RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MLH3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021245

Ensembl transcript IDs: ENSMUST00000019378.8, ENSMUST00000166821.8, ENSMUST00000220854.2, ENSMUST00000223230.2

Found 466 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTaGTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTC +
Preference number: 1 (lower is better)
Translates to: DVPARSGPPTCPQLH*SCSGCTALPCLLTL
Trigger: GAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
3UTR GCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTaGTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAT +
Preference number: 1 (lower is better)
Translates to: PARSGPPTCPQLHCS*SGCTALPCLLTLQN
Trigger: ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
3UTR GCA 90 bp TCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGATaGACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCCTC +
Preference number: 1 (lower is better)
Translates to: SGPPTCPQLHCSCSG*TALPCLLTLQNPLL
Trigger: GAGGAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR CCA 90 bp TTAAACTTAATAGCCCCATGGCAGGCCTGGGAGGCCAACACCTTCTaGACAGTCAGTGGCAGTGTCCCTTGGATACCTCCTGTGGTCTGG +
Preference number: 1 (lower is better)
Translates to: LNLIAPWQAWEANTF*TVSGSVPWIPPVVW
Trigger: CCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTCCCAGGCCTGCCATGGGGCTATTAAGTTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR CCA 90 bp GCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCCTCATaGAGGCTCACAAGGACGTATAGGCTGCTGCAGGTTCTGCTCTGT +
Preference number: 1 (lower is better)
Translates to: ARHSLVSLHSRILSS*RLTRTYRLLQVLLC
Trigger: ACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGAGGAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR GCA 90 bp CCAGAATCCTCTCCTCATGGAGGCTCACAAGGACGTATAGGCTGCTaGAGGTTCTGCTCTGTTTTTCCAAAGAGATGCCAGGCACGAACC +
Preference number: 1 (lower is better)
Translates to: PESSPHGGSQGRIGC*RFCSVFPKRCQART
Trigger: GGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGAGGAGAGGATTCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR GCA 90 bp ACTCCAGAATCCTCTCCTCATGGAGGCTCACAAGGACGTATAGGCTaGTGCAGGTTCTGCTCTGTTTTTCCAAAGAGATGCCAGGCACGA +
Preference number: 1 (lower is better)
Translates to: TPESSPHGGSQGRIG*CRFCSVFPKRCQAR
Trigger: TCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGAGGAGAGGATTCTGGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR GCA 90 bp TCTCCTCATGGAGGCTCACAAGGACGTATAGGCTGCTGCAGGTTCTaGTCTGTTTTTCCAAAGAGATGCCAGGCACGAACCATTTTGCGA +
Preference number: 1 (lower is better)
Translates to: SPHGGSQGRIGCCRF*SVFPKRCQARTILR
Trigger: TCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGAGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR GCA 90 bp GGACGTATAGGCTGCTGCAGGTTCTGCTCTGTTTTTCCAAAGAGATaGCAGGCACGAACCATTTTGCGAAGTTTAGCAAGGTTGGGTTTA +
Preference number: 1 (lower is better)
Translates to: GRIGCCRFCSVFPKR*QARTILRSLARLGL
Trigger: TAAACCCAACCTTGCTAAACTTCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR TCA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCCTGGGACTAAAGGTGTaGGCCACCGCTGCCTGGCGG +
Preference number: 2 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSLGLKV*ATAAWR
Trigger: CCGCCAGGCAGCGGTGGCTCACACCTTTAGTCCCAG...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATTGAGTGCACGTGCCTaGTCCATCTGCTCAGGGGGA +
Preference number: 2 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGLSARA*SICSGG
Trigger: TCCCCCTGAGCAGATGGAGCAGGCACGTGCACTCAA...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGAAGGCTTGAGTGCACGTaGCTGCTCCATCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGRLECT*LLHLLR
Trigger: CCTGAGCAGATGGAGCAGGCACGTGCACTCAAGCCT...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR CCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCATACCTCCTGTGGTCTaGAGCAGCTCCACTTGTTCT +
Preference number: 2 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSIPPVV*SSSTCS
Trigger: AGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTAT...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR TCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTGCAAAGGGGGATCTCTaGGTTCCAGTTCCAGGACAG +
Preference number: 2 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSAKGDL*VPVPGQ
Trigger: CTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGC...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGGCTTGAGTGCACGTaGCTGCTCCATCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSRLECT*LLHLLR
Trigger: CCTGAGCAGATGGAGCAGGCACGTGCACTCAAGCCT...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR CCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTTCCAGCCTAGGCAAATaGTGCCCTGTCACGGACTTG +
Preference number: 2 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSSSLGK*CPVTDL
Trigger: CAAGTCCGTGACAGGGCACCATTTGCCTAGGCTGGA...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR CAA 90 bp CTGCCCACAGCTGCACTGCTCCTGCTCGGGATGCACGGCACTCCCTaGTCTCCTTACACTCCAGAATCCTCTCCTCATGGAGGCTCACAA +
Preference number: 2 (lower is better)
Translates to: LPTAALLLLGMHGTP*SPYTPESSPHGGSQ
Trigger: TTGTGAGCCTCCATGAGGAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCTGCCCACAGCTGCACTaGTCCTGCTCGGGATGCACG +
Preference number: 2 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTCPQLH*SCSGCT
Trigger: CGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCA...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR TCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTCTGGGACTAAAGGTGTaGGCCACCGCTGCCTGGCGG +
Preference number: 2 (lower is better)
Translates to: QRGISEFQFQDSQVTKRILGLKV*ATAAWR
Trigger: CCGCCAGGCAGCGGTGGCTCACACCTTTAGTCCCAG...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCTGCCCACAGCTGCACTaGTCCTGCTCGGGATGCACG +
Preference number: 2 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVCPQLH*SCSGCT
Trigger: CGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCA...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR CAA 90 bp CCTGTTTTTCCTGCTCCAAGTGGTCCAGGTCAGCTAAGGGCAGCATaGAGGGTCTCCCATGAGCACACTGAAATGGCAGCTGGGACAAGG +
Preference number: 2 (lower is better)
Translates to: PVFPAPSGPGQLRAA*RVSHEHTEMAAGTR
Trigger: CCTTGTCCCAGCTGCCATTTCAGTGTGCTCATGGGAGACCCTCAATGCTGCCCTTAGCTGACCTGGACCACTTGGAGCAGGAAAAACAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR CCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTTCCAGCCTAGGCAAATaGTGCCCTGTCACGGACTTG +
Preference number: 2 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTSSLGK*CPVTDL
Trigger: CAAGTCCGTGACAGGGCACCATTTGCCTAGGCTGGA...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTAAATCCACCTGCCTCTaGCTCCCAAGTACTGGGACT +
Preference number: 2 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTKSTCL*LPSTGT
Trigger: AGTCCCAGTACTTGGGAGGCAGAGGCAGGTGGATTT...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR TCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCAGCAGAGGTATGAAGTaGAGGAGACAAATGCAAAAG +
Preference number: 2 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVSRGMK*RRQMQK
Trigger: CTTTTGCATTTGTCTCCTTCACTTCATACCTCTGCT...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR TCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCAGACCAGGCTGGCCTTaGAATCAGAAATCCACCTGC +
Preference number: 2 (lower is better)
Translates to: YFESRSCYISSLGKWCPVRPGWP*NQKSTC
Trigger: GCAGGTGGATTTCTGATTTCAAGGCCAGCCTGGTCT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCAAATCCACCTGCCTCTaGCTCCCAAGTACTGGGACT +
Preference number: 2 (lower is better)
Translates to: YFESRSCYISSLGKWCPVKSTCL*LPSTGT
Trigger: AGTCCCAGTACTTGGGAGGCAGAGGCAGGTGGATTT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR TCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTAGGACAGAGCTTCGATaGGGCGGCAGCTCTCTTCTA +
Preference number: 2 (lower is better)
Translates to: IYFESRSCYISSLGKWCPRTELR*GGSSLL
Trigger: TAGAAGAGAGCTGCCGCCTCATCGAAGCTCTGTCCT...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR CAA 90 bp AGGTTCTGCTCTGTTTTTCCAAAGAGATGCCAGGCACGAACCATTTaGCGAAGTTTAGCAAGGTTGGGTTTAACCTGTTTTTCCTGCTCC +
Preference number: 2 (lower is better)
Translates to: RFCSVFPKRCQARTI*RSLARLGLTCFSCS
Trigger: GGAGCAGGAAAAACAGGTTAAACCCAACCTTGCTAAACTTCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTTCCTGTGTGCATGGATaGAAAGAAATAAACTACCCT +
Preference number: 2 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTSCVHG*KEINYP
Trigger: AGGGTAGTTTATTTCTTTGCATCCATGCACACAGGA...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR GCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGGCTGCTGCAGGTTCTaGTCTGTTTTTCCAAAGAGA +
Preference number: 2 (lower is better)
Translates to: IYFESRSCYISSLGKWCPGCCRF*SVFPKR
Trigger: TCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCC...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR CCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCAAGCTCCTGTGTGCATaGATGCAAAGAAATAAACTA +
Preference number: 2 (lower is better)
Translates to: YFESRSCYISSLGKWCPVKLLCA*MQRNKL
Trigger: TAGTTTATTTCTTTGCATCCATGCACACAGGAGCTT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR CCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCTATAAACTGAGAGGCTaGGGAAAACTGCTAAAAACA +
Preference number: 2 (lower is better)
Translates to: YFESRSCYISSLGKWCPVYKLRG*GKLLKT
Trigger: TGTTTTTAGCAGTTTTCCCCAGCCTCTCAGTTTATA...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR GCA 72 bp GCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTaGTCCTGCTCGGGATGCACGGCACTCCCTTGTCTC +
Preference number: 3 (lower is better)
Translates to: ARSGPPTCPQLH*SCSGCTALPCL
Trigger: GAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
3UTR GCA 72 bp CCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGATaGACGGCACTCCCTTGTCTCCTTACACTCCAGAAT +
Preference number: 3 (lower is better)
Translates to: PTCPQLHCSCSG*TALPCLLTLQN
Trigger: ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
3UTR-3UTR CAA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGACAGACCAGGCTGGCCTaGAAATCAGAAATCCACCTG +
Preference number: 3 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGQTRLA*KSEIHL
Trigger: CAGGTGGATTTCTGATTTCAAGGCCAGCCTGGTCTG...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR CAA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCCAGCTAAGGGCAGCATaGAGGGTCTCCCATGAGCAC +
Preference number: 3 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSQLRAA*RVSHEH
Trigger: GTGCTCATGGGAGACCCTCAATGCTGCCCTTAGCTG...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR CCA 72 bp ATAGCCCCATGGCAGGCCTGGGAGGCCAACACCTTCTaGACAGTCAGTGGCAGTGTCCCTTGGATACCTCCT +
Preference number: 3 (lower is better)
Translates to: IAPWQAWEANTF*TVSGSVPWIPP
Trigger: AGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTCCCAGGCCTGCCATGGGGCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR CCA 72 bp AGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTaGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGC +
Preference number: 3 (lower is better)
Translates to: RDRVVIFLARQW*RAPLIPALGGS
Trigger: GCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR CCA 72 bp ACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTaGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGC +
Preference number: 3 (lower is better)
Translates to: TRDRVVIFLARQ*WRAPLIPALGG
Trigger: GCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR CCA 72 bp GCAAGGTTGGGTTTAACCTGTTTTTCCTGCTCCAAGTaGTCCAGGTCAGCTAAGGGCAGCATTGAGGGTCTC +
Preference number: 3 (lower is better)
Translates to: ARLGLTCFSCSK*SRSAKGSIEGL
Trigger: GAGACCCTCAATGCTGCCCTTAGCTGACCTGGACCACTTGGAGCAGGAAAAACAGGTTAAACCCAACCTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR CCA 72 bp TCCCTTGTCTCCTTACACTCCAGAATCCTCTCCTCATaGAGGCTCACAAGGACGTATAGGCTGCTGCAGGTT +
Preference number: 3 (lower is better)
Translates to: SLVSLHSRILSS*RLTRTYRLLQV
Trigger: AACCTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGAGGAGAGGATTCTGGAGTGTAAGGAGACAAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR CAA 90 bp CAGGTTCTGCTCTGTTTTTCCAAAGAGATGCCAGGCACGAACCATTTTGCGAAGCAGTGGCAGTGTCCCTaGGATACCTCCTGTGGTCTG +
Preference number: 3 (lower is better)
Translates to: QVLLCFSKEMPGTNHFAKQWQCP*DTSCGL
Trigger: CAGACCACAGGAGGTATCCAAGGGACACTGCCACTG...CTTCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
3UTR-3UTR CAA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCCAGACCAGGCTGGCCTaGAAATCAGAAATCCACCTG +
Preference number: 3 (lower is better)
Translates to: YFESRSCYISSLGKWCPVQTRLA*KSEIHL
Trigger: CAGGTGGATTTCTGATTTCAAGGCCAGCCTGGTCTG...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
3UTR-3UTR CAA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAAAACTACCCTTAGGCTaGAGTGCACGTGCCTGCTCC +
Preference number: 3 (lower is better)
Translates to: INLQKIGIICQAPVCMDAKLPLG*SARACS
Trigger: GGAGCAGGCACGTGCACTCAAGCCTAAGGGTAGTTT...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGGAGGGGTGCATAAGTaGGAGAGCTTCTACCCTCTG +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARGGVHK*ESFYPL
Trigger: CAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCC...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGATCATGGGCAGCATGCTaGTCCACCAGGACTAACAGG +
Preference number: 4 (lower is better)
Translates to: PARSGPPTCPQLHCSCSGSWAAC*STRTNR
Trigger: CCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGA...TCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGGGAGGGGTGCATAAGTaGGAGAGCTTCTACCCTCTG +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQGGVHK*ESFYPL
Trigger: CAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCC...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCAT +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSTEGVH*QQQQQH
Trigger: ATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGT...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCAGCCTGGCCACTGCTaGCATCAACAGCAACCTCTG +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAQPGHC*HQQQPL
Trigger: CAGAGGTTGCTGTTGATGTCAGCAGTGGCCAGGCTG...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGCCATGGGAAGGAGGATaGATCAGGCAAAAGGCGATC +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARPWEGG*IRQKAI
Trigger: GATCGCCTTTTGCCTGATGCATCCTCCTTCCCATGG...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGCTGCTCCAAACGAATaGGTTCATGGGCAGCATGCT +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARAAPNE*VHGQHA
Trigger: AGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGC...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGATCAAAAGGCAGAGGTTaGCACCCCACTTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: PARSGPPTCPQLHCSCSGSKGRG*HPTSGA
