Pregenerated sensors for MKRN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029922Ensembl transcript IDs: ENSMUST00000031985.13, ENSMUST00000051671.11, ENSMUST00000114823.8, ENSMUST00000122996.8
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCGCTCGTGCTCGCCCACCAAGTCCATCGACCCTTGGGAGTTAGCTaGCAGCTCTGCGCTGATGGAATGCCACTGCATCCTCCCTGTGTT | + |
|
Preference number: 1 (lower is better) Translates to: SLVLAHQVHRPLGVS*QLCADGMPLHPPCV Trigger: AACACAGGGAGGATGCAGTGGCATTCCATCAGCGCAGAGCTGGCAGCTAACTCCCAAGGGTCGATGGACTTGGTGGGCGAGCACGAGCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR GCA 90 bp | GGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTaGAAACCGACAGATACCTCTAGTACAACCAGCACCTCAGTTTGG | + |
|
Preference number: 1 (lower is better) Translates to: GRTLPFLRWGRVHYF*KPTDTSSTTSTSVW Trigger: CCAAACTGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR CCA 90 bp | ACTTTTGCTTGCCTCGTGGGTGGCCGCACCCTCCCTTTTCTTCGGTaGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGT | + |
|
Preference number: 1 (lower is better) Translates to: TFACLVGGRTLPFLR*GRVHYFCKPTDTSS Trigger: ACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCACCCACGAGGCAAGCAAAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR GCA 90 bp | GACCCTTGGGAGTTAGCTGCCAGCTCTGCGCTGATGGAATGCCACTaGATCCTCCCTGTGTTTTTACATTTTTCTCAGGTTAACCTCAAC | + |
|
Preference number: 1 (lower is better) Translates to: DPWELAASSALMECH*ILPVFLHFSQVNLN Trigger: GTTGAGGTTAACCTGAGAAAAATGTAAAAACACAGGGAGGATGCAGTGGCATTCCATCAGCGCAGAGCTGGCAGCTAACTCCCAAGGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR GCA 90 bp | TCCATCGACCCTTGGGAGTTAGCTGCCAGCTCTGCGCTGATGGAATaGCACTGCATCCTCCCTGTGTTTTTACATTTTTCTCAGGTTAAC | + |
|
Preference number: 1 (lower is better) Translates to: SIDPWELAASSALME*HCILPVFLHFSQVN Trigger: GTTAACCTGAGAAAAATGTAAAAACACAGGGAGGATGCAGTGGCATTCCATCAGCGCAGAGCTGGCAGCTAACTCCCAAGGGTCGATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR TCA 90 bp | GCTTGTACTGAGAGGGGGACAAGCAGGTCGTTTAACCTCTACAGCTaGTCTCGTTTCTCTAGCATACAGACAGACAGCTACTGCTACGTT | + |
|
Preference number: 1 (lower is better) Translates to: ACTERGTSRSFNLYS*SRFSSIQTDSYCYV Trigger: AACGTAGCAGTAGCTGTCTGTCTGTATGCTAGAGAAACGAGATCAGCTGTAGAGGTTAAACGACCTGCTTGTCCCCCTCTCAGTACAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | GGGTGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAGGGACAGCTACTGTCTaGGGCTCCGCAGACCAGTGC | + |
|
Preference number: 2 (lower is better) Translates to: GWPHPPFSSVGKGSLLLQGTATV*GSADQC Trigger: GCACTGGTCTGCGGAGCCTCAGACAGTAGCTGTCCC...TTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGACCCAGCTTGTACTaGGAGGGGGACAAGCAGGTC | + |
|
Preference number: 2 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDRPSLY*EGDKQV Trigger: GACCTGCTTGTCCCCCTCTCAGTACAAGCTGGGTCT...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | TGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCACAGGCCCTGGGAAGTaGTCACAGCACCTGGAGTTT | + |
|
Preference number: 2 (lower is better) Translates to: WPHPPFSSVGKGSLLLQTTGPGK*SQHLEF Trigger: AAACTCCAGGTGCTGTGATCACTTCCCAGGGCCTGT...GGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATGGGAAGGAAGCTaGTCACATGCTCGCTCGTGC | + |
|
Preference number: 2 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDRWEGS*SHARSC Trigger: GCACGAGCGAGCATGTGAGCