCTCTGATGAGAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TCCCTGGGGCTGGGGGAGTCTAGGCCAGTGCTCTACAAAGCCTCACAATTTAGTGTAGACACCATCCCATaGAAGGATTCAAATAAAGGT +
Preference number: 5 (lower is better)
Translates to: SLGLGESRPVLYKASQFSVDTIP*KDSNKG
Trigger: ACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC...ACTAAATTGTGAGGCTTTGTAGAGCACTGGCCTAGACTCCCCCAGCCCCAGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123370.3
CDS-3UTR CAA 90 bp GGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCTCAGCAACTTGAGGCCTTaGAAGTTCTTCCACTTGGGA +
Preference number: 5 (lower is better)
Translates to: GWYPLSKAGSCEETDRHLSNLRP*KFFHLG
Trigger: TCCCAAGTGGAAGAACTTCAAAGGCCTCAAGTTGCT...GAGATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp TTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACACCCAGAACTTCCAGTTGAAGTTCTTCCACTaGGGAGAGACCAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: LKDSNKGRMRMLNTQNFQLKFFH*GETSLP
Trigger: TGGCAAGCTGGTCTCTCCCAAGTGGAAGAACTTCAA...CTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GTAGACACCATCCCATTGAAGGATTCAAATAAAGGTCGGATGAGGATGCTGAACTCCCGGCATAGCAACTaGAGGCCTTTGAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: VDTIPLKDSNKGRMRMLNSRHSN*RPLKFF
Trigger: GAAGAACTTCAAAGGCCTCAAGTTGCTATGCCGGGA...GTTCAGCATCCTCATCCGACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp GATCATAGCATTAGCAACAGTGCAGGAATGGAACTAGGTTTTTCTCCATCCCCATGGGCTCTTCCTCCGTaGCACATACTGAATGTACCA +
Preference number: 5 (lower is better)
Translates to: DHSISNSAGMELGFSPSPWALPP*HILNVP
Trigger: TGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCA...TGGGGATGGAGAAAAACCTAGTTCCATTCCTGCACTGTTGCTAATGCTATGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS-3UTR CAA 90 bp AAGGATGGTACCCTTTATCCAAAGCAGGAAGTTGTGAGGAAACAGACCGACATCGTAGACACCATCCCATaGAAGGATTCAAATAAAGGT +
Preference number: 5 (lower is better)
Translates to: KDGTLYPKQEVVRKQTDIVDTIP*KDSNKG
Trigger: ACCTTTATTTGAATCCTTCAATGGGATGGTGTCTAC...GATGTCGGTCTGTTTCCTCACAACTTCCTGCTTTGGATAAAGGGTACCATCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005507.10
CDS CCA 72 bp CGCGGCCCGAAGTCGGCGAGCCCCACGGGCCCCTCCTaGTCGCGTCGCCGGGTCAGCGAGTCGCTGTGCGGC +
Preference number: 6 (lower is better)
Translates to: RGPKSASPTGPS*SRRRVSESLCG
Trigger: GCCGCACAGCGACTCGCTGACCCGGCGACGCGACCAGGAGGGGCCCGTGGGGCTCGCCGACTTCGGGCCGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp GAGTCCGAGTCCGGGCTAGGGACGACCCGGGGGACCTaGAAGTTCACGGATAGATCCGCCAGCGCGCGCGCC +
Preference number: 6 (lower is better)
Translates to: ESESGLGTTRGT*KFTDRSASARA
Trigger: GGCGCGCGCGCTGGCGGATCTATCCGTGAACTTGCAGGTCCCCCGGGTCGTCCCTAGCCCGGACTCGGACTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp CCGGAGGAGGGTACCGGGCATAGTCGGAGGCTCCAGTaGTTGCTCAGGCTTGGCTGCCCTGAGCAGCTGTGT +
Preference number: 6 (lower is better)
Translates to: PEEGTGHSRRLQ*LLRLGCPEQLC
Trigger: ACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTCCTCCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS CCA 72 bp TGCATTGCTGGCTGGGGGCTCACCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTG +
Preference number: 6 (lower is better)