Trigger: TGCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGA...TCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGGACAGACTCCACCTTaGCTGCCAATGCCATCCTCT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTGQTPP*LPMPSS
Trigger: AGAGGATGGCATTGGCAGCCAAGGTGGAGTCTGTCC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGGAGGCCAACACCTTCTaGACAGTCAGTGGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQEANTF*TVSGSV
Trigger: GACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTC...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGTGTTGTGCCTCAGCATaGTCCTCTCTTCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARCCASA*SSLPEL
Trigger: GAGCTCAGGAAGAGAGGACCATGCTGAGGCACAACA...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCAT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTATEGVH*QQQQQH
Trigger: ATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGT...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGCTGCATTTCCAGATCTaGCTCTCTCTCCTCAAGGAG +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARLHFQI*LSLLKE
Trigger: CTCCTTGAGGAGAGAGAGGCAGATCTGGAAATGCAG...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCAGACTCCACCTTGGCTaGCAATGCCATCCTCTACCT +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSRLHLG*QCHPLP
Trigger: AGGTAGAGGATGGCATTGGCAGCCAAGGTGGAGTCT...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTGCTCCAAACGAATaGGTTCATGGGCAGCATGCT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTAAPNE*VHGQHA
Trigger: AGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGGGCCCAAGGAGCTTATaGCTAAACCGGAACGCAACT +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQGPRSL*LNRNAT
Trigger: AGTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCC...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGGACAGACTCCACCTTaGCTGCCAATGCCATCCTCT +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAGQTPP*LPMPSS
Trigger: AGAGGATGGCATTGGCAGCCAAGGTGGAGTCTGTCC...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTCATGGGCAGCATGCTaGTCCACCAGGACTAACAGG +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSSWAAC*STRTNR
Trigger: CCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGA...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTTGGATACCTCCTGTaGTCTGGAGCAGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQLGYLL*SGAAPL
Trigger: AAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAG...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCCTTCTGGACAGTCAGTaGCAGTGTCCCTTGGATACC +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCLLDSQ*QCPLDT
Trigger: GGTATCCAAGGGACACTGCCACTGACTGTCCAGAAG...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTAGACTCCACCTTGGCTaGCAATGCCATCCTCTACCT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTARLHLG*QCHPLP
Trigger: AGGTAGAGGATGGCATTGGCAGCCAAGGTGGAGTCT...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCGGCCCAAGGAGCTTATaGCTAAACCGGAACGCAACT +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSGPRSL*LNRNAT
Trigger: AGTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCC...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTGGCCCAAGGAGCTTATaGCTAAACCGGAACGCAACT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAGPRSL*LNRNAT
Trigger: AGTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCC...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGAGTTCTTCAACACACTaGCCCAAGGAGCTTATGGCT +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARSSSTH*PKELMA
Trigger: AGCCATAAGCTCCTTGGGCCAGTGTGTTGAAGAACT...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCGAAGCCATAAAATGCTaGGTTCTCCAAGTCCCGCAC +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSEAIKC*VLQVPH
Trigger: GTGCGGGACTTGGAGAACCCAGCATTTTATGGCTTC...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGTAGTCCCCACACTTaGTCTGGTCAAATCAGCCTC +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCCSPHT*SGQISL
Trigger: GAGGCTGATTTGACCAGACCAAGTGTGGGGACTACA...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGGACAGACTCCACCTTaGCTGCCAATGCCATCCTCT +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPGQTPP*LPMPSS
Trigger: AGAGGATGGCATTGGCAGCCAAGGTGGAGTCTGTCC...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCCCGGCCAGCGCTTTGTaGATCTTGTTTCTCATAGGA +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCPASAL*ILFLIG
Trigger: TCCTATGAGAAACAAGATCCACAAAGCGCTGGCCGG...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTATACCTCCTGTGGTCTaGAGCAGCTCCACTTGTTCT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTIPPVV*SSSTCS
Trigger: AGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTAT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGAGGCCAACACCTTCTaGACAGTCAGTGGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPEANTF*TVSGSV
Trigger: GACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTC...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGAAGAGCTTCTACCCTCTaGCGAACTTTCTCAAACTCT +
Preference number: 4 (lower is better)
Translates to: PARSGPPTCPQLHCSCSGRASTL*RTFSNS
Trigger: AGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCT...TCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTCCATGGGAAGGAGGATaGATCAGGCAAAAGGCGATC +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPPWEGG*IRQKAI
Trigger: GATCGCCTTTTGCCTGATGCATCCTCCTTCCCATGG...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTCACCTTGGCTGCCAATaGCATCCTCTACCTGACTCA +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPHLGCQ*HPLPDS
Trigger: TGAGTCAGGTAGAGGATGGCATTGGCAGCCAAGGTG...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCGGCTGCTGCAGGTTCTaGTCTGTTTTTCCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSGCCRF*SVFPKR
Trigger: TCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCC...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGGACGTATAGGCTGCTaGAGGTTCTGCTCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTGRIGC*RFCSVF
Trigger: AAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTACAGCATTGCTGTTGTaGCTCAGCATGGTCCTCTCT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTATALLL*LSMVLS
Trigger: AGAGAGGACCATGCTGAGGCACAACAGCAATGCTGT...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTAGTTCTTCAACACACTaGCCCAAGGAGCTTATGGCT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTSSSTH*PKELMA
Trigger: AGCCATAAGCTCCTTGGGCCAGTGTGTTGAAGAACT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTAATCAGCCTCATGGGTaGCAAGGGCTTTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTNQPHG*QGLFHS
Trigger: AGAATGGAAAAGCCCTTGCCACCCATGAGGCTGATT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTTCCCCACACTTGGTCTaGTCAAATCAGCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPSPHLV*SNQPHG
Trigger: CCCATGAGGCTGATTTGACCAGACCAAGTGTGGGGA...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGAACATATCTACACCATaGGAAGGAGGATGCATCAGG +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARNISTP*EGGCIR
Trigger: CCTGATGCATCCTCCTTCCCATGGTGTAGATATGTT...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTTTAGATTCATCACCCTaGGGACAGACTCCACCTTGG +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPALDSSP*GQTPPW
Trigger: CCAAGGTGGAGTCTGTCCCCAGGGTGATGAATCTAA...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCTAAGCTCTCAGCCTaGCCACTGCTGACATCAACA +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPAKLSA*PLLTST
Trigger: TGTTGATGTCAGCAGTGGCCAGGCTGAGAGCTTAGC...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTCTTGGATACCTCCTGTaGTCTGGAGCAGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPLGYLL*SGAAPL
Trigger: AAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAG...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGTGTGTTTTTCTTGGATaGAATCTCCACAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQCVFLG*NLHSTS
Trigger: GCTGGTGCTGTGGAGATTTCATCCAAGAAAAACACA...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCAAGGGCACTGCACATTaGTTACATATATCCCGTGGA +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSKGTAH*LHISRG
Trigger: TCCACGGGATATATGTAATCAATGTGCAGTGCCCTT...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGACGGTATCCCAGCTCTaGAACTCAATCAGAGTTTTG +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQTVSQL*NSIRVL
Trigger: CAAAACTCTGATTGAGTTTCAGAGCTGGGATACCGT...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCTTTCCTTCTTCCTCTaGGTACCCCGTACCCTTAAT +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPALSFFL*VPRTLN
Trigger: ATTAAGGGTACGGGGTACTCAGAGGAAGAAGGAAAG...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTATGCCATCCTCTACCTaGCTCATTATCACTTTACCG +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTMPSST*LIITLP
Trigger: CGGTAAAGTGATAATGAGTCAGGTAGAGGATGGCAT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCGAATCATCTCTTTGGTaGAGCGATAGGGATACAGGA +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCESSLW*SDRDTG
Trigger: TCCTGTATCCCTATCGCTTCACCAAAGAGATGATTC...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTGGACGTATAGGCTGCTaGAGGTTCTGCTCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAGRIGC*RFCSVF
Trigger: AAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCC...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCGGACGTATAGGCTGCTaGAGGTTCTGCTCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSGRIGC*RFCSVF
Trigger: AAAAACAGAGCAGAACCTGCAGCAGCCTATACGTCC...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGAAGCCATAAAATGCTaGGTTCTCCAAGTCCCGCAC +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPEAIKC*VLQVPH
Trigger: GTGCGGGACTTGGAGAACCCAGCATTTTATGGCTTC...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGGCAGAGCCATTCTTTaGCCTGCATATAATGCTTTC +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTGRAIL*PAYNAF
Trigger: GAAAGCATTATATGCAGGCCAAAGAATGGCTCTGCC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGAACTCAATCAGAGTTTTaGCTGGCTCTATGCAGACAT +
Preference number: 4 (lower is better)
Translates to: PARSGPPTCPQLHCSCSGTQSEF*LALCRH
Trigger: ATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGT...TCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGACTCAATCAGAGTTTTaGCTGGCTCTATGCAGACAT +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARTQSEF*LALCRH
Trigger: ATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGT...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCCGGAGTGTGATGTTTTaGCTACCTCTTCTTCTGACA +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCRSVMF*LPLLLT
Trigger: TGTCAGAAGAAGAGGTAGCCAAAACATCACACTCCG...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGAGAATCACTAGCATCTaGAAAGAGCAACTCAAGCCC +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQRITSI*KEQLKP
Trigger: GGGCTTGAGTTGCTCTTTCCAGATGCTAGTGATTCT...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGAAAGATCGCTTCTAAATaGATGACACCTGTACTGAGC +
Preference number: 4 (lower is better)
Translates to: PARSGPPTCPQLHCSCSGKIASK*MTPVLS
Trigger: GCTCAGTACAGGTGTCATCCATTTAGAAGCGATCTT...TCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCCATTTGGATGGGGCTTaGAAACATTTTTGGACTGGT +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCHLDGA*KHFWTG
Trigger: ACCAGTCCAAAAATGTTTTCAAGCCCCATCCAAATG...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGTTCACTGTTTTTATTaGTGGGACCATCCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAVHCFY*WDHPLW
Trigger: CCACAGAGGATGGTCCCATCAATAAAAACAGTGAAC...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCGAATCATCTCTTTGGTaGAGCGATAGGGATACAGGA +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSESSLW*SDRDTG
Trigger: TCCTGTATCCCTATCGCTTCACCAAAGAGATGATTC...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGATTCTTATTGTAGTGTaGTTCAGAGCTGATGTAGCC +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARILIVV*FRADVA
Trigger: GGCTACATCAGCTCTGAAGCACACTACAATAAGAAT...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGATGCTTGTTAAATCACTaGTGTCTGGAGTCTCAATTG +
Preference number: 4 (lower is better)
Translates to: PARSGPPTCPQLHCSCSGCLLNH*CLESQL
Trigger: CAATTGAGACTCCAGACAGCAGTGATTTAACAAGCA...TCCCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGAACTTGTTATCCACTTaGTGGAGAACCTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQNLLST*WRTFTE
Trigger: CTCAGTGAAGGTTCTCCAGCAAGTGGATAACAAGTT...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGGTGTTGTGTTTTTCTTaGATGAAATCTCCACAGCAC +
Preference number: 4 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARVLCFS*MKSPQH
Trigger: GTGCTGTGGAGATTTCATCCAAGAAAAACACAACAC...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTATTACATATATCCCGTaGAGTTCTGAGGCAGAACGG +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAITYIP*SSEAER
Trigger: CCGTTCTGCCTCAGAACTCCACGGGATATATGTAAT...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCCGGAGTGTGATGTTTTaGCTACCTCTTCTTCTGACA +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSRSVMF*LPLLLT
Trigger: TGTCAGAAGAAGAGGTAGCCAAAACATCACACTCCG...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCAAAAGGCAGAGGTTaGCACCCCACTTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGSKGRG*HPTSGA
Trigger: TGCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGA...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCGGCAGAATCTGCCATTaGAAGCATATCACTCTCTAT +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCGRICH*KHITLY
Trigger: ATAGAGAGTGATATGCTTCCAATGGCAGATTCTGCC...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGGCAGAATCTGCCATTaGAAGCATATCACTCTCTAT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTGRICH*KHITLY
Trigger: ATAGAGAGTGATATGCTTCCAATGGCAGATTCTGCC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTAGAATCACTAGCATCTaGAAAGAGCAACTCAAGCCC +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPARITSI*KEQLKP
Trigger: GGGCTTGAGTTGCTCTTTCCAGATGCTAGTGATTCT...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGACTTGGATACCTCCTGTaGTCTGGAGCAGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGLGYLL*SGAAPL
Trigger: AAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAG...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTTTTCCATATTCACTCTaGTGGCCACACATGTTGCTT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAFPYSL*WPHMLL
Trigger: AAGCAACATGTGTGGCCATCAGAGTGAATATGGAAA...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCCATTGTCTATCACTTaGACTTGGAAGGTTTCCATA +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQPLSIT*TWKVSI
Trigger: TATGGAAACCTTCCAAGTTCAAGTGATAGACAATGG...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTAAGGGCACTGCACATTaGTTACATATATCCCGTGGA +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPKGTAH*LHISRG
