RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MLXIP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038342

Ensembl transcript IDs: ENSMUST00000068237.12, ENSMUST00000111596.8, ENSMUST00000135961.2

Found 484 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGTTGGCAGGCCTCAAACCTGCTTCAGACCTGAGCACAGCACCCTaGCAGGTGCAATGGGCCACTGGAGTCCAGGGCAGCCCTGAGGCG +
Preference number: 1 (lower is better)
Translates to: LLAGLKPASDLSTAP*QVQWATGVQGSPEA
Trigger: CGCCTCAGGGCTGCCCTGGACTCCAGTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAACAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp CCAGGCGATCCAGCAGCCACAGTATCCAACACACCCAAGAGAGGCTaGTGGCCACTGGCAGGCCTGGTGCCACCTGCCACTGAACTCTAC +
Preference number: 1 (lower is better)
Translates to: PGDPAATVSNTPKRG*WPLAGLVPPATELY
Trigger: GTAGAGTTCAGTGGCAGGTGGCACCAGGCCTGCCAGTGGCCAGCAGCCTCTCTTGGGTGTGTTGGATACTGTGGCTGCTGGATCGCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 90 bp TGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTaGAGGAAGGGCTGGGCTTCACGACCCTCTCACAGCAGCGGTTTC +
Preference number: 1 (lower is better)
Translates to: CTAMLWPVACGVWCE*RKGWASRPSHSSGF
Trigger: GAAACCGCTGCTGTGAGAGGGTCGTGAAGCCCAGCCCTTCCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 90 bp CCAAAGTCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTaGTGTGAGTGGAGGAAGGGCTGGGCTTCACGACCCTCTCACAGC +
Preference number: 1 (lower is better)
Translates to: PKSCTAMLWPVACGV*CEWRKGWASRPSHS
Trigger: GCTGTGAGAGGGTCGTGAAGCCCAGCCCTTCCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGACTTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 90 bp GGCGATCCAGCAGCCACAGTATCCAACACACCCAAGAGAGGCTGCTaGCCACTGGCAGGCCTGGTGCCACCTGCCACTGAACTCTACCAG +
Preference number: 1 (lower is better)
Translates to: GDPAATVSNTPKRGC*PLAGLVPPATELYQ
Trigger: CTGGTAGAGTTCAGTGGCAGGTGGCACCAGGCCTGCCAGTGGCCAGCAGCCTCTCTTGGGTGTGTTGGATACTGTGGCTGCTGGATCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 90 bp AAGGGGAGAGAGAGCCAAAGTCCTGCACAGCCATGTTGTGGCCTGTaGCCTGTGGCGTGTGGTGTGAGTGGAGGAAGGGCTGGGCTTCAC +
Preference number: 1 (lower is better)
Translates to: KGRESQSPAQPCCGL*PVACGVSGGRAGLH
Trigger: GTGAAGCCCAGCCCTTCCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGACTTTGGCTCTCTCTCCCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp GACTCCCCCGATCTCTTGCCCATCCTGGTAACAGCCTCTGATGCTTaGTCGGGCAGCTGGGATGGATCCGTCAGGATGGAGGTGGTGGTA +
Preference number: 1 (lower is better)
Translates to: DSPDLLPILVTASDA*SGSWDGSVRMEVVV
Trigger: TACCACCACCTCCATCCTGACGGATCCATCCCAGCTGCCCGAGCAAGCATCAGAGGCTGTTACCAGGATGGGCAAGAGATCGGGGGAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR TCA 90 bp AGGTGGTGGTACTCAGCTGACGGAGGGTACTCAGTACCATTGGCCTaGGGACAGGAAGAGAGCAGTGCTGATCCAGCCAGGAAAGCGCCG +
Preference number: 1 (lower is better)
Translates to: RWWYSADGGYSVPLA*GQEESSADPARKAP
Trigger: CGGCGCTTTCCTGGCTGGATCAGCACTGCTCTCTTCCTGTCCTCAGGCCAATGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR TCA 90 bp GGCAGCTGGGATGGATCCGTCAGGATGGAGGTGGTGGTACTCAGCTaGCGGAGGGTACTCAGTACCATTGGCCTGAGGACAGGAAGAGAG +
Preference number: 1 (lower is better)
Translates to: GSWDGSVRMEVVVLS*RRVLSTIGLRTGRE
Trigger: CTCTCTTCCTGTCCTCAGGCCAATGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGACGGATCCATCCCAGCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR TCA 90 bp AGCTTAGGACTCCCCCGATCTCTTGCCCATCCTGGTAACAGCCTCTaGTGCTTGCTCGGGCAGCTGGGATGGATCCGTCAGGATGGAGGT +
Preference number: 1 (lower is better)
Translates to: SLGLPRSLAHPGNSL*CLLGQLGWIRQDGG
Trigger: ACCTCCATCCTGACGGATCCATCCCAGCTGCCCGAGCAAGCATCAGAGGCTGTTACCAGGATGGGCAAGAGATCGGGGGAGTCCTAAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR TCA 90 bp AAGATGGGATACTGCTGTTGGCAGGCCTCAAACCTGCTTCAGACCTaGGCACAGCACCCTGACAGGTGCAATGGGCCACTGGAGTCCAGG +
Preference number: 1 (lower is better)
Translates to: KMGYCCWQASNLLQT*AQHPDRCNGPLESR
Trigger: CCTGGACTCCAGTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp CCCTTTACCGGGCTCCCTGAGTGCTGCAGAGAACACCTCACCACCTaGAGCATCTCAGAGGCAGCAAAGAGAAGGATGAGGGTCAGGTTC +
Preference number: 1 (lower is better)
Translates to: PFTGLPECCREHLTT*SISEAAKRRMRVRF
Trigger: GAACCTGACCCTCATCCTTCTCTTTGCTGCCTCTGAGATGCTGCAGGTGGTGAGGTGTTCTCTGCAGCACTCAGGGAGCCCGGTAAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp TATCCAACACACCCAAGAGAGGCTGCTGGCCACTGGCAGGCCTGGTaGCACCTGCCACTGAACTCTACCAGAAAATGGGTACCATGTCCC +
Preference number: 1 (lower is better)
Translates to: YPTHPREAAGHWQAW*HLPLNSTRKWVPCP
Trigger: GGGACATGGTACCCATTTTCTGGTAGAGTTCAGTGGCAGGTGGCACCAGGCCTGCCAGTGGCCAGCAGCCTCTCTTGGGTGTGTTGGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp CAAAGGTTCCCAAGATGGGATACTGCTGTTGGCAGGCCTCAAACCTaGTTCAGACCTGAGCACAGCACCCTGACAGGTGCAATGGGCCAC +
Preference number: 1 (lower is better)
Translates to: QRFPRWDTAVGRPQT*FRPEHSTLTGAMGH
Trigger: GTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGGGAACCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp AAAACCACATTCTTCCGGGAGGTACCCTTTACCGGGCTCCCTGAGTaGTGCAGAGAACACCTCACCACCTGCAGCATCTCAGAGGCAGCA +
Preference number: 1 (lower is better)
Translates to: KTTFFREVPFTGLPE*CREHLTTCSISEAA
Trigger: TGCTGCCTCTGAGATGCTGCAGGTGGTGAGGTGTTCTCTGCAGCACTCAGGGAGCCCGGTAAAGGGTACCTCCCGGAAGAATGTGGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp CAGGAAGGGTACGAGGGGGATCTCCAGGCATCTCATGCAGTCACATaGCAATTAAGCTTAGGACTCCCCCGATCTCTTGCCCATCCTGGT +
Preference number: 1 (lower is better)
Translates to: QEGYEGDLQASHAVT*QLSLGLPRSLAHPG
Trigger: ACCAGGATGGGCAAGAGATCGGGGGAGTCCTAAGCTTAATTGGCATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTACCCTTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR CCA 90 bp TGCTGGGGTGCTACAGAGCAAGCCAAGAAGCCTGCTTTCCCTTCATaGGGTGAAGATTCAGGTGACAAGGTGCCTAGAGGAGGGGTACTG +
Preference number: 1 (lower is better)
Translates to: CWGATEQAKKPAFPS*GEDSGDKVPRGGVL
Trigger: CAGTACCCCTCCTCTAGGCACCTTGTCACCTGAATCTTCACCCCATGAAGGGAAAGCAGGCTTCTTGGCTTGCTCTGTAGCACCCCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 90 bp GCCCATTGGAGACCCCAAGTAGAGCAGCCTTGGCTATTCCTAATGTaGCCTTGGTATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGAT +
Preference number: 1 (lower is better)
Translates to: AHWRPQVEQPWLFLM*PWYPGQKSRSGPSD
Trigger: ATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATACCAAGGTCACATTAGGAATAGCCAAGGCTGCTCTACTTGGGGTCTCCAATGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 90 bp CCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGCCTCCTCTTCTaGCAGCTGGTGCATAGCCTTCCGTTAAAAGCGCATAGCACTTTA +
Preference number: 1 (lower is better)
Translates to: PLCCVNHWSTPSLLF*QLVHSLPLKAHSTL
Trigger: TAAAGTGCTATGCGCTTTTAACGGAAGGCTATGCACCAGCTGTCAGAAGAGGAGGCTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 90 bp GACAAGGCCTGGGGAGTTTCTAAGCCACACAGCAGTTTGCATGGCTaGTGCCTTCTTAATCCTGTCCAGTTGGCCTCCACGCCCATTATT +
Preference number: 1 (lower is better)
Translates to: DKAWGVSKPHSSLHG*CLLNPVQLASTPII
Trigger: AATAATGGGCGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCTTAGAAACTCCCCAGGCCTTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 90 bp CATCAGCAGGAACTTCCAAATGGATCAGAAATTCAGGGGACATCCTaGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAGGCAGCACGG +
Preference number: 1 (lower is better)
Translates to: HQQELPNGSEIQGTS*APLFHVVFSGQAAR
Trigger: CCGTGCTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCCAGGATGTCCCCTGAATTTCTGATCCATTTGGAAGTTCCTGCTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 90 bp CCTAGCCTTTCCATGTCTCTACCATCTGTAACACATTGGGACACTTaGACCTTCAGGCGCGTGCCGCCCTCCAAACTCCACTGGTTCAAA +
Preference number: 1 (lower is better)
Translates to: PSLSMSLPSVTHWDT*TFRRVPPSKLHWFK
Trigger: TTTGAACCAGTGGAGTTTGGAGGGCGGCACGCGCCTGAAGGTTCAAGTGTCCCAATGTGTTACAGATGGTAGAGACATGGAAAGGCTAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 90 bp GCCAGAGGAGCACAAGCAGATAAGGATGTGACAGGGGCCAAGTCTTaGAGTCTCAAGAATGGAATTCTAAAGGACCTGTATGATCCCACC +
Preference number: 1 (lower is better)
Translates to: ARGAQADKDVTGAKS*SLKNGILKDLYDPT
Trigger: GGTGGGATCATACAGGTCCTTTAGAATTCCATTCTTGAGACTTCAAGACTTGGCCCCTGTCACATCCTTATCTGCTTGTGCTCCTCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 90 bp GTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTaGCTTCACTTATTGAGCCATCTCACCCACGCAATTTTAACTGTT +
Preference number: 1 (lower is better)
Translates to: VDPEDQTLVVRLSSK*LHLLSHLTHAILTV
Trigger: AACAGTTAAAATTGCGTGGGTGAGATGGCTCAATAAGTGAAGGCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR-3UTR TCA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGGGACAGGCAGCACGGTaGGGCAGGGTCAGGAGAAAA +
Preference number: 2 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRGQAAR*GRVRRK
Trigger: TTTTCTCCTGACCCTGCCTCACCGTGCTGCCTGTCC...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAGGCAGCACGGTGAGGCAGGGAAGCCCTGGCCATGTTaGAATGGCATGGCGACTGCA +
Preference number: 2 (lower is better)
Translates to: GLPSFMWSSQDRQHGEAGKPWPC*NGMATA
Trigger: TGCAGTCGCCATGCCATTTCAACATGGCCAGGGCTT...CCCTGCCTCACCGTGCTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGCTGTGGCGTGTGGTGTaGGTGGAGGAAGGGCTGGGC +
Preference number: 2 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLLWRVV*VEEGLG
Trigger: GCCCAGCCCTTCCTCCACTCACACCACACGCCACAG...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGAAACAGACATGCACCTaGAAGAGCCTGCCAGCACAC +
Preference number: 2 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQKQTCT*KSLPAH
Trigger: GTGTGCTGGCAGGCTCTTTCAGGTGCATGTCTGTTT...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGAAGGAGGGGTGCTGGTaGGAGTGCCAAGGCCCAGCC +
Preference number: 2 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLKEGCW*ECQGPA
Trigger: GGCTGGGCCTTGGCACTCCCACCAGCACCCCTCCTT...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTAGTCCAGGGCAGCCCTaGGGCGGTGTGTCAGGAAGG +
Preference number: 2 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSSPGQP*GGVSGR
Trigger: CCTTCCTGACACACCGCCTCAGGGCTGCCCTGGACT...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TGTTGCGACAGAGGCCAAAAAGTGTGCAGGGGTTGCCAGAGGAGCACAAGCAGACTGAGCACAGCACCCTaGCAGGTGCAATGGGCCACT +
Preference number: 2 (lower is better)
Translates to: CCDRGQKVCRGCQRSTSRLSTAP*QVQWAT
Trigger: AGTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAG...TCTGCTTGTGCTCCTCTGGCAACCCCTGCACACTTTTTGGCCTCTGTCGCAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGAAGGCCCAGCCTACATaGCTTGTGTTCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRKAQPT*LVFFPQ
Trigger: TTGAGGGAAGAACACAAGGCATGTAGGCTGGGCCTT...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGGGGTGCTGGTGGGAGTaGCAAGGCCCAGCCTACATG +
Preference number: 2 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLGCWWE*QGPAYM
Trigger: CATGTAGGCTGGGCCTTGGCACTCCCACCAGCACCC...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGTGGCCTGTGGCGTGTaGTGTGAGTGGAGGAAGGGC +
Preference number: 2 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKVACGV*CEWRKG
Trigger: GCCCTTCCTCCACTCACACCACACGCCACAGGCCAC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGCAGAGGATTAGGTGCTaGTGGAGTCACAAGAAATGG +
Preference number: 2 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRQRIRC*WSHKKW
Trigger: CCATTTCTTGTGACTCCATCAGCACCTAATCCTCTG...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGGGACAGGCAGCACGGTaGGGCAGGGTCAGGAGAAAA +
Preference number: 2 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPGQAAR*GRVRRK
Trigger: TTTTCTCCTGACCCTGCCTCACCGTGCTGCCTGTCC...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGTCCCAGGTAGCTTTGTaGTTTCTCCATTTTGGCCGA +
Preference number: 2 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQSQVAL*FLHFGR
Trigger: TCGGCCAAAATGGAGAAACCACAAAGCTACCTGGGA...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp CCTGGCCGAGGTGTGTGGGACATATTTCCCACAAGCCCTGTGCCTTCATACTCTTCAGGATGGAGGTGGTaGTACTCAGCTGACGGAGGG +
Preference number: 2 (lower is better)
Translates to: PGRGVWDIFPTSPVPSYSSGWRW*YSADGG
Trigger: CCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGA...AGAGTATGAAGGCACAGGGCTTGTGGGAAATATGTCCCACACACCTCGGCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGACAGGGGCCAAGTCTTaGAGTCTCAAGAATGGAATT +
Preference number: 2 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQTGAKS*SLKNGI
Trigger: AATTCCATTCTTGAGACTTCAAGACTTGGCCCCTGT...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGATGACATCTTTGGTCTaGGAACTGTCCTGGTTTGGA +
Preference number: 2 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRMTSLV*ELSWFG
Trigger: TCCAAACCAGGACAGTTCTCAGACCAAAGATGTCAT...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp CTGACCCTGAGGCCAGGCGATCCAGCAGCCACAGTATCCAACACACCCAAGAGATTTTTGTCCTCCAACTaGCTAGTCCAGGGCAGGCTT +
Preference number: 2 (lower is better)
Translates to: LTLRPGDPAATVSNTPKRFLSSN*LVQGRL
Trigger: AAGCCTGCCCTGGACTAGGCAGTTGGAGGACAAAAA...TCTCTTGGGTGTGTTGGATACTGTGGCTGCTGGATCGCCTGGCCTCAGGGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp CTGACCCTGAGGCCAGGCGATCCAGCAGCCACAGTATCCAACACACCCAAGAGAACCCTGCCTCTGCAGTaGCCACTCATAGTGAAAGAA +
Preference number: 2 (lower is better)
Translates to: LTLRPGDPAATVSNTPKRTLPLQ*PLIVKE
Trigger: TTCTTTCACTATGAGTGGGCACTGCAGAGGCAGGGT...TCTCTTGGGTGTGTTGGATACTGTGGCTGCTGGATCGCCTGGCCTCAGGGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp CTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCTCAGGCGACCCTGCCTCTGCAGTaGCCACTCATAGTGAAAGAA +
Preference number: 2 (lower is better)
Translates to: LVENVLVDSRLQEDQAQATLPLQ*PLIVKE
Trigger: TTCTTTCACTATGAGTGGGCACTGCAGAGGCAGGGT...CGCCTGAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp CTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCTCAGGCGAGACAAGACAAGGCCTaGGGAGTTTCTAAGCCACAC +
Preference number: 2 (lower is better)
Translates to: LVENVLVDSRLQEDQAQARQDKA*GVSKPH
Trigger: GTGTGGCTTAGAAACTCCCCAGGCCTTGTCTTGTCT...CGCCTGAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGCCGTCAGGATGGAGGTaGTGGTACTCAGCTGACGGA +
Preference number: 2 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLPSGWR*WYSADG
Trigger: TCCGTCAGCTGAGTACCACCACCTCCATCCTGACGG...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACAGTCCAGGGCAGCCCTaGGGCGGTGTGTCAGGAAGG +
Preference number: 2 (lower is better)
Translates to: AFILFHSNVTATFLLHLHSPGQP*GGVSGR
Trigger: CCTTCCTGACACACCGCCTCAGGGCTGCCCTGGACT...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp AAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGATCACACTGAGCACAGCACCCTaGCAGGTGCAATGGGCCACT +
Preference number: 2 (lower is better)
Translates to: KGWELFPKAFPTSFLKITLSTAP*QVQWAT
Trigger: AGTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAG...TGTGATCTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp CTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCAAGCCCTGGCCATGTTaGAATGGCATGGCGACTGCA +
Preference number: 2 (lower is better)
Translates to: LPASSTRASVSTSSPEAAKPWPC*NGMATA
Trigger: TGCAGTCGCCATGCCATTTCAACATGGCCAGGGCTT...GGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCGAAGGGCCCCAGCTTTaGGGCCTTAGAGGCTCTGGG +
Preference number: 2 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSEGPQL*GLRGSG
Trigger: CCCAGAGCCTCTAAGGCCTCAAAGCTGGGGCCCTTC...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGAAAGAGGTGGTAGCTTaGCCTGCTCTTGCCCACATT +
Preference number: 2 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRKEVVA*PALAHI
Trigger: AATGTGGGCAAGAGCAGGTCAAGCTACCACCTCTTT...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp CCTGTAAACACGTTTTGGGGGAAAGCTGAGGGAGGGCCACCATACTATTCCCATGGCAGGCCTCAAACCTaGTTCAGACCTGAGCACAGC +
Preference number: 2 (lower is better)
Translates to: PVNTFWGKAEGGPPYYSHGRPQT*FRPEHS
Trigger: GCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCC...ATGGGAATAGTATGGTGGCCCTCCCTCAGCTTTCCCCCAAAACGTGTTTACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGCAGTACATTCCTTTCTaGAGAGGTTGGAACAGTAAC +
Preference number: 2 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRQYIPF*RGWNSN
Trigger: GTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTG...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGGAGAACATGCTGGGGTaGTACAGAGCAAGCCAAGAA +
Preference number: 2 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRENMLG*YRASQE
Trigger: TTCTTGGCTTGCTCTGTAGCACCCCAGCATGTTCTC...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCAAAGGTTCCCAAGATaGGATACTGCTGTTGGCAGG +
Preference number: 2 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRQRFPR*DTAVGR
Trigger: CCTGCCAACAGCAGTATCCCATCTTGGGAACCTTTG...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCCTGGTGGCAGCGTCATaGGCTGACTCCTTGACATCT +
Preference number: 2 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGLVAAS*ADSLTS
Trigger: AGATGTCAAGGAGTCAGCCCATGACGCTGCCACCAG...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACAAGGAGGGGTGCTGGTaGGAGTGCCAAGGCCCAGCC +
Preference number: 2 (lower is better)
Translates to: AFILFHSNVTATFLLHLHKEGCW*ECQGPA
Trigger: GGCTGGGCCTTGGCACTCCCACCAGCACCCCTCCTT...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp CTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCCCCAGTCAAACAGTGTaGTCAGCGCCCATTGGAGAC +
Preference number: 2 (lower is better)
Translates to: LPASSTRASVSTSSPEAAPSQTV*SAPIGD
Trigger: GTCTCCAATGGGCGCTGACCACACTGTTTGACTGGG...GGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 90 bp CACACACCCAGTTTCTCTCAGGAGGCCCTAGTGAGACAGAGACCCTaGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGACATTG +
Preference number: 2 (lower is better)
Translates to: HTPSFSQEALVRQRP*RSQGRMNRQRFLTL
Trigger: CAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCACTAGGGCCTCCTGAGAGAAACTGGGTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp CTGACCCTGAGGCCAGGCGATCCAGCAGCCACAGTATCCAACACACCCAAGAGAGTGGCCTTCACCTTCTaGAGAACAATTTCACCTTGT +
Preference number: 2 (lower is better)
Translates to: LTLRPGDPAATVSNTPKRVAFTF*RTISPC