Translates to: CIAGWGLTLRLG*ALSVLTSPCRV
Trigger: CACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGTGAGCCCCCAGCCAGCAATGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CCA 72 bp GTGGGCCTCTGTGTTGGCAAGCCCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTG +
Preference number: 6 (lower is better)
Translates to: VGLCVGKPLRLG*ALSVLTSPCRV
Trigger: CACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGGCTTGCCAACACAGAGGCCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS CCA 72 bp CTCACCTGCGAGCGCCACCAATGTGGGCCTCTGTGTTaGCAAGCCCTTGAGGCTGGGCTGGGCACTGAGCGT +
Preference number: 6 (lower is better)
Translates to: LTCERHQCGPLC*QALEAGLGTER
Trigger: ACGCTCAGTGCCCAGCCCAGCCTCAAGGGCTTGCCAACACAGAGGCCCACATTGGTGGCGCTCGCAGGTGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153519.8
CDS CAA 90 bp TGTTCGCACCATCGCTCTGGTGGCGGCCACCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCTTCCCTGCTGGACTTACGGAGCCGC +
Preference number: 6 (lower is better)
Translates to: CSHHRSGGGHPPSTC*GARKSPSLLDLRSR
Trigger: GCGGCTCCGTAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGGGTGGCCGCCACCAGAGCGATGGTGCGAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp GAGATATCGGACAAGAAGCAGTCCAGGTCTAGAAGCTaGCGGCCCCCAGGCTCCTCCTCGGAGCCCCCAAGC +
Preference number: 6 (lower is better)
Translates to: EISDKKQSRSRS*RPPGSSSEPPS
Trigger: GCTTGGGGGCTCCGAGGAGGAGCCTGGGGGCCGGCAGCTTCTAGACCTGGACTGCTTCTTGTCCGATATCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS CCA 72 bp TCTGTGTTGGCAAGCCCTGGGAGCTTGAGGCTGGGCTaGGCACTGAGCGTGCTGACAAGTCCGTGCAGGGTG +
Preference number: 6 (lower is better)
Translates to: SVLASPGSLRLG*ALSVLTSPCRV
Trigger: CACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGCTCCCAGGGCTTGCCAACACAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128691.8
CDS TCA 72 bp CACTGTAAGCCAGGCTCAAGCACTCGAAGAGGTGGGTaGGTGTCGGATCGATGCTGCGCGGCCCGAAGTCGG +
Preference number: 6 (lower is better)
Translates to: HCKPGSSTRRGG*VSDRCCAARSR
Trigger: CCGACTTCGGGCCGCGCAGCATCGATCCGACACTCACCCACCTCTTCGAGTGCTTGAGCCTGGCTTACAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp TGGTCCAAGGAGGGGTTCCACGACTCTAAGGGAGTGTaGATTGCTGGCTGGGGGCTCACCTTGAGGCTGGGC +
Preference number: 6 (lower is better)
Translates to: WSKEGFHDSKGV*IAGWGLTLRLG
Trigger: GCCCAGCCTCAAGGTGAGCCCCCAGCCAGCAATGCACACTCCCTTAGAGTCGTGGAACCCCTCCTTGGACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CCA 72 bp ATCGCTCTGGTGGCGGCCACCCACCTTCCACCTGCTTaGGAGCCAGGAAATCCCCTTCCCTGCTGGACTTAC +
Preference number: 6 (lower is better)
Translates to: IALVAATHLPPA*EPGNPLPCWTY
Trigger: GTAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGGGTGGCCGCCACCAGAGCGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS CCA 72 bp CGTGGTTGCTTTGCTCACCTGCGAGCGCCACCAATGTaGGCCTCTGTGTTGGCAAGCCCTGGGAGCTGGTGT +
Preference number: 6 (lower is better)
Translates to: RGCFAHLRAPPM*ASVLASPGSWC
Trigger: ACACCAGCTCCCAGGGCTTGCCAACACAGAGGCCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CAA 72 bp CATCGCTCTGGTGGCGGCCACCCACCTTCCACCTGCTaGGGAGCCAGGAAATCCCCTTCCCTGCTGGACTTA +