Trigger: TCCACGGGATATATGTAATCAATGTGCAGTGCCCTT...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCATTTGGATGGGGCTTaGAAACATTTTTGGACTGGT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAHLDGA*KHFWTG
Trigger: ACCAGTCCAAAAATGTTTTCAAGCCCCATCCAAATG...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCATTTGGATGGGGCTTaGAAACATTTTTGGACTGGT +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAHLDGA*KHFWTG
Trigger: ACCAGTCCAAAAATGTTTTCAAGCCCCATCCAAATG...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTTCTTTACAGCTTTCCTaGAAAAGAGCCAAGTTGTCA +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTSLQLS*KRAKLS
Trigger: TGACAACTTGGCTCTTTTTCAGGAAAGCTGTAAAGA...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTATGCCATCCTCTACCTaGCTCATTATCACTTTACCG +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPMPSST*LIITLP
Trigger: CGGTAAAGTGATAATGAGTCAGGTAGAGGATGGCAT...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCGATGGCCACACATGTTaGTTCAGCATCAATACTGTT +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSDGHTC*FSINTV
Trigger: AACAGTATTGATGCTGAAGCAACATGTGTGGCCATC...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTAGAGCTTCTACCCTCTaGCGAACTTTCTCAAACTCT +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPRASTL*RTFSNS
Trigger: AGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCT...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGTACTACTTATTGTCTaGATTTCCAGATCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTVLLIV*ISRSAS
Trigger: AGAGGCAGATCTGGAAATGCAGACAATAAGTAGTAC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGGTACTACTTATTGTCTaGATTTCCAGATCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQVLLIV*ISRSAS
Trigger: AGAGGCAGATCTGGAAATGCAGACAATAAGTAGTAC...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGCTTGTTAAATCACTaGTGTCTGGAGTCTCAATTG +
Preference number: 4 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCCLLNH*CLESQL
Trigger: CAATTGAGACTCCAGACAGCAGTGATTTAACAAGCA...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTAACCTGTATTTGTTCTaGAAAACCTTTTGTTGGGCG +
Preference number: 4 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTNLYLF*KTFCWA
Trigger: CGCCCAACAAAAGGTTTTGCAGAACAAATACAGGTT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGGTGTTGTGTTTTTCTTaGATGAAATCTCCACAGCAC +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQVLCFS*MKSPQH
Trigger: GTGCTGTGGAGATTTCATCCAAGAAAAACACAACAC...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCAATCAGAGTTTTGGCTaGCTCTATGCAGACATCATA +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSNQSFG*LYADII
Trigger: TATGATGTCTGCATAGAGCCAGCCAAAACTCTGATT...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTTGTTGGGCGGTTGACTaGATTCTTTACTTAAAGTGC +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPACWAVD*ILYLKC
Trigger: GCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACA...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGTTTTCTGATAGTTTCTaGATCACCAGGGTTTTGTCT +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQFSDSF*ITRVLS
Trigger: AGACAAAACCCTGGTGATTCAGAAACTATCAGAAAA...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCAGCCTGGCCACTGCTaGCATCAACAGCAACCTCTG +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNQPGHC*HQQQPL
Trigger: CAGAGGTTGCTGTTGATGTCAGCAGTGGCCAGGCTG...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAAGGACAGAGCTTCGATaGGGCGGCAGCTCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPERTELR*GGSSLL
Trigger: TAGAAGAGAGCTGCCGCCTCATCGAAGCTCTGTCCT...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTTAACTTTTGGGACTTaGCCAATCCGTAAATTTGAC +
Preference number: 4 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSLTFGT*PIRKFD
Trigger: GTCAAATTTACGGATTGGGCAAGTCCCAAAAGTTAA...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCAAGTTGTCATCTGTTaGTACAGGTTTGTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAQVVIC*YRFVLC
Trigger: ACAGAGAACAAACCTGTAGCAACAGATGACAACTTG...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGCCATGGGAAGGAGGATaGATCAGGCAAAAGGCGATC +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARPWEGG*IRQKAI
Trigger: GATCGCCTTTTGCCTGATGCATCCTCCTTCCCATGG...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTTGTAGTCCCCACACTTaGTCTGGTCAAATCAGCCTC +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSCSPHT*SGQISL
Trigger: GAGGCTGATTTGACCAGACCAAGTGTGGGGACTACA...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCAATCAGAGTTTTGGCTaGCTCTATGCAGACATCATA +
Preference number: 4 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSNQSFG*LYADII
Trigger: TATGATGTCTGCATAGAGCCAGCCAAAACTCTGATT...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGTCAGACATATCTAAGTaGCTCTTGTCTTTCAGAAGA +
Preference number: 4 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQSDISK*LLSFRR
Trigger: TCTTCTGAAAGACAAGAGCCACTTAGATATGTCTGA...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCATGGGCAGCATGCTaGTCCACCAGGACTAACAGG +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILSWAAC*STRTNR
Trigger: CCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGA...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCCGGCCAGCGCTTTGTaGATCTTGTTTCTCATAGGA +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSPASAL*ILFLIG
Trigger: TCCTATGAGAAACAAGATCCACAAAGCGCTGGCCGG...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTATACCTCCTGTGGTCTaGAGCAGCTCCACTTGTTCT +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSIPPVV*SSSTCS
Trigger: AGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTAT...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
3UTR CAA 72 bp GGCCAACACCTTCTGGACAGTCAGTGGCAGTGTCCCTaGGATACCTCCTGTGGTCTGGAGCAGCTCCACTTG +
Preference number: 4 (lower is better)
Translates to: GQHLLDSQWQCP*DTSCGLEQLHL
Trigger: CAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCTTTTTACTCCTTCCTaGATACAAATCAACACGGTA +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTALFTPS*IQINTV
Trigger: TACCGTGTTGATTTGTATTCAGGAAGGAGTAAAAAG...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTTTCCTTCTTCCTCTaGGTACCCCGTACCCTTAAT +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSLSFFL*VPRTLN
Trigger: ATTAAGGGTACGGGGTACTCAGAGGAAGAAGGAAAG...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTTCTTTACAGCTTTCCTaGAAAAGAGCCAAGTTGTCA +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPSLQLS*KRAKLS
Trigger: TGACAACTTGGCTCTTTTTCAGGAAAGCTGTAAAGA...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGACTGGAGAACCTTCACTaGGTGAATCATCTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGLENLH*VNHLFG
Trigger: ACCAAAGAGATGATTCACTCAGTGAAGGTTCTCCAG...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTCGGAAGCCATAAAATaGTGGGTTCTCCAAGTCCCG +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARSEAIK*WVLQVP
Trigger: CGGGACTTGGAGAACCCAGCATTTTATGGCTTCCGA...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCGCTGCTCCAAACGAATaGGTTCATGGGCAGCATGCT +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILAAPNE*VHGQHA
Trigger: AGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGC...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAACAGCATCCACAGCATTaGTGTTGTGCCTCAGCATGG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEQHPQH*CCASAW
Trigger: CCATGCTGAGGCACAACAGCAATGCTGTGGATGCTG...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTGTAGTCCCCACACTTaGTCTGGTCAAATCAGCCTC +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARCSPHT*SGQISL
Trigger: GAGGCTGATTTGACCAGACCAAGTGTGGGGACTACA...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCAAAAGGCAGAGGTTaGCACCCCACTTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILSKGRG*HPTSGA
Trigger: TGCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGA...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTTCAGACATATCTAAGTaGCTCTTGTCTTTCAGAAGA +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTASDISK*LLSFRR
Trigger: TCTTCTGAAAGACAAGAGCCACTTAGATATGTCTGA...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCATACAGTGTGCGTTTaGTTCATTTTTGGAACAAGA +
Preference number: 4 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAHTVCV*FIFGTR
Trigger: TCTTGTTCCAAAAATGAACCAAACGCACACTGTATG...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCCCGGCCAGCGCTTTGTaGATCTTGTTTCTCATAGGA +
Preference number: 4 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSPASAL*ILFLIG
Trigger: TCCTATGAGAAACAAGATCCACAAAGCGCTGGCCGG...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTGTGGAGGGATTATTGTaGAAGACAATAATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAVEGLL*KTIISS
Trigger: GGAAGAAATTATTGTCTTCCACAATAATCCCTCCAC...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAACGGTGTCGAGGACTTaGATTCATTTGCCTACTGGC +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPETVSRT*IHLPTG
Trigger: GCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGT...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTACGGTATCCCAGCTCTaGAACTCAATCAGAGTTTTG +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSTVSQL*NSIRVL
Trigger: CAAAACTCTGATTGAGTTTCAGAGCTGGGATACCGT...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTTCACAGAAAGGGCACTaGACATTGATTACATATATC +
Preference number: 4 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPSQKGH*TLITYI
Trigger: GATATATGTAATCAATGTGCAGTGCCCTTTCTGTGA...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCACCTTGGCTGCCAATaGCATCCTCTACCTGACTCA +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNHLGCQ*HPLPDS
Trigger: TGAGTCAGGTAGAGGATGGCATTGGCAGCCAAGGTG...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTACATCAAAATGCTGCTaGCAATCCATACAGTGTGCG +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSTSKCC*QSIQCA
Trigger: CGCACACTGTATGGATTGGCAGCAGCATTTTGATGT...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTAACATATCTACACCATaGGAAGGAGGATGCATCAGG +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSNISTP*EGGCIR
Trigger: CCTGATGCATCCTCCTTCCCATGGTGTAGATATGTT...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATTAGATTCATCACCCTaGGGACAGACTCCACCTTGG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPELDSSP*GQTPPW
Trigger: CCAAGGTGGAGTCTGTCCCCAGGGTGATGAATCTAA...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCGCTAAGCTCTCAGCCTaGCCACTGCTGACATCAACA +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLAKLSA*PLLTST
Trigger: TGTTGATGTCAGCAGTGGCCAGGCTGAGAGCTTAGC...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTTTTCCATATTCACTCTaGTGGCCACACATGTTGCTT +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSFPYSL*WPHMLL
Trigger: AAGCAACATGTGTGGCCATCAGAGTGAATATGGAAA...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATACGGTGTCGAGGACTTaGATTCATTTGCCTACTGGC +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNTVSRT*IHLPTG
Trigger: GCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGT...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCGGACTTTCTCTCAAATaGGGCATCTGTTCTAAGCGA +
Preference number: 4 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSGLSLK*GICSKR
Trigger: TCGCTTAGAACAGATGCCTCATTTGAGAGAAAGTCC...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGGTTCACTGTTTTTATTaGTGGGACCATCCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARVHCFY*WDHPLW
Trigger: CCACAGAGGATGGTCCCATCAATAAAAACAGTGAAC...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATTCGGAAGCCATAAAATaGTGGGTTCTCCAAGTCCCG +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNSEAIK*WVLQVP
Trigger: CGGGACTTGGAGAACCCAGCATTTTATGGCTTCCGA...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAGGCTGCTGCAGGTTCTaGTCTGTTTTTCCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEGCCRF*SVFPKR
Trigger: TCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCC...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCAAGGACGTATAGGCTaGTGCAGGTTCTGCTCTGTT +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNQGRIG*CRFCSV
Trigger: AACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTG...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAGGAGCTGAAGAACCATaGATCCAGATACATCGTTCC +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEGAEEP*IQIHRS
Trigger: GGAACGATGTATCTGGATCCATGGTTCTTCAGCTCC...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATGTGTTTTTCTTGGATaGAATCTCCACAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPECVFLG*NLHSTS
Trigger: GCTGGTGCTGTGGAGATTTCATCCAAGAAAAACACA...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATTGGTTTTAGGGAGCTaGAGAACCATGGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPELVLGS*RTMDPD
Trigger: ATCTGGATCCATGGTTCTTCAGCTCCCTAAAACCAA...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAATTTTCTCCGGAGTGTaGTGTTTTGGCTACCTCTTC +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEIFSGV*CFGYLF
Trigger: GAAGAGGTAGCCAAAACATCACACTCCGGAGAAAAT...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCCTTTCCTTCTTCCTCTaGGTACCCCGTACCCTTAAT +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLLSFFL*VPRTLN
Trigger: ATTAAGGGTACGGGGTACTCAGAGGAAGAAGGAAAG...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCAT +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVTEGVH*QQQQQH
Trigger: ATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGT...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp GCTGCTGCAGGTTCTGCTCTGTTTTTCCAAAGAGATGCCAGGCACGAACCATTTCAGCCTGGCCACTGCTaGCATCAACAGCAACCTCTG +
Preference number: 4 (lower is better)
Translates to: AAAGSALFFQRDARHEPFQPGHC*HQQQPL
Trigger: CAGAGGTTGCTGTTGATGTCAGCAGTGGCCAGGCTG...AAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp AGGCAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCACAGAAAGGGCACTaGACATTGATTACATATATC +
Preference number: 4 (lower is better)
Translates to: RQWWRAPLIPALGGSKGGSQKGH*TLITYI
Trigger: GATATATGTAATCAATGTGCAGTGCCCTTTCTGTGA...TCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCAAGTTGTCATCTGTTaGTACAGGTTTGTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSQVVIC*YRFVLC
Trigger: ACAGAGAACAAACCTGTAGCAACAGATGACAACTTG...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCCACCTTGGCTGCCAATaGCATCCTCTACCTGACTCA +
Preference number: 4 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTHLGCQ*HPLPDS
Trigger: TGAGTCAGGTAGAGGATGGCATTGGCAGCCAAGGTG...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAACATCAAAATGCTGCTaGCAATCCATACAGTGTGCG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPETSKCC*QSIQCA
Trigger: CGCACACTGTATGGATTGGCAGCAGCATTTTGATGT...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGAACTTGTTATCCACTTaGTGGAGAACCTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARNLLST*WRTFTE