Trigger: ACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCAC...TCTCTTGGGTGTGTTGGATACTGTGGCTGCTGGATCGCCTGGCCTCAGGGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp ACACAAGGGAGGCAGTACATTCCTTTCTGCAGAGGTTGGAACAGTAACCCAGAGGGCAGGCCTCAAACCTaGTTCAGACCTGAGCACAGC +
Preference number: 2 (lower is better)
Translates to: TQGRQYIPFCRGWNSNPEGRPQT*FRPEHS
Trigger: GCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCC...CTCTGGGTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTGCCTCCCTTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AAAGGTTCCCAAGATGGGATACTGCTGTTGGCAGGCCTCAAACCTGCTTCAGACAGAGGCCAAAAAGTGTaGAGGGGTTGCCAGAGGAGC +
Preference number: 2 (lower is better)
Translates to: KGSQDGILLLAGLKPASDRGQKV*RGCQRS
Trigger: GCTCCTCTGGCAACCCCTGCACACTTTTTGGCCTCT...GTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGGGAACCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGCTCCCCTCTTTCATGTaGTCTTCTCAGGACAGGCAG +
Preference number: 2 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKLPSFM*SSQDRQ
Trigger: CTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAG...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGTCAGGGCCCTCTGATTaGGCAGATTCATCAGGCAAG +
Preference number: 2 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLSGPSD*ADSSGK
Trigger: CTTGCCTGATGAATCTGCCCAATCAGAGGGCCCTGA...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 90 bp TTAAAAATGCATTGTAGTGTTGGGTACAGCTGGTGGAAAACGTGCTaGTCGACAGCAGGCTTCAAGAGGACCAGGCTCAGGCGAGCAGCC +
Preference number: 2 (lower is better)
Translates to: LKMHCSVGYSWWKTC*STAGFKRTRLRRAA
Trigger: GGCTGCTCGCCTGAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCCAACACTACAATGCATTTTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp CCTGGCCGAGGTGTGTGGGACATATTTCCCACAAGCCCTGTGCCTTCATACTCTGATAAAAGACCTGGATaGCAGCAGCATCATGGAGTG +
Preference number: 2 (lower is better)
Translates to: PGRGVWDIFPTSPVPSYSDKRPG*QQHHGV
Trigger: CACTCCATGATGCTGCTGTCATCCAGGTCTTTTATC...AGAGTATGAAGGCACAGGGCTTGTGGGAAATATGTCCCACACACCTCGGCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGAAGATCCAGGGTTCATaGCTGGGCCACATGAGAATC +
Preference number: 2 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKKIQGS*LGHMRI
Trigger: GATTCTCATGTGGCCCAGTCATGAACCCTGGATCTT...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGACAGGCTTGAGCAAGTaGGCATGCACACACACGTTA +
Preference number: 2 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKTGLSK*ACTHTL
Trigger: TAACGTGTGTGTGCATGCGCACTTGCTCAAGCCTGT...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGCAAAGGTTCCCAAGATaGGATACTGCTGTTGGCAGG +
Preference number: 2 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPQRFPR*DTAVGR
Trigger: CCTGCCAACAGCAGTATCCCATCTTGGGAACCTTTG...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AAGCTGAAACTTGAAGAACTTGAAGGAGAACATGCTGGGGTGCTACAGAGCAAGGAAAAGGAGGGGTGCTaGTGGGAGTGCCAAGGCCCA +
Preference number: 2 (lower is better)
Translates to: KLKLEELEGEHAGVLQSKEKEGC*WECQGP
Trigger: TGGGCCTTGGCACTCCCACCAGCACCCCTCCTTTTC...CTTGCTCTGTAGCACCCCAGCATGTTCTCCTTCAAGTTCTTCAAGTTTCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCGGCGTGTGGTGTGAGTaGAGGAAGGGCTGGGCTTCA +
Preference number: 2 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSGVWCE*RKGWAS
Trigger: TGAAGCCCAGCCCTTCCTCCACTCACACCACACGCC...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCGGTACTCAGTACCATTaGCCTGAGGACAGGAAGAGA +
Preference number: 2 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGGTQYH*PEDRKR
Trigger: TCTCTTCCTGTCCTCAGGCCAATGGTACTGAGTACC...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR CAA 90 bp CCACACAGCAGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCAGTaGGCCTCCACGCCCATTATTTTCCATGTGATCTCAGGGGTTTGT +
Preference number: 2 (lower is better)
Translates to: PHSSLHGWCLLNPVQ*ASTPIIFHVISGVC
Trigger: ACAAACCCCTGAGATCACATGGAAAATAATGGGCGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGATAAAAGACCTGGATaGCAGCAGCATCATGGAGTG +
Preference number: 2 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKDKRPG*QQHHGV
Trigger: CACTCCATGATGCTGCTGTCATCCAGGTCTTTTATC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp CCATGCTGGCTGACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCTGGCTATTCCTAATGTaGCCTTGGTATCCAGGACAG +
Preference number: 2 (lower is better)
Translates to: PCWLTTSSLFYKSQCVNIWLFLM*PWYPGQ
Trigger: CTGTCCTGGATACCAAGGTCACATTAGGAATAGCCA...GATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGTCAGCCAGCATGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp AAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGATCACAGAAGTTTCTTCTGTGTaGGTGGGGACAGGAATGGGG +
Preference number: 2 (lower is better)
Translates to: KGWELFPKAFPTSFLKITEVSSV*VGTGMG
Trigger: CCCCATTCCTGTCCCCACTCACACAGAAGAAACTTC...TGTGATCTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACTCAGGCAAGCCAGGTTaGCTGCTGACCTCCCTTCTG +
Preference number: 2 (lower is better)
Translates to: AFILFHSNVTATFLLHLHSGKPG*LLTSLL
Trigger: CAGAAGGGAGGTCAGCAGTCAACCTGGCTTGCCTGA...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTAGCCACACAGCAGTTTaGATGGCTGGTGCCTTCTTA +
Preference number: 2 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSSHTAV*MAGAFL
Trigger: TAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCT...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGCACTGGCAGGCCTGGTaGCACCTGCCACTGAACTCT +
Preference number: 2 (lower is better)
Translates to: YTISAFKRMPDPVRESQRHWQAW*HLPLNS
Trigger: AGAGTTCAGTGGCAGGTGGCACCAGGCCTGCCAGTG...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCCACAGCAATGTAACTaGCACTTTCCTCTTACACTT +
Preference number: 2 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRPQQCN*HFPLTL
Trigger: AAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGG...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCAGTTGGCCTCCACGCCCATTATGATCATGCTGAACTaGAGGACGTGGGTTAAGGAG +
Preference number: 2 (lower is better)
Translates to: SLHGWCLLNPVQLASTPIMIMLN*RTWVKE
Trigger: CTCCTTAACCCACGTCCTGCAGTTCAGCATGATCAT...AATGGGCGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGAGCAGTTTGCATGGCTaGTGCCTTCTTAATCCTGTC +
Preference number: 2 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPSSLHG*CLLNPV
Trigger: GACAGGATTAAGAAGGCACCAGCCATGCAAACTGCT...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACCTTTACCAGCTAGCCTaGTGGCAGCGTCATGGGCTG +
Preference number: 2 (lower is better)
Translates to: AFILFHSNVTATFLLHLHLYQLA*WQRHGL
Trigger: CAGCCCATGACGCTGCCACCAGGCTAGCTGGTAAAG...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp ACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCCCCTCCAAACTCCACTaGTTCAAATCTGAGCACAGC +
Preference number: 2 (lower is better)
Translates to: TTSSLFYKSQCVNIKSRSPSKLH*FKSEHS
Trigger: GCTGTGCTCAGATTTGAACCAGTGGAGTTTGGAGGG...GCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTGATTTCAAAGCACTGTaGCCTCGCAGCCATGGCAAA +
Preference number: 2 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSDFKAL*PRSHGK
Trigger: TTTGCCATGGCTGCGAGGCCACAGTGCTTTGAAATC...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 90 bp AGCACTTTACCAGCTAGCCTGGTGGCAGCGTCATGGGCTGACTCCTaGACATCTTGCCTGACAGCATTTCGTTTCTTCCTCCTTATTCAT +
Preference number: 2 (lower is better)
Translates to: STLPASLVAASWADS*TSCLTAFRFFLLIH
Trigger: ATGAATAAGGAGGAAGAAACGAAATGCTGTCAGGCAAGATGTCAAGGAGTCAGCCCATGACGCTGCCACCAGGCTAGCTGGTAAAGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCGTGGCCTTCACCTTCTaGAGAACAATTTCACCTTGT +
Preference number: 2 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGVAFTF*RTISPC
Trigger: ACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCAC...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACGGTGCCACCTGCCACTaGACTCTACCAGAAAATGGG +
Preference number: 2 (lower is better)
Translates to: AFILFHSNVTATFLLHLHGATCH*TLPENG
Trigger: CCCATTTTCTGGTAGAGTTCAGTGGCAGGTGGCACC...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGTCAGTACCATTGGCCTaGGGACAGGAAGAGAGCAGT +
Preference number: 2 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGSVPLA*GQEESS
Trigger: ACTGCTCTCTTCCTGTCCTCAGGCCAATGGTACTGA...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGATCACAAGCCACACAGCAGTTTaGATGGCTGGTGCCTTCTTA +
Preference number: 2 (lower is better)
Translates to: KGWELFPKAFPTSFLKITSHTAV*MAGAFL
Trigger: TAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCT...TGTGATCTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGATCACAATGGGATACTGCTGTTaGCAGGCCTCAAACCTGCTT +
Preference number: 2 (lower is better)
Translates to: KGWELFPKAFPTSFLKITMGYCC*QASNLL
Trigger: AAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCAT...TGTGATCTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCCCTTTCTGCAGAGGTTaGAACAGTAACCCAGAGGAT +
Preference number: 2 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLPFCRG*NSNPED
Trigger: ATCCTCTGGGTTACTGTTCCAACCTCTGCAGAAAGG...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp CTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTGAGCAGTTTGCATGGCTaGTGCCTTCTTAATCCTGTC +
Preference number: 2 (lower is better)
Translates to: LKNNFTLSLGKGGVLVGVSSLHG*CLLNPV
Trigger: GACAGGATTAAGAAGGCACCAGCCATGCAAACTGCT...CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGCAGGAACTTCCAAATaGATCAGAAATTCAGGGGAC +
Preference number: 2 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKAGTSK*IRNSGD
Trigger: GTCCCCTGAATTTCTGATCCATTTGGAAGTTCCTGC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCGCAGGAACTTCCAAATaGATCAGAAATTCAGGGGAC +
Preference number: 2 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGAGTSK*IRNSGD
Trigger: GTCCCCTGAATTTCTGATCCATTTGGAAGTTCCTGC...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp GAGTTTCTAAGCCACACAGCAGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCTCCTTGTTTTTCACTTaGTGGCCCTGGACCCCAATA +
Preference number: 2 (lower is better)
Translates to: EFLSHTAVCMAGAFLILSSLFFT*WPWTPI
Trigger: TATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGA...GGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCTTAGAAACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp CTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCCAGTACATTCCTTTCTaGAGAGGTTGGAACAGTAAC +
Preference number: 2 (lower is better)
Translates to: LPASSTRASVSTSSPEAAQYIPF*RGWNSN
Trigger: GTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTG...GGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGATGGGATACTGCTGTTaGCAGGCCTCAAACCTGCTT +
Preference number: 2 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGMGYCC*QASNLL
Trigger: AAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCAT...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCTGGAGTCACAAGAAATaGAGAGACTTCACTGTTGCG +
Preference number: 2 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLWSHKK*RDFTVA
Trigger: CGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCA...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCATTTCACCTTGTCCTTaGGAAAAGGAGGGGTGCTGG +
Preference number: 2 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSISPCP*EKEGCW
Trigger: CCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAAT...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GATGGCTTATTCAGATTTCACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTTGGCGTGTGGTGTGAGTaGAGGAAGGGCTGGGCTTCA +
Preference number: 2 (lower is better)
Translates to: DGLFRFHRNTCRDFPGSFGVWCE*RKGWAS
Trigger: TGAAGCCCAGCCCTTCCTCCACTCACACCACACGCC...AAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGTGAAATCTGAATAAGCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGCCAAGAGAAAGGAAATaGGGACACTCTCAAAACCAA +
Preference number: 2 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPPRERK*GHSQNQ
Trigger: TTGGTTTTGAGAGTGTCCCCATTTCCTTTCTCTTGG...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp ACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCACAGTGCCACCATTTTaGAGTTTCTTCTGTGTGAGT +
Preference number: 2 (lower is better)
Translates to: TTSSLFYKSQCVNIKSRSTVPPF*SFFCVS
Trigger: ACTCACACAGAAGAAACTTCAAAATGGTGGCACTGT...GCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCACAGGCTTGAGCAAGTaGGCATGCACACACACGTTA +
Preference number: 2 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSTGLSK*ACTHTL
Trigger: TAACGTGTGTGTGCATGCGCACTTGCTCAAGCCTGT...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCTGGCTATTCCTAATGTaGCCTTGGTATCCAGGACAG +
Preference number: 2 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSWLFLM*PWYPGQ
Trigger: CTGTCCTGGATACCAAGGTCACATTAGGAATAGCCA...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp GCAATTTTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCCGGCCTGTGGTTGCTAGGAACTaGACTCAGGACCTCTGGAGA +
Preference number: 2 (lower is better)
Translates to: AILTVSLTGVTLYNLGRPVVARN*TQDLWR
Trigger: TCTCCAGAGGTCCTGAGTTCAGTTCCTAGCAACCAC...AGGCCGGCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAAAATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR-3UTR GCA 90 bp GATGGCTTATTCAGATTTCACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTTGCACCTGAAAGAGCCTaGCAGCACACACACACACAC +
Preference number: 2 (lower is better)
Translates to: DGLFRFHRNTCRDFPGSFAPERA*QHTHTH
Trigger: GTGTGTGTGTGTGTGCTGGCAGGCTCTTTCAGGTGC...AAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGTGAAATCTGAATAAGCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGTCATATTCTCCACAGTaGCACCATTTTGAAGTTTCT +
Preference number: 2 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPSYSPQ*HHFEVS
Trigger: AGAAACTTCAAAATGGTGGCACTGTGGAGAATATGA...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AAGCTGAAACTTGAAGAACTTGAAGGAGAACATGCTGGGGTGCTACAGAGCAAGATAGTCAGTGTCTCCTaGCTGCCCTTACACAATCTC +
Preference number: 2 (lower is better)
Translates to: KLKLEELEGEHAGVLQSKIVSVS*LPLHNL
Trigger: GAGATTGTGTAAGGGCAGGCAGGAGACACTGACTAT...CTTGCTCTGTAGCACCCCAGCATGTTCTCCTTCAAGTTCTTCAAGTTTCAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp AAGCTGAAACTTGAAGAACTTGAAGGAGAACATGCTGGGGTGCTACAGAGCAAGCCTTTCTGCAGAGGTTaGAACAGTAACCCAGAGGAT +
Preference number: 2 (lower is better)
Translates to: KLKLEELEGEHAGVLQSKPFCRG*NSNPED
Trigger: ATCCTCTGGGTTACTGTTCCAACCTCTGCAGAAAGG...CTTGCTCTGTAGCACCCCAGCATGTTCTCCTTCAAGTTCTTCAAGTTTCAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGCAGAGGATTAGGTGCTaGTGGAGTCACAAGAAATGG +
Preference number: 2 (lower is better)
Translates to: YTISAFKRMPDPVRESQRQRIRC*WSHKKW
Trigger: CCATTTCTTGTGACTCCATCAGCACCTAATCCTCTG...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGGAGAGACTTCACTGTTaGGACAGAGGCCAAAAAGTG +
Preference number: 2 (lower is better)
Translates to: YTISAFKRMPDPVRESQRERLHC*DRGQKV
Trigger: CACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTC...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGGCACCTGAAAGAGCCTaGCAGCACACACACACACAC +
Preference number: 2 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERAPERA*QHTHTH
Trigger: GTGTGTGTGTGTGTGCTGGCAGGCTCTTTCAGGTGC...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp AAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGATCACATCATATTCTCCACAGTaGCACCATTTTGAAGTTTCT +
Preference number: 2 (lower is better)
Translates to: KGWELFPKAFPTSFLKITSYSPQ*HHFEVS
Trigger: AGAAACTTCAAAATGGTGGCACTGTGGAGAATATGA...TGTGATCTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp GATGAAAATAACTGTAAACAAACCCCAGTCAAACAGTGTGGTCAGCGCCCATTGATGACAGCAGCATCATaGAGTGTGACCTTTGAATGC +
Preference number: 2 (lower is better)
Translates to: DENNCKQTPVKQCGQRPLMTAAS*SVTFEC
Trigger: GCATTCAAAGGTCACACTCCATGATGCTGCTGTCAT...CAATGGGCGCTGACCACACTGTTTGACTGGGGTTTGTTTACAGTTATTTTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCTCCCCTCTTTCATGTaGTCTTCTCAGGACAGGCAG +
Preference number: 2 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERLPSFM*SSQDRQ
Trigger: CTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAG...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCAACTCTACCAGAAAATaGGTACCATGTCCCCTAAGA +
Preference number: 2 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSNSTRK*VPCPLR
Trigger: TCTTAGGGGACATGGTACCCATTTTCTGGTAGAGTT...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp CATTTTGGCCGATATTCATATTCTCCACAGTGCCACCATTTTGAAGTTTCTTCTCAGCCATGGCAAAGGTaGGCACCAAGAGAAAGGAAA +
Preference number: 2 (lower is better)
Translates to: HFGRYSYSPQCHHFEVSSQPWQR*APRERK
Trigger: TTTCCTTTCTCTTGGTGCTCACCTTTGCCATGGCTG...AGAAGAAACTTCAAAATGGTGGCACTGTGGAGAATATGAATATCGGCCAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAAAGTTGAACTTCTCTaGAACACAGGCATTCTAGGG +
Preference number: 2 (lower is better)
Translates to: YTISAFKRMPDPVRESQRKVELL*NTGILG
Trigger: CCCTAGAATGCCTGTGTTTCAGAGAAGTTCAACTTT...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp GATGGCTTATTCAGATTTCACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTTTCCTTGTTTTTCACTTaGTGGCCCTGGACCCCAATA +
Preference number: 2 (lower is better)
Translates to: DGLFRFHRNTCRDFPGSFSLFFT*WPWTPI
Trigger: TATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGA...AAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGTGAAATCTGAATAAGCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR GCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGAAGGCCCAGCCTACATaGCTTGTGTTCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERKAQPT*LVFFPQ
Trigger: TTGAGGGAAGAACACAAGGCATGTAGGCTGGGCCTT...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CCA 90 bp CATTTTGGCCGATATTCATATTCTCCACAGTGCCACCATTTTGAAGTTTCTTCTGATTTCAAAGCACTGTaGCCTCGCAGCCATGGCAAA +
Preference number: 2 (lower is better)
Translates to: HFGRYSYSPQCHHFEVSSDFKAL*PRSHGK
Trigger: TTTGCCATGGCTGCGAGGCCACAGTGCTTTGAAATC...AGAAGAAACTTCAAAATGGTGGCACTGTGGAGAATATGAATATCGGCCAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR TCA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGGCCATCTCTGCAGCCTaGCCATACTACTTTTTGAAA +
Preference number: 2 (lower is better)
Translates to: CPQVQILPAATFQALCLQAISAA*PYYFLK