Preference number: 6 (lower is better)
Translates to: HRSGGGHPPSTC*GARKSPSLLDL
Trigger: TAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGGGTGGCCGCCACCAGAGCGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS CAA 72 bp CCGGGCATAGTCGGAGGCTCCAGTGCTTGCTCAGGCTaGGCTGCCCTGAGCAGCTGTGTAAGACAGGGGTTG +
Preference number: 6 (lower is better)
Translates to: PGIVGGSSACSG*AALSSCVRQGL
Trigger: CAACCCCTGTCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS CAA 72 bp GAGGAGGGTACCGGGCATAGTCGGAGGCTCCAGTGCTaGCTCAGGCTTGGCTGCCCTGAGCAGCTGTGTAAG +
Preference number: 6 (lower is better)
Translates to: EEGTGHSRRLQC*LRLGCPEQLCK
Trigger: CTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS GCA 72 bp AGGAGGGTACCGGGCATAGTCGGAGGCTCCAGTGCTTaGTCAGGCTTGGCTGCCCTGAGCAGCTGTGTAAGA +
Preference number: 6 (lower is better)
Translates to: RRVPGIVGGSSA*SGLAALSSCVR
Trigger: TCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS CCA 72 bp CCAATGTGGGCCTCTGTGTTGGCAAGCCCTGGGAGCTaGTGTTGGGTGTTGGTCCAAGGAGGGGTTCCACGA +
Preference number: 6 (lower is better)
Translates to: PMWASVLASPGS*CWVLVQGGVPR
Trigger: TCGTGGAACCCCTCCTTGGACCAACACCCAACACCAGCTCCCAGGGCTTGCCAACACAGAGGCCCACATTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CAA 72 bp GTGGGCCTCTGTGTTGGCAAGCCCTGGGAGCTGGTGTaGGGTGTTGGTCCAAGGAGGGGTTCCACGACTCTA +
Preference number: 6 (lower is better)
Translates to: VGLCVGKPWELV*GVGPRRGSTTL
Trigger: TAGAGTCGTGGAACCCCTCCTTGGACCAACACCCAACACCAGCTCCCAGGGCTTGCCAACACAGAGGCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS CAA 90 bp AGGAGGGTACCGGGCATAGTCGGAGGCTCCAGTGCTTGCTCAGGCTaGGCTGCCCTGAGCAGCTGTGTAAGACAGGGGTTGTTGTCTCTG +
Preference number: 6 (lower is better)
Translates to: RRVPGIVGGSSACSG*AALSSCVRQGLLSL
Trigger: CAGAGACAACAACCCCTGTCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS CAA 90 bp GCCACCAATGTGGGCCTCTGTGTTGGCAAGCCCTGGGAGCTGGTGTaGGGTGTTGGTCCAAGGAGGGGTTCCACGACTCTAAGGGAGTGT +
Preference number: 6 (lower is better)
Translates to: ATNVGLCVGKPWELV*GVGPRRGSTTLREC
Trigger: ACACTCCCTTAGAGTCGTGGAACCCCTCCTTGGACCAACACCCAACACCAGCTCCCAGGGCTTGCCAACACAGAGGCCCACATTGGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154840.3
CDS GCA 72 bp GCCTCAGGTTTCCGGTGCTCATCTGCTTCAGACCCCTaGAGAGGGGTCACGAAACCACACACTGGGCTCTTC +
Preference number: 6 (lower is better)
Translates to: ASGFRCSSASDP*RGVTKPHTGLF
Trigger: GAAGAGCCCAGTGTGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp CTCCAGGATGACAGCCTCAGGTTTCCGGTGCTCATCTaGTTCAGACCCCTGCAGAGGGGTCACGAAACCACA +
Preference number: 6 (lower is better)
Translates to: LQDDSLRFPVLI*FRPLQRGHETT
Trigger: TGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGCTGTCATCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp CATAGTCGGAGGCTCCAGTGCTTGCTCAGGCTTGGCTaGCCTGAGCAGCTGTGTAAGACAGGGGTTGTTGTC +
Preference number: 6 (lower is better)
Translates to: HSRRLQCLLRLG*PEQLCKTGVVV
Trigger: GACAACAACCCCTGTCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000153519.8
CDS GCA 72 bp GGATGTACTCCGCTGTCTTCTGAAGCGTGGTTGCTTTaGTCACCTGCGAGCGCCACCAATGTGGGCCTCTGT +