Trigger: CTCAGTGAAGGTTCTCCAGCAAGTGGATAACAAGTT...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTTAACCTGTTTTTCCTaGTCCAAGTGGTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILLTCFS*SKWSRS
Trigger: TGACCTGGACCACTTGGAGCAGGAAAAACAGGTTAA...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCGGCAGAGCCATTCTTTaGCCTGCATATAATGCTTTC +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILGRAIL*PAYNAF
Trigger: GAAAGCATTATATGCAGGCCAAAGAATGGCTCTGCC...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCATTACATATATCCCGTaGAGTTCTGAGGCAGAACGG +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILITYIP*SSEAER
Trigger: CCGTTCTGCCTCAGAACTCCACGGGATATATGTAAT...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCCTCTTCCACGACTACTaGGCTCCTTTTTCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILLFHDY*APFSFF
Trigger: AAAGAAGGAAAAAGGAGCCCAGTAGTCGTGGAAGAG...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAAACATATCTACACCATaGGAAGGAGGATGCATCAGG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPENISTP*EGGCIR
Trigger: CCTGATGCATCCTCCTTCCCATGGTGTAGATATGTT...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCCAGCAAAGGAGTTTCTaGTTTCTCTGTGTCATCCGT +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILQQRSF*FLCVIR
Trigger: ACGGATGACACAGAGAAACCAGAAACTCCTTTGCTG...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCTTGGTTTTAGGGAGCTaGAGAACCATGGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLLVLGS*RTMDPD
Trigger: ATCTGGATCCATGGTTCTTCAGCTCCCTAAAACCAA...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATACGGTATCCCAGCTCTaGAACTCAATCAGAGTTTTG +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNTVSQL*NSIRVL
Trigger: CAAAACTCTGATTGAGTTTCAGAGCTGGGATACCGT...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCTCACTTTGTACTACATaGGTTATAAAGCCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSSLCTT*VIKPVE
Trigger: CTCCACTGGCTTTATAACTCATGTAGTACAAAGTGA...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGCTTTTGTTGGGCGGTTaGCTGGATTCTTTACTTAAA +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARLLLGG*LDSLLK
Trigger: TTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAG...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCAAGGCGATCTGTGTGTaGTTCTTTACAGCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLKAICV*FFTAFL
Trigger: CAGGAAAGCTGTAAAGAATCACACACAGATCGCCTT...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATGGACTTTCTCTCAAATaGGGCATCTGTTCTAAGCGA +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNGLSLK*GICSKR
Trigger: TCGCTTAGAACAGATGCCTCATTTGAGAGAAAGTCC...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCCTGGAGAACCTTCACTaGGTGAATCATCTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLLENLH*VNHLFG
Trigger: ACCAAAGAGATGATTCACTCAGTGAAGGTTCTCCAG...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTAGGACAGAGCTTCGATaGGGCGGCAGCTCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRIRTELR*GGSSLL
Trigger: TAGAAGAGAGCTGCCGCCTCATCGAAGCTCTGTCCT...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCAACTTGTTATCCACTTaGTGGAGAACCTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: APARDARHSLVSLHSRILNLLST*WRTFTE
Trigger: CTCAGTGAAGGTTCTCCAGCAAGTGGATAACAAGTT...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAAACTTGTTATCCACTTaGTGGAGAACCTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPENLLST*WRTFTE
Trigger: CTCAGTGAAGGTTCTCCAGCAAGTGGATAACAAGTT...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCTTAACCTGTTTTTCCTaGTCCAAGTGGTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLLTCFS*SKWSRS
Trigger: TGACCTGGACCACTTGGAGCAGGAAAAACAGGTTAA...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCTCCCCACACTTGGTCTaGTCAAATCAGCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVSPHLV*SNQPHG
Trigger: CCCATGAGGCTGATTTGACCAGACCAAGTGTGGGGA...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGGGTGATGCATTTGGATaGGGCTTGAAAACATTTTTG +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARGDAFG*GLKTFL
Trigger: CAAAAATGTTTTCAAGCCCCATCCAAATGCATCACC...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCCAGCAAAGGAGTTTCTaGTTTCTCTGTGTCATCCGT +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLQQRSF*FLCVIR
Trigger: ACGGATGACACAGAGAAACCAGAAACTCCTTTGCTG...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCCTTCTGGACAGTCAGTaGCAGTGTCCCTTGGATACC +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVLLDSQ*QCPLDT
Trigger: GGTATCCAAGGGACACTGCCACTGACTGTCCAGAAG...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGGGAGGGGTGCATAAGTaGGAGAGCTTCTACCCTCTG +
Preference number: 4 (lower is better)
Translates to: FESRSCYISSLGKWCPVTGGVHK*ESFYPL
Trigger: CAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCC...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp GCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTTTCTGATAGTTTCTaGATCACCAGGGTTTTGTCT +
Preference number: 4 (lower is better)
Translates to: ALGGSKGGSLSSSSRTARFSDSF*ITRVLS
Trigger: AGACAAAACCCTGGTGATTCAGAAACTATCAGAAAA...CCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCACTTTGTACTACATaGGTTATAAAGCCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPESLCTT*VIKPVE
Trigger: CTCCACTGGCTTTATAACTCATGTAGTACAAAGTGA...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTCAGCCTGGCCACTGCTaGCATCAACAGCAACCTCTG +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARQPGHC*HQQQPL
Trigger: CAGAGGTTGCTGTTGATGTCAGCAGTGGCCAGGCTG...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATGATGGCCACACATGTTaGTTCAGCATCAATACTGTT +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNDGHTC*FSINTV
Trigger: AACAGTATTGATGCTGAAGCAACATGTGTGGCCATC...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCACTCAATCAGAGTTTTaGCTGGCTCTATGCAGACAT +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLTQSEF*LALCRH
Trigger: ATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGT...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAGGTGATGCATTTGGATaGGGCTTGAAAACATTTTTG +
Preference number: 4 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEGDAFG*GLKTFL
Trigger: CAAAAATGTTTTCAAGCCCCATCCAAATGCATCACC...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCATTGTCTATCACTTaGACTTGGAAGGTTTCCATA +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNPLSIT*TWKVSI
Trigger: TATGGAAACCTTCCAAGTTCAAGTGATAGACAATGG...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCTCTTTACAGCTTTCCTaGAAAAGAGCCAAGTTGTCA +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLSLQLS*KRAKLS
Trigger: TGACAACTTGGCTCTTTTTCAGGAAAGCTGTAAAGA...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCAT +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARTEGVH*QQQQQH
Trigger: ATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTAGGACAGAGCTTCGATaGGGCGGCAGCTCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARRTELR*GGSSLL
Trigger: TAGAAGAGAGCTGCCGCCTCATCGAAGCTCTGTCCT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATATTCTTATTGTAGTGTaGTTCAGAGCTGATGTAGCC +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNILIVV*FRADVA
Trigger: GGCTACATCAGCTCTGAAGCACACTACAATAAGAAT...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCCCAATCCATACAGTGTaGGTTTGGTTCATTTTTGGA +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLPIHTV*VWFIFG
Trigger: TCCAAAAATGAACCAAACGCACACTGTATGGATTGG...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTGCTGCTCCAAACGAATaGGTTCATGGGCAGCATGCT +
Preference number: 4 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTAAPNE*VHGQHA
Trigger: AGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGC...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTCAAGGACGTATAGGCTaGTGCAGGTTCTGCTCTGTT +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRIQGRIG*CRFCSV
Trigger: AACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTG...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTGAGGCCAACACCTTCTaGACAGTCAGTGGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSAREANTF*TVSGSV
Trigger: GACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTC...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCTGTGTTTTTCTTGGATaGAATCTCCACAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVCVFLG*NLHSTS
Trigger: GCTGGTGCTGTGGAGATTTCATCCAAGAAAAACACA...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCAGAGCTTCTACCCTCTaGCGAACTTTCTCAAACTCT +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVRASTL*RTFSNS
Trigger: AGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCT...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATTTAACTTTTGGGACTTaGCCAATCCGTAAATTTGAC +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNLTFGT*PIRKFD
Trigger: GTCAAATTTACGGATTGGGCAAGTCCCAAAAGTTAA...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCTCACAGAAAGGGCACTaGACATTGATTACATATATC +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLSQKGH*TLITYI
Trigger: GATATATGTAATCAATGTGCAGTGCCCTTTCTGTGA...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTAGACTCCACCTTGGCTaGCAATGCCATCCTCTACCT +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARRLHLG*QCHPLP
Trigger: AGGTAGAGGATGGCATTGGCAGCCAAGGTGGAGTCT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCGGCTGCTGCAGGTTCTaGTCTGTTTTTCCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPGCCRF*SVFPKR
Trigger: TCTCTTTGGAAAAACAGAGCAGAACCTGCAGCAGCC...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGCAAGGACGTATAGGCTaGTGCAGGTTCTGCTCTGTT +
Preference number: 4 (lower is better)
Translates to: FESRSCYISSLGKWCPVTQGRIG*CRFCSV
Trigger: AACAGAGCAGAACCTGCAGCAGCCTATACGTCCTTG...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTGAAGCCATAAAATGCTaGGTTCTCCAAGTCCCGCAC +
Preference number: 4 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTEAIKC*VLQVPH
Trigger: GTGCGGGACTTGGAGAACCCAGCATTTTATGGCTTC...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCCTCTTCCACGACTACTaGGCTCCTTTTTCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVLFHDY*APFSFF
Trigger: AAAGAAGGAAAAAGGAGCCCAGTAGTCGTGGAAGAG...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTGCTAAGCTCTCAGCCTaGCCACTGCTGACATCAACA +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARAKLSA*PLLTST
Trigger: TGTTGATGTCAGCAGTGGCCAGGCTGAGAGCTTAGC...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCGTGGAGGGATTATTGTaGAAGACAATAATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLVEGLL*KTIISS
Trigger: GGAAGAAATTATTGTCTTCCACAATAATCCCTCCAC...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATGTGGAGGGATTATTGTaGAAGACAATAATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNVEGLL*KTIISS
Trigger: GGAAGAAATTATTGTCTTCCACAATAATCCCTCCAC...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCATTTTCTCCGGAGTGTaGTGTTTTGGCTACCTCTTC +
Preference number: 4 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPIFSGV*CFGYLF
Trigger: GAAGAGGTAGCCAAAACATCACACTCCGGAGAAAAT...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTAAGGCGATCTGTGTGTaGTTCTTTACAGCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRIKAICV*FFTAFL
Trigger: CAGGAAAGCTGTAAAGAATCACACACAGATCGCCTT...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCTGCTTGTTAAATCACTaGTGTCTGGAGTCTCAATTG +
Preference number: 4 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTCLLNH*CLESQL
Trigger: CAATTGAGACTCCAGACAGCAGTGATTTAACAAGCA...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCACATCAAAATGCTGCTaGCAATCCATACAGTGTGCG +
Preference number: 4 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPTSKCC*QSIQCA
Trigger: CGCACACTGTATGGATTGGCAGCAGCATTTTGATGT...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTTTAACCTGTTTTTCCTaGTCCAAGTGGTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRILTCFS*SKWSRS
Trigger: TGACCTGGACCACTTGGAGCAGGAAAAACAGGTTAA...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCGTGTTGTGTTTTTCTTaGATGAAATCTCCACAGCAC +
Preference number: 4 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTVLCFS*MKSPQH
Trigger: GTGCTGTGGAGATTTCATCCAAGAAAAACACAACAC...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGAATCAGCCTCATGGGTaGCAAGGGCTTTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: FESRSCYISSLGKWCPVTNQPHG*QGLFHS
Trigger: AGAATGGAAAAGCCCTTGCCACCCATGAGGCTGATT...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCTTTCCAAATGTTTCTTaGGCACTTACAGGACCAGGT +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVFPNVS*ALTGPG
Trigger: ACCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAA...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ACACCTTCTGGACAGTCAGTGGCAGTGTCCCTTGGATACCTCCTGTGGTCTGGAGTGGAGGGATTATTGTaGAAGACAATAATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: TPSGQSVAVSLGYLLWSGVEGLL*KTIISS
Trigger: GGAAGAAATTATTGTCTTCCACAATAATCCCTCCAC...TCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGGTGTCGAGGACTTaGATTCATTTGCCTACTGGC +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVTVSRT*IHLPTG
Trigger: GCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTAAGGCGATCTGTGTGTaGTTCTTTACAGCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTKAICV*FFTAFL
Trigger: CAGGAAAGCTGTAAAGAATCACACACAGATCGCCTT...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGGGACTTTCTCTCAAATaGGGCATCTGTTCTAAGCGA +
Preference number: 4 (lower is better)
Translates to: FESRSCYISSLGKWCPVTGLSLK*GICSKR
Trigger: TCGCTTAGAACAGATGCCTCATTTGAGAGAAAGTCC...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCCTGCATTTCCAGATCTaGCTCTCTCTCCTCAAGGAG +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVLHFQI*LSLLKE
Trigger: CTCCTTGAGGAGAGAGAGGCAGATCTGGAAATGCAG...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCGTACTACTTATTGTCTaGATTTCCAGATCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVVLLIV*ISRSAS
Trigger: AGAGGCAGATCTGGAAATGCAGACAATAAGTAGTAC...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTGGCAGAGCCATTCTTTaGCCTGCATATAATGCTTTC +
Preference number: 4 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTGRAIL*PAYNAF
Trigger: GAAAGCATTATATGCAGGCCAAAGAATGGCTCTGCC...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTTTTCCAAATGTTTCTTaGGCACTTACAGGACCAGGT +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRIFPNVS*ALTGPG
Trigger: ACCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAA...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCGGCAGAATCTGCCATTaGAAGCATATCACTCTCTAT +
Preference number: 4 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPGRICH*KHITLY
Trigger: ATAGAGAGTGATATGCTTCCAATGGCAGATTCTGCC...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGCAGCAAAGGAGTTTCTaGTTTCTCTGTGTCATCCGT +