Trigger: TTTCAAAAAGTAGTATGGTCAGGCTGCAGAGATGGC...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR-3UTR CCA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGTTGAAGTCTCAAGAATaGAATTCTAAAGGACCTGTA +
Preference number: 2 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGLKSQE*NSKGPV
Trigger: TACAGGTCCTTTAGAATTCCATTCTTGAGACTTCAA...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp ACAGGTGCAATGGGCCACTGGAGTCCAGGGCAGCCCTaGGGCGGTGTGTCAGGAAGGGTACGAGGGGGATCT +
Preference number: 3 (lower is better)
Translates to: TGAMGHWSPGQP*GGVSGRVRGGS
Trigger: AGATCCCCCTCGTACCCTTCCTGACACACCGCCTCAGGGCTGCCCTGGACTCCAGTGGCCCATTGCACCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp GGCCTCAAACCTGCTTCAGACCTGAGCACAGCACCCTaGCAGGTGCAATGGGCCACTGGAGTCCAGGGCAGC +
Preference number: 3 (lower is better)
Translates to: GLKPASDLSTAP*QVQWATGVQGS
Trigger: GCTGCCCTGGACTCCAGTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp GGGGAGAGAGAGCCAAAGTCCTGCACAGCCATGTTGTaGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGG +
Preference number: 3 (lower is better)
Translates to: GEREPKSCTAML*PVACGVWCEWR
Trigger: CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGACTTTGGCTCTCTCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp GCAGCCACAGTATCCAACACACCCAAGAGAGGCTGCTaGCCACTGGCAGGCCTGGTGCCACCTGCCACTGAA +
Preference number: 3 (lower is better)
Translates to: AATVSNTPKRGC*PLAGLVPPATE
Trigger: TTCAGTGGCAGGTGGCACCAGGCCTGCCAGTGGCCAGCAGCCTCTCTTGGGTGTGTTGGATACTGTGGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp CTCCCCCGATCTCTTGCCCATCCTGGTAACAGCCTCTaGTGCTTGCTCGGGCAGCTGGGATGGATCCGTCAG +
Preference number: 3 (lower is better)
Translates to: LPRSLAHPGNSL*CLLGQLGWIRQ
Trigger: CTGACGGATCCATCCCAGCTGCCCGAGCAAGCATCAGAGGCTGTTACCAGGATGGGCAAGAGATCGGGGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR CCA 72 bp GTGGCCTGTGGCGTGTGGTGTGAGTGGAGGAAGGGCTaGGCTTCACGACCCTCTCACAGCAGCGGTTTCATT +
Preference number: 3 (lower is better)
Translates to: VACGVWCEWRKG*ASRPSHSSGFI
Trigger: AATGAAACCGCTGCTGTGAGAGGGTCGTGAAGCCCAGCCCTTCCTCCACTCACACCACACGCCACAGGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp GCTCGGGCAGCTGGGATGGATCCGTCAGGATGGAGGTaGTGGTACTCAGCTGACGGAGGGTACTCAGTACCA +
Preference number: 3 (lower is better)
Translates to: ARAAGMDPSGWR*WYSADGGYSVP
Trigger: TGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGACGGATCCATCCCAGCTGCCCGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR GCA 72 bp TTCCGGGAGGTACCCTTTACCGGGCTCCCTGAGTGCTaGAGAGAACACCTCACCACCTGCAGCATCTCAGAG +
Preference number: 3 (lower is better)
Translates to: FREVPFTGLPEC*REHLTTCSISE
Trigger: CTCTGAGATGCTGCAGGTGGTGAGGTGTTCTCTGCAGCACTCAGGGAGCCCGGTAAAGGGTACCTCCCGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp CCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTaGCAAGGCCCAGCCTACATGCCTTGTGTTCTTCCC +
Preference number: 3 (lower is better)
Translates to: PCPWEKEGCWWE*QGPAYMPCVLP
Trigger: GGGAAGAACACAAGGCATGTAGGCTGGGCCTTGGCACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp CGGGCAGCTGGGATGGATCCGTCAGGATGGAGGTGGTaGTACTCAGCTGACGGAGGGTACTCAGTACCATTG +
Preference number: 3 (lower is better)
Translates to: RAAGMDPSGWRW*YSADGGYSVPL
Trigger: CAATGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGACGGATCCATCCCAGCTGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR CCA 72 bp ATGCTTGCTCGGGCAGCTGGGATGGATCCGTCAGGATaGAGGTGGTGGTACTCAGCTGACGGAGGGTACTCA +
Preference number: 3 (lower is better)
Translates to: MLARAAGMDPSG*RWWYSADGGYS
Trigger: TGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGACGGATCCATCCCAGCTGCCCGAGCAAGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGCTCCTTGTTTTTCACTaGCTGGCCCTGGACCCCAAT +
Preference number: 3 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRLLVFH*LALDPN
Trigger: ATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAG...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAGGCAGCACGGTGAGGCAGGGCTCCTTGTTTTTCACTaGCTGGCCCTGGACCCCAAT +
Preference number: 3 (lower is better)
Translates to: GLPSFMWSSQDRQHGEAGLLVFH*LALDPN
Trigger: ATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAG...CCCTGCCTCACCGTGCTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp TACTGCTGTTGGCAGGCCTCAAACCTGCTTCAGACCTaGGCACAGCACCCTGACAGGTGCAATGGGCCACTG +
Preference number: 3 (lower is better)
Translates to: YCCWQASNLLQT*AQHPDRCNGPL
Trigger: CAGTGGCCCATTGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp GGGCTCCCTGAGTGCTGCAGAGAACACCTCACCACCTaGAGCATCTCAGAGGCAGCAAAGAGAAGGATGAGG +
Preference number: 3 (lower is better)
Translates to: GLPECCREHLTT*SISEAAKRRMR
Trigger: CCTCATCCTTCTCTTTGCTGCCTCTGAGATGCTGCAGGTGGTGAGGTGTTCTCTGCAGCACTCAGGGAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp TTCTTCCGGGAGGTACCCTTTACCGGGCTCCCTGAGTaGTGCAGAGAACACCTCACCACCTGCAGCATCTCA +
Preference number: 3 (lower is better)
Translates to: FFREVPFTGLPE*CREHLTTCSIS
Trigger: TGAGATGCTGCAGGTGGTGAGGTGTTCTCTGCAGCACTCAGGGAGCCCGGTAAAGGGTACCTCCCGGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTTCCTGCACAGCCATGTaGTGGCCTGTGGCCTGTGGC +
Preference number: 3 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSSCTAM*WPVACG
Trigger: GCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGGACTCCCCCGATCTCTaGCCCATCCTGGTAACAGCC +
Preference number: 3 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLDSPDL*PILVTA
Trigger: GGCTGTTACCAGGATGGGCAAGAGATCGGGGGAGTC...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR TCA 72 bp GGCCTTAGAGGCTCTGGGCCGAAGCCCTGGCCATGTTaGAATGGCATGGCGACTGCAATGCAGATAGGACTA +
Preference number: 3 (lower is better)
Translates to: GLRGSGPKPWPC*NGMATAMQIGL
Trigger: TAGTCCTATCTGCATTGCAGTCGCCATGCCATTTCAACATGGCCAGGGCTTCGGCCCAGAGCCTCTAAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp GATGGATCCGTCAGGATGGAGGTGGTGGTACTCAGCTaGCGGAGGGTACTCAGTACCATTGGCCTGAGGACA +
Preference number: 3 (lower is better)
Translates to: DGSVRMEVVVLS*RRVLSTIGLRT
Trigger: TGTCCTCAGGCCAATGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGACGGATCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR GCA 72 bp CCAAGATGGGATACTGCTGTTGGCAGGCCTCAAACCTaGTTCAGACCTGAGCACAGCACCCTGACAGGTGCA +
Preference number: 3 (lower is better)
Translates to: PRWDTAVGRPQT*FRPEHSTLTGA
Trigger: TGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp CACCTGCAGGCACAGGTTGTCTCCTTGTTTTTCACTTaGTGGCCCTGGACCCCAATACAACTCCAGGCGGAC +
Preference number: 3 (lower is better)
Translates to: HLQAQVVSLFFT*WPWTPIQLQAD
Trigger: GTCCGCCTGGAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGCCTGCAGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp CTGCAGGCACAGGTTGTCTCCTTGTTTTTCACTTGCTaGCCCTGGACCCCAATACAACTCCAGGCGGACAGG +
Preference number: 3 (lower is better)
Translates to: LQAQVVSLFFTC*PWTPIQLQADR
Trigger: CCTGTCCGCCTGGAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGCCTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGGAAGCCCTGGCCATGTaGAAATGGCATGGCGACTGC +
Preference number: 3 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLEALAM*KWHGDC
Trigger: GCAGTCGCCATGCCATTTCAACATGGCCAGGGCTTC...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGAAGCCCTGGCCATGTaGAAATGGCATGGCGACTGC +
Preference number: 3 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKEALAM*KWHGDC
Trigger: GCAGTCGCCATGCCATTTCAACATGGCCAGGGCTTC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp TCAGGAAGGGTACGAGGGGGATCTCCAGGCATCTCATaGAGTCACATGCCAATTAAGCTTAGGACTCCCCCG +
Preference number: 3 (lower is better)
Translates to: SGRVRGGSPGIS*SHMPIKLRTPP
Trigger: CGGGGGAGTCCTAAGCTTAATTGGCATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTACCCTTCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR CCA 72 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTaGACCCCAATACAACTCCAGGCGGACAGGACAGGA +
Preference number: 3 (lower is better)
Translates to: AQVVSLFFTCWP*TPIQLQADRTG
Trigger: TCCTGTCCTGTCCGCCTGGAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCTCAGGCGGACAGGGGCCAAGTCTaGAAGTCTCAAGAATGGAAT +
Preference number: 3 (lower is better)
Translates to: LVENVLVDSRLQEDQAQADRGQV*KSQEWN
Trigger: ATTCCATTCTTGAGACTTCAAGACTTGGCCCCTGTC...CGCCTGAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTTGTGGTCAGCGCCCATaGGAGACCCCAAGTAGAGCA +
Preference number: 3 (lower is better)
Translates to: PLPASSTRASVSTSSPEACGQRP*ETPSRA
Trigger: TGCTCTACTTGGGGTCTCCAATGGGCGCTGACCACA...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGACTTTCCTCTTACACTaGCACAGACCCAGAACGGGT +
Preference number: 3 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRTFLLH*HRPRTG
Trigger: ACCCGTTCTGGGTCTGTGCAAGTGTAAGAGGAAAGT...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp TCCATGTCTCTACCATCTGTAACACATTGGGACACTTaGACCTTCAGGCGCGTGCCGCCCTCCAAACTCCAC +
Preference number: 3 (lower is better)
Translates to: SMSLPSVTHWDT*TFRRVPPSKLH
Trigger: GTGGAGTTTGGAGGGCGGCACGCGCCTGAAGGTTCAAGTGTCCCAATGTGTTACAGATGGTAGAGACATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCTAGGAACTaGACTCAGGACCTCTGGAGAGCAGCCAGTGCTCTT +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVARN*TQDLWRAASAL
Trigger: AAGAGCACTGGCTGCTCTCCAGAGGTCCTGAGTTCAGTTCCTAGCAACCACATGGTGGCTCACAACCATCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR GCA 72 bp CATAGCACTTTAGCCAGAGCTACCCTGCCTCTGCAGTaGCCACTCATAGTGAAAGAACGGGCAGAACACGCA +
Preference number: 3 (lower is better)
Translates to: HSTLARATLPLQ*PLIVKERAEHA
Trigger: TGCGTGTTCTGCCCGTTCTTTCACTATGAGTGGGCACTGCAGAGGCAGGGTAGCTCTGGCTAAAGTGCTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp GATCCAGGGTTCATGACTGGGCCACATGAGAATCCATaGTGGCTGACCACTTCCAGCCTCTTCTACAAGAGC +
Preference number: 3 (lower is better)
Translates to: DPGFMTGPHENP*WLTTSSLFYKS
Trigger: GCTCTTGTAGAAGAGGCTGGAAGTGGTCAGCCAGCATGGATTCTCATGTGGCCCAGTCATGAACCCTGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp TACGAGGGGGATCTCCAGGCATCTCATGCAGTCACATaGCAATTAAGCTTAGGACTCCCCCGATCTCTTGCC +
Preference number: 3 (lower is better)
Translates to: YEGDLQASHAVT*QLSLGLPRSLA
Trigger: GGCAAGAGATCGGGGGAGTCCTAAGCTTAATTGGCATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
3UTR CCA 72 bp TCACGGAGTAGGAGGTCACAGCAAAGGTTCCCAAGATaGGATACTGCTGTTGGCAGGCCTCAAACCTGCTTC +
Preference number: 3 (lower is better)
Translates to: SRSRRSQQRFPR*DTAVGRPQTCF
Trigger: GAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGGGAACCTTTGCTGTGACCTCCTACTCCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp TGGGGAGTTTCTAAGCCACACAGCAGTTTGCATGGCTaGTGCCTTCTTAATCCTGTCCAGTTGGCCTCCACG +
Preference number: 3 (lower is better)
Translates to: WGVSKPHSSLHG*CLLNPVQLAST
Trigger: CGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCTTAGAAACTCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCTGTAAACACGTTTTGGGGGAAAGCTGAGGGAGGGCCACCATACTATTCCCATCCCAGCCTACATGCCTaGTGTTCTTCCCTCAACCTG +
Preference number: 3 (lower is better)
Translates to: PVNTFWGKAEGGPPYYSHPSLHA*CSSLNL
Trigger: CAGGTTGAGGGAAGAACACAAGGCATGTAGGCTGGG...ATGGGAATAGTATGGTGGCCCTCCCTCAGCTTTCCCCCAAAACGTGTTTACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp GACCTGGATGACAGCAGCATCATGGAGTGTGACCTTTaGATGCTAAAACCAAGGGGGACACCATCCCAGGAG +
Preference number: 3 (lower is better)
Translates to: DLDDSSIMECDL*MLKPRGTPSQE
Trigger: CTCCTGGGATGGTGTCCCCCTTGGTTTTAGCATTCAAAGGTCACACTCCATGATGCTGCTGTCATCCAGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp TGTGTAAACCACTGGAGCACTCCCAGCCTCCTCTTCTaGCAGCTGGTGCATAGCCTTCCGTTAAAAGCGCAT +
Preference number: 3 (lower is better)
Translates to: CVNHWSTPSLLF*QLVHSLPLKAH
Trigger: ATGCGCTTTTAACGGAAGGCTATGCACCAGCTGTCAGAAGAGGAGGCTGGGAGTGCTCCAGTGGTTTACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp GCACAGACCCAGAACGGGTCCTCTGAAGCCCAAAGTTaGACTTCTCTGAAACACAGGCATTCTAGGGGACAG +
Preference number: 3 (lower is better)
Translates to: AQTQNGSSEAQS*TSLKHRHSRGQ
Trigger: CTGTCCCCTAGAATGCCTGTGTTTCAGAGAAGTTCAACTTTGGGCTTCAGAGGACCCGTTCTGGGTCTGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp CTAAAACCAAGGGGGACACCATCCCAGGAGTGTATCTaGCTCTCCCACAATTGCAGAGTCGAACTGGGTAGA +
Preference number: 3 (lower is better)
Translates to: LKPRGTPSQECI*LSHNCRVELGR
Trigger: TCTACCCAGTTCGACTCTGCAATTGTGGGAGAGGCAGATACACTCCTGGGATGGTGTCCCCCTTGGTTTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp CATTCCTCAGAAAGAGGTGGTAGCTTGACCTGCTCTTaGCCACATTTGAAGCGACAAGGGGTGGGAGCTGTT +
Preference number: 3 (lower is better)
Translates to: HSSERGGSLTCS*PHLKRQGVGAV
Trigger: AACAGCTCCCACCCCTTGTCGCTTCAAATGTGGGCAAGAGCAGGTCAAGCTACCACCTCTTTCTGAGGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp ATGCATTGTAGTGTTGGGTACAGCTGGTGGAAAACGTaGTTGTCGACAGCAGGCTTCAAGAGGACCAGGCTC +
Preference number: 3 (lower is better)
Translates to: MHCSVGYSWWKT*LSTAGFKRTRL
Trigger: GAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCCAACACTACAATGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp GCTACAGAGCAAGCCAAGAAGCCTGCTTTCCCTTCATaGGGTGAAGATTCAGGTGACAAGGTGCCTAGAGGA +
Preference number: 3 (lower is better)
Translates to: ATEQAKKPAFPS*GEDSGDKVPRG
Trigger: TCCTCTAGGCACCTTGTCACCTGAATCTTCACCCCATGAAGGGAAAGCAGGCTTCTTGGCTTGCTCTGTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCTGTAAACACGTTTTGGGGGAAAGCTGAGGGAGGGCCACCATACTATTCCCATTCATGGGCTGACTCCTaGACATCTTGCCTGACAGCA +
Preference number: 3 (lower is better)
Translates to: PVNTFWGKAEGGPPYYSHSWADS*TSCLTA
Trigger: TGCTGTCAGGCAAGATGTCAAGGAGTCAGCCCATGA...ATGGGAATAGTATGGTGGCCCTCCCTCAGCTTTCCCCCAAAACGTGTTTACAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGTCCTGCACAGCCATGTaGTGGCCTGTGGCCTGTGGC +
Preference number: 3 (lower is better)
Translates to: YTISAFKRMPDPVRESQRSCTAM*WPVACG
Trigger: GCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCACAGTGCCACCATTTaGAAGTTTCTTCTGTGTGAG +
Preference number: 3 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRHSATI*KFLLCE
Trigger: CTCACACAGAAGAAACTTCAAAATGGTGGCACTGTG...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGACCTGCAGGCACAGGTaGTCTCCTTGTTTTTCACTT +
Preference number: 3 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKTCRHR*SPCFSL
Trigger: AAGTGAAAAACAAGGAGACAACCTGTGCCTGCAGGT...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGAAAAGTGTGCAGGGGTaGCCAGAGGAGCACAAGCAG +
Preference number: 3 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGKSVQG*PEEHKQ
Trigger: CTGCTTGTGCTCCTCTGGCAACCCCTGCACACTTTT...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCAAAAGTGTGCAGGGGTaGCCAGAGGAGCACAAGCAG +
Preference number: 3 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSKSVQG*PEEHKQ
Trigger: CTGCTTGTGCTCCTCTGGCAACCCCTGCACACTTTT...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCTGGCCGAGGTGTGTGGGACATATTTCCCACAAGCCCTGTGCCTTCATACTCTAAGAACAATTTCACCTaGTCCTTGGGAAAAGGAGGG +
Preference number: 3 (lower is better)
Translates to: PGRGVWDIFPTSPVPSYSKNNFT*SLGKGG
Trigger: CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTT...AGAGTATGAAGGCACAGGGCTTGTGGGAAATATGTCCCACACACCTCGGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCTGGCCGAGGTGTGTGGGACATATTTCCCACAAGCCCTGTGCCTTCATACTCTATTTCCCAGGTAGCTTaGTGGTTTCTCCATTTTGGC +
Preference number: 3 (lower is better)
Translates to: PGRGVWDIFPTSPVPSYSISQVA*WFLHFG
Trigger: GCCAAAATGGAGAAACCACAAAGCTACCTGGGAAAT...AGAGTATGAAGGCACAGGGCTTGTGGGAAATATGTCCCACACACCTCGGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp CAGGGGTTGCCAGAGGAGCACAAGCAGATAAGGATGTaGCAGGGGCCAAGTCTTGAAGTCTCAAGAATGGAA +
Preference number: 3 (lower is better)
Translates to: QGLPEEHKQIRM*QGPSLEVSRME
Trigger: TTCCATTCTTGAGACTTCAAGACTTGGCCCCTGTCACATCCTTATCTGCTTGTGCTCCTCTGGCAACCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp AGACCCCAAGTAGAGCAGCCTTGGCTATTCCTAATGTaGCCTTGGTATCCAGGACAGAAGTCAAGGTCAGGG +
Preference number: 3 (lower is better)
Translates to: RPQVEQPWLFLM*PWYPGQKSRSG
Trigger: CCCTGACCTTGACTTCTGTCCTGGATACCAAGGTCACATTAGGAATAGCCAAGGCTGCTCTACTTGGGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp CTGATGGAGTCACAAGAAATGGAGAGACTTCACTGTTaGGACAGAGGCCAAAAAGTGTGCAGGGGTTGCCAG +
Preference number: 3 (lower is better)
Translates to: LMESQEMERLHC*DRGQKVCRGCQ
Trigger: CTGGCAACCCCTGCACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCATCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp TGCCTTGTGTTCTTCCCTCAACCTGTAAACACGTTTTaGGGGAAAGCTGAGGGAGGGCCACCATACTATTCC +
Preference number: 3 (lower is better)
Translates to: CLVFFPQPVNTF*GKAEGGPPYYS
Trigger: GGAATAGTATGGTGGCCCTCCCTCAGCTTTCCCCCAAAACGTGTTTACAGGTTGAGGGAAGAACACAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTACCTGCAGGCACAGGTaGTCTCCTTGTTTTTCACTT +
Preference number: 3 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSTCRHR*SPCFSL
Trigger: AAGTGAAAAACAAGGAGACAACCTGTGCCTGCAGGT...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGACAGGGGCCAAGTCTaGAAGTCTCAAGAATGGAAT +
Preference number: 3 (lower is better)
Translates to: PLPASSTRASVSTSSPEADRGQV*KSQEWN
Trigger: ATTCCATTCTTGAGACTTCAAGACTTGGCCCCTGTC...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTTCATGGGCTGACTCCTaGACATCTTGCCTGACAGCA +
Preference number: 3 (lower is better)
Translates to: SPSEEQFHLVLGKRRGAGSWADS*TSCLTA
Trigger: TGCTGTCAGGCAAGATGTCAAGGAGTCAGCCCATGA...ACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGATTCCTAATGTGACCTaGGTATCCAGGACAGAAGTC +
Preference number: 3 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLIPNVT*VSRTEV
Trigger: GACTTCTGTCCTGGATACCAAGGTCACATTAGGAAT...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGATTCCTAATGTGACCTaGGTATCCAGGACAGAAGTC +
Preference number: 3 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPIPNVT*VSRTEV
Trigger: GACTTCTGTCCTGGATACCAAGGTCACATTAGGAAT...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp CCATGCTGGCTGACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCCACAGTGCCACCATTTaGAAGTTTCTTCTGTGTGAG +
Preference number: 3 (lower is better)
Translates to: PCWLTTSSLFYKSQCVNIHSATI*KFLLCE
Trigger: CTCACACAGAAGAAACTTCAAAATGGTGGCACTGTG...GATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGTCAGCCAGCATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCTGCTCTTGCCCACATTaGAAGCGACAAGGGGTGGGA +
Preference number: 3 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSCSCPH*KRQGVG
Trigger: TCCCACCCCTTGTCGCTTCAAATGTGGGCAAGAGCA...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp AGAACGGGTCCTCTGAAGCCCAAAGTTGAACTTCTCTaGAACACAGGCATTCTAGGGGACAGTTCCTGTGTC +
Preference number: 3 (lower is better)
Translates to: RTGPLKPKVELL*NTGILGDSSCV
Trigger: GACACAGGAACTGTCCCCTAGAATGCCTGTGTTTCAGAGAAGTTCAACTTTGGGCTTCAGAGGACCCGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp TCCTCTTACACTTGCACAGACCCAGAACGGGTCCTCTaGAGCCCAAAGTTGAACTTCTCTGAAACACAGGCA +
Preference number: 3 (lower is better)
Translates to: SSYTCTDPERVL*SPKLNFSETQA
Trigger: TGCCTGTGTTTCAGAGAAGTTCAACTTTGGGCTTCAGAGGACCCGTTCTGGGTCTGTGCAAGTGTAAGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp CCAGAAGAGGGCATCAGATTCCATTACAGATGGTTGTaGGCCACCATGTGGTTGCTAGGAACTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: PEEGIRFHYRWL*ATMWLLGTELR
Trigger: CCTGAGTTCAGTTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCCTCTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR GCA 72 bp CTGGTGGCAGCGTCATGGGCTGACTCCTTGACATCTTaGCTGACAGCATTTCGTTTCTTCCTCCTTATTCAT +
Preference number: 3 (lower is better)
Translates to: LVAASWADSLTS*LTAFRFFLLIH
Trigger: ATGAATAAGGAGGAAGAAACGAAATGCTGTCAGGCAAGATGTCAAGGAGTCAGCCCATGACGCTGCCACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp GCCCTGTGCCTTCATACTCTTCCACAGCAATGTAACTaGCACTTTCCTCTTACACTTGCACAGACCCAGAAC +
Preference number: 3 (lower is better)
Translates to: ALCLHTLPQQCN*HFPLTLAQTQN
Trigger: GTTCTGGGTCTGTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGCACAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp GAACTTCCAAATGGATCAGAAATTCAGGGGACATCCTaGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAG +
Preference number: 3 (lower is better)
Translates to: ELPNGSEIQGTS*APLFHVVFSGQ
Trigger: CTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCCAGGATGTCCCCTGAATTTCTGATCCATTTGGAAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TGGAGTCACAAGAAATGGAGAGACTTCACTGTTGCGACAGAGGCCAAAAAGTGTGCACAGGTTGTCTCCTaGTTTTTCACTTGCTGGCCC +
Preference number: 3 (lower is better)
Translates to: WSHKKWRDFTVATEAKKCAQVVS*FFTCWP
Trigger: GGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC...ACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGGTGAGACAGAGACCCTaGAGGAGCCAGGGTAGGATG +
Preference number: 3 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERVRQRP*RSQGRM
Trigger: CATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp GCAGAGGTTGGAACAGTAACCCAGAGGATTAGGTGCTaGTGGAGTCACAAGAAATGGAGAGACTTCACTGTT +
Preference number: 3 (lower is better)
Translates to: AEVGTVTQRIRC*WSHKKWRDFTV
Trigger: AACAGTGAAGTCTCTCCATTTCTTGTGACTCCATCAGCACCTAATCCTCTGGGTTACTGTTCCAACCTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp TGGCCGATATTCATATTCTCCACAGTGCCACCATTTTaGAGTTTCTTCTGTGTGAGTGGGGACAGGAATGGG +
Preference number: 3 (lower is better)
Translates to: WPIFIFSTVPPF*SFFCVSGDRNG
Trigger: CCCATTCCTGTCCCCACTCACACAGAAGAAACTTCAAAATGGTGGCACTGTGGAGAATATGAATATCGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTaGGCAGATTCATCAGGCAAGATTTCAAAACAAGAA +
Preference number: 3 (lower is better)
Translates to: YPGQKSRSGPSD*ADSSGKISKQE
Trigger: TTCTTGTTTTGAAATCTTGCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp GATGGCTTATTCAGATTTCACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTTAATTTCACCTTGTCCTaGGGAAAAGGAGGGGTGCTG +
Preference number: 3 (lower is better)
Translates to: DGLFRFHRNTCRDFPGSFNFTLS*GKGGVL
Trigger: CAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATT...AAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGTGAAATCTGAATAAGCCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR-3UTR CAA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAAGAACAATTTCACCTaGTCCTTGGGAAAAGGAGGG +
Preference number: 3 (lower is better)
Translates to: YTISAFKRMPDPVRESQRKNNFT*SLGKGG
Trigger: CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTT...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp TTGAAGTCTCAAGAATGGAATTCTAAAGGACCTGTATaGTCCCACCTGCAGGCACAGGTTGTCTCCTTGTTT +
Preference number: 3 (lower is better)
Translates to: LKSQEWNSKGPV*SHLQAQVVSLF
Trigger: AAACAAGGAGACAACCTGTGCCTGCAGGTGGGATCATACAGGTCCTTTAGAATTCCATTCTTGAGACTTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR TCA 72 bp GCACAAGCAGATAAGGATGTGACAGGGGCCAAGTCTTaGAGTCTCAAGAATGGAATTCTAAAGGACCTGTAT +
Preference number: 3 (lower is better)
Translates to: AQADKDVTGAKS*SLKNGILKDLY
Trigger: ATACAGGTCCTTTAGAATTCCATTCTTGAGACTTCAAGACTTGGCCCCTGTCACATCCTTATCTGCTTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp AAGAATGGAATTCTAAAGGACCTGTATGATCCCACCTaGAGGCACAGGTTGTCTCCTTGTTTTTCACTTGCT +
Preference number: 3 (lower is better)
Translates to: KNGILKDLYDPT*RHRLSPCFSLA
Trigger: AGCAAGTGAAAAACAAGGAGACAACCTGTGCCTGCAGGTGGGATCATACAGGTCCTTTAGAATTCCATTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp GAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTaGCTTCACTTATTGAGCCATCTCACCCACGCAATT +
Preference number: 3 (lower is better)
Translates to: EDQTLVVRLSSK*LHLLSHLTHAI
Trigger: AATTGCGTGGGTGAGATGGCTCAATAAGTGAAGGCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR CCA 72 bp AGAGATTTCCCAGGTAGCTTTGTGGTTTCTCCATTTTaGCCGATATTCATATTCTCCACAGTGCCACCATTT +
Preference number: 3 (lower is better)
Translates to: RDFPGSFVVSPF*PIFIFSTVPPF
Trigger: AAATGGTGGCACTGTGGAGAATATGAATATCGGCCAAAATGGAGAAACCACAAAGCTACCTGGGAAATCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CCA 72 bp ACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTTGTaGTTTCTCCATTTTGGCCGATATTCATATTCTCCA +
Preference number: 3 (lower is better)
Translates to: TETLAEISQVAL*FLHFGRYSYSP
Trigger: TGGAGAATATGAATATCGGCCAAAATGGAGAAACCACAAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR GCA 72 bp TGTAAACTAGGAAATAGTTATATAGTCAGTGTCTCCTaGCTGCCCTTACACAATCTCAGCTTTCAAGAGAAT +
Preference number: 3 (lower is better)
Translates to: CKLGNSYIVSVS*LPLHNLSFQEN
Trigger: ATTCTCTTGAAAGCTGAGATTGTGTAAGGGCAGGCAGGAGACACTGACTATATAACTATTTCCTAGTTTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGGGCCCTGGTTCTGGCTaGAGGTGGTGGCAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQGPGSG*RWWQKH
Trigger: ATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCC...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGCCATGCAGTGAGACCTaGTCGCCCTTCACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQPCSET*SPFTRE
Trigger: CTCCCTGGTGAAGGGCGAGCAGGTCTCACTGCATGG...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TCCTGCACAGCCATGTTGTGGCCTGTGGCCTGTGGCGTGTGGTGTGAGTGGAGGGGCAAGATGTTCCCCTaGGAAGGTGGGCTGCTAGGA +
Preference number: 4 (lower is better)
Translates to: SCTAMLWPVACGVWCEWRGKMFP*EGGLLG
Trigger: TCCTAGCAGCCCACCTTCTCAGGGGAACATCTTGCC...CCTCCACTCACACCACACGCCACAGGCCACAGGCCACAACATGGCTGTGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp GTTGGCAGGCCTCAAACCTGCTTCAGACCTGAGCACAGCACCCTGACAGGTGCACAAGCTGGCGGCAGTTaGCTGGGACTCCTGTGGCAG +
Preference number: 4 (lower is better)
Translates to: VGRPQTCFRPEHSTLTGAQAGGS*LGLLWQ
Trigger: CTGCCACAGGAGTCCCAGTCAACTGCCGCCAGCTTG...TGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp GTTGGCAGGCCTCAAACCTGCTTCAGACCTGAGCACAGCACCCTGACAGGTGCACTCCGGGCCTCCTCTTaGATCTGCATCCGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: VGRPQTCFRPEHSTLTGALRASS*ICIRSC
Trigger: GCAGGAGCGGATGCAGATGCAAGAGGAGGCCCGGAG...TGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGGGGCATGGAGAGGCTTaGCCTGAGTTAGGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQGHGEA*PELGQS
Trigger: TGACTGCCCTAACTCAGGCCAAGCCTCTCCATGCCC...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp GGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAGGCAGCACGGTGAGGCAGGGTCAGGATGGAGGTGGTaGTACTCAGCTGACGGAGGG +
Preference number: 4 (lower is better)
Translates to: GLPSFMWSSQDRQHGEAGSGWRW*YSADGG
Trigger: CCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGA...CCCTGCCTCACCGTGCTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGACTTGCCCTCTGTGGTaGTGGCCTCTGGCCGACGGT +
Preference number: 4 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRTCPLW*WPLADG
Trigger: ACCGTCGGCCAGAGGCCATCACCACAGAGGGCAAGT...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp GGTGTGTCAGGAAGGGTACGAGGGGGATCTCCAGGCATCTCATGCAGTCACATGTGGGGACTACCCCCATaGAGTGAGACCTGCTCGCCC +
Preference number: 4 (lower is better)
Translates to: GVSGRVRGGSPGISCSHMWGLPP*SETCSP
Trigger: GGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCA...CATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTACCCTTCCTGACACACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGAGCCATCTAGTGGGGTaGCAAAGTGGCACACAGGAT +
Preference number: 4 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQSHLVG*QSGTQD
Trigger: ATCCTGTGTGCCACTTTGTCACCCCACTAGATGGCT...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGGGCGGGTGCTCGCGGTaGGGAGAGGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLGGCSR*GEDTMK
Trigger: CTTCATGGTGTCCTCTCCGCACCGCGAGCACCCGCC...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGAGACGGGGCTAGGCTaGCTGCTCGTGCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKETGLG*LLVLWL
Trigger: CAGCCACAGCACGAGCAGCCAGCCTAGCCCCGTCTC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp CCATGCTGGCTGACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCCCCGTGGCAGGGACCTaGGGACTACCCCCATGCAGT +
Preference number: 4 (lower is better)
Translates to: PCWLTTSSLFYKSQCVNIPVAGT*GLPPCS
Trigger: ACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGG...GATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGTCAGCCAGCATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCTCGTCCTCGGGCACCTaGGGCTTGAGCAGCACCGAA +
Preference number: 4 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGSSSGT*GLSSTE
Trigger: TTCGGTGCTGCTCAAGCCTCAGGTGCCCGAGGACGA...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp CCTGTAAACACGTTTTGGGGGAAAGCTGAGGGAGGGCCACCATACTATTCCCATAGTGGCCGCTGTGGATaGTCTGCTGTCGGCGCGGAG +
Preference number: 4 (lower is better)
Translates to: PVNTFWGKAEGGPPYYSHSGRCG*SAVGAE
Trigger: CTCCGCGCCGACAGCAGATCATCCACAGCGGCCACT...ATGGGAATAGTATGGTGGCCCTCCCTCAGCTTTCCCCCAAAACGTGTTTACAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGTGGCTGGGGTACGGGTaGCAGTGCCAAAGCACAGGG +
Preference number: 4 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKWLGYG*QCQSTG
Trigger: CCCTGTGCTTTGGCACTGTCACCCGTACCCCAGCCA...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp TCAGGATGGAGGTGGTGGTACTCAGCTGACGGAGGGTACTCAGTACCATTGGCCTGGAGAGGCTTGGCCTaGGTTAGGGCAGTCACGACT +
Preference number: 4 (lower is better)
Translates to: SGWRWWYSADGGYSVPLAWRGLA*VRAVTT
Trigger: AGTCGTGACTGCCCTAACTCAGGCCAAGCCTCTCCA...GGCCAATGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp ACACGGAGGAGGAGGGCTAAGGGGCGTACAGATACAGGAGGGCTCAGGCAAGCCGTCTGTAGATTTCCCTaGGCAGTTGTTCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: TRRRRAKGRTDTGGLRQAVCRFP*AVVLGR
Trigger: TCTCCCCAGAACAACTGCTCAGGGAAATCTACAGAC...GGCTTGCCTGAGCCCTCCTGTATCTGTACGCCCCTTAGCCCTCCTCCTCCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp CTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTGCCGCTGTGGATGATCTaGTGTCGGCGCGGAGGCTCC +
Preference number: 4 (lower is better)
Translates to: LKNNFTLSLGKGGVLVGVPLWMI*CRRGGS
Trigger: GGAGCCTCCGCGCCGACAGCAGATCATCCACAGCGG...CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CCTGGCCGAGGTGTGTGGGACATATTTCCCACAAGCCCTGTGCCTTCATACTCTGGCCAGGCCACGGGTTaGTGTGAAGAGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: PGRGVWDIFPTSPVPSYSGQATG*CEESVE
Trigger: CTCCACACTCTCTTCACACCAACCCGTGGCCTGGCC...AGAGTATGAAGGCACAGGGCTTGTGGGAAATATGTCCCACACACCTCGGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGGAGGAGAAGAGATCCTaGAAAGGCTCAAAGGTGTCC +
Preference number: 4 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQEEKRS*KGSKVS
Trigger: GGACACCTTTGAGCCTTTCCAGGATCTCTTCTCCTC...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGCAAAGCACAGGGGGATaGGGAGGGGGTTGGATGGTG +
Preference number: 4 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLQSTGG*GGGWMV
Trigger: CACCATCCAACCCCCTCCTCATCCCCCTGTGCTTTG...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp GTTGGCAGGCCTCAAACCTGCTTCAGACCTGAGCACAGCACCCTGACAGGTGCAAGTGGGGTGACAAAGTaGCACACAGGATTCTTGCGC +
Preference number: 4 (lower is better)
Translates to: VGRPQTCFRPEHSTLTGASGVTK*HTGFLR
Trigger: GCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACT...TGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CTCAGGACCTCTGGAGAGCAGCCAGTGCTCTTAGCTGCTGAGCCATCTCTGCAGCAAAGGGATCAGGCCTaGCTGGATCATGTCTGCGTT +
Preference number: 4 (lower is better)
Translates to: LRTSGEQPVLLAAEPSLQQRDQA*LDHVCV
Trigger: AACGCAGACATGATCCAGCCAGGCCTGATCCCTTTG...CTGCAGAGATGGCTCAGCAGCTAAGAGCACTGGCTGCTCTCCAGAGGTCCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTGAGTTGGAACAGGTGCTaGGGCGGGGCCAGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: LKNNFTLSLGKGGVLVGVSWNRC*GGARGK
Trigger: CTTTCCCCTGGCCCCGCCCCAGCACCTGTTCCAACT...CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
3UTR CAA 72 bp CCACCTGCAGGCACAGGTTGTCTCCTTGTTTTTCACTaGCTGGCCCTGGACCCCAATACAACTCCAGGCGGA +
Preference number: 4 (lower is better)
Translates to: PPAGTGCLLVFH*LALDPNTTPGG
Trigger: TCCGCCTGGAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGCCTGCAGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp CCATGCTGGCTGACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCTGGAGAGGCTTGGCCTaGGTTAGGGCAGTCACGACT +
Preference number: 4 (lower is better)
Translates to: PCWLTTSSLFYKSQCVNIWRGLA*VRAVTT
Trigger: AGTCGTGACTGCCCTAACTCAGGCCAAGCCTCTCCA...GATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGTCAGCCAGCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp GTTGGCAGGCCTCAAACCTGCTTCAGACCTGAGCACAGCACCCTGACAGGTGCATTGTTCTGGGGAGACTaGGGACTGGGACTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: VGRPQTCFRPEHSTLTGALFWGD*GLGLCS
Trigger: AGAACAAAGTCCCAGTCCTCAGTCTCCCCAGAACAA...TGCACCTGTCAGGGTGCTGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACCCCTTCTTGGGCGGGTaGTCGCGGTGCGGAGAGGAC +
Preference number: 4 (lower is better)
Translates to: AFILFHSNVTATFLLHLHPFLGG*SRCGED
Trigger: GTCCTCTCCGCACCGCGAGCACCCGCCCAAGAAGGG...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp TCCCGAAGCTGCCGCGCTTCCCCTGTGCTGTGTAAACCACTGGAGCACTCCCAGATACTGCATATACCATaGCCTCCAGATGGCGTTGTT +
Preference number: 4 (lower is better)
Translates to: SRSCRASPVLCKPLEHSQILHIP*PPDGVV
Trigger: AACAACGCCATCTGGAGGGCATGGTATATGCAGTAT...CTGGGAGTGCTCCAGTGGTTTACACAGCACAGGGGAAGCGCGGCAGCTTCGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp CTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGCTCAGGCGAGAGGGACCAAAGTCTaGAGGCTGAATAAACGGGTC +
Preference number: 4 (lower is better)
Translates to: LVENVLVDSRLQEDQAQARGTKV*RLNKRV
Trigger: GACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCT...CGCCTGAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp GGTGTGTCAGGAAGGGTACGAGGGGGATCTCCAGGCATCTCATGCAGTCACATGACAAGTGGCAGGAGCTaGTCTTGCCGAAGCTATAGG +
Preference number: 4 (lower is better)
Translates to: GVSGRVRGGSPGISCSHMTSGRS*SCRSYR
Trigger: CCTATAGCTTCGGCAAGACCAGCTCCTGCCACTTGT...CATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTACCCTTCCTGACACACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTTCCCCTGAGAAGGTaGGCTGCTAGGATCTGCGGC +
Preference number: 4 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLAVPLRR*AARICG
Trigger: GCCGCAGATCCTAGCAGCCCACCTTCTCAGGGGAAC...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTGCAGTTGGAACAGGTGCTaGGGCGGGGCCAGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: HHVDPEDQTLVVRLSSKCSWNRC*GGARGK
Trigger: CTTTCCCCTGGCCCCGCCCCAGCACCTGTTCCAACT...GCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGGTGGCAGAAGCATCATaGGTAAGGGTTGCAGAGGCT +
Preference number: 4 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRVAEAS*VRVAEA
Trigger: AGCCTCTGCAACCCTTACCCATGATGCTTCTGCCAC...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCCCCGTGGCAGGGACCTaGGGACTACCCCCATGCAGT +
Preference number: 4 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSPVAGT*GLPPCS
Trigger: ACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGG...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp CTGACCCTGAGGCCAGGCGATCCAGCAGCCACAGTATCCAACACACCCAAGAGAAGTGTCGCTGAATTCTaGCATGAGCATGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: LTLRPGDPAATVSNTPKRSVAEF*HEHVCV
Trigger: GACACAGACATGCTCATGTCAGAATTCAGCGACACT...TCTCTTGGGTGTGTTGGATACTGTGGCTGCTGGATCGCCTGGCCTCAGGGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp CGGCCTGGGACTTACTCTGTAACTCAGACTGTCCTCAAGTTCAAATTCTTCCTGTGGCTGGGGTACGGGTaGCAGTGCCAAAGCACAGGG +
Preference number: 4 (lower is better)
Translates to: RPGTYSVTQTVLKFKFFLWLGYG*QCQSTG
Trigger: CCCTGTGCTTTGGCACTGTCACCCGTACCCCAGCCA...CAGGAAGAATTTGAACTTGAGGACAGTCTGAGTTACAGAGTAAGTCCCAGGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTTGGGGACTACCCCCATaGAGTGAGACCTGCTCGCCC +
Preference number: 4 (lower is better)
Translates to: SPSEEQFHLVLGKRRGAGWGLPP*SETCSP
Trigger: GGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCA...ACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCCTATTTCTCGTGGGTTaGGCCAGGCCACGGGTTGGT +
Preference number: 4 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLLFLVG*ARPRVG
Trigger: ACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAG...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTACTATTTCTCGTGGGTTaGGCCAGGCCACGGGTTGGT +
Preference number: 4 (lower is better)