Preference number: 6 (lower is better)
Translates to: GCTPLSSEAWLL*SPASATNVGLC
Trigger: ACAGAGGCCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153519.8
ENSMUST00000154840.3
CDS GCA 72 bp CATCAGGATGTACTCCGCTGTCTTCTGAAGCGTGGTTaGTTTGCTCACCTGCGAGCGCCACCAATGTGGGCC +
Preference number: 6 (lower is better)
Translates to: HQDVLRCLLKRG*FAHLRAPPMWA
Trigger: GGCCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCCTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153519.8
ENSMUST00000154840.3
CDS CAA 72 bp GCATCAGGATGTACTCCGCTGTCTTCTGAAGCGTGGTaGCTTTGCTCACCTGCGAGCGCCACCAATGTGGGC +
Preference number: 6 (lower is better)
Translates to: ASGCTPLSSEAW*LCSPASATNVG
Trigger: GCCCACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCCTGATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153519.8
ENSMUST00000154840.3
CDS TCA 72 bp CCTCGATGCGCCGCTTCCAGTAATTACCCTCCAGGATaGCAGCCTCAGGTTTCCGGTGCTCATCTGCTTCAG +
Preference number: 6 (lower is better)
Translates to: PRCAASSNYPPG*QPQVSGAHLLQ
Trigger: CTGAAGCAGATGAGCACCGGAAACCTGAGGCTGTCATCCTGGAGGGTAATTACTGGAAGCGGCGCATCGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS CCA 72 bp GCAGCATCAGGATGTACTCCGCTGTCTTCTGAAGCGTaGTTGCTTTGCTCACCTGCGAGCGCCACCAATGTG +
Preference number: 6 (lower is better)
Translates to: AASGCTPLSSEA*LLCSPASATNV
Trigger: CACATTGGTGGCGCTCGCAGGTGAGCAAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCCTGATGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000153519.8
ENSMUST00000154840.3
CDS CAA 72 bp GGAAGGAGAGGGGTCGGTCCAGGAGCAGGTGGGATCTaGGTCTTAGGGTCTTCAGGAAGAAGGAATTCAGAG +
Preference number: 6 (lower is better)
Translates to: GRRGVGPGAGGI*VLGSSGRRNSE
Trigger: CTCTGAATTCCTTCTTCCTGAAGACCCTAAGACCAAGATCCCACCTGCTCCTGGACCGACCCCTCTCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
CDS GCA 72 bp CTTCCACCTGCTTGGGAGCCAGGAAATCCCCTTCCCTaGTGGACTTACGGAGCCGCTTTTTGTAGTAGATTC +
Preference number: 6 (lower is better)
Translates to: LPPAWEPGNPLP*WTYGAAFCSRF
Trigger: GAATCTACTACAAAAAGCGGCTCCGTAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS CCA 72 bp TTCAGACCCCTGCAGAGGGGTCACGAAACCACACACTaGGCTCTTCCTCCGTTGCACATACTGAATGTACCA +
Preference number: 6 (lower is better)
Translates to: FRPLQRGHETTH*ALPPLHILNVP
Trigger: TGGTACATTCAGTATGTGCAACGGAGGAAGAGCCCAGTGTGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS CAA 72 bp TACCAGGCTCTCCAGATGGCGTTGTTCAGCCGGATCTaGTCCCGGCATAGCAACTTGAGGCCTTTGAAGTTC +
Preference number: 6 (lower is better)
Translates to: YQALQMALFSRI*SRHSNLRPLKF
Trigger: GAACTTCAAAGGCCTCAAGTTGCTATGCCGGGACAAGATCCGGCTGAACAACGCCATCTGGAGAGCCTGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8
ENSMUST00000201977.4
CDS GCA 72 bp AAATCTGATATCTCCATGAAGTCATCTAGGCTGGGCTaGAGCGGCGTCAGGTCTGGCTGGATCATGTCAGCA +
Preference number: 6 (lower is better)
Translates to: KSDISMKSSRLG*SGVRSGWIMSA
Trigger: TGCTGACATGATCCAGCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGACTTCATGGAGATATCAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005507.10
ENSMUST00000128691.8
ENSMUST00000129008.5
ENSMUST00000142385.8
ENSMUST00000153519.8