Preference number: 4 (lower is better)
Translates to: FESRSCYISSLGKWCPVTQQRSF*FLCVIR
Trigger: ACGGATGACACAGAGAAACCAGAAACTCCTTTGCTG...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCCTTTTTACTCCTTCCTaGATACAAATCAACACGGTA +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVLFTPS*IQINTV
Trigger: TACCGTGTTGATTTGTATTCAGGAAGGAGTAAAAAG...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCTTTTCTGATAGTTTCTaGATCACCAGGGTTTTGTCT +
Preference number: 4 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVFSDSF*ITRVLS
Trigger: AGACAAAACCCTGGTGATTCAGAAACTATCAGAAAA...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCCTTTTGTTGGGCGGTTaGCTGGATTCTTTACTTAAA +
Preference number: 4 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPLLLGG*LDSLLK
Trigger: TTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAG...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTGTTCACTGTTTTTATTaGTGGGACCATCCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARVHCFY*WDHPLW
Trigger: CCACAGAGGATGGTCCCATCAATAAAAACAGTGAAC...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCATTCTTATTGTAGTGTaGTTCAGAGCTGATGTAGCC +
Preference number: 4 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPILIVV*FRADVA
Trigger: GGCTACATCAGCTCTGAAGCACACTACAATAAGAAT...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCAATCAGCCTCATGGGTaGCAAGGGCTTTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVNQPHG*QGLFHS
Trigger: AGAATGGAAAAGCCCTTGCCACCCATGAGGCTGATT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCGGAGCTGAAGAACCATaGATCCAGATACATCGTTCC +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVGAEEP*IQIHRS
Trigger: GGAACGATGTATCTGGATCCATGGTTCTTCAGCTCC...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTGGTGATGCATTTGGATaGGGCTTGAAAACATTTTTG +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRIGDAFG*GLKTFL
Trigger: CAAAAATGTTTTCAAGCCCCATCCAAATGCATCACC...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTAGAATCACTAGCATCTaGAAAGAGCAACTCAAGCCC +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARRITSI*KEQLKP
Trigger: GGGCTTGAGTTGCTCTTTCCAGATGCTAGTGATTCT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCCTGGAGAACCTTCACTaGGTGAATCATCTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVLENLH*VNHLFG
Trigger: ACCAAAGAGATGATTCACTCAGTGAAGGTTCTCCAG...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp TGCCAGGCACGAACCATTTTGCGAAGTTTAGCAAGGTTGGGTTTAACCTGTTTTCTGGAGAACCTTCACTaGGTGAATCATCTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: CQARTILRSLARLGLTCFLENLH*VNHLFG
Trigger: ACCAAAGAGATGATTCACTCAGTGAAGGTTCTCCAG...AAAACAGGTTAAACCCAACCTTGCTAAACTTCGCAAAATGGTTCGTGCCTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTGATGGCCACACATGTTaGTTCAGCATCAATACTGTT +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARDGHTC*FSINTV
Trigger: AACAGTATTGATGCTGAAGCAACATGTGTGGCCATC...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTCAAGTTGTCATCTGTTaGTACAGGTTTGTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTQVVIC*YRFVLC
Trigger: ACAGAGAACAAACCTGTAGCAACAGATGACAACTTG...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTTTTCCAAATGTTTCTTaGGCACTTACAGGACCAGGT +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARFPNVS*ALTGPG
Trigger: ACCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAA...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTTCAGACATATCTAAGTaGCTCTTGTCTTTCAGAAGA +
Preference number: 4 (lower is better)
Translates to: QRGISEFQFQDSQVTKRISDISK*LLSFRR
Trigger: TCTTCTGAAAGACAAGAGCCACTTAGATATGTCTGA...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTATACCTCCTGTGGTCTaGAGCAGCTCCACTTGTTCT +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPIPPVV*SSSTCS
Trigger: AGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTAT...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCTTTCCATATTCACTCTaGTGGCCACACATGTTGCTT +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVFPYSL*WPHMLL
Trigger: AAGCAACATGTGTGGCCATCAGAGTGAATATGGAAA...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGGCTTTTCTGTTACAGTaGGATAATTCTTCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: FESRSCYISSLGKWCPVTAFLLQ*DNSSRV
Trigger: AACTCTGGAAGAATTATCTCACTGTAACAGAAAAGC...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTAACCTGTATTTGTTCTaGAAAACCTTTTGTTGGGCG +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARNLYLF*KTFCWA
Trigger: CGCCCAACAAAAGGTTTTGCAGAACAAATACAGGTT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTCCAATCCATACAGTGTaGGTTTGGTTCATTTTTGGA +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARPIHTV*VWFIFG
Trigger: TCCAAAAATGAACCAAACGCACACTGTATGGATTGG...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCATCCCCACACTTGGTCTaGTCAAATCAGCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDASPHLV*SNQPHG
Trigger: CCCATGAGGCTGATTTGACCAGACCAAGTGTGGGGA...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGGAGCTGAAGAACCATaGATCCAGATACATCGTTCC +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPGAEEP*IQIHRS
Trigger: GGAACGATGTATCTGGATCCATGGTTCTTCAGCTCC...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAGCTAAGCTCTCAGCCTaGCCACTGCTGACATCAACA +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDAAKLSA*PLLTST
Trigger: TGTTGATGTCAGCAGTGGCCAGGCTGAGAGCTTAGC...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR TCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTGCTTTTCTGTTACAGTaGGATAATTCTTCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARAFLLQ*DNSSRV
Trigger: AACTCTGGAAGAATTATCTCACTGTAACAGAAAAGC...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTATGCCATCCTCTACCTaGCTCATTATCACTTTACCG +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPMPSST*LIITLP
Trigger: CGGTAAAGTGATAATGAGTCAGGTAGAGGATGGCAT...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCACTGCATTTCCAGATCTaGCTCTCTCTCCTCAAGGAG +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDALHFQI*LSLLKE
Trigger: CTCCTTGAGGAGAGAGAGGCAGATCTGGAAATGCAG...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCAATCAGAGTTTTGGCTaGCTCTATGCAGACATCATA +
Preference number: 4 (lower is better)
Translates to: YFESRSCYISSLGKWCPVNQSFG*LYADII
Trigger: TATGATGTCTGCATAGAGCCAGCCAAAACTCTGATT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTCGGAGTGTGATGTTTTaGCTACCTCTTCTTCTGACA +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPRSVMF*LPLLLT
Trigger: TGTCAGAAGAAGAGGTAGCCAAAACATCACACTCCG...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCATTAGATTCATCACCCTaGGGACAGACTCCACCTTGG +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDALDSSP*GQTPPW
Trigger: CCAAGGTGGAGTCTGTCCCCAGGGTGATGAATCTAA...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CCA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTCATACAGTGTGCGTTTaGTTCATTTTTGGAACAAGA +
Preference number: 4 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARHTVCV*FIFGTR
Trigger: TCTTGTTCCAAAAATGAACCAAACGCACACTGTATG...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
3UTR CAA 72 bp TCTGTTTTTCCAAAGAGATGCCAGGCACGAACCATTTaGCGAAGTTTAGCAAGGTTGGGTTTAACCTGTTTT +
Preference number: 4 (lower is better)
Translates to: SVFPKRCQARTI*RSLARLGLTCF
Trigger: AAAACAGGTTAAACCCAACCTTGCTAAACTTCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
CDS-3UTR CCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTTGTTGGGCGGTTGACTaGATTCTTTACTTAAAGTGC +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPCWAVD*ILYLKC
Trigger: GCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACA...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCATTGGTTTTAGGGAGCTaGAGAACCATGGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDALVLGS*RTMDPD
Trigger: ATCTGGATCCATGGTTCTTCAGCTCCCTAAAACCAA...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAAAGGGCACTGCACATTaGTTACATATATCCCGTGGA +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDAKGTAH*LHISRG
Trigger: TCCACGGGATATATGTAATCAATGTGCAGTGCCCTT...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAATTTTCTCCGGAGTGTaGTGTTTTGGCTACCTCTTC +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDAIFSGV*CFGYLF
Trigger: GAAGAGGTAGCCAAAACATCACACTCCGGAGAAAAT...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTTCACTTTGTACTACATaGGTTATAAAGCCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPSLCTT*VIKPVE
Trigger: CTCCACTGGCTTTATAACTCATGTAGTACAAAGTGA...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR TCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAGAATCATCTCTTTGGTaGAGCGATAGGGATACAGGA +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDAESSLW*SDRDTG
Trigger: TCCTGTATCCCTATCGCTTCACCAAAGAGATGATTC...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR GCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTAACCTGTATTTGTTCTaGAAAACCTTTTGTTGGGCG +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPNLYLF*KTFCWA
Trigger: CGCCCAACAAAAGGTTTTGCAGAACAAATACAGGTT...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR GCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTCCAATCCATACAGTGTaGGTTTGGTTCATTTTTGGA +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPPIHTV*VWFIFG
Trigger: TCCAAAAATGAACCAAACGCACACTGTATGGATTGG...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCACTCTTCCACGACTACTaGGCTCCTTTTTCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDALFHDY*APFSFF
Trigger: AAAGAAGGAAAAAGGAGCCCAGTAGTCGTGGAAGAG...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR GCA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTTTAACTTTTGGGACTTaGCCAATCCGTAAATTTGAC +
Preference number: 4 (lower is better)
Translates to: IYFESRSCYISSLGKWCPLTFGT*PIRKFD
Trigger: GTCAAATTTACGGATTGGGCAAGTCCCAAAAGTTAA...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCATGTTGGGCGGTTGACTaGATTCTTTACTTAAAGTGC +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDACWAVD*ILYLKC
Trigger: GCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACA...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCACTTTTGTTGGGCGGTTaGCTGGATTCTTTACTTAAA +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDALLLGG*LDSLLK
Trigger: TTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAG...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR TCA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAGCTTTTCTGTTACAGTaGGATAATTCTTCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: INLQKIGIICQAPVCMDAAFLLQ*DNSSRV
Trigger: AACTCTGGAAGAATTATCTCACTGTAACAGAAAAGC...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTCAAAAGGCAGAGGTaGGCACCCCACTTCAGGAGC +
Preference number: 5 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQLKRQR*APHFRS
Trigger: GCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGAG...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCCATGTCGGCTATACTaGCCAAGGCCTCTCCTCGGA +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAPCRLY*PRPLLG
Trigger: TCCGAGGAGAGGCCTTGGCAAGTATAGCCGACATGG...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCAGCTAAGGGCAGCATaGAGGGTCTCCCATGAGCAC +
Preference number: 5 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAQLRAA*RVSHEH
Trigger: GTGCTCATGGGAGACCCTCAATGCTGCCCTTAGCTG...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCAGCATCCACAGCATaGCTGTTGTGCCTCAGCATG +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTAASTA*LLCLSM
Trigger: CATGCTGAGGCACAACAGCAATGCTGTGGATGCTGC...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGCCGGAGTGTGATGTTTaGGCTACCTCTTCTTCTGAC +
Preference number: 5 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARPECDV*ATSSSD
Trigger: GTCAGAAGAAGAGGTAGCCAAAACATCACACTCCGG...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGAACGGTGTCGAGGACTaGAATTCATTTGCCTACTGG +
Preference number: 5 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQNGVED*NSFAYW
Trigger: CCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTT...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTAACGGTGTCGAGGACTaGAATTCATTTGCCTACTGG +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTNGVED*NSFAYW
Trigger: CCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCCGGAGTGTGATGTTTaGGCTACCTCTTCTTCTGAC +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAPECDV*ATSSSD
Trigger: GTCAGAAGAAGAGGTAGCCAAAACATCACACTCCGG...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGCGGAATGTCATTATTTaGGGGAATGTTGGCAGCCAT +
Preference number: 5 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARRNVII*GNVGSH
Trigger: ATGGCTGCCAACATTCCCCAAAATAATGACATTCCG...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGCCAAGTTGTCATCTGTaGCTACAGGTTTGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARPSCHL*LQVCSL
Trigger: CAGAGAACAAACCTGTAGCAACAGATGACAACTTGG...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTCAAAAGGCAGAGGTaGGCACCCCACTTCAGGAGC +
Preference number: 5 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSLKRQR*APHFRS
Trigger: GCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGAG...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTCCAAGTTGTCATCTGTaGCTACAGGTTTGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTPSCHL*LQVCSL
Trigger: CAGAGAACAAACCTGTAGCAACAGATGACAACTTGG...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGGCAGAATCTGCCATaGGAAGCATATCACTCTCTA +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCWQNLP*EAYHSL
Trigger: TAGAGAGTGATATGCTTCCAATGGCAGATTCTGCCA...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTTGGCAGAATCTGCCATaGGAAGCATATCACTCTCTA +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTWQNLP*EAYHSL
Trigger: TAGAGAGTGATATGCTTCCAATGGCAGATTCTGCCA...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGCCATACAGTGTGCGTTaGGTTCATTTTTGGAACAAG +
Preference number: 5 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARPYSVR*VHFWNK
Trigger: CTTGTTCCAAAAATGAACCAAACGCACACTGTATGG...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCCGAGCAAACACTGGATaGCTCCATTCTGAAAACAGA +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCRANTG*LHSENR
Trigger: TCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCG...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp TGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGAAGCAGGCAATAAACTaGTTATCCACTTGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: CQPAQGRRPAHSCTAPARKQAIN*LSTCWR
Trigger: TCTCCAGCAAGTGGATAACAAGTTTATTGCCTGCTT...CCGAGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTAAAGGGCACTGCACATaGATTACATATATCCCGTGG +
Preference number: 5 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAKGHCT*ITYIPW