Translates to: PPTTWIPRIKLWLLDLAVLFLVG*ARPRVG
Trigger: ACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAG...TACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCAACCCTGGCCCTCTGTaGGATCCAGGGAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSNPGPL*DPGRGL
Trigger: CAGCCCCCTCCCTGGATCCCACAGAGGGCCAGGGTT...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp GGTGTGTCAGGAAGGGTACGAGGGGGATCTCCAGGCATCTCATGCAGTCACATGGGTACTCAGTACCATTaGCCTGAGGACAGGAAGAGA +
Preference number: 4 (lower is better)
Translates to: GVSGRVRGGSPGISCSHMGTQYH*PEDRKR
Trigger: TCTCTTCCTGTCCTCAGGCCAATGGTACTGAGTACC...CATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTACCCTTCCTGACACACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
3UTR CAA 72 bp GGTCACAGCAAAGGTTCCCAAGATGGGATACTGCTGTaGGCAGGCCTCAAACCTGCTTCAGACCTGAGCACA +
Preference number: 4 (lower is better)
Translates to: GHSKGSQDGILL*AGLKPASDLST
Trigger: TGTGCTCAGGTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGGGAACCTTTGCTGTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp CTAAAGGACCTGTATGATCCCACCTGCAGGCACAGGTaGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCC +
Preference number: 4 (lower is better)
Translates to: LKDLYDPTCRHR*SPCFSLAGPGP
Trigger: GGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGCCTGCAGGTGGGATCATACAGGTCCTTTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp CATTGTAGTGTTGGGTACAGCTGGTGGAAAACGTGCTaGTCGACAGCAGGCTTCAAGAGGACCAGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: HCSVGYSWWKTC*STAGFKRTRLR
Trigger: CCTGAGCCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCCAACACTACAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp ACACAAGGGAGGCAGTACATTCCTTTCTGCAGAGGTTGGAACAGTAACCCAGAGGGCCACGGGTTGGTGTaGAGAGAGTGTGGAGAAGAG +
Preference number: 4 (lower is better)
Translates to: TQGRQYIPFCRGWNSNPEGHGLV*RECGEE
Trigger: CTCTTCTCCACACTCTCTTCACACCAACCCGTGGCC...CTCTGGGTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTGCCTCCCTTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp CGGCCTGGGACTTACTCTGTAACTCAGACTGTCCTCAAGTTCAAATTCTTCCTGCAAAGCACAGGGGGATaGGGAGGGGGTTGGATGGTG +
Preference number: 4 (lower is better)
Translates to: RPGTYSVTQTVLKFKFFLQSTGG*GGGWMV
Trigger: CACCATCCAACCCCCTCCTCATCCCCCTGTGCTTTG...CAGGAAGAATTTGAACTTGAGGACAGTCTGAGTTACAGAGTAAGTCCCAGGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp ACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCGAGGAGCTGATGTCATaGTCACCTTCTGCGGTTGGC +
Preference number: 4 (lower is better)
Translates to: TTSSLFYKSQCVNIKSRSEELMS*SPSAVG
Trigger: GCCAACCGCAGAAGGTGATCATGACATCAGCTCCTC...GCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTGAGGAGCTGATGTCATaGTCACCTTCTGCGGTTGGC +
Preference number: 4 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSEELMS*SPSAVG
Trigger: GCCAACCGCAGAAGGTGATCATGACATCAGCTCCTC...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGTCTCTTCAGAGGAGCTaGTGTCATGATCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRSLQRS*CHDHLL
Trigger: CAGAAGGTGATCATGACATCAGCTCCTCTGAAGAGA...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGTGGCAGCAGAAGCAATaGCCACATTGGATGGGGACA +
Preference number: 4 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLWQQKQ*PHWMGT
Trigger: TGTCCCCATCCAATGTGGTCATTGCTTCTGCTGCCA...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TGTTGCGACAGAGGCCAAAAAGTGTGCAGGGGTTGCCAGAGGAGCACAAGCAGATTGTTCTGGGGAGACTaGGGACTGGGACTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: CCDRGQKVCRGCQRSTSRLFWGD*GLGLCS
Trigger: AGAACAAAGTCCCAGTCCTCAGTCTCCCCAGAACAA...TCTGCTTGTGCTCCTCTGGCAACCCCTGCACACTTTTTGGCCTCTGTCGCAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp CTCAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGCCGCTGTGGATGATCTaGTGTCGGCGCGGAGGCTCC +
Preference number: 4 (lower is better)
Translates to: LRLSSSSNSSCCNLSSIVPLWMI*CRRGGS
Trigger: GGAGCCTCCGCGCCGACAGCAGATCATCCACAGCGG...CACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp CCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAAGTCCAGGTTGGGTTaGAAAGGGATCAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: PPTTWIPRIKLWLLDLAVKSRLG*KGIRPG
Trigger: GCCAGGCCTGATCCCTTTGCAACCCAACCTGGACTT...TACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGTGCATCCGCTCCTGCTaGAGTTTGGTGATGTACTCC +
Preference number: 4 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKCIRSC*SLVMYS
Trigger: GGAGTACATCACCAAACTGCAGCAGGAGCGGATGCA...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp GGGCATCAGATTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTAGGAACATGAAGTGGCCGCTGTaGATGATCTGCTGTCGGCGC +
Preference number: 4 (lower is better)
Translates to: GHQIPLQMVVSHHVVARNMKWPL*MICCRR
Trigger: GCGCCGACAGCAGATCATCCACAGCGGCCACTTCAT...GTTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTGTGTGGTGATGGCCTCTaGCCGACGGTGTTCATCTAC +
Preference number: 4 (lower is better)
Translates to: LKNNFTLSLGKGGVLVGVCGDGL*PTVFIY
Trigger: GTAGATGAACACCGTCGGCCAGAGGCCATCACCACA...CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CCATGCTGGCTGACCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCCAAAGGGATCAGGCCTaGCTGGATCATGTCTGCGTT +
Preference number: 4 (lower is better)
Translates to: PCWLTTSSLFYKSQCVNIQRDQA*LDHVCV
Trigger: AACGCAGACATGATCCAGCCAGGCCTGATCCCTTTG...GATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGGTCAGCCAGCATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCCTGTGGGACACTCAGTaGTGGCTCAGAGGGACCAAA +
Preference number: 4 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLLWDTQ*WLRGTK
Trigger: TTTGGTCCCTCTGAGCCACCACTGAGTGTCCCACAG...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTACAAGGCCCTGGTTCTaGCTGAAGGTGGTGGCAGAA +
Preference number: 4 (lower is better)
Translates to: PLPASSTRASVSTSSPEATRPWF*LKVVAE
Trigger: TTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGT...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AAAGGTTCCCAAGATGGGATACTGCTGTTGGCAGGCCTCAAACCTGCTTCAGACGGGGAGACTGAGGACTaGGACTTTGTTCTGATGGGC +
Preference number: 4 (lower is better)
Translates to: KGSQDGILLLAGLKPASDGETED*DFVLMG
Trigger: GCCCATCAGAACAAAGTCCCAGTCCTCAGTCTCCCC...GTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGGGAACCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp GGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAGGCAGCACGGTGAGGCAGGGTCTGCTTGGAATTATTaGAGATCAAGCTATTCAGGG +
Preference number: 4 (lower is better)
Translates to: GLPSFMWSSQDRQHGEAGSAWNY*RSSYSG
Trigger: CCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGA...CCCTGCCTCACCGTGCTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp CACAGTGGCCTTCACCTTCTGAAGAACAATTTCACCTaGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTG +
Preference number: 4 (lower is better)
Translates to: HSGLHLLKNNFT*SLGKGGVLVGV
Trigger: CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp CCAAGTAGAGCAGCCTTGGCTATTCCTAATGTGACCTaGGTATCCAGGACAGAAGTCAAGGTCAGGGCCCTC +
Preference number: 4 (lower is better)
Translates to: PSRAALAIPNVT*VSRTEVKVRAL
Trigger: GAGGGCCCTGACCTTGACTTCTGTCCTGGATACCAAGGTCACATTAGGAATAGCCAAGGCTGCTCTACTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp AAACAAACCCCAGTCAAACAGTGTGGTCAGCGCCCATaGGAGACCCCAAGTAGAGCAGCCTTGGCTATTCCT +
Preference number: 4 (lower is better)
Translates to: KQTPVKQCGQRP*ETPSRAALAIP
Trigger: AGGAATAGCCAAGGCTGCTCTACTTGGGGTCTCCAATGGGCGCTGACCACACTGTTTGACTGGGGTTTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TTATTTAATACATGTGAGCACACTGTAGCTGACTTCAGACACACCAGAAGAGGGAGTGGCCGCTGTGGATaGTCTGCTGTCGGCGCGGAG +
Preference number: 4 (lower is better)
Translates to: LFNTCEHTVADFRHTRRGSGRCG*SAVGAE
Trigger: CTCCGCGCCGACAGCAGATCATCCACAGCGGCCACT...CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTGCTCACATGTATTAAATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp GGGCATCAGATTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTAGGAACACTCGAAGAGCTTGGTaGGCGACGCATCGATGGACA +
Preference number: 4 (lower is better)
Translates to: GHQIPLQMVVSHHVVARNTRRAW*ATHRWT
Trigger: TGTCCATCGATGCGTCGCTCACCAAGCTCTTCGAGT...GTTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCGCTCAAAGGTGTCCATaGAGTCCAGGTTGGGTTGCA +
Preference number: 4 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLAQRCP*SPGWVA
Trigger: TGCAACCCAACCTGGACTTCATGGACACCTTTGAGC...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGCTTCTGCGGTTGGCCTaGGAAGGCAGCTGGAGCAAT +
Preference number: 4 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGLLRLA*EGSWSN
Trigger: ATTGCTCCAGCTGCCTTCTCAGGCCAACCGCAGAAG...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp TCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTCTTCTGCGGTTGGCCTaGGAAGGCAGCTGGAGCAAT +
Preference number: 4 (lower is better)
Translates to: SPSEEQFHLVLGKRRGAGLLRLA*EGSWSN
Trigger: ATTGCTCCAGCTGCCTTCTCAGGCCAACCGCAGAAG...ACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp CTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTGTGGCAGCAGAAGCAATaGCCACATTGGATGGGGACA +
Preference number: 4 (lower is better)
Translates to: LKNNFTLSLGKGGVLVGVWQQKQ*PHWMGT
Trigger: TGTCCCCATCCAATGTGGTCATTGCTTCTGCTGCCA...CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCACTACCCCCATGCAGTaGGACCTGCTCGCCCTTCAC +
Preference number: 4 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSTTPMQ*DLLALH
Trigger: GTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGT...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp AAGCTGAAACTTGAAGAACTTGAAGGAGAACATGCTGGGGTGCTACAGAGCAAGACTACCCCCATGCAGTaGGACCTGCTCGCCCTTCAC +
Preference number: 4 (lower is better)
Translates to: KLKLEELEGEHAGVLQSKTTPMQ*DLLALH
Trigger: GTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGT...CTTGCTCTGTAGCACCCCAGCATGTTCTCCTTCAAGTTCTTCAAGTTTCAGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGTCTGTAGATTTCCCTaGGCAGTTGTTCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKVCRFP*AVVLGR
Trigger: TCTCCCCAGAACAACTGCTCAGGGAAATCTACAGAC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGAGGTCCTCATCCTTGTaGTGCTGCAGCCTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLRSSSL*CCSLFL
Trigger: CAAGAAAAGGCTGCAGCAGCACAAGGATGAGGACCT...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp CTCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCGCAAACTTCTGTGGCTaGAGGAAAGCTGGTGGAGTT +
Preference number: 4 (lower is better)
Translates to: LTSHHVDPEDQTLVVRLSANFCG*RKAGGV
Trigger: AACTCCACCAGCTTTCCTGCAGCCACAGAAGTTTGC...GCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCAGGCAGCTGGAGCAATaGAGGCATTCTTCAACACCA +
Preference number: 4 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGRQLEQ*RHSSTP
Trigger: TGGTGTTGAAGAATGCCTGCATTGCTCCAGCTGCCT...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp GGGTACAGCTGGTGGAAAACGTGCTTGTCGACAGCAGGCTTCAAGAGGACCAGGTTCACCAGGGAGTCTTaGACTGTACTTGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: GYSWWKTCLSTAGFKRTRFTRES*TVLGEK
Trigger: CTTTTCTCCAAGTACAGTGCAAGACTCCCTGGTGAA...CCTGGTCCTCTTGAAGCCTGCTGTCGACAAGCACGTTTTCCACCAGCTGTACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp TCAGGATGGAGGTGGTGGTACTCAGCTGACGGAGGGTACTCAGTACCATTGGCCTTCACCAGGGAGTCTTaGACTGTACTTGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: SGWRWWYSADGGYSVPLAFTRES*TVLGEK
Trigger: CTTTTCTCCAAGTACAGTGCAAGACTCCCTGGTGAA...GGCCAATGGTACTGAGTACCCTCCGTCAGCTGAGTACCACCACCTCCATCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp GATGAAAATAACTGTAAACAAACCCCAGTCAAACAGTGTGGTCAGCGCCCATTGCTCCGGGCCTCCTCTTaGATCTGCATCCGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: DENNCKQTPVKQCGQRPLLRASS*ICIRSC
Trigger: GCAGGAGCGGATGCAGATGCAAGAGGAGGCCCGGAG...CAATGGGCGCTGACCACACTGTTTGACTGGGGTTTGTTTACAGTTATTTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp TCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTATGAAGTGGCCGCTGTaGATGATCTGCTGTCGGCGC +
Preference number: 4 (lower is better)
Translates to: SPSEEQFHLVLGKRRGAGMKWPL*MICCRR
Trigger: GCGCCGACAGCAGATCATCCACAGCGGCCACTTCAT...ACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AAGCTGAAACTTGAAGAACTTGAAGGAGAACATGCTGGGGTGCTACAGAGCAAGCTCCTCCATGGGGACTaGGGTTTTCCAGCCATCCCC +
Preference number: 4 (lower is better)
Translates to: KLKLEELEGEHAGVLQSKLLHGD*GFPAIP
Trigger: GGGGATGGCTGGAAAACCCCAGTCCCCATGGAGGAG...CTTGCTCTGTAGCACCCCAGCATGTTCTCCTTCAAGTTCTTCAAGTTTCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGAGTCCTCCTCCATaGGGACTGGGGTTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGVSPPP*GLGFSS
Trigger: GCTGGAAAACCCCAGTCCCCATGGAGGAGGACTCAC...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AAGCTGAAACTTGAAGAACTTGAAGGAGAACATGCTGGGGTGCTACAGAGCAAGGTTCCCCTGAGAAGGTaGGCTGCTAGGATCTGCGGC +
Preference number: 4 (lower is better)
Translates to: KLKLEELEGEHAGVLQSKVPLRR*AARICG
Trigger: GCCGCAGATCCTAGCAGCCCACCTTCTCAGGGGAAC...CTTGCTCTGTAGCACCCCAGCATGTTCTCCTTCAAGTTCTTCAAGTTTCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp GGCAGTACATTCCTTTCTGCAGAGGTTGGAACAGTAACCCAGAGGATTAGGTGCTGGGACACTCAGTGGTaGCTCAGAGGGACCAAAGTC +
Preference number: 4 (lower is better)
Translates to: GSTFLSAEVGTVTQRIRCWDTQW*LRGTKV
Trigger: GACTTTGGTCCCTCTGAGCCACCACTGAGTGTCCCA...GCACCTAATCCTCTGGGTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTGAGCAGGCACTATTTTaGGGGGCTGCTTGTGTCTCA +
Preference number: 4 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSEQALF*GAACVS
Trigger: TGAGACACAAGCAGCCCCCCAAAATAGTGCCTGCTC...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCGGGCATGGAGAGGCTTaGCCTGAGTTAGGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSGHGEA*PELGQS
Trigger: TGACTGCCCTAACTCAGGCCAAGCCTCTCCATGCCC...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCAACATGTCTCTCATGTaGTCAAGCTGGCGGCAGTTG +
Preference number: 4 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGNMSLM*SSWRQL
Trigger: CAACTGCCGCCAGCTTGACCACATGAGAGACATGTT...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp AAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGATCACAGGCACGTCTGCTTGTTaGCCGTGTCGAAATCATAGC +
Preference number: 4 (lower is better)
Translates to: KGWELFPKAFPTSFLKITGTSAC*PCRNHS
Trigger: GCTATGATTTCGACACGGTCAACAAGCAGACGTGCC...TGTGATCTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp TTATTTAATACATGTGAGCACACTGTAGCTGACTTCAGACACACCAGAAGAGGGACTTGCCCTCTGTGGTaGTGGCCTCTGGCCGACGGT +
Preference number: 4 (lower is better)
Translates to: LFNTCEHTVADFRHTRRGTCPLW*WPLADG
Trigger: ACCGTCGGCCAGAGGCCATCACCACAGAGGGCAAGT...CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTGCTCACATGTATTAAATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp CACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTGCGCTCAAAGGTGTCCATaGAGTCCAGGTTGGGTTGCA +
Preference number: 4 (lower is better)
Translates to: HHVDPEDQTLVVRLSSKCAQRCP*SPGWVA
Trigger: TGCAACCCAACCTGGACTTCATGGACACCTTTGAGC...GCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp TTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCCGGCCTGGGACTGGCAAGATGTTCCCCTaGGAAGGTGGGCTGCTAGGA +
Preference number: 4 (lower is better)
Translates to: LTVSLTGVTLYNLGRPGTGKMFP*EGGLLG
Trigger: TCCTAGCAGCCCACCTTCTCAGGGGAACATCTTGCC...AGTCCCAGGCCGGCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGGGCACACAGGATTCTTaGGCTTCTCCAAATACTGCA +
Preference number: 4 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLGTQDS*ASPNTA
Trigger: TGCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCC...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp TATCCAGGACAGAAGTCAAGGTCAGGGCCCTCTGATTGGGCAGATTCATCAGGCTGGCTGGATCATGTCTaGGTTTCCCAGATGTGCTAT +
Preference number: 4 (lower is better)
Translates to: YPGQKSRSGPSDWADSSGWLDHV*VSQMCY
Trigger: ATAGCACATCTGGGAAACGCAGACATGATCCAGCCA...GCCTGATGAATCTGCCCAATCAGAGGGCCCTGACCTTGACTTCTGTCCTGGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCAAGTCCAGGTTGGGTTaGAAAGGGATCAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSKSRLG*KGIRPG
Trigger: GCCAGGCCTGATCCCTTTGCAACCCAACCTGGACTT...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAAGAGGGACCAAAGTCTaGAGGCTGAATAAACGGGTC +
Preference number: 4 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLARGTKV*RLNKRV
Trigger: GACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCT...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCGCAAACTTCTGTGGCTaGAGGAAAGCTGGTGGAGTT +
Preference number: 4 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLANFCG*RKAGGV
Trigger: AACTCCACCAGCTTTCCTGCAGCCACAGAAGTTTGC...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp AGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCAGTTGGCCTCCACGCCCATTATCATGGGTAAGGGTTaGAGAGGCTGTGTGGGTAAT +
Preference number: 4 (lower is better)
Translates to: SLHGWCLLNPVQLASTPIIMGKG*RGCVGN
Trigger: ATTACCCACACAGCCTCTGCAACCCTTACCCATGAT...AATGGGCGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp CTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGGGAGTGAGGCAGCTGGAGCAATaGAGGCATTCTTCAACACCA +
Preference number: 4 (lower is better)
Translates to: LKNNFTLSLGKGGVLVGVRQLEQ*RHSSTP
Trigger: TGGTGTTGAAGAATGCCTGCATTGCTCCAGCTGCCT...CACTCCCACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp CCTGTAAACACGTTTTGGGGGAAAGCTGAGGGAGGGCCACCATACTATTCCCATGCTGAGATGTGCTTCTaGCGGTTCTTTAATGCAGCC +
Preference number: 4 (lower is better)
Translates to: PVNTFWGKAEGGPPYYSHAEMCF*RFFNAA
Trigger: GGCTGCATTAAAGAACCGGCAGAAGCACATCTCAGC...ATGGGAATAGTATGGTGGCCCTCCCTCAGCTTTCCCCCAAAACGTGTTTACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCGCTGAGATGTGCTTCTaGCGGTTCTTTAATGCAGCC +
Preference number: 4 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLAEMCF*RFFNAA
Trigger: GGCTGCATTAAAGAACCGGCAGAAGCACATCTCAGC...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp AAAGGTTCCCAAGATGGGATACTGCTGTTGGCAGGCCTCAAACCTGCTTCAGACTACTCCATGGTCTTCTaGAGTGTGATAGCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KGSQDGILLLAGLKPASDYSMVF*SVIAWL
Trigger: CAGCCACGCTATCACACTGCAGAAGACCATGGAGTA...GTCTGAAGCAGGTTTGAGGCCTGCCAACAGCAGTATCCCATCTTGGGAACCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp CGGCCTGGGACTTACTCTGTAACTCAGACTGTCCTCAAGTTCAAATTCTTCCTGTGTGGTGATGGCCTCTaGCCGACGGTGTTCATCTAC +
Preference number: 4 (lower is better)
Translates to: RPGTYSVTQTVLKFKFFLCGDGL*PTVFIY
Trigger: GTAGATGAACACCGTCGGCCAGAGGCCATCACCACA...CAGGAAGAATTTGAACTTGAGGACAGTCTGAGTTACAGAGTAAGTCCCAGGCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCGGGATCAGGCCTGGCTaGATCATGTCTGCGTTTCCC +
Preference number: 4 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSGIRPG*IMSAFP
Trigger: GGGAAACGCAGACATGATCCAGCCAGGCCTGATCCC...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGAGGAGAAGAGATCCTaGAAAGGCTCAAAGGTGTCC +
Preference number: 4 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLAEEKRS*KGSKVS
Trigger: GGACACCTTTGAGCCTTTCCAGGATCTCTTCTCCTC...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGAACCCTGGCCCTCTGTaGGATCCAGGGAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: CPQVQILPAATFQALCLQNPGPL*DPGRGL
Trigger: CAGCCCCCTCCCTGGATCCCACAGAGGGCCAGGGTT...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCTGCAGTGTGATAGCGTaGCTGGTCTGCTTGGAATTA +
Preference number: 4 (lower is better)
Translates to: LPASSTRASVSTSSPEAACSVIA*LVCLEL
Trigger: TAATTCCAAGCAGACCAGCCACGCTATCACACTGCA...GGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp GCTGATGGAGTCACAAGAAATGGAGAGACTTCACTGTaGCGACAGAGGCCAAAAAGTGTGCAGGGGTTGCCA +
Preference number: 4 (lower is better)
Translates to: ADGVTRNGETSL*RQRPKSVQGLP
Trigger: TGGCAACCCCTGCACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCATCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR TCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACACTCGAAGAGCTTGGTaGGCGACGCATCGATGGACA +
Preference number: 4 (lower is better)
Translates to: AFILFHSNVTATFLLHLHTRRAW*ATHRWT
Trigger: TGTCCATCGATGCGTCGCTCACCAAGCTCTTCGAGT...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTTCTCTTCAGAGGAGCTaGTGTCATGATCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSSLQRS*CHDHLL
Trigger: CAGAAGGTGATCATGACATCAGCTCCTCTGAAGAGA...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp AGCCATCTCTGCAGCCTGACCATACTACTTTTTGAAACATACAGAATAGAAAGAGGCGGGTGCTCGCGGTaGGGAGAGGACACCATGAAG +
Preference number: 4 (lower is better)
Translates to: SHLCSLTILLFETYRIERGGCSR*GEDTMK
Trigger: CTTCATGGTGTCCTCTCCGCACCGCGAGCACCCGCC...TCTTTCTATTCTGTATGTTTCAAAAAGTAGTATGGTCAGGCTGCAGAGATGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGGCACACAGGATTCTTaGGCTTCTCCAAATACTGCA +
Preference number: 4 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLAGTQDS*ASPNTA
Trigger: TGCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCC...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCTGCATCCGCTCCTGCTaGAGTTTGGTGATGTACTCC +
Preference number: 4 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSCIRSC*SLVMYS
Trigger: GGAGTACATCACCAAACTGCAGCAGGAGCGGATGCA...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp CCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAACTCACCTGGAGCAATaGAGGCATTCTTCAACACCA +
Preference number: 4 (lower is better)
Translates to: PPTTWIPRIKLWLLDLAVTHLEQ*RHSSTP
Trigger: TGGTGTTGAAGAATGCCTGCATTGCTCCAGGTGAGT...TACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGAGAAAGGGAAACATTaGTCCCTAGGCAATTCTGGC +
Preference number: 4 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLAEKGKH*SLGNSG
Trigger: GCCAGAATTGCCTAGGGAGCAATGTTTCCCTTTCTC...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCATCTTGTCCCGCCACTaGAGCTTCAGGCCCTTGAAA +
Preference number: 4 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSILSRH*SFRPLK
Trigger: TTTCAAGGGCCTGAAGCTCCAGTGGCGGGACAAGAT...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp AAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGATACGGGTCACCACTCCTCCATGGGGACTaGGGTTTTCCAGCCATCCCC +
Preference number: 4 (lower is better)
Translates to: KFFLLQPFKHCVYRYGSPLLHGD*GFPAIP
Trigger: GGGGATGGCTGGAAAACCCCAGTCCCCATGGAGGAG...TGGTGACCCGTATCTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTGGCCAGGCCACGGGTTaGTGTGAAGAGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVGQATG*CEESVE
Trigger: CTCCACACTCTCTTCACACCAACCCGTGGCCTGGCC...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CAGGGTAGGATGAACAGACAGAGATTCCTGACATTGTGGAAGGAAGACAAGAGCTCCAGCAAACTTCTGTaGCTGCAGGAAAGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QGRMNRQRFLTLWKEDKSSSKLL*LQESWW
Trigger: CCACCAGCTTTCCTGCAGCCACAGAAGTTTGCTGGA...GCTCTTGTCTTCCTTCCACAATGTCAGGAATCTCTGTCTGTTCATCCTACCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp TGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTGCCTTCACTACAAGGCCCTGGTTCTaGCTGAAGGTGGTGGCAGAA +
Preference number: 4 (lower is better)
Translates to: WIPRIKLWLLDLAVSAFTTRPWF*LKVVAE
Trigger: TTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGT...AGTGAAGGCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CATTTTGGCCGATATTCATATTCTCCACAGTGCCACCATTTTGAAGTTTCTTCTGAGACGGGGCTAGGCTaGCTGCTCGTGCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: HFGRYSYSPQCHHFEVSSETGLG*LLVLWL
Trigger: CAGCCACAGCACGAGCAGCCAGCCTAGCCCCGTCTC...AGAAGAAACTTCAAAATGGTGGCACTGTGGAGAATATGAATATCGGCCAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTCGTGGCTGGTCTGCTTaGAATTATTGGAGATCAAGC +
Preference number: 4 (lower is better)
Translates to: PLPASSTRASVSTSSPEARGWSA*NYWRSS
Trigger: GCTTGATCTCCAATAATTCCAAGCAGACCAGCCACG...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp GCACAGGTTGTCTCCTTGTTTTTCACTTGCTGGCCCTGGACCCCAATACAACTCTGCAGTGTGATAGCGTaGCTGGTCTGCTTGGAATTA +
Preference number: 4 (lower is better)
Translates to: AQVVSLFFTCWPWTPIQLCSVIA*LVCLEL
Trigger: TAATTCCAAGCAGACCAGCCACGCTATCACACTGCA...GAGTTGTATTGGGGTCCAGGGCCAGCAAGTGAAAAACAAGGAGACAACCTGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGCCGTCAGGATGGAGGTaGTGGTACTCAGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: YTISAFKRMPDPVRESQRPSGWR*WYSADG
Trigger: TCCGTCAGCTGAGTACCACCACCTCCATCCTGACGG...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR TCA 90 bp AGCCATCTCTGCAGCCTGACCATACTACTTTTTGAAACATACAGAATAGAAAGATCGTCCTCGGGCACCTaGGGCTTGAGCAGCACCGAA +
Preference number: 4 (lower is better)
Translates to: SHLCSLTILLFETYRIERSSSGT*GLSSTE
Trigger: TTCGGTGCTGCTCAAGCCTCAGGTGCCCGAGGACGA...TCTTTCTATTCTGTATGTTTCAAAAAGTAGTATGGTCAGGCTGCAGAGATGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp TTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCCGGCCTGGGACTAGCCATCTAGTGGGGTaGCAAAGTGGCACACAGGAT +
Preference number: 4 (lower is better)
Translates to: LTVSLTGVTLYNLGRPGTSHLVG*QSGTQD
Trigger: ATCCTGTGTGCCACTTTGTCACCCCACTAGATGGCT...AGTCCCAGGCCGGCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTGGCCACGGGTTGGTGTaGAGAGAGTGTGGAGAAGAG +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVGHGLV*RECGEE
Trigger: CTCTTCTCCACACTCTCTTCACACCAACCCGTGGCC...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGGGCCCTGGTTCTGGCTaGAGGTGGTGGCAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: CPQVQILPAATFQALCLQGPGSG*RWWQKH
Trigger: ATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCC...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGGAATCACAATCTCAATaGGGCTTTTCCAGTACTTGC +
Preference number: 4 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKESQSQ*GFSSTC
Trigger: GCAAGTACTGGAAAAGCCGCATTGAGATTGTGATTC...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp TGGAGTCACAAGAAATGGAGAGACTTCACTGTTGCGACAGAGGCCAAAAAGTGTGTCATGATCACCTTCTaGGGTTGGCCTGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: WSHKKWRDFTVATEAKKCVMITF*GWPEKA
Trigger: TGCCTTCTCAGGCCAACCGCAGAAGGTGATCATGAC...ACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp AGCGACAAGGGGTGGGAGCTGTTTCCTAAGGCTTTTCCCACCAGCTTCCTTAAGTGTTCAGCTGAGATGTaGTTCTGCCGGTTCTTTAAT +
Preference number: 4 (lower is better)
Translates to: SDKGWELFPKAFPTSFLKCSAEM*FCRFFN
Trigger: ATTAAAGAACCGGCAGAAGCACATCTCAGCTGAACA...CTTAAGGAAGCTGGTGGGAAAAGCCTTAGGAAACAGCTCCCACCCCTTGTCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp TCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTTACTCCATGGTCTTCTaGAGTGTGATAGCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: SPSEEQFHLVLGKRRGAGYSMVF*SVIAWL
Trigger: CAGCCACGCTATCACACTGCAGAAGACCATGGAGTA...ACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp ACCCACGCAATTTTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCAATCATAGCCCTTCTTaGGCGGGTGCTCGCGGTGCG +
Preference number: 4 (lower is better)
Translates to: THAILTVSLTGVTLYNLGNHSPS*AGARGA
Trigger: CGCACCGCGAGCACCCGCCCAAGAAGGGCTATGATT...GCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAAAATTGCGTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp TTATTTAATACATGTGAGCACACTGTAGCTGACTTCAGACACACCAGAAGAGGGGGGATCAGGCCTGGCTaGATCATGTCTGCGTTTCCC +
Preference number: 4 (lower is better)
Translates to: LFNTCEHTVADFRHTRRGGIRPG*IMSAFP
Trigger: GGGAAACGCAGACATGATCCAGCCAGGCCTGATCCC...CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTGCTCACATGTATTAAATAA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTGCACATGGAGCCAAAAATaGATCGGCTGGAGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: HHVDPEDQTLVVRLSSKCTWSQK*IGWRRR
Trigger: TCTTCTCCTCCAGCCGATCCATTTTTGGCTCCATGT...GCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp GCCTTCATACTCTTCCACAGCAATGTAACTGCCACTTTCCTCTTACACTTGCACGTGATAACAAGGCCCTaGTTCTGGCTGAAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: AFILFHSNVTATFLLHLHVITRP*FWLKVV
Trigger: CACCACCTTCAGCCAGAACCAGGGCCTTGTTATCAC...GTGCAAGTGTAAGAGGAAAGTGGCAGTTACATTGCTGTGGAAGAGTATGAAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGTCTTGCACTGTACTTaGAGAAAAGAGTCGAGAGAC +
Preference number: 4 (lower is better)
Translates to: PLPASSTRASVSTSSPEAVLHCT*RKESRD
Trigger: GTCTCTCGACTCTTTTCTCCAAGTACAGTGCAAGAC...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTCTCCCTAGGCAATTCTaGCTGACCACACCCCCAACC +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVLPRQF*LTTPPT
Trigger: GGTTGGGGGTGTGGTCAGCCAGAATTGCCTAGGGAG...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
3UTR CAA 72 bp AGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCAGTaGGCCTCCACGCCCATTATTTTCCATGTGATCTCA +
Preference number: 4 (lower is better)
Translates to: SLHGWCLLNPVQ*ASTPIIFHVIS
Trigger: TGAGATCACATGGAAAATAATGGGCGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGAATCACAATCTCAATaGGGCTTTTCCAGTACTTGC +
Preference number: 4 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLAESQSQ*GFSSTC
Trigger: GCAAGTACTGGAAAAGCCGCATTGAGATTGTGATTC...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCCGGCCTGGGACTAGGTCCTCATCCTTGTaGTGCTGCAGCCTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: LTVSLTGVTLYNLGRPGTRSSSL*CCSLFL
Trigger: CAAGAAAAGGCTGCAGCAGCACAAGGATGAGGACCT...AGTCCCAGGCCGGCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGGTCATGATCACCTTCTaGGGTTGGCCTGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: YTISAFKRMPDPVRESQRVMITF*GWPEKA
Trigger: TGCCTTCTCAGGCCAACCGCAGAAGGTGATCATGAC...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp CATTTTGGCCGATATTCATATTCTCCACAGTGCCACCATTTTGAAGTTTCTTCTCCATGCAGTGAGACCTaGTCGCCCTTCACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: HFGRYSYSPQCHHFEVSSPCSET*SPFTRE
Trigger: CTCCCTGGTGAAGGGCGAGCAGGTCTCACTGCATGG...AGAAGAAACTTCAAAATGGTGGCACTGTGGAGAATATGAATATCGGCCAAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGAATCATAGCCCTTCTTaGGCGGGTGCTCGCGGTGCG +
Preference number: 4 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERNHSPS*AGARGA
Trigger: CGCACCGCGAGCACCCGCCCAAGAAGGGCTATGATT...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp ACCCACGCAATTTTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCGTGAGTCCTCCTCCATaGGGACTGGGGTTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: THAILTVSLTGVTLYNLGVSPPP*GLGFSS
Trigger: GCTGGAAAACCCCAGTCCCCATGGAGGAGGACTCAC...GCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAAAATTGCGTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CTTAGCAGTAAGTGCCTTCACTTATTGAGCCATCTCACCCACGCAATTTTAACTCTGTGGGACACTCAGTaGTGGCTCAGAGGGACCAAA +
Preference number: 4 (lower is better)
Translates to: LSSKCLHLLSHLTHAILTLWDTQ*WLRGTK
Trigger: TTTGGTCCCTCTGAGCCACCACTGAGTGTCCCACAG...AGTTAAAATTGCGTGGGTGAGATGGCTCAATAAGTGAAGGCACTTACTGCTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTGCCTTCACTTATTGGTGGCAGAAGCATCATaGGTAAGGGTTGCAGAGGCT +
Preference number: 4 (lower is better)
Translates to: PEDQTLVVRLSSKCLHLLVAEAS*VRVAEA
Trigger: AGCCTCTGCAACCCTTACCCATGATGCTTCTGCCAC...CAATAAGTGAAGGCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp TTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCCGGCCTGGGACTAGTGTCGCTGAATTCTaGCATGAGCATGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: LTVSLTGVTLYNLGRPGTSVAEF*HEHVCV
Trigger: GACACAGACATGCTCATGTCAGAATTCAGCGACACT...AGTCCCAGGCCGGCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR TCA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGCTAGGCAATTCTGGCTaGCCACACCCCCAACCAACT +
Preference number: 4 (lower is better)
Translates to: CPQVQILPAATFQALCLQLGNSG*PHPQPT
Trigger: AGTTGGTTGGGGGTGTGGTCAGCCAGAATTGCCTAG...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp AAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGATACGGGTCACCAATCTTGTCCCGCCACTaGAGCTTCAGGCCCTTGAAA +
Preference number: 4 (lower is better)
Translates to: KFFLLQPFKHCVYRYGSPILSRH*SFRPLK
Trigger: TTTCAAGGGCCTGAAGCTCCAGTGGCGGGACAAGAT...TGGTGACCCGTATCTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTAGTGGGGTGACAAAGTaGCACACAGGATTCTTGCGC +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVSGVTK*HTGFLR
Trigger: GCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACT...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCACATGGAGCCAAAAATaGATCGGCTGGAGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSTWSQK*IGWRRR
Trigger: TCTTCTCCTCCAGCCGATCCATTTTTGGCTCCATGT...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTCCAGCAAACTTCTGTaGCTGCAGGAAAGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVSSKLL*LQESWW
Trigger: CCACCAGCTTTCCTGCAGCCACAGAAGTTTGCTGGA...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTGTGATAACAAGGCCCTaGTTCTGGCTGAAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVVITRP*FWLKVV
Trigger: CACCACCTTCAGCCAGAACCAGGGCCTTGTTATCAC...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp GAGCCATCTCACCCACGCAATTTTAACTGTTTCTTTAACTGGGGTCACCTTATAGAGCAGGCACTATTTTaGGGGGCTGCTTGTGTCTCA +
Preference number: 4 (lower is better)
Translates to: EPSHPRNFNCFFNWGHLIEQALF*GAACVS
Trigger: TGAGACACAAGCAGCCCCCCAAAATAGTGCCTGCTC...TATAAGGTGACCCCAGTTAAAGAAACAGTTAAAATTGCGTGGGTGAGATGGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp TCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGTGCTGGTGTCTTGCACTGTACTTaGAGAAAAGAGTCGAGAGAC +
Preference number: 4 (lower is better)
Translates to: SPSEEQFHLVLGKRRGAGVLHCT*RKESRD
Trigger: GTCTCTCGACTCTTTTCTCCAAGTACAGTGCAAGAC...ACCAGCACCCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CCA 90 bp AGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGCACACACACCCAGTTCTGCTTGGAATTATTaGAGATCAAGCTATTCAGGG +
Preference number: 4 (lower is better)
Translates to: RHVYLPGKQRERGAHTPSSAWNY*RSSYSG
Trigger: CCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGA...ACTGGGTGTGTGTGCGCCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp TGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTAAGTGCCTTCACTATACTGCATATACCATaGCCTCCAGATGGCGTTGTT +
Preference number: 4 (lower is better)
Translates to: WIPRIKLWLLDLAVSAFTILHIP*PPDGVV
Trigger: AACAACGCCATCTGGAGGGCATGGTATATGCAGTAT...AGTGAAGGCACTTACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGCGCTTCTCCAAATACTaGATATACCATGCCCTCCAG +
Preference number: 4 (lower is better)
Translates to: YTISAFKRMPDPVRESQRRFSKY*IYHALQ
Trigger: CTGGAGGGCATGGTATATGCAGTATTTGGAGAAGCG...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp TGGAGTCACAAGAAATGGAGAGACTTCACTGTTGCGACAGAGGCCAAAAAGTGTCCATCCCCATGTTTATaGCAATACAGCATGTCATCG +
Preference number: 4 (lower is better)
Translates to: WSHKKWRDFTVATEAKKCPSPCL*QYSMSS
Trigger: CGATGACATGCTGTATTGGCATAAACATGGGGATGG...ACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR GCA 90 bp CTCAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTGGCTGGATCATGTCTaGGTTTCCCAGATGTGCTAT +
Preference number: 4 (lower is better)
Translates to: LRLSSSSNSSCCNLSSIVWLDHV*VSQMCY
Trigger: ATAGCACATCTGGGAAACGCAGACATGATCCAGCCA...CACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp AGCCATCTCTGCAGCCTGACCATACTACTTTTTGAAACATACAGAATAGAAAGATGGGACACTCAGTGGTaGCTCAGAGGGACCAAAGTC +
Preference number: 4 (lower is better)
Translates to: SHLCSLTILLFETYRIERWDTQW*LRGTKV
Trigger: GACTTTGGTCCCTCTGAGCCACCACTGAGTGTCCCA...TCTTTCTATTCTGTATGTTTCAAAAAGTAGTATGGTCAGGCTGCAGAGATGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp CAGACTGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTCCCAACCAACTCACCTaGAGCAATGCAGGCATTCTT +
Preference number: 4 (lower is better)
Translates to: QTVLKFKFFLLQPFKHCVPNQLT*SNAGIL
Trigger: AAGAATGCCTGCATTGCTCCAGGTGAGTTGGTTGGG...AACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACAGTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp AAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGATACGGGTCACCACGCTTCTCCAAATACTaGATATACCATGCCCTCCAG +
Preference number: 4 (lower is better)
Translates to: KFFLLQPFKHCVYRYGSPRFSKY*IYHALQ
Trigger: CTGGAGGGCATGGTATATGCAGTATTTGGAGAAGCG...TGGTGACCCGTATCTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp TGGAGTCACAAGAAATGGAGAGACTTCACTGTTGCGACAGAGGCCAAAAAGTGTCAGAATTTCCAATTCTaGAGGGTCCTGCTTTTCACA +
Preference number: 4 (lower is better)
Translates to: WSHKKWRDFTVATEAKKCQNFQF*RVLLFT