Trigger: CCACGGGATATATGTAATCAATGTGCAGTGCCCTTT...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCAACTCAATCAGAGTTTaGGCTGGCTCTATGCAGACA +
Preference number: 5 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSNSIRV*AGSMQT
Trigger: TGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTT...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCCGGAATGTCATTATTTaGGGGAATGTTGGCAGCCAT +
Preference number: 5 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSRNVII*GNVGSH
Trigger: ATGGCTGCCAACATTCCCCAAAATAATGACATTCCG...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTCGGAATGTCATTATTTaGGGGAATGTTGGCAGCCAT +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPARNVII*GNVGSH
Trigger: ATGGCTGCCAACATTCCCCAAAATAATGACATTCCG...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGAACATCGGGTTCATTTaGAGGATCAAGATGAGTCCT +
Preference number: 5 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQNIGFI*RIKMSP
Trigger: AGGACTCATCTTGATCCTCAAAATGAACCCGATGTT...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTCCATACAGTGTGCGTTaGGTTCATTTTTGGAACAAG +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTPYSVR*VHFWNK
Trigger: CTTGTTCCAAAAATGAACCAAACGCACACTGTATGG...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCAAGCAGGCAATAAACTaGTTATCCACTTGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCKQAIN*LSTCWR
Trigger: TCTCCAGCAAGTGGATAACAAGTTTATTGCCTGCTT...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp CTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGAAGCAGGCAATAAACTaGTTATCCACTTGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: LLRGTDVPARSGPPTCPQKQAIN*LSTCWR
Trigger: TCTCCAGCAAGTGGATAACAAGTTTATTGCCTGCTT...CTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp TGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCGTCTATCACTTGAACTaGGAAGGTTTCCATATTCAC +
Preference number: 5 (lower is better)
Translates to: CSGGLMCQPAQGRRPAHSVYHLN*EGFHIH
Trigger: GTGAATATGGAAACCTTCCAAGTTCAAGTGATAGAC...GCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCGGCTTGAAAACATTTTaGGACTGGTTTCATGTATCC +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCGLKTF*DWFHVS
Trigger: GGATACATGAAACCAGTCCAAAAATGTTTTCAAGCC...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTTGTCTGGAGTCTCAATaGCATGGTGTGTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPACLESQ*HGVFFF
Trigger: GAAAAAGAACACACCATGCAATTGAGACTCCAGACA...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTAACATCGGGTTCATTTaGAGGATCAAGATGAGTCCT +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPANIGFI*RIKMSP
Trigger: AGGACTCATCTTGATCCTCAAAATGAACCCGATGTT...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCATATCTAAGTGGCTCTaGTCTTTCAGAAGAACATCG +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCISKWL*SFRRTS
Trigger: CGATGTTCTTCTGAAAGACAAGAGCCACTTAGATAT...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTATATCTAAGTGGCTCTaGTCTTTCAGAAGAACATCG +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTISKWL*SFRRTS
Trigger: CGATGTTCTTCTGAAAGACAAGAGCCACTTAGATAT...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTTGGCAGAATCTGCCATaGGAAGCATATCACTCTCTA +
Preference number: 5 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPWQNLP*EAYHSL
Trigger: TAGAGAGTGATATGCTTCCAATGGCAGATTCTGCCA...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCAGTTCACTGTTTTTATaGATGGGACCATCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: TDVPARSGPPTCPQLHCSSSLFL*MGPSSV
Trigger: CACAGAGGATGGTCCCATCAATAAAAACAGTGAACT...GGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTAGTTCACTGTTTTTATaGATGGGACCATCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTASSLFL*MGPSSV
Trigger: CACAGAGGATGGTCCCATCAATAAAAACAGTGAACT...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGTGTCATCCGTTGTATaGTTAGGATGTAGTTCACTG +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAVSSVV*LGCSSL
Trigger: CAGTGAACTACATCCTAACAATACAACGGATGACAC...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCGCGTTTGGTTCATTTTaGGAACAAGATCTTGCCTTA +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCAFGSF*EQDLAL
Trigger: TAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGC...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTCCAGTGGAGGGATTATaGTGGAAGACAATAATTTCT +
Preference number: 5 (lower is better)
Translates to: GGLMCQPAQGRRPAHSCTPVEGL*WKTIIS
Trigger: AGAAATTATTGTCTTCCACAATAATCCCTCCACTGG...AGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp GATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCCCAGTGGAGGGATTATaGTGGAAGACAATAATTTCT +
Preference number: 5 (lower is better)
Translates to: DVPARSGPPTCPQLHCSCPVEGL*WKTIIS
Trigger: AGAAATTATTGTCTTCCACAATAATCCCTCCACTGG...GCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCCAGTGGCAGTGTCCCTaGGATACCTCCTGTGGTCTG +
Preference number: 5 (lower is better)
Translates to: APARDARHSLVSLHSRILQWQCP*DTSCGL
Trigger: CAGACCACAGGAGGTATCCAAGGGACACTGCCACTG...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAACAGCTAAGGGCAGCATaGAGGGTCTCCCATGAGCAC +
Preference number: 5 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEQLRAA*RVSHEH
Trigger: GTGCTCATGGGAGACCCTCAATGCTGCCCTTAGCTG...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCATGTCGGCTATACTaGCCAAGGCCTCTCCTCGGA +
Preference number: 5 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNPCRLY*PRPLLG
Trigger: TCCGAGGAGAGGCCTTGGCAAGTATAGCCGACATGG...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGGCTTGAAAACATTTTaGGACTGGTTTCATGTATCC +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAGLKTF*DWFHVS
Trigger: GGATACATGAAACCAGTCCAAAAATGTTTTCAAGCC...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTGGCTTGAAAACATTTTaGGACTGGTTTCATGTATCC +
Preference number: 5 (lower is better)
Translates to: GLMCQPAQGRRPAHSCTAGLKTF*DWFHVS
Trigger: GGATACATGAAACCAGTCCAAAAATGTTTTCAAGCC...AGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATGTGCCAGCCCGCTCAGGGCCGCCGACCTGCCCACAGCTGCACTGCTCCTGCTGCGTTTGGTTCATTTTaGGAACAAGATCTTGCCTTA +
Preference number: 5 (lower is better)
Translates to: MCQPAQGRRPAHSCTAPAAFGSF*EQDLAL
Trigger: TAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGC...AGCAGGAGCAGTGCAGCTGTGGGCAGGTCGGCGGCCCTGAGCGGGCTGGCACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp GCCTGGGAGGCCAACACCTTCTGGACAGTCAGTGGCAGTGTCCCTTaGATACCTCCTGTGGTCTGGAGCAGCTCCACTTGTTCTCGAATT +
Preference number: 5 (lower is better)
Translates to: AWEANTFWTVSGSVP*IPPVVWSSSTCSRI
Trigger: AATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTCCCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGCTCCATCTGCTCAGGGGGACTGATGTGCCAGCCCGCTCAGGGCCGCCGACCTTTATTTTGGGGAATGTaGGCAGCCATGACATTAACA +
Preference number: 5 (lower is better)
Translates to: CSICSGGLMCQPAQGRRPLFWGM*AAMTLT
Trigger: TGTTAATGTCATGGCTGCCAACATTCCCCAAAATAA...AGGTCGGCGGCCCTGAGCGGGCTGGCACATCAGTCCCCCTGAGCAGATGGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCTCCACAGCATTGCTGTaGTGCCTCAGCATGGTCCTC +
Preference number: 5 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLSTALL*CLSMVL
Trigger: GAGGACCATGCTGAGGCACAACAGCAATGCTGTGGA...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCCAGTGGCAGTGTCCCTaGGATACCTCCTGTGGTCTG +
Preference number: 5 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTQWQCP*DTSCGL
Trigger: CAGACCACAGGAGGTATCCAAGGGACACTGCCACTG...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS CCA 90 bp CAGCAGCAGCAGCAGCATCCACAGCATTGCTGTTGTGCCTCAGCATaGTCCTCTCTTCCTGAGCTCTTGGCAGGAAAGGAAGAACAAGAT +
Preference number: 5 (lower is better)
Translates to: QQQQQHPQHCCCASA*SSLPELLAGKEEQD
Trigger: ATCTTGTTCTTCCTTTCCTGCCAAGAGCTCAGGAAGAGAGGACCATGCTGAGGCACAACAGCAATGCTGTGGATGCTGCTGCTGCTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCAACGGTGTCGAGGACTaGAATTCATTTGCCTACTGG +
Preference number: 5 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLNGVED*NSFAYW
Trigger: CCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTT...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTCTGAGTTCCTGTCTGGAGTCTCAATaGCATGGTGTGTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: RAPLIPALGGSKGGSLSSCLESQ*HGVFFF
Trigger: GAAAAAGAACACACCATGCAATTGAGACTCCAGACA...GGAACTCAGAGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp CAGTGGTGGCGCGCACCGTTAATCCCAGCACTCGGAGGCAGCAAAGGGGGATCTATATCTAAGTGGCTCTaGTCTTTCAGAAGAACATCG +
Preference number: 5 (lower is better)
Translates to: QWWRAPLIPALGGSKGGSISKWL*SFRRTS
Trigger: CGATGTTCTTCTGAAAGACAAGAGCCACTTAGATAT...AGATCCCCCTTTGCTGCCTCCGAGTGCTGGGATTAACGGTGCGCGCCACCACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCCGAGCAAACACTGGATaGCTCCATTCTGAAAACAGA +
Preference number: 5 (lower is better)
Translates to: APARDARHSLVSLHSRILRANTG*LHSENR
Trigger: TCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCG...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS GCA 90 bp GAATCAGTAATAAGCTGCTCCAAACGAATGCGTTCATGGGCAGCATaGTGGTCCACCAGGACTAACAGGTTTCCACCTGTTCGGCCATCC +
Preference number: 5 (lower is better)
Translates to: ESVISCSKRMRSWAA*WSTRTNRFPPVRPS
Trigger: GGATGGCCGAACAGGTGGAAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGCTTATTACTGATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 90 bp TCAGTAATAAGCTGCTCCAAACGAATGCGTTCATGGGCAGCATGCTaGTCCACCAGGACTAACAGGTTTCCACCTGTTCGGCCATCCTCA +
Preference number: 5 (lower is better)
Translates to: SVISCSKRMRSWAAC*STRTNRFPPVRPSS
Trigger: TGAGGATGGCCGAACAGGTGGAAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGCTTATTACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGCCATGTCGGCTATACTaGCCAAGGCCTCTCCTCGGA +
Preference number: 5 (lower is better)
Translates to: FESRSCYISSLGKWCPVTPCRLY*PRPLLG
Trigger: TCCGAGGAGAGGCCTTGGCAAGTATAGCCGACATGG...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATAAAGGGCACTGCACATaGATTACATATATCCCGTGG +
Preference number: 5 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNKGHCT*ITYIPW
Trigger: CCACGGGATATATGTAATCAATGTGCAGTGCCCTTT...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAAGTGTCATCCGTTGTATaGTTAGGATGTAGTTCACTG +
Preference number: 5 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEVSSVV*LGCSSL
Trigger: CAGTGAACTACATCCTAACAATACAACGGATGACAC...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 90 bp ACACTGGATTGCTCCATTCTGAAAACAGAGACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCATCCACAGCATTGCTGTTGTGCCTCA +
Preference number: 5 (lower is better)
Translates to: TLDCSILKTETEGVH*QQQQQHPQHCCCAS
Trigger: TGAGGCACAACAGCAATGCTGTGGATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCAATCCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS CCA 90 bp ACACCTTCTGGACAGTCAGTGGCAGTGTCCCTTGGATACCTCCTGTaGTCTGGAGCAGCTCCACTTGTTCTCGAATTAATTCCTCCACAA +
Preference number: 5 (lower is better)
Translates to: TPSGQSVAVSLGYLL*SGAAPLVLELIPPQ
Trigger: TTGTGGAGGAATTAATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCAGTGTTGTGTTTTTCTaGGATGAAATCTCCACAGCA +
Preference number: 5 (lower is better)
Translates to: APARDARHSLVSLHSRILSVVFF*DEISTA
Trigger: TGCTGTGGAGATTTCATCCAAGAAAAACACAACACT...GAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTCTCAAAAGGCAGAGGTaGGCACCCCACTTCAGGAGC +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARLKRQR*APHFRS
Trigger: GCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGAG...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATCCTCTCAACATCGGGTTCATTTaGAGGATCAAGATGAGTCCT +
Preference number: 5 (lower is better)
Translates to: SCSGCTALPCLLTLQNPLNIGFI*RIKMSP
Trigger: AGGACTCATCTTGATCCTCAAAATGAACCCGATGTT...GAGAGGATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAATAGTTCACTGTTTTTATaGATGGGACCATCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: HCSCSGCTALPCLLTLQNSSLFL*MGPSSV
Trigger: CACAGAGGATGGTCCCATCAATAAAAACAGTGAACT...ATTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GCACTGCTCCTGCTCGGGATGCACGGCACTCCCTTGTCTCCTTACACTCCAGAACCAGTGGAGGGATTATaGTGGAAGACAATAATTTCT +
Preference number: 5 (lower is better)
Translates to: ALLLLGMHGTPLSPYTPEPVEGL*WKTIIS
Trigger: AGAAATTATTGTCTTCCACAATAATCCCTCCACTGG...TTCTGGAGTGTAAGGAGACAAGGGAGTGCCGTGCATCCCGAGCAGGAGCAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 90 bp TTCTGGACAGTCAGTGGCAGTGTCCCTTGGATACCTCCTGTGGTCTaGAGCAGCTCCACTTGTTCTCGAATTAATTCCTCCACAATACTC +
Preference number: 5 (lower is better)
Translates to: FWTVSGSVPWIPPVV*SSSTCSRINSSTIL
Trigger: GAGTATTGTGGAGGAATTAATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp TTCCTGAGCTCTTGGCAGGAAAGGAAGAACAAGATCGCTTCTAAATaGATGACACCTGTACTGAGCCCCATTCCCAAGCAGGACATCCAC +
Preference number: 5 (lower is better)
Translates to: FLSSWQERKNKIASK*MTPVLSPIPKQDIH
Trigger: GTGGATGTCCTGCTTGGGAATGGGGCTCAGTACAGGTGTCATCCATTTAGAAGCGATCTTGTTCTTCCTTTCCTGCCAAGAGCTCAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCAAAGGGCACTGCACATaGATTACATATATCCCGTGG +
Preference number: 5 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTKGHCT*ITYIPW
Trigger: CCACGGGATATATGTAATCAATGTGCAGTGCCCTTT...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCCGAGCAAACACTGGATaGCTCCATTCTGAAAACAGA +
Preference number: 5 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTRANTG*LHSENR
Trigger: TCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCG...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS TCA 90 bp CTGGCTCTATGCAGACATCATACTCACAGAAAGGGCACTGCACATTaGTTACATATATCCCGTGGAGTTCTGAGGCAGAACGGTGTCGAG +
Preference number: 5 (lower is better)
Translates to: LALCRHHTHRKGTAH*LHISRGVLRQNGVE
Trigger: CTCGACACCGTTCTGCCTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 90 bp CCGTGGAGTTCTGAGGCAGAACGGTGTCGAGGACTTGAATTCATTTaGCTACTGGCAGAGCCATTCTTTGGCCTGCATATAATGCTTTCT +
Preference number: 5 (lower is better)
Translates to: PWSSEAERCRGLEFI*LLAEPFFGLHIMLS
Trigger: AGAAAGCATTATATGCAGGCCAAAGAATGGCTCTGCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTTCTGCCTCAGAACTCCACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CCCTGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCCGAGCAAACACTGGATaGCTCCATTCTGAAAACAGA +
Preference number: 5 (lower is better)
Translates to: PCHGLVSASQVLGLQVYVRANTG*LHSENR
Trigger: TCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCG...GACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCAAGCAGGCAATAAACTaGTTATCCACTTGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTKQAIN*LSTCWR
Trigger: TCTCCAGCAAGTGGATAACAAGTTTATTGCCTGCTT...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS GCA 90 bp GTTTTGGCTGGCTCTATGCAGACATCATACTCACAGAAAGGGCACTaGACATTGATTACATATATCCCGTGGAGTTCTGAGGCAGAACGG +
Preference number: 5 (lower is better)