Trigger: TGTGAAAAGCAGGACCCTGCAGAATTGGAAATTCTG...ACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGAAGGAGGAGGCAACATaGAGCCAAAAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: CPQVQILPAATFQALCLQKEEAT*SQKWIG
Trigger: GCCGATCCATTTTTGGCTCCATGTTGCCTCCTCCTT...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp GTATCTGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGGGGGAGACTGAGGACTaGGACTTTGTTCTGATGGGC +
Preference number: 4 (lower is better)
Translates to: VSVYLKRRHVYLPGKQREGETED*DFVLMG
Trigger: GCCCATCAGAACAAAGTCCCAGTCCTCAGTCTCCCC...CTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACAGATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp AAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGATACGGGTCACCACCATCCCCATGTTTATaGCAATACAGCATGTCATCG +
Preference number: 4 (lower is better)
Translates to: KFFLLQPFKHCVYRYGSPPSPCL*QYSMSS
Trigger: CGATGACATGCTGTATTGGCATAAACATGGGGATGG...TGGTGACCCGTATCTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR GCA 90 bp ACCCACGCAATTTTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCATCATGGGTAAGGGTTaGAGAGGCTGTGTGGGTAAT +
Preference number: 4 (lower is better)
Translates to: THAILTVSLTGVTLYNLGIMGKG*RGCVGN
Trigger: ATTACCCACACAGCCTCTGCAACCCTTACCCATGAT...GCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAAAATTGCGTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGAAGGAGGAGGCAACATaGAGCCAAAAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERKEEAT*SQKWIG
Trigger: GCCGATCCATTTTTGGCTCCATGTTGCCTCCTCCTT...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGCGTGGCTGGTCTGCTTaGAATTATTGGAGATCAAGC +
Preference number: 4 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERRGWSA*NYWRSS
Trigger: GCTTGATCTCCAATAATTCCAAGCAGACCAGCCACG...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR GCA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGTGTTCAGCTGAGATGTaGTTCTGCCGGTTCTTTAAT +
Preference number: 4 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERCSAEM*FCRFFN
Trigger: ATTAAAGAACCGGCAGAAGCACATCTCAGCTGAACA...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
3UTR CAA 72 bp TTCACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTaGTGGTTTCTCCATTTTGGCCGATATTCATATTCT +
Preference number: 4 (lower is better)
Translates to: FTETLAEISQVA*WFLHFGRYSYS
Trigger: AGAATATGAATATCGGCCAAAATGGAGAAACCACAAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS TCA 90 bp GCTCGTCTGTGTCCGAGTCGTCGTCGTCCTCGGGCACCTGAGGCTTaGGCAGCACCGAACGGCCCCGACTGCGGGGCCGGCGCGGCGAAC +
Preference number: 5 (lower is better)
Translates to: ARLCPSRRRPRAPEA*AAPNGPDCGAGAAN
Trigger: GTTCGCCGCGCCGGCCCCGCAGTCGGGGCCGTTCGGTGCTGCTCAAGCCTCAGGTGCCCGAGGACGACGACGACTCGGACACAGACGAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 90 bp GGAGACGGCTCGTCTGTGTCCGAGTCGTCGTCGTCCTCGGGCACCTaGGGCTTGAGCAGCACCGAACGGCCCCGACTGCGGGGCCGGCGC +
Preference number: 5 (lower is better)
Translates to: GDGSSVSESSSSSGT*GLSSTERPRLRGRR
Trigger: GCGCCGGCCCCGCAGTCGGGGCCGTTCGGTGCTGCTCAAGCCTCAGGTGCCCGAGGACGACGACGACTCGGACACAGACGAGCCGTCTCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp TGGCCTGAGTTAGGGCAGTCACGACTAGAGCCCGTGGCAGGGACCTaGGGACTACCCCCATGCAGTGAGACCTGCTCGCCCTTCACCAGG +
Preference number: 5 (lower is better)
Translates to: WPELGQSRLEPVAGT*GLPPCSETCSPFTR
Trigger: CCTGGTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGGCTCTAGTCGTGACTGCCCTAACTCAGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS TCA 90 bp ACGACTAGAGCCCGTGGCAGGGACCTGGGGACTACCCCCATGCAGTaGGACCTGCTCGCCCTTCACCAGGGAGTCTTGCACTGTACTTGG +
Preference number: 5 (lower is better)
Translates to: TTRARGRDLGTTPMQ*DLLALHQGVLHCTW
Trigger: CCAAGTACAGTGCAAGACTCCCTGGTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGGCTCTAGTCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS GCA 90 bp CAGTCACGACTAGAGCCCGTGGCAGGGACCTGGGGACTACCCCCATaGAGTGAGACCTGCTCGCCCTTCACCAGGGAGTCTTGCACTGTA +
Preference number: 5 (lower is better)
Translates to: QSRLEPVAGTWGLPP*SETCSPFTRESCTV
Trigger: TACAGTGCAAGACTCCCTGGTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGGCTCTAGTCGTGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 90 bp GGAGAAAAGAGTCGAGAGACGGGGCTAGGCTGGCTGCTCGTGCTGTaGCTGAGGAACTCCGTGACTCCAGAAGCCCTGGTGATGGCAGCA +
Preference number: 5 (lower is better)
Translates to: GEKSRETGLGWLLVL*LRNSVTPEALVMAA
Trigger: TGCTGCCATCACCAGGGCTTCTGGAGTCACGGAGTTCCTCAGCCACAGCACGAGCAGCCAGCCTAGCCCCGTCTCTCGACTCTTTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 90 bp AGCTGGCGGCAGTTGACTGGGACTCCTGTGGCAGGTAGCAGCTGTTaGCAGGAGATGATGGTGGTGTTAAGCTCCTCGATCTCCTCCCGC +
Preference number: 5 (lower is better)
Translates to: SWRQLTGTPVAGSSC*QEMMVVLSSSISSR
Trigger: GCGGGAGGAGATCGAGGAGCTTAACACCACCATCATCTCCTGCCAACAGCTGCTACCTGCCACAGGAGTCCCAGTCAACTGCCGCCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS CCA 90 bp ACGGGTGACAGTGCCAAAGCACAGGGGGATGAGGAGGGGGTTGGATaGTGTGCTGTGATAACAAGGCCCTGGTTCTGGCTGAAGGTGGTG +
Preference number: 5 (lower is better)
Translates to: TGDSAKAQGDEEGVG*CAVITRPWFWLKVV
Trigger: CACCACCTTCAGCCAGAACCAGGGCCTTGTTATCACAGCACACCATCCAACCCCCTCCTCATCCCCCTGTGCTTTGGCACTGTCACCCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 90 bp AGGAGCTGGTCTTGCCGAAGCTATAGGTCTGGCACGTCTGCTTGTTaGCCGTGTCGAAATCATAGCCCTTCTTGGGCGGGTGCTCGCGGT +
Preference number: 5 (lower is better)
Translates to: RSWSCRSYRSGTSAC*PCRNHSPSWAGARG
Trigger: ACCGCGAGCACCCGCCCAAGAAGGGCTATGATTTCGACACGGTCAACAAGCAGACGTGCCAGACCTATAGCTTCGGCAAGACCAGCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp GGTGTGTCAGGAAGGGTACGAGGGGGATCTCCAGGCATCTCATGCAGTCACATGGAAGTCCAGGTTGGGTaGCAAAGGGATCAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: GVSGRVRGGSPGISCSHMEVQVG*QRDQAW
Trigger: CCAGGCCTGATCCCTTTGCAACCCAACCTGGACTTC...CATGTGACTGCATGAGATGCCTGGAGATCCCCCTCGTACCCTTCCTGACACACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS TCA 90 bp TGTGGGACACTCAGTGGTGGCTCAGAGGGACCAAAGTCTGCAGGCTaGATAAACGGGTCCACCGTTTGGGATGTGCGTTCACAACCCTGG +
Preference number: 5 (lower is better)
Translates to: CGTLSGGSEGPKSAG*INGSTVWDVRSQPW
Trigger: CCAGGGTTGTGAACGCACATCCCAAACGGTGGACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCTGAGCCACCACTGAGTGTCCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp TGTAATGAGGCTATTGGGCAGGCTCGCAGGAGGGAGAGCTGTATTTaGCAAGATGTTCCCCTGAGAAGGTGGGCTGCTAGGATCTGCGGC +
Preference number: 5 (lower is better)
Translates to: CNEAIGQARRRESCI*QDVPLRRWAARICG
Trigger: GCCGCAGATCCTAGCAGCCCACCTTCTCAGGGGAACATCTTGCCAAATACAGCTCTCCCTCCTGCGAGCCTGCCCAATAGCCTCATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp GGTCATCGTAAAGACAGGGAGGAAGGGCTGTGGGACACTCAGTGGTaGCTCAGAGGGACCAAAGTCTGCAGGCTGAATAAACGGGTCCAC +
Preference number: 5 (lower is better)
Translates to: GHRKDREEGLWDTQW*LRGTKVCRLNKRVH
Trigger: GTGGACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCTGAGCCACCACTGAGTGTCCCACAGCCCTTCCTCCCTGTCTTTACGATGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp GAGGAGGGGGTTGGATGGTGTGCTGTGATAACAAGGCCCTGGTTCTaGCTGAAGGTGGTGGCAGAAGCATCATGGGTAAGGGTTGCAGAG +
Preference number: 5 (lower is better)
Translates to: EEGVGWCAVITRPWF*LKVVAEASWVRVAE
Trigger: CTCTGCAACCCTTACCCATGATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGTTATCACAGCACACCATCCAACCCCCTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp GGGGATGAGGAGGGGGTTGGATGGTGTGCTGTGATAACAAGGCCCTaGTTCTGGCTGAAGGTGGTGGCAGAAGCATCATGGGTAAGGGTT +
Preference number: 5 (lower is better)
Translates to: GDEEGVGWCAVITRP*FWLKVVAEASWVRV
Trigger: AACCCTTACCCATGATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGTTATCACAGCACACCATCCAACCCCCTCCTCATCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp CTCAGGACCTCTGGAGAGCAGCCAGTGCTCTTAGCTGCTGAGCCATCTCTGCAGGAAAGGTCCTCATCCTaGTGCTGCTGCAGCCTTTTC +
Preference number: 5 (lower is better)
Translates to: LRTSGEQPVLLAAEPSLQERSSS*CCCSLF
Trigger: GAAAAGGCTGCAGCAGCACAAGGATGAGGACCTTTC...CTGCAGAGATGGCTCAGCAGCTAAGAGCACTGGCTGCTCTCCAGAGGTCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp GTGAGACAGAGACCCTTGAGGAGCCAGGGTAGGATGAACAGACAGAGATTCCTGTTGTTGAGCCGGATCTaGTCCCGCCACTGGAGCTTC +
Preference number: 5 (lower is better)
Translates to: VRQRPLRSQGRMNRQRFLLLSRI*SRHWSF
Trigger: GAAGCTCCAGTGGCGGGACAAGATCCGGCTCAACAA...CAGGAATCTCTGTCTGTTCATCCTACCCTGGCTCCTCAAGGGTCTCTGTCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp GGGCTCCCCTCTTTCATGTGGTCTTCTCAGGACAGGCAGCACGGTGAGGCAGGGAGTCTTGCACTGTACTaGGAGAAAAGAGTCGAGAGA +
Preference number: 5 (lower is better)
Translates to: GLPSFMWSSQDRQHGEAGSLALY*EKRVER
Trigger: TCTCTCGACTCTTTTCTCCAAGTACAGTGCAAGACT...CCCTGCCTCACCGTGCTGCCTGTCCTGAGAAGACCACATGAAAGAGGGGAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp AGTGGCCTTCACCTTCTGAAGAACAATTTCACCTTGTCCTTGGGAAAAGGAGGGGCTATTTCTCGTGGGTaGGGCCAGGCCACGGGTTGG +
Preference number: 5 (lower is better)
Translates to: SGLHLLKNNFTLSLGKGGAISRG*GQATGW
Trigger: CCAACCCGTGGCCTGGCCCAACCCACGAGAAATAGC...CCCTCCTTTTCCCAAGGACAAGGTGAAATTGTTCTTCAGAAGGTGAAGGCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp GAGTTTCTAAGCCACACAGCAGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCCTAAGGGCAATGCAGTaGGAACAGGTGCTGGGGCGG +
Preference number: 5 (lower is better)
Translates to: EFLSHTAVCMAGAFLILSLRAMQ*EQVLGR
Trigger: CCGCCCCAGCACCTGTTCCAACTGCATTGCCCTTAG...GGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCTTAGAAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp CTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCCGCTCCTGCTGCAGTTaGGTGATGTACTCCATGGTC +
Preference number: 5 (lower is better)
Translates to: LPASSTRASVSTSSPEAARSCCS*VMYSMV
Trigger: GACCATGGAGTACATCACCAAACTGCAGCAGGAGCG...GGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 90 bp TTTCCCAGATGTGCTATTTCTCGTGGGTTGGGCCAGGCCACGGGTTaGTGTGAAGAGAGTGTGGAGAAGAGAGTGTCGCTGAATTCTGAC +
Preference number: 5 (lower is better)
Translates to: FPRCAISRGLGQATG*CEESVEKRVSLNSD
Trigger: GTCAGAATTCAGCGACACTCTCTTCTCCACACTCTCTTCACACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAGCACATCTGGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp GTGTCCATGAAGTCCAGGTTGGGTTGCAAAGGGATCAGGCCTGGCTaGATCATGTCTGCGTTTCCCAGATGTGCTATTTCTCGTGGGTTG +
Preference number: 5 (lower is better)
Translates to: VSMKSRLGCKGIRPG*IMSAFPRCAISRGL
Trigger: CAACCCACGAGAAATAGCACATCTGGGAAACGCAGACATGATCCAGCCAGGCCTGATCCCTTTGCAACCCAACCTGGACTTCATGGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 90 bp ATAACAAGGCCCTGGTTCTGGCTGAAGGTGGTGGCAGAAGCATCATaGGTAAGGGTTGCAGAGGCTGTGTGGGTAATAACAGGGGTGGAT +
Preference number: 5 (lower is better)
Translates to: ITRPWFWLKVVAEAS*VRVAEAVWVITGVD
Trigger: ATCCACCCCTGTTATTACCCACACAGCCTCTGCAACCCTTACCCATGATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp AGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCAGTTGGCCTCCACGCCCATTGTCTGGCACGTCTGCTaGTTGACCGTGTCGAAATCA +
Preference number: 5 (lower is better)
Translates to: SLHGWCLLNPVQLASTPIVWHVC*LTVSKS
Trigger: TGATTTCGACACGGTCAACAAGCAGACGTGCCAGAC...AATGGGCGTGGAGGCCAACTGGACAGGATTAAGAAGGCACCAGCCATGCAAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTATGCACTCGAAGAGCTaGGTGAGCGACGCATCGATG +
Preference number: 5 (lower is better)
Translates to: PLPASSTRASVSTSSPEAMHSKS*VSDASM
Trigger: CATCGATGCGTCGCTCACCAAGCTCTTCGAGTGCAT...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp TTAACTGTTTCTTTAACTGGGGTCACCTTATATAACCTTGGCCGGCCTGGGACTGCTATTTCTCGTGGGTaGGGCCAGGCCACGGGTTGG +
Preference number: 5 (lower is better)
Translates to: LTVSLTGVTLYNLGRPGTAISRG*GQATGW
Trigger: CCAACCCGTGGCCTGGCCCAACCCACGAGAAATAGC...AGTCCCAGGCCGGCCAAGGTTATATAAGGTGACCCCAGTTAAAGAAACAGTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp CCACTTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTCGCTCCTGCTGCAGTTaGGTGATGTACTCCATGGTC +
Preference number: 5 (lower is better)
Translates to: PLPASSTRASVSTSSPEARSCCS*VMYSMV
Trigger: GACCATGGAGTACATCACCAAACTGCAGCAGGAGCG...AGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp TCACCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTCTGGCACGTCTGCTaGTTGACCGTGTCGAAATCA +
Preference number: 5 (lower is better)
Translates to: SPPTTWIPRIKLWLLDLAVWHVC*LTVSKS
Trigger: TGATTTCGACACGGTCAACAAGCAGACGTGCCAGAC...TGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp TTCCAGCCTCTTCTACAAGAGCCAGTGTGTCAACATCAAGTCCCGAAGCTGCCGTGGCACACAGGATTCTaGCGCTTCTCCAAATACTGC +
Preference number: 5 (lower is better)
Translates to: FQPLLQEPVCQHQVPKLPWHTGF*RFSKYC
Trigger: GCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCA...CGGCAGCTTCGGGACTTGATGTTGACACACTGGCTCTTGTAGAAGAGGCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp TGGAGTCACAAGAAATGGAGAGACTTCACTGTTGCGACAGAGGCCAAAAAGTGTGACTCCCCCGATCTCTaGCCCATCCTGGTAACAGCC +
Preference number: 5 (lower is better)
Translates to: WSHKKWRDFTVATEAKKCDSPDL*PILVTA
Trigger: GGCTGTTACCAGGATGGGCAAGAGATCGGGGGAGTC...ACACTTTTTGGCCTCTGTCGCAACAGTGAAGTCTCTCCATTTCTTGTGACTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS TCA 90 bp CTGGCCGACGGTGTTCATCTACATCAACAGAGCCATCTAGTGGGGTaGCAAAGTGGCACACAGGATTCTTGCGCTTCTCCAAATACTGCA +
Preference number: 5 (lower is better)
Translates to: LADGVHLHQQSHLVG*QSGTQDSCASPNTA
Trigger: TGCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACTAGATGGCTCTGTTGATGTAGATGAACACCGTCGGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 90 bp AAAGCCTTAGAGAAAGGGAAACATTGCTCCCTAGGCAATTCTGGCTaGCCACACCCCCAACCAACTCACCTGGAGCAATGCAGGCATTCT +
Preference number: 5 (lower is better)
Translates to: KALEKGKHCSLGNSG*PHPQPTHLEQCRHS
Trigger: AGAATGCCTGCATTGCTCCAGGTGAGTTGGTTGGGGGTGTGGTCAGCCAGAATTGCCTAGGGAGCAATGTTTCCCTTTCTCTAAGGCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS GCA 90 bp TGCATCCGCTCCTGCTGCAGTTTGGTGATGTACTCCATGGTCTTCTaGAGTGTGATAGCGTGGCTGGTCTGCTTGGAATTATTGGAGATC +
Preference number: 5 (lower is better)
Translates to: CIRSCCSLVMYSMVF*SVIAWLVCLELLEI
Trigger: GATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGAGTACATCACCAAACTGCAGCAGGAGCGGATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp CCTCCCACCACGTGGATCCCGAGGATCAAACTCTGGTTGTTAGACTTAGCAGTATGGCACACAGGATTCTaGCGCTTCTCCAAATACTGC +
Preference number: 5 (lower is better)
Translates to: PPTTWIPRIKLWLLDLAVWHTGF*RFSKYC
Trigger: GCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCA...TACTGCTAAGTCTAACAACCAGAGTTTGATCCTCGGGATCCACGTGGTGGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp CCTGGCCGAGGTGTGTGGGACATATTTCCCACAAGCCCTGTGCCTTCATACTCTAGTCTTGCACTGTACTaGGAGAAAAGAGTCGAGAGA +
Preference number: 5 (lower is better)
Translates to: PGRGVWDIFPTSPVPSYSSLALY*EKRVER
Trigger: TCTCTCGACTCTTTTCTCCAAGTACAGTGCAAGACT...AGAGTATGAAGGCACAGGGCTTGTGGGAAATATGTCCCACACACCTCGGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp AAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGATACGGGTCACCACTAAGGGCAATGCAGTaGGAACAGGTGCTGGGGCGG +
Preference number: 5 (lower is better)
Translates to: KFFLLQPFKHCVYRYGSPLRAMQ*EQVLGR
Trigger: CCGCCCCAGCACCTGTTCCAACTGCATTGCCCTTAG...TGGTGACCCGTATCTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp CTTAGCAGTAAGTGCCTTCACTTATTGAGCCATCTCACCCACGCAATTTTAACTTTGTTGAGCCGGATCTaGTCCCGCCACTGGAGCTTC +
Preference number: 5 (lower is better)
Translates to: LSSKCLHLLSHLTHAILTLLSRI*SRHWSF
Trigger: GAAGCTCCAGTGGCGGGACAAGATCCGGCTCAACAA...AGTTAAAATTGCGTGGGTGAGATGGCTCAATAAGTGAAGGCACTTACTGCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp ATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAGTTCCGAAAGGTCCTCATCCTaGTGCTGCTGCAGCCTTTTC +
Preference number: 5 (lower is better)
Translates to: ISAFKRMPDPVRESQRSSERSSS*CCCSLF
Trigger: GAAAAGGCTGCAGCAGCACAAGGATGAGGACCTTTC...GGAACTCCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS GCA 90 bp GTGATGTACTCCATGGTCTTCTGCAGTGTGATAGCGTGGCTGGTCTaGTTGGAATTATTGGAGATCAAGCTATTCAGGGTGTTAAAGCCC +
Preference number: 5 (lower is better)
Translates to: VMYSMVFCSVIAWLV*LELLEIKLFRVLKP
Trigger: GGGCTTTAACACCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGAGTACATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 90 bp TGCAGTTTGGTGATGTACTCCATGGTCTTCTGCAGTGTGATAGCGTaGCTGGTCTGCTTGGAATTATTGGAGATCAAGCTATTCAGGGTG +
Preference number: 5 (lower is better)
Translates to: CSLVMYSMVFCSVIA*LVCLELLEIKLFRV
Trigger: CACCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGAGTACATCACCAAACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp AAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGATACGGGTCACCAATGCACTCGAAGAGCTaGGTGAGCGACGCATCGATG +
Preference number: 5 (lower is better)
Translates to: KFFLLQPFKHCVYRYGSPMHSKS*VSDASM
Trigger: CATCGATGCGTCGCTCACCAAGCTCTTCGAGTGCAT...TGGTGACCCGTATCTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp GATGGCTTATTCAGATTTCACAGAAACACTTGCAGAGATTTCCCAGGTAGCTTTCGGCTTTTCCAGTACTaGCCCTCTGTGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: DGLFRFHRNTCRDFPGSFRLFQY*PSVVMA
Trigger: GGCCATCACCACAGAGGGCAAGTACTGGAAAAGCCG...AAAGCTACCTGGGAAATCTCTGCAAGTGTTTCTGTGAAATCTGAATAAGCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGCGGCTTTTCCAGTACTaGCCCTCTGTGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: CPQVQILPAATFQALCLQRLFQY*PSVVMA
Trigger: GGCCATCACCACAGAGGGCAAGTACTGGAAAAGCCG...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp TGTCCTCAAGTTCAAATTCTTCCTGCTGCAACCTTTCAAGCATTGTGTTTACAGGAAGTCCAGGTTGGGTaGCAAAGGGATCAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: CPQVQILPAATFQALCLQEVQVG*QRDQAW
Trigger: CCAGGCCTGATCCCTTTGCAACCCAACCTGGACTTC...CTGTAAACACAATGCTTGAAAGGTTGCAGCAGGAAGAATTTGAACTTGAGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp GATGAAAATAACTGTAAACAAACCCCAGTCAAACAGTGTGGTCAGCGCCCATTGTCCATGAAGTCCAGGTaGGGTTGCAAAGGGATCAGG +
Preference number: 5 (lower is better)
Translates to: DENNCKQTPVKQCGQRPLSMKSR*GCKGIR
Trigger: CCTGATCCCTTTGCAACCCAACCTGGACTTCATGGA...CAATGGGCGCTGACCACACTGTTTGACTGGGGTTTGTTTACAGTTATTTTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS-3UTR CAA 90 bp ACACAAGGGAGGCAGTACATTCCTTTCTGCAGAGGTTGGAACAGTAACCCAGAGAATGCAGCCACATTTTaGGGGTCTGTAGATTTCCCT +
Preference number: 5 (lower is better)
Translates to: TQGRQYIPFCRGWNSNPENAATF*GSVDFP
Trigger: AGGGAAATCTACAGACCCCAAAAATGTGGCTGCATT...CTCTGGGTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTGCCTCCCTTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp CGGCCTGGGACTTACTCTGTAACTCAGACTGTCCTCAAGTTCAAATTCTTCCTGAGAGAAAGGGAAACATaGCTCCCTAGGCAATTCTGG +
Preference number: 5 (lower is better)
Translates to: RPGTYSVTQTVLKFKFFLRERET*LPRQFW
Trigger: CCAGAATTGCCTAGGGAGCAATGTTTCCCTTTCTCT...CAGGAAGAATTTGAACTTGAGGACAGTCTGAGTTACAGAGTAAGTCCCAGGCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS CCA 90 bp CGGTGTTCATCTACATCAACAGAGCCATCTAGTGGGGTGACAAAGTaGCACACAGGATTCTTGCGCTTCTCCAAATACTGCATATACCAT +
Preference number: 5 (lower is better)
Translates to: RCSSTSTEPSSGVTK*HTGFLRFSKYCIYH
Trigger: ATGGTATATGCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACTAGATGGCTCTGTTGATGTAGATGAACACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp TTATTTAATACATGTGAGCACACTGTAGCTGACTTCAGACACACCAGAAGAGGGTCCATGAAGTCCAGGTaGGGTTGCAAAGGGATCAGG +
Preference number: 5 (lower is better)
Translates to: LFNTCEHTVADFRHTRRGSMKSR*GCKGIR
Trigger: CCTGATCCCTTTGCAACCCAACCTGGACTTCATGGA...CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTGCTCACATGTATTAAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS-3UTR CAA 90 bp GAGTTTCTAAGCCACACAGCAGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCAAGCCCATCCTGATATaGAAACGCCTTTTCTGTTCA +
Preference number: 5 (lower is better)
Translates to: EFLSHTAVCMAGAFLILSKPILI*KRLFCS
Trigger: TGAACAGAAAAGGCGTTTCAATATCAGGATGGGCTT...GGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCTTAGAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp GAGTTTCTAAGCCACACAGCAGTTTGCATGGCTGGTGCCTTCTTAATCCTGTCCGTCTGCTTGGAATTATaGGAGATCAAGCTATTCAGG +
Preference number: 5 (lower is better)
Translates to: EFLSHTAVCMAGAFLILSVCLEL*EIKLFR
Trigger: CCTGAATAGCTTGATCTCCAATAATTCCAAGCAGAC...GGACAGGATTAAGAAGGCACCAGCCATGCAAACTGCTGTGTGGCTTAGAAACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp ACACAAGGGAGGCAGTACATTCCTTTCTGCAGAGGTTGGAACAGTAACCCAGAGGTCTGCTTGGAATTATaGGAGATCAAGCTATTCAGG +
Preference number: 5 (lower is better)
Translates to: TQGRQYIPFCRGWNSNPEVCLEL*EIKLFR
Trigger: CCTGAATAGCTTGATCTCCAATAATTCCAAGCAGAC...CTCTGGGTTACTGTTCCAACCTCTGCAGAAAGGAATGTACTGCCTCCCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp TACACAATCTCAGCTTTCAAGAGAATGCCAGATCCTGTTCGGGAATCTCAAAGGAAGCCCATCCTGATATaGAAACGCCTTTTCTGTTCA +
Preference number: 5 (lower is better)
Translates to: YTISAFKRMPDPVRESQRKPILI*KRLFCS
Trigger: TGAACAGAAAAGGCGTTTCAATATCAGGATGGGCTT...CCTTTGAGATTCCCGAACAGGATCTGGCATTCTCTTGAAAGCTGAGATTGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS-3UTR CAA 90 bp TGTTTATCTAAAAAGAAGACATGTCTATCTCCCAGGAAAGCAAAGAGAGAGAGGTGGAGCTTCAGGCCCTaGAAATTTTTCCACTTTGGA +
Preference number: 5 (lower is better)
Translates to: CLSKKKTCLSPRKAKRERWSFRP*KFFHFG
Trigger: TCCAAAGTGGAAAAATTTCAAGGGCCTGAAGCTCCA...CCTCTCTCTCTTTGCTTTCCTGGGAGATAGACATGTCTTCTTTTTAGATAAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS TCA 72 bp TGTCCGAGTCGTCGTCGTCCTCGGGCACCTGAGGCTTaGGCAGCACCGAACGGCCCCGACTGCGGGGCCGGC +
Preference number: 6 (lower is better)
Translates to: CPSRRRPRAPEA*AAPNGPDCGAG
Trigger: GCCGGCCCCGCAGTCGGGGCCGTTCGGTGCTGCTCAAGCCTCAGGTGCCCGAGGACGACGACGACTCGGACA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp TCGTCTGTGTCCGAGTCGTCGTCGTCCTCGGGCACCTaGGGCTTGAGCAGCACCGAACGGCCCCGACTGCGG +
Preference number: 6 (lower is better)
Translates to: SSVSESSSSSGT*GLSSTERPRLR
Trigger: CCGCAGTCGGGGCCGTTCGGTGCTGCTCAAGCCTCAGGTGCCCGAGGACGACGACGACTCGGACACAGACGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS GCA 72 bp CTAGAGCCCGTGGCAGGGACCTGGGGACTACCCCCATaGAGTGAGACCTGCTCGCCCTTCACCAGGGAGTCT +
Preference number: 6 (lower is better)
Translates to: LEPVAGTWGLPP*SETCSPFTRES
Trigger: AGACTCCCTGGTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGGCTCTAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp TTAGGGCAGTCACGACTAGAGCCCGTGGCAGGGACCTaGGGACTACCCCCATGCAGTGAGACCTGCTCGCCC +
Preference number: 6 (lower is better)
Translates to: LGQSRLEPVAGT*GLPPCSETCSP
Trigger: GGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCAGGTCCCTGCCACGGGCTCTAGTCGTGACTGCCCTAA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp AGTCGAGAGACGGGGCTAGGCTGGCTGCTCGTGCTGTaGCTGAGGAACTCCGTGACTCCAGAAGCCCTGGTG +
Preference number: 6 (lower is better)
Translates to: SRETGLGWLLVL*LRNSVTPEALV
Trigger: CACCAGGGCTTCTGGAGTCACGGAGTTCCTCAGCCACAGCACGAGCAGCCAGCCTAGCCCCGTCTCTCGACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS GCA 72 bp GCAGGGACCTGGGGACTACCCCCATGCAGTGAGACCTaGTCGCCCTTCACCAGGGAGTCTTGCACTGTACTT +
Preference number: 6 (lower is better)
Translates to: AGTWGLPPCSET*SPFTRESCTVL
Trigger: AAGTACAGTGCAAGACTCCCTGGTGAAGGGCGAGCAGGTCTCACTGCATGGGGGTAGTCCCCAGGTCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 90 bp CTCAGAGGGACCAAAGTCTGCAGGCTGAATAAACGGGTCCACCGTTaGGGATGTGCGTTCACAACCCTGGCCCTCTGTGGGATCCAGGGA +
Preference number: 6 (lower is better)
Translates to: LRGTKVCRLNKRVHR*GCAFTTLALCGIQG
Trigger: TCCCTGGATCCCACAGAGGGCCAGGGTTGTGAACGCACATCCCAAACGGTGGACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS GCA 72 bp AGCCTCCGGGCCTCCTCTTGCATCTGCATCCGCTCCTaGTGCAGTTTGGTGATGTACTCCATGGTCTTCTGC +
Preference number: 6 (lower is better)
Translates to: SLRASSCICIRS*CSLVMYSMVFC
Trigger: GCAGAAGACCATGGAGTACATCACCAAACTGCAGCAGGAGCGGATGCAGATGCAAGAGGAGGCCCGGAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp GCTATTGGGCAGGCTCGCAGGAGGGAGAGCTGTATTTaGCAAGATGTTCCCCTGAGAAGGTGGGCTGCTAGG +
Preference number: 6 (lower is better)
Translates to: AIGQARRRESCI*QDVPLRRWAAR
Trigger: CCTAGCAGCCCACCTTCTCAGGGGAACATCTTGCCAAATACAGCTCTCCCTCCTGCGAGCCTGCCCAATAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp AGTGCCAAAGCACAGGGGGATGAGGAGGGGGTTGGATaGTGTGCTGTGATAACAAGGCCCTGGTTCTGGCTG +
Preference number: 6 (lower is better)
Translates to: SAKAQGDEEGVG*CAVITRPWFWL
Trigger: CAGCCAGAACCAGGGCCTTGTTATCACAGCACACCATCCAACCCCCTCCTCATCCCCCTGTGCTTTGGCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp GTACTTGGAGAAAAGAGTCGAGAGACGGGGCTAGGCTaGCTGCTCGTGCTGTGGCTGAGGAACTCCGTGACT +
Preference number: 6 (lower is better)
Translates to: VLGEKSRETGLG*LLVLWLRNSVT
Trigger: AGTCACGGAGTTCCTCAGCCACAGCACGAGCAGCCAGCCTAGCCCCGTCTCTCGACTCTTTTCTCCAAGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp CTGCTCGCCCTTCACCAGGGAGTCTTGCACTGTACTTaGAGAAAAGAGTCGAGAGACGGGGCTAGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: LLALHQGVLHCT*RKESRDGARLA
Trigger: AGCCAGCCTAGCCCCGTCTCTCGACTCTTTTCTCCAAGTACAGTGCAAGACTCCCTGGTGAAGGGCGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp GGACTGGGACTTTGTTCTGATGGGCATGGAGAGGCTTaGCCTGAGTTAGGGCAGTCACGACTAGAGCCCGTG +
Preference number: 6 (lower is better)
Translates to: GLGLCSDGHGEA*PELGQSRLEPV
Trigger: CACGGGCTCTAGTCGTGACTGCCCTAACTCAGGCCAAGCCTCTCCATGCCCATCAGAACAAAGTCCCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS GCA 72 bp CCTTCTGCGGTTGGCCTGAGAAGGCAGCTGGAGCAATaGAGGCATTCTTCAACACCAAGGAGACAGGCTCAG +
Preference number: 6 (lower is better)
Translates to: PSAVGLRRQLEQ*RHSSTPRRQAQ
Trigger: CTGAGCCTGTCTCCTTGGTGTTGAAGAATGCCTGCATTGCTCCAGCTGCCTTCTCAGGCCAACCGCAGAAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp TGTGCTATTTCTCGTGGGTTGGGCCAGGCCACGGGTTaGTGTGAAGAGAGTGTGGAGAAGAGAGTGTCGCTG +
Preference number: 6 (lower is better)
Translates to: CAISRGLGQATG*CEESVEKRVSL
Trigger: CAGCGACACTCTCTTCTCCACACTCTCTTCACACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp TGTCTGCGTTTCCCAGATGTGCTATTTCTCGTGGGTTaGGCCAGGCCACGGGTTGGTGTGAAGAGAGTGTGG +
Preference number: 6 (lower is better)
Translates to: CLRFPDVLFLVG*ARPRVGVKRVW
Trigger: CCACACTCTCTTCACACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAGCACATCTGGGAAACGCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp CGTAAAGACAGGGAGGAAGGGCTGTGGGACACTCAGTaGTGGCTCAGAGGGACCAAAGTCTGCAGGCTGAAT +
Preference number: 6 (lower is better)
Translates to: RKDREEGLWDTQ*WLRGTKVCRLN
Trigger: ATTCAGCCTGCAGACTTTGGTCCCTCTGAGCCACCACTGAGTGTCCCACAGCCCTTCCTCCCTGTCTTTACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CAA 72 bp ACCAAAGTCTGCAGGCTGAATAAACGGGTCCACCGTTaGGGATGTGCGTTCACAACCCTGGCCCTCTGTGGG +
Preference number: 6 (lower is better)
Translates to: TKVCRLNKRVHR*GCAFTTLALCG
Trigger: CCCACAGAGGGCCAGGGTTGTGAACGCACATCCCAAACGGTGGACCCGTTTATTCAGCCTGCAGACTTTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp GCAGGAGGGAGAGCTGTATTTGGCAAGATGTTCCCCTaGGAAGGTGGGCTGCTAGGATCTGCGGCAGGTAAT +
Preference number: 6 (lower is better)
Translates to: AGGRAVFGKMFP*EGGLLGSAAGN
Trigger: ATTACCTGCCGCAGATCCTAGCAGCCCACCTTCTCAGGGGAACATCTTGCCAAATACAGCTCTCCCTCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp CTCAGTGGTGGCTCAGAGGGACCAAAGTCTGCAGGCTaGATAAACGGGTCCACCGTTTGGGATGTGCGTTCA +
Preference number: 6 (lower is better)
Translates to: LSGGSEGPKSAG*INGSTVWDVRS
Trigger: TGAACGCACATCCCAAACGGTGGACCCGTTTATTCAGCCTGCAGACTTTGGTCCCTCTGAGCCACCACTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CAA 72 bp ATGTCTGCGTTTCCCAGATGTGCTATTTCTCGTGGGTaGGGCCAGGCCACGGGTTGGTGTGAAGAGAGTGTG +
Preference number: 6 (lower is better)
Translates to: MSAFPRCAISRG*GQATGWCEESV
Trigger: CACACTCTCTTCACACCAACCCGTGGCCTGGCCCAACCCACGAGAAATAGCACATCTGGGAAACGCAGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CAA 72 bp TCAAACATGTCTCTCATGTGGTCAAGCTGGCGGCAGTaGACTGGGACTCCTGTGGCAGGTAGCAGCTGTTGG +
Preference number: 6 (lower is better)
Translates to: SNMSLMWSSWRQ*TGTPVAGSSCW
Trigger: CCAACAGCTGCTACCTGCCACAGGAGTCCCAGTCAACTGCCGCCAGCTTGACCACATGAGAGACATGTTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12
CDS TCA 72 bp TCTTGCCGAAGCTATAGGTCTGGCACGTCTGCTTGTTaGCCGTGTCGAAATCATAGCCCTTCTTGGGCGGGT +
Preference number: 6 (lower is better)
Translates to: SCRSYRSGTSAC*PCRNHSPSWAG
Trigger: ACCCGCCCAAGAAGGGCTATGATTTCGACACGGTCAACAAGCAGACGTGCCAGACCTATAGCTTCGGCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp GAGAAAGGGAAACATTGCTCCCTAGGCAATTCTGGCTaGCCACACCCCCAACCAACTCACCTGGAGCAATGC +
Preference number: 6 (lower is better)
Translates to: EKGKHCSLGNSG*PHPQPTHLEQC
Trigger: GCATTGCTCCAGGTGAGTTGGTTGGGGGTGTGGTCAGCCAGAATTGCCTAGGGAGCAATGTTTCCCTTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS CCA 72 bp CCCTGGTTCTGGCTGAAGGTGGTGGCAGAAGCATCATaGGTAAGGGTTGCAGAGGCTGTGTGGGTAATAACA +
Preference number: 6 (lower is better)
Translates to: PWFWLKVVAEAS*VRVAEAVWVIT
Trigger: TGTTATTACCCACACAGCCTCTGCAACCCTTACCCATGATGCTTCTGCCACCACCTTCAGCCAGAACCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp GTTGGATGGTGTGCTGTGATAACAAGGCCCTGGTTCTaGCTGAAGGTGGTGGCAGAAGCATCATGGGTAAGG +
Preference number: 6 (lower is better)
Translates to: VGWCAVITRPWF*LKVVAEASWVR
Trigger: CCTTACCCATGATGCTTCTGCCACCACCTTCAGCCAGAACCAGGGCCTTGTTATCACAGCACACCATCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp ATTTCCCTGAGCAGTTGTTCTGGGGAGACTGAGGACTaGGACTTTGTTCTGATGGGCATGGAGAGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: ISLSSCSGETED*DFVLMGMERLG
Trigger: GCCAAGCCTCTCCATGCCCATCAGAACAAAGTCCCAGTCCTCAGTCTCCCCAGAACAACTGCTCAGGGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 90 bp TGGGTAAGGGTTGCAGAGGCTGTGTGGGTAATAACAGGGGTGGATTaGCTGACTCCAGCAAACTTCTGTGGCTGCAGGAAAGCTGGTGGA +
Preference number: 6 (lower is better)
Translates to: WVRVAEAVWVITGVD*LTPANFCGCRKAGG
Trigger: TCCACCAGCTTTCCTGCAGCCACAGAAGTTTGCTGGAGTCAGCAAATCCACCCCTGTTATTACCCACACAGCCTCTGCAACCCTTACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp TCTCAATGCGGCTTTTCCAGTACTTGCCCTCTGTGGTaGTGGCCTCTGGCCGACGGTGTTCATCTACATCAA +
Preference number: 6 (lower is better)
Translates to: SQCGFSSTCPLW*WPLADGVHLHQ
Trigger: TTGATGTAGATGAACACCGTCGGCCAGAGGCCATCACCACAGAGGGCAAGTACTGGAAAAGCCGCATTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp AGGAGAAGAGATCCTGGAAAGGCTCAAAGGTGTCCATaGAGTCCAGGTTGGGTTGCAAAGGGATCAGGCCTG +
Preference number: 6 (lower is better)
Translates to: RRRDPGKAQRCP*SPGWVAKGSGL
Trigger: CAGGCCTGATCCCTTTGCAACCCAACCTGGACTTCATGGACACCTTTGAGCCTTTCCAGGATCTCTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp CTAGAATCCCTTCTCTCTTCAGAGGAGCTGATGTCATaGTCACCTTCTGCGGTTGGCCTGAGAAGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: LESLLSSEELMS*SPSAVGLRRQL
Trigger: CAGCTGCCTTCTCAGGCCAACCGCAGAAGGTGATCATGACATCAGCTCCTCTGAAGAGAGAAGGGATTCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp CTTAGAGAAAGGGAAACATTGCTCCCTAGGCAATTCTaGCTGACCACACCCCCAACCAACTCACCTGGAGCA +
Preference number: 6 (lower is better)
Translates to: LRERETLLPRQF*LTTPPTNSPGA
Trigger: TGCTCCAGGTGAGTTGGTTGGGGGTGTGGTCAGCCAGAATTGCCTAGGGAGCAATGTTTCCCTTTCTCTAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111596.8
CDS CAA 90 bp TTGTGGTACTCTCGAATCACAATCTCAATGCGGCTTTTCCAGTACTaGCCCTCTGTGGTGATGGCCTCTGGCCGACGGTGTTCATCTACA +
Preference number: 6 (lower is better)
Translates to: LWYSRITISMRLFQY*PSVVMASGRRCSST
Trigger: TGTAGATGAACACCGTCGGCCAGAGGCCATCACCACAGAGGGCAAGTACTGGAAAAGCCGCATTGAGATTGTGATTCGAGAGTACCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp AAGGAGGAGGCAACATGGAGCCAAAAATGGATCGGCTaGAGGAGAAGAGATCCTGGAAAGGCTCAAAGGTGT +
Preference number: 6 (lower is better)
Translates to: KEEATWSQKWIG*RRRDPGKAQRC
Trigger: ACACCTTTGAGCCTTTCCAGGATCTCTTCTCCTCCAGCCGATCCATTTTTGGCTCCATGTTGCCTCCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CCA 72 bp GATCTGCGGCAGGTAATGATGAAGGAGGAGGCAACATaGAGCCAAAAATGGATCGGCTGGAGGAGAAGAGAT +
Preference number: 6 (lower is better)
Translates to: DLRQVMMKEEAT*SQKWIGWRRRD
Trigger: ATCTCTTCTCCTCCAGCCGATCCATTTTTGGCTCCATGTTGCCTCCTCCTTCATCATTACCTGCCGCAGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS TCA 72 bp GGTGTTCATCTACATCAACAGAGCCATCTAGTGGGGTaGCAAAGTGGCACACAGGATTCTTGCGCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: GVHLHQQSHLVG*QSGTQDSCASP
Trigger: TGGAGAAGCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACTAGATGGCTCTGTTGATGTAGATGAACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS GCA 72 bp TCCTGCTGCAGTTTGGTGATGTACTCCATGGTCTTCTaGAGTGTGATAGCGTGGCTGGTCTGCTTGGAATTA +
Preference number: 6 (lower is better)
Translates to: SCCSLVMYSMVF*SVIAWLVCLEL
Trigger: TAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGAGTACATCACCAAACTGCAGCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 72 bp CCATCTAGTGGGGTGACAAAGTGGCACACAGGATTCTaGCGCTTCTCCAAATACTGCATATACCATGCCCTC +
Preference number: 6 (lower is better)
Translates to: PSSGVTKWHTGF*RFSKYCIYHAL
Trigger: GAGGGCATGGTATATGCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACTAGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS GCA 72 bp TCCATGGTCTTCTGCAGTGTGATAGCGTGGCTGGTCTaGTTGGAATTATTGGAGATCAAGCTATTCAGGGTG +
Preference number: 6 (lower is better)
Translates to: SMVFCSVIAWLV*LELLEIKLFRV
Trigger: CACCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp TCTACATCAACAGAGCCATCTAGTGGGGTGACAAAGTaGCACACAGGATTCTTGCGCTTCTCCAAATACTGC +
Preference number: 6 (lower is better)
Translates to: STSTEPSSGVTK*HTGFLRFSKYC
Trigger: GCAGTATTTGGAGAAGCGCAAGAATCCTGTGTGCCACTTTGTCACCCCACTAGATGGCTCTGTTGATGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000111596.8
CDS CAA 90 bp ATGTACTCCATGGTCTTCTGCAGTGTGATAGCGTGGCTGGTCTGCTaGGAATTATTGGAGATCAAGCTATTCAGGGTGTTAAAGCCCATC +
Preference number: 6 (lower is better)
Translates to: MYSMVFCSVIAWLVC*ELLEIKLFRVLKPI
Trigger: GATGGGCTTTAACACCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGAGTACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CCA 72 bp GTGATGTACTCCATGGTCTTCTGCAGTGTGATAGCGTaGCTGGTCTGCTTGGAATTATTGGAGATCAAGCTA +
Preference number: 6 (lower is better)
Translates to: VMYSMVFCSVIA*LVCLELLEIKL
Trigger: TAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCATGGAGTACATCAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 72 bp ATGTGCTTCTGCCGGTTCTTTAATGCAGCCACATTTTaGGGGTCTGTAGATTTCCCTGAGCAGTTGTTCTGG +
Preference number: 6 (lower is better)
Translates to: MCFCRFFNAATF*GSVDFPEQLFW
Trigger: CCAGAACAACTGCTCAGGGAAATCTACAGACCCCAAAAATGTGGCTGCATTAAAGAACCGGCAGAAGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 90 bp ATGGTCTTCTGCAGTGTGATAGCGTGGCTGGTCTGCTTGGAATTATaGGAGATCAAGCTATTCAGGGTGTTAAAGCCCATCCTGATATTG +
Preference number: 6 (lower is better)
Translates to: MVFCSVIAWLVCLEL*EIKLFRVLKPILIL
Trigger: CAATATCAGGATGGGCTTTAACACCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 72 bp ATGGTCTTCTGCAGTGTGATAGCGTGGCTGGTCTGCTaGGAATTATTGGAGATCAAGCTATTCAGGGTGTTA +
Preference number: 6 (lower is better)
Translates to: MVFCSVIAWLVC*ELLEIKLFRVL
Trigger: TAACACCCTGAATAGCTTGATCTCCAATAATTCCAAGCAGACCAGCCACGCTATCACACTGCAGAAGACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 90 bp TTATTGGAGATCAAGCTATTCAGGGTGTTAAAGCCCATCCTGATATaGAAACGCCTTTTCTGTTCAGCTGAGATGTGCTTCTGCCGGTTC +
Preference number: 6 (lower is better)
Translates to: LLEIKLFRVLKPILI*KRLFCSAEMCFCRF
Trigger: GAACCGGCAGAAGCACATCTCAGCTGAACAGAAAAGGCGTTTCAATATCAGGATGGGCTTTAACACCCTGAATAGCTTGATCTCCAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS CAA 72 bp ATCAAGCTATTCAGGGTGTTAAAGCCCATCCTGATATaGAAACGCCTTTTCTGTTCAGCTGAGATGTGCTTC +
Preference number: 6 (lower is better)
Translates to: IKLFRVLKPILI*KRLFCSAEMCF
Trigger: GAAGCACATCTCAGCTGAACAGAAAAGGCGTTTCAATATCAGGATGGGCTTTAACACCCTGAATAGCTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068237.12
ENSMUST00000135961.2
CDS GCA 72 bp TTGATGATCATGCTGAAAATCCAGAATTTCCAATTCTaGAGGGTCCTGCTTTTCACATATTCATCAAACATG +
Preference number: 6 (lower is better)
Translates to: LMIMLKIQNFQF*RVLLFTYSSNM
Trigger: CATGTTTGATGAATATGTGAAAAGCAGGACCCTGCAGAATTGGAAATTCTGGATTTTCAGCATGATCATCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068237.12