Translates to: VLAGSMQTSYSQKGH*TLITYIPWSSEAER
Trigger: CCGTTCTGCCTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCTTTTCCAAATGTTTCTaGGGCACTTACAGGACCAGG +
Preference number: 5 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPFSKCF*GTYRTR
Trigger: CCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAAA...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS GCA 90 bp GAGAAAGAAATGGAGGGGTGCATAAGTGAGAGAGCTTCTACCCTCTaGCGAACTTTCTCAAACTCTAGTCTAGGATCCATGCTTTTCCTC +
Preference number: 5 (lower is better)
Translates to: EKEMEGCISERASTL*RTFSNSSLGSMLFL
Trigger: GAGGAAAAGCATGGATCCTAGACTAGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCCATTTCTTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp AAAAACCAGGGACAGGGTTGTAATTTTTCTTGCCAGGCAGTGGTGGCGCGCACCTTTCCATTTCTCCAGTaGACTCGGAATGTCATTATT +
Preference number: 5 (lower is better)
Translates to: KNQGQGCNFSCQAVVARTFPFLQ*TRNVII
Trigger: AATAATGACATTCCGAGTCAACTGGAGAAATGGAAA...GGTGCGCGCCACCACTGCCTGGCAAGAAAAATTACAACCCTGTCCCTGGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCTGTCTGGAGTCTCAATaGCATGGTGTGTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPCLESQ*HGVFFF
Trigger: GAAAAAGAACACACCATGCAATTGAGACTCCAGACA...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGCCAAGTTGTCATCTGTaGCTACAGGTTTGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: FESRSCYISSLGKWCPVTPSCHL*LQVCSL
Trigger: CAGAGAACAAACCTGTAGCAACAGATGACAACTTGG...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCGTGTCATCCGTTGTATaGTTAGGATGTAGTTCACTG +
Preference number: 5 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPVSSVV*LGCSSL
Trigger: CAGTGAACTACATCCTAACAATACAACGGATGACAC...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS TCA 90 bp AGGACATCCACAGCCACAGTTGTCAGATCTTTAGTACAAGCAGTATaGAGGTCGTCAGTTGGAGCAACGAATGTGCTAAGTCCTGTCATT +
Preference number: 5 (lower is better)
Translates to: RTSTATVVRSLVQAV*RSSVGATNVLSPVI
Trigger: AATGACAGGACTTAGCACATTCGTTGCTCCAACTGACGACCTTCATACTGCTTGTACTAAAGATCTGACAACTGTGGCTGTGGATGTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 90 bp TCATACTCACAGAAAGGGCACTGCACATTGATTACATATATCCCGTaGAGTTCTGAGGCAGAACGGTGTCGAGGACTTGAATTCATTTGC +
Preference number: 5 (lower is better)
Translates to: SYSQKGHCTLITYIP*SSEAERCRGLEFIC
Trigger: GCAAATGAATTCAAGTCCTCGACACCGTTCTGCCTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp AATCAACACGGTATCCCAGCTCTGAAACTCAATCAGAGTTTTGGCTaGCTCTATGCAGACATCATACTCACAGAAAGGGCACTGCACATT +
Preference number: 5 (lower is better)
Translates to: NQHGIPALKLNQSFG*LYADIILTERALHI
Trigger: AATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTTTCAGAGCTGGGATACCGTGTTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp TACAAATCAACACGGTATCCCAGCTCTGAAACTCAATCAGAGTTTTaGCTGGCTCTATGCAGACATCATACTCACAGAAAGGGCACTGCA +
Preference number: 5 (lower is better)
Translates to: YKSTRYPSSETQSEF*LALCRHHTHRKGTA
Trigger: TGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTTTCAGAGCTGGGATACCGTGTTGATTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp TTTCCAGATCTGCCTCTCTCTCCTCAAGGAGGTGATGCATTTGGATaGGGCTTGAAAACATTTTTGGACTGGTTTCATGTATCCTTCCTG +
Preference number: 5 (lower is better)
Translates to: FPDLPLSPQGGDAFG*GLKTFLDWFHVSFL
Trigger: CAGGAAGGATACATGAAACCAGTCCAAAAATGTTTTCAAGCCCCATCCAAATGCATCACCTCCTTGAGGAGAGAGAGGCAGATCTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTTCCATTGTCTATCACTaGAACTTGGAAGGTTTCCAT +
Preference number: 5 (lower is better)
Translates to: QRGISEFQFQDSQVTKRISIVYH*NLEGFH
Trigger: ATGGAAACCTTCCAAGTTCAAGTGATAGACAATGGA...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTAACTCAATCAGAGTTTaGGCTGGCTCTATGCAGACA +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARNSIRV*AGSMQT
Trigger: TGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CAAAGGGGGATCTCTGAGTTCCAGTTCCAGGACAGCCAGGTTACCAAGAGAATTTTATTTTGGGGAATGTaGGCAGCCATGACATTAACA +
Preference number: 5 (lower is better)
Translates to: QRGISEFQFQDSQVTKRILFWGM*AAMTLT
Trigger: TGTTAATGTCATGGCTGCCAACATTCCCCAAAATAA...AATTCTCTTGGTAACCTGGCTGTCCTGGAACTGGAACTCAGAGATCCCCCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS TCA 90 bp GTTTGTGGTAAGACCGTAAGAGTCTCCTTTGTTCCTCTGACACGGTaGTTGCCAGTGGAGGGATTATTGTGGAAGACAATAATTTCTTCC +
Preference number: 5 (lower is better)
Translates to: VCGKTVRVSFVPLTR*LPVEGLLWKTIISS
Trigger: GGAAGAAATTATTGTCTTCCACAATAATCCCTCCACTGGCAATCACCGTGTCAGAGGAACAAAGGAGACTCTTACGGTCTTACCACAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp GTTGCTTCAGCATCAATACTGTTAAGGGTAAGTTCTTCAACACACTaGCCCAAGGAGCTTATGGCTAAACCGGAACGCAACTTGGTTTTT +
Preference number: 5 (lower is better)
Translates to: VASASILLRVSSSTH*PKELMAKPERNLVF
Trigger: AAAAACCAAGTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCCAGTGTGTTGAAGAACTTACCCTTAACAGTATTGATGCTGAAGCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGGTCTATCACTTGAACTaGGAAGGTTTCCATATTCAC +
Preference number: 5 (lower is better)
Translates to: FESRSCYISSLGKWCPVTVYHLN*EGFHIH
Trigger: GTGAATATGGAAACCTTCCAAGTTCAAGTGATAGAC...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp TTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCACGTCCATTGTCTATCACTaGAACTTGGAAGGTTTCCAT +
Preference number: 5 (lower is better)
Translates to: FESRSCYISSLGKWCPVTSIVYH*NLEGFH
Trigger: ATGGAAACCTTCCAAGTTCAAGTGATAGACAATGGA...CGTGACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp TATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTGTCAACTCAATCAGAGTTTaGGCTGGCTCTATGCAGACA +
Preference number: 5 (lower is better)
Translates to: YFESRSCYISSLGKWCPVNSIRV*AGSMQT
Trigger: TGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTT...GACAGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp GGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTACACCCTTTCCATTTCTCCAGTaGACTCGGAATGTCATTATT +
Preference number: 5 (lower is better)
Translates to: GLVSASQVLGLQVYVTTPFPFLQ*TRNVII
Trigger: AATAATGACATTCCGAGTCAACTGGAGAAATGGAAA...GGGTGTAGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTCCATACAGTGTGCGTTaGGTTCATTTTTGGAACAAG +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARPYSVR*VHFWNK
Trigger: CTTGTTCCAAAAATGAACCAAACGCACACTGTATGG...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp TGTCACGGACTTGTCTCAGCCTCCCAGGTACTAGGATTACAGGTATATGTCACTCCAGTGGAGGGATTATaGTGGAAGACAATAATTTCT +
Preference number: 5 (lower is better)
Translates to: CHGLVSASQVLGLQVYVTPVEGL*WKTIIS
Trigger: AGAAATTATTGTCTTCCACAATAATCCCTCCACTGG...AGTGACATATACCTGTAATCCTAGTACCTGGGAGGCTGAGACAAGTCCGTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS TCA 90 bp GCATCAGGCAAAAGGCGATCTGTGTGTGATTCTTTACAGCTTTCCTaGAAAAGAGCCAAGTTGTCATCTGTTGCTACAGGTTTGTTCTCT +
Preference number: 5 (lower is better)
Translates to: ASGKRRSVCDSLQLS*KRAKLSSVATGLFS
Trigger: AGAGAACAAACCTGTAGCAACAGATGACAACTTGGCTCTTTTTCAGGAAAGCTGTAAAGAATCACACACAGATCGCCTTTTGCCTGATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTGTCTATCACTTGAACTaGGAAGGTTTCCATATTCAC +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARVYHLN*EGFHIH
Trigger: GTGAATATGGAAACCTTCCAAGTTCAAGTGATAGAC...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTAGTGTTGTGTTTTTCTaGGATGAAATCTCCACAGCA +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARSVVFF*DEISTA
Trigger: TGCTGTGGAGATTTCATCCAAGAAAAACACAACACT...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTTTATTTTGGGGAATGTaGGCAGCCATGACATTAACA +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARLFWGM*AAMTLT
Trigger: TGTTAATGTCATGGCTGCCAACATTCCCCAAAATAA...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 90 bp TGCAAAACCTTTTGTTGGGCGGTTGACTGGATTCTTTACTTAAAGTaGTTGTTAAATCACTGCTGTCTGGAGTCTCAATTGCATGGTGTG +
Preference number: 5 (lower is better)
Translates to: CKTFCWAVDWILYLK*LLNHCCLESQLHGV
Trigger: CACACCATGCAATTGAGACTCCAGACAGCAGTGATTTAACAAGCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAGGTTTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 90 bp TCTTCCCAGGGTTACATCAAAATGCTGCTGCCAATCCATACAGTGTaGGTTTGGTTCATTTTTGGAACAAGATCTTGCCTTAGATTCATC +
Preference number: 5 (lower is better)
Translates to: SSQGYIKMLLPIHTV*VWFIFGTRSCLRFI
Trigger: GATGAATCTAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGCACACTGTATGGATTGGCAGCAGCATTTTGATGTAACCCTGGGAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp CACAGTTGTCAGATCTTTAGTACAAGCAGTATGAAGGTCGTCAGTTaGAGCAACGAATGTGCTAAGTCCTGTCATTCTGTTGATGTAAAC +
Preference number: 5 (lower is better)
Translates to: HSCQIFSTSSMKVVS*SNECAKSCHSVDVN
Trigger: GTTTACATCAACAGAATGACAGGACTTAGCACATTCGTTGCTCCAACTGACGACCTTCATACTGCTTGTACTAAAGATCTGACAACTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS-3UTR CAA 90 bp CTCCTGTGTGCATGGATGCAAAGAAATAAACTACCCTTAGGCTTGAGTGCACGTTTTCCATTTCTCCAGTaGACTCGGAATGTCATTATT +
Preference number: 5 (lower is better)
Translates to: LLCAWMQRNKLPLGLSARFPFLQ*TRNVII
Trigger: AATAATGACATTCCGAGTCAACTGGAGAAATGGAAA...ACGTGCACTCAAGCCTAAGGGTAGTTTATTTCTTTGCATCCATGCACACAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATTTATTTTGAGTCAAGGTCTTGCTATATATCCAGCCTAGGCAAATGGTGCCCTTTTTCCAAATGTTTCTaGGGCACTTACAGGACCAGG +
Preference number: 5 (lower is better)
Translates to: IYFESRSCYISSLGKWCPFSKCF*GTYRTR
Trigger: CCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAAA...AGGGCACCATTTGCCTAGGCTGGATATATAGCAAGACCTTGACTCAAAATAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
CDS GCA 90 bp TTGAACTTGGAAGGTTTCCATATTCACTCTGATGGCCACACATGTTaGTTCAGCATCAATACTGTTAAGGGTAAGTTCTTCAACACACTG +
Preference number: 5 (lower is better)
Translates to: LNLEGFHIHSDGHTC*FSINTVKGKFFNTL
Trigger: CAGTGTGTTGAAGAACTTACCCTTAACAGTATTGATGCTGAAGCAACATGTGTGGCCATCAGAGTGAATATGGAAACCTTCCAAGTTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 90 bp TTATTATCCTTTTCTGTATCTAGGGAACTGCTGACCTTCCCATACTaGCTCTTAAACTTCTCTAAAGACCCTACTTGTGAACGCAAGCTT +
Preference number: 5 (lower is better)
Translates to: LLSFSVSRELLTFPY*LLNFSKDPTCERKL
Trigger: AAGCTTGCGTTCACAAGTAGGGTCTTTAGAGAAGTTTAAGAGGCAGTATGGGAAGGTCAGCAGTTCCCTAGATACAGAAAAGGATAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 90 bp CTTAAAGTGCTTGTTAAATCACTGCTGTCTGGAGTCTCAATTGCATaGTGTGTTCTTTTTCCAAATGTTTCTTGGGCACTTACAGGACCA +
Preference number: 5 (lower is better)
Translates to: LKVLVKSLLSGVSIA*CVLFPNVSWALTGP
Trigger: TGGTCCTGTAAGTGCCCAAGAAACATTTGGAAAAAGAACACACCATGCAATTGAGACTCCAGACAGCAGTGATTTAACAAGCACTTTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 90 bp CTATTATCTTTCCAACTGGGATTTGAATCTGGAAGTTCACTAGTATaGCCTGTCATCCCCACGGTTTGCATCTCTTTTTCAGAATCCTTT +
Preference number: 5 (lower is better)
Translates to: LLSFQLGFESGSSLV*PVIPTVCISFSESF
Trigger: AAAGGATTCTGAAAAAGAGATGCAAACCGTGGGGATGACAGGTCATACTAGTGAACTTCCAGATTCAAATCCCAGTTGGAAAGATAATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCATTTTCCAAATGTTTCTaGGGCACTTACAGGACCAGG +
Preference number: 5 (lower is better)
Translates to: INLQKIGIICQAPVCMDAFSKCF*GTYRTR
Trigger: CCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAAA...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS-3UTR CAA 90 bp ATCAACTTACAAAAGATAGGTATTATATGTCAAGCTCCTGTGTGCATGGATGCAGCGTTTGGTTCATTTTaGGAACAAGATCTTGCCTTA +
Preference number: 5 (lower is better)
Translates to: INLQKIGIICQAPVCMDAAFGSF*EQDLAL
Trigger: TAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGC...TGCATCCATGCACACAGGAGCTTGACATATAATACCTATCTTTTGTAAGTTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp GGCCTGGGAGGCCAACACCTTCTGGACAGTCAGTGGCAGTGTCCCTaGGATACCTCCTGTGGTCTGGAGCAGCTCCACTTGTTCTCGAAT +
Preference number: 6 (lower is better)
Translates to: GLGGQHLLDSQWQCP*DTSCGLEQLHLFSN
Trigger: ATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTCCCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp AGCTGCTCCAAACGAATGCGTTCATGGGCAGCATGCTaGTCCACCAGGACTAACAGGTTTCCACCTGTTCGG +
Preference number: 6 (lower is better)
Translates to: SCSKRMRSWAAC*STRTNRFPPVR
Trigger: CCGAACAGGTGGAAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 72 bp CAGCAGCATCCACAGCATTGCTGTTGTGCCTCAGCATaGTCCTCTCTTCCTGAGCTCTTGGCAGGAAAGGAA +
Preference number: 6 (lower is better)
Translates to: QQHPQHCCCASA*SSLPELLAGKE
Trigger: TTCCTTTCCTGCCAAGAGCTCAGGAAGAGAGGACCATGCTGAGGCACAACAGCAATGCTGTGGATGCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS CCA 72 bp GTCAGTGGCAGTGTCCCTTGGATACCTCCTGTGGTCTaGAGCAGCTCCACTTGTTCTCGAATTAATTCCTCC +
Preference number: 6 (lower is better)
Translates to: VSGSVPWIPPVV*SSSTCSRINSS
Trigger: GGAGGAATTAATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp TGCTCCATTCTGAAAACAGAGACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCATCCACAGCATCATTCC +
Preference number: 6 (lower is better)
Translates to: CSILKTETEGVH*QQQQQHPQHHS
Trigger: GGAATGATGCTGTGGATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000223230.2
CDS TCA 72 bp GCAAACACTGGATTGCTCCATTCTGAAAACAGAGACTaGAGGGGTTCACTGACAGCAGCAGCAGCAGCATCC +
Preference number: 6 (lower is better)
Translates to: ANTGLLHSENRD*RGSLTAAAAAS
Trigger: GGATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCAATCCAGTGTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS TCA 72 bp TGCTCCATTCTGAAAACAGAGACTGAAGGGGTTCACTaGCAGCAGCAGCAGCAGCATCCACAGCATTGCTGT +
Preference number: 6 (lower is better)
Translates to: CSILKTETEGVH*QQQQQHPQHCC
Trigger: ACAGCAATGCTGTGGATGCTGCTGCTGCTGCTGTCAGTGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS GCA 72 bp ATAAGCTGCTCCAAACGAATGCGTTCATGGGCAGCATaGTGGTCCACCAGGACTAACAGGTTTCCACCTGTT +
Preference number: 6 (lower is better)
Translates to: ISCSKRMRSWAA*WSTRTNRFPPV
Trigger: AACAGGTGGAAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGCTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 72 bp GGACAGTCAGTGGCAGTGTCCCTTGGATACCTCCTGTaGTCTGGAGCAGCTCCACTTGTTCTCGAATTAATT +
Preference number: 6 (lower is better)
Translates to: GQSVAVSLGYLL*SGAAPLVLELI
Trigger: AATTAATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTATCCAAGGGACACTGCCACTGACTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp ATGAAATCTCCACAGCACCAGCCATGTCGGCTATACTaGCCAAGGCCTCTCCTCGGAAGCCATAAAATGCTG +
Preference number: 6 (lower is better)
Translates to: MKSPQHQPCRLY*PRPLLGSHKML
Trigger: CAGCATTTTATGGCTTCCGAGGAGAGGCCTTGGCAAGTATAGCCGACATGGCTGGTGCTGTGGAGATTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp TCCCGTGGAGTTCTGAGGCAGAACGGTGTCGAGGACTaGAATTCATTTGCCTACTGGCAGAGCCATTCTTTG +
Preference number: 6 (lower is better)
Translates to: SRGVLRQNGVED*NSFAYWQSHSL
Trigger: CAAAGAATGGCTCTGCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTTCTGCCTCAGAACTCCACGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp TGCCTTAGATTCATCACCCTGGGGACAGACTCCACCTaGGCTGCCAATGCCATCCTCTACCTGACTCATTAT +
Preference number: 6 (lower is better)
Translates to: CLRFITLGTDST*AANAILYLTHY
Trigger: ATAATGAGTCAGGTAGAGGATGGCATTGGCAGCCAAGGTGGAGTCTGTCCCCAGGGTGATGAATCTAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp TTTTCTTGGATGAAATCTCCACAGCACCAGCCATGTCGGCTATACTaGCCAAGGCCTCTCCTCGGAAGCCATAAAATGCTGGGTTCTCCA +
Preference number: 6 (lower is better)
Translates to: FSWMKSPQHQPCRLY*PRPLLGSHKMLGSP
Trigger: TGGAGAACCCAGCATTTTATGGCTTCCGAGGAGAGGCCTTGGCAAGTATAGCCGACATGGCTGGTGCTGTGGAGATTTCATCCAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp GCTGGCTCTATGCAGACATCATACTCACAGAAAGGGCACTGCACATaGATTACATATATCCCGTGGAGTTCTGAGGCAGAACGGTGTCGA +
Preference number: 6 (lower is better)
Translates to: AGSMQTSYSQKGHCT*ITYIPWSSEAERCR
Trigger: TCGACACCGTTCTGCCTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp ATGGAGGGGTGCATAAGTGAGAGAGCTTCTACCCTCTaGCGAACTTTCTCAAACTCTAGTCTAGGATCCATG +
Preference number: 6 (lower is better)
Translates to: MEGCISERASTL*RTFSNSSLGSM
Trigger: CATGGATCCTAGACTAGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp CAACAGCAACCTCTGGGTATCGAGCAAACACTGGATTaGTCCATTCTGAAAACAGAGACTGAAGGGGTTCAC +
Preference number: 6 (lower is better)
Translates to: QQQPLGIEQTLD*SILKTETEGVH
Trigger: GTGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCGATACCCAGAGGTTGCTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 72 bp CGTACCCTTAATAAGGTTGTCTCAAAAGGCAGAGGTTaGCACCCCACTTCAGGAGCATCTTTCCATTTCTCC +
Preference number: 6 (lower is better)
Translates to: RTLNKVVSKGRG*HPTSGASFHFS
Trigger: GGAGAAATGGAAAGATGCTCCTGAAGTGGGGTGCCAACCTCTGCCTTTTGAGACAACCTTATTAAGGGTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp GAATCAGTAATAAGCTGCTCCAAACGAATGCGTTCATaGGCAGCATGCTGGTCCACCAGGACTAACAGGTTT +
Preference number: 6 (lower is better)
Translates to: ESVISCSKRMRS*AACWSTRTNRF
Trigger: AAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCATGAACGCATTCGTTTGGAGCAGCTTATTACTGATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CCA 72 bp TCTTGGCAGGAAAGGAAGAACAAGATCGCTTCTAAATaGATGACACCTGTACTGAGCCCCATTCCCAAGCAG +
Preference number: 6 (lower is better)
Translates to: SWQERKNKIASK*MTPVLSPIPKQ
Trigger: CTGCTTGGGAATGGGGCTCAGTACAGGTGTCATCCATTTAGAAGCGATCTTGTTCTTCCTTTCCTGCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220854.2
CDS CAA 72 bp ATCGTCCCCCGCCATCCCAAGTCCATTGTCTATCACTaGAACTTGGAAGGTTTCCATATTCACTCTGATGGC +
Preference number: 6 (lower is better)
Translates to: IVPRHPKSIVYH*NLEGFHIHSDG
Trigger: GCCATCAGAGTGAATATGGAAACCTTCCAAGTTCAAGTGATAGACAATGGACTTGGGATGGCGGGGGACGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp CTTCTCTACATCGTCCCCCGCCATCCCAAGTCCATTGTCTATCACTaGAACTTGGAAGGTTTCCATATTCACTCTGATGGCCACACATGT +
Preference number: 6 (lower is better)
Translates to: LLYIVPRHPKSIVYH*NLEGFHIHSDGHTC
Trigger: ACATGTGTGGCCATCAGAGTGAATATGGAAACCTTCCAAGTTCAAGTGATAGACAATGGACTTGGGATGGCGGGGGACGATGTAGAGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp TTACATATATCCCGTGGAGTTCTGAGGCAGAACGGTGTCGAGGACTaGAATTCATTTGCCTACTGGCAGAGCCATTCTTTGGCCTGCATA +
Preference number: 6 (lower is better)
Translates to: LHISRGVLRQNGVED*NSFAYWQSHSLACI
Trigger: TATGCAGGCCAAAGAATGGCTCTGCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTTCTGCCTCAGAACTCCACGGGATATATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp ACAGTGTGCGTTTGGTTCATTTTTGGAACAAGATCTTaGCTTAGATTCATCACCCTGGGGACAGACTCCACC +
Preference number: 6 (lower is better)
Translates to: TVCVWFIFGTRS*LRFITLGTDST
Trigger: GGTGGAGTCTGTCCCCAGGGTGATGAATCTAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGCACACTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp GCATCAATACTGTTAAGGGTAAGTTCTTCAACACACTaGCCCAAGGAGCTTATGGCTAAACCGGAACGCAAC +
Preference number: 6 (lower is better)
Translates to: ASILLRVSSSTH*PKELMAKPERN
Trigger: GTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCCAGTGTGTTGAAGAACTTACCCTTAACAGTATTGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp TGCAGACATCATACTCACAGAAAGGGCACTGCACATTaGTTACATATATCCCGTGGAGTTCTGAGGCAGAAC +
Preference number: 6 (lower is better)
Translates to: CRHHTHRKGTAH*LHISRGVLRQN
Trigger: GTTCTGCCTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp AAGACCGTAAGAGTCTCCTTTGTTCCTCTGACACGGTaGTTGCCAGTGGAGGGATTATTGTGGAAGACAATA +
Preference number: 6 (lower is better)
Translates to: KTVRVSFVPLTR*LPVEGLLWKTI
Trigger: TATTGTCTTCCACAATAATCCCTCCACTGGCAATCACCGTGTCAGAGGAACAAAGGAGACTCTTACGGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp GGCTCTATGCAGACATCATACTCACAGAAAGGGCACTaGACATTGATTACATATATCCCGTGGAGTTCTGAG +
Preference number: 6 (lower is better)
Translates to: GSMQTSYSQKGH*TLITYIPWSSE
Trigger: CTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp AGCTCTGAAACTCAATCAGAGTTTTGGCTGGCTCTATaGAGACATCATACTCACAGAAAGGGCACTGCACAT +
Preference number: 6 (lower is better)
Translates to: SSETQSEFWLAL*RHHTHRKGTAH
Trigger: ATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTTTCAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp ACACGGTATCCCAGCTCTGAAACTCAATCAGAGTTTTaGCTGGCTCTATGCAGACATCATACTCACAGAAAG +
Preference number: 6 (lower is better)
Translates to: TRYPSSETQSEF*LALCRHHTHRK
Trigger: CTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAACTCTGATTGAGTTTCAGAGCTGGGATACCGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp CTGCCTCTCTCTCCTCAAGGAGGTGATGCATTTGGATaGGGCTTGAAAACATTTTTGGACTGGTTTCATGTA +
Preference number: 6 (lower is better)
Translates to: LPLSPQGGDAFG*GLKTFLDWFHV
Trigger: TACATGAAACCAGTCCAAAAATGTTTTCAAGCCCCATCCAAATGCATCACCTCCTTGAGGAGAGAGAGGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp CCTAGTGCACTGGCTATTATCTTTCCAACTGGGATTTaGATCTGGAAGTTCACTAGTATGACCTGTCATCCC +
Preference number: 6 (lower is better)
Translates to: PSALAIIFPTGI*IWKFTSMTCHP
Trigger: GGGATGACAGGTCATACTAGTGAACTTCCAGATTCAAATCCCAGTTGGAAAGATAATAGCCAGTGCACTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp ACAGCCACAGTTGTCAGATCTTTAGTACAAGCAGTATaGAGGTCGTCAGTTGGAGCAACGAATGTGCTAAGT +
Preference number: 6 (lower is better)
Translates to: TATVVRSLVQAV*RSSVGATNVLS
Trigger: ACTTAGCACATTCGTTGCTCCAACTGACGACCTTCATACTGCTTGTACTAAAGATCTGACAACTGTGGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS TCA 72 bp AATTCCGTAAGAGTCTCCTTTGTTCCTCTGACACGGTaGTTGCCAGTGGAGGGATTATTGTGGAAGACAATA +
Preference number: 6 (lower is better)
Translates to: NSVRVSFVPLTR*LPVEGLLWKTI
Trigger: TATTGTCTTCCACAATAATCCCTCCACTGGCAATCACCGTGTCAGAGGAACAAAGGAGACTCTTACGGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223230.2
CDS CCA 72 bp TATTTTCCTACAACCATCGGAAACATATCTACACCATaGGAAGGAGGATGCATCAGGCAAAAGGCGATCTGT +
Preference number: 6 (lower is better)
Translates to: YFPTTIGNISTP*EGGCIRQKAIC
Trigger: ACAGATCGCCTTTTGCCTGATGCATCCTCCTTCCCATGGTGTAGATATGTTTCCGATGGTTGTAGGAAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp ATGCAGACATCATACTCACAGAAAGGGCACTGCACATaGATTACATATATCCCGTGGAGTTCTGAGGCAGAA +
Preference number: 6 (lower is better)
Translates to: MQTSYSQKGHCT*ITYIPWSSEAE
Trigger: TTCTGCCTCAGAACTCCACGGGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp TGCTGCCAATCCATACAGTGTGCGTTTGGTTCATTTTaGGAACAAGATCTTGCCTTAGATTCATCACCCTGG +
Preference number: 6 (lower is better)
Translates to: CCQSIQCAFGSF*EQDLALDSSPW
Trigger: CCAGGGTGATGAATCTAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGCACACTGTATGGATTGGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp CCTGTCATCCCCACGGTTTGCATCTCTTTTTCAGAATCCTTTAGTTaGGATAATTTAGAAGCCAGTGATGCAGCGGACTTCTCAACATCA +
Preference number: 6 (lower is better)
Translates to: PVIPTVCISFSESFS*DNLEASDAADFSTS
Trigger: TGATGTTGAGAAGTCCGCTGCATCACTGGCTTCTAAATTATCCAAACTAAAGGATTCTGAAAAAGAGATGCAAACCGTGGGGATGACAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp CAGAATCGAGAGCATATGTCTTTGGTTTTAGGGAGCTaGAGAACCATGGATCCAGATACATCGTTCCTCAAA +
Preference number: 6 (lower is better)
Translates to: QNREHMSLVLGS*RTMDPDTSFLK
Trigger: TTTGAGGAACGATGTATCTGGATCCATGGTTCTTCAGCTCCCTAAAACCAAAGACATATGCTCTCGATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp TTCCAACTGGGATTTGAATCTGGAAGTTCACTAGTATaGCCTGTCATCCCCACGGTTTGCATCTCTTTTTCA +
Preference number: 6 (lower is better)
Translates to: FQLGFESGSSLV*PVIPTVCISFS
Trigger: TGAAAAAGAGATGCAAACCGTGGGGATGACAGGTCATACTAGTGAACTTCCAGATTCAAATCCCAGTTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp CTTCTGACACCCTCGGTTCTAAGTAAGCACTGTTGTTaGTGTCCTGTAAAACAGACTCTACCGATTTACTAT +
Preference number: 6 (lower is better)
Translates to: LLTPSVLSKHCC*CPVKQTLPIYY
Trigger: ATAGTAAATCGGTAGAGTCTGTTTTACAGGACAGCAACAACAGTGCTTACTTAGAACCGAGGGTGTCAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp CAGATCTTTAGTACAAGCAGTATGAAGGTCGTCAGTTaGAGCAACGAATGTGCTAAGTCCTGTCATTCTGTT +
Preference number: 6 (lower is better)
Translates to: QIFSTSSMKVVS*SNECAKSCHSV
Trigger: AACAGAATGACAGGACTTAGCACATTCGTTGCTCCAACTGACGACCTTCATACTGCTTGTACTAAAGATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
ENSMUST00000223230.2
CDS CAA 72 bp TTTTTCCATTTCTCATTTTCTCCGGAGTGTGATGTTTaGGCTACCTCTTCTTCTGACACCCTCGGTTCTAAG +
Preference number: 6 (lower is better)
Translates to: FFHFSFSPECDV*ATSSSDTLGSK
Trigger: CTTAGAACCGAGGGTGTCAGAAGAAGAGGTAGCCAAAACATCACACTCCGGAGAAAATGAGAAATGGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp TACAGCTTTCCTGAAAAAGAGCCAAGTTGTCATCTGTaGCTACAGGTTTGTTCTCTGTCCCGTAACCTGTAT +
Preference number: 6 (lower is better)
Translates to: YSFPEKEPSCHL*LQVCSLSRNLY
Trigger: ATACAGGTTACGGGACAGAGAACAAACCTGTAGCAACAGATGACAACTTGGCTCTTTTTCAGGAAAGCTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp CCCACGGTTTGCATCTCTTTTTCAGAATCCTTTAGTTaGGATAATTTAGAAGCCAGTGATGCAGCGGACTTC +
Preference number: 6 (lower is better)
Translates to: PTVCISFSESFS*DNLEASDAADF
Trigger: GAAGTCCGCTGCATCACTGGCTTCTAAATTATCCAAACTAAAGGATTCTGAAAAAGAGATGCAAACCGTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp GTGATTCTTTACAGCTTTCCTGAAAAAGAGCCAAGTTGTCATCTGTaGCTACAGGTTTGTTCTCTGTCCCGTAACCTGTATTTGTTCTGC +
Preference number: 6 (lower is better)
Translates to: VILYSFPEKEPSCHL*LQVCSLSRNLYLFC
Trigger: GCAGAACAAATACAGGTTACGGGACAGAGAACAAACCTGTAGCAACAGATGACAACTTGGCTCTTTTTCAGGAAAGCTGTAAAGAATCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp TCTGTGTCATCCGTTGTATTGTTAGGATGTAGTTCACTGTTTTTATaGATGGGACCATCCTCTGTGGCAGAATCTGCCATTGGAAGCATA +
Preference number: 6 (lower is better)
Translates to: SVSSVVLLGCSSLFL*MGPSSVAESAIGSI
Trigger: TATGCTTCCAATGGCAGATTCTGCCACAGAGGATGGTCCCATCAATAAAAACAGTGAACTACATCCTAACAATACAACGGATGACACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp AAAAGGCGATCTGTGTGTGATTCTTTACAGCTTTCCTaGAAAAGAGCCAAGTTGTCATCTGTTGCTACAGGT +
Preference number: 6 (lower is better)
Translates to: KRRSVCDSLQLS*KRAKLSSVATG
Trigger: ACCTGTAGCAACAGATGACAACTTGGCTCTTTTTCAGGAAAGCTGTAAAGAATCACACACAGATCGCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp GAAGGTTTCCATATTCACTCTGATGGCCACACATGTTaGTTCAGCATCAATACTGTTAAGGGTAAGTTCTTC +
Preference number: 6 (lower is better)
Translates to: EGFHIHSDGHTC*FSINTVKGKFF
Trigger: GAAGAACTTACCCTTAACAGTATTGATGCTGAAGCAACATGTGTGGCCATCAGAGTGAATATGGAAACCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp ATTAACAGTACTACTTATTGTCTGCATTTCCAGATCTaGCTCTCTCTCCTCAAGGAGGTGATGCATTTGGAT +
Preference number: 6 (lower is better)
Translates to: INSTTYCLHFQI*LSLLKEVMHLD
Trigger: ATCCAAATGCATCACCTCCTTGAGGAGAGAGAGGCAGATCTGGAAATGCAGACAATAAGTAGTACTGTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp GGTTACATCAAAATGCTGCTGCCAATCCATACAGTGTaGGTTTGGTTCATTTTTGGAACAAGATCTTGCCTT +
Preference number: 6 (lower is better)
Translates to: GYIKMLLPIHTV*VWFIFGTRSCL
Trigger: AAGGCAAGATCTTGTTCCAAAAATGAACCAAACGCACACTGTATGGATTGGCAGCAGCATTTTGATGTAACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp TCCCGTAACCTGTATTTGTTCTGCAAAACCTTTTGTTaGGCGGTTGACTGGATTCTTTACTTAAAGTGCTTG +
Preference number: 6 (lower is better)
Translates to: SRNLYLFCKTFC*AVDWILYLKCL
Trigger: CAAGCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAGGTTTTGCAGAACAAATACAGGTTACGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp GTGGCTCTTGTCTTTCAGAAGAACATCGGGTTCATTTaGAGGATCAAGATGAGTCCTGACTTCAGTGTTATT +
Preference number: 6 (lower is better)
Translates to: VALVFQKNIGFI*RIKMSPDFSVI
Trigger: AATAACACTGAAGTCAGGACTCATCTTGATCCTCAAAATGAACCCGATGTTCTTCTGAAAGACAAGAGCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 72 bp TCCGTTGTATTGTTAGGATGTAGTTCACTGTTTTTATaGATGGGACCATCCTCTGTGGCAGAATCTGCCATT +
Preference number: 6 (lower is better)
Translates to: SVVLLGCSSLFL*MGPSSVAESAI
Trigger: AATGGCAGATTCTGCCACAGAGGATGGTCCCATCAATAAAAACAGTGAACTACATCCTAACAATACAACGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CAA 90 bp AGGAGCATCTTTCCATTTCTCCAGTTGACTCGGAATGTCATTATTTaGGGGAATGTTGGCAGCCATGACATTAACAGTACTACTTATTGT +
Preference number: 6 (lower is better)
Translates to: RSIFPFLQLTRNVII*GNVGSHDINSTTYC
Trigger: ACAATAAGTAGTACTGTTAATGTCATGGCTGCCAACATTCCCCAAAATAATGACATTCCGAGTCAACTGGAGAAATGGAAAGATGCTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp CTTGTTAAATCACTGCTGTCTGGAGTCTCAATTGCATaGTGTGTTCTTTTTCCAAATGTTTCTTGGGCACTT +
Preference number: 6 (lower is better)
Translates to: LVKSLLSGVSIA*CVLFPNVSWAL
Trigger: AAGTGCCCAAGAAACATTTGGAAAAAGAACACACCATGCAATTGAGACTCCAGACAGCAGTGATTTAACAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp ACAGTAGTGATCTCACAACCATCAGACATATCTAAGTaGCTCTTGTCTTTCAGAAGAACATCGGGTTCATTT +
Preference number: 6 (lower is better)
Translates to: TVVISQPSDISK*LLSFRRTSGSF
Trigger: AAATGAACCCGATGTTCTTCTGAAAGACAAGAGCCACTTAGATATGTCTGATGGTTGTGAGATCACTACTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS CCA 72 bp ATCAAAATGCTGCTGCCAATCCATACAGTGTGCGTTTaGTTCATTTTTGGAACAAGATCTTGCCTTAGATTC +
Preference number: 6 (lower is better)
Translates to: IKMLLPIHTVCV*FIFGTRSCLRF
Trigger: GAATCTAAGGCAAGATCTTGTTCCAAAAATGAACCAAACGCACACTGTATGGATTGGCAGCAGCATTTTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS GCA 72 bp GTTCACAAACAAAAACTGCATATTCTTATTGTAGTGTaGTTCAGAGCTGATGTAGCCACTGAACTCAAATTC +
Preference number: 6 (lower is better)
Translates to: VHKQKLHILIVV*FRADVATELKF
Trigger: GAATTTGAGTTCAGTGGCTACATCAGCTCTGAAGCACACTACAATAAGAATATGCAGTTTTTGTTTGTGAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2
CDS TCA 72 bp GTTTCAGTTGATTTAGCGTGCTCACTTTGTACTACATaGGTTATAAAGCCAGTGGAGCATAATTTAACTTGT +
Preference number: 6 (lower is better)
Translates to: VSVDLACSLCTT*VIKPVEHNLTC
Trigger: ACAAGTTAAATTATGCTCCACTGGCTTTATAACTCATGTAGTACAAAGTGAGCACGCTAAATCAACTGAAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019378.8
ENSMUST00000166821.8
ENSMUST00000220854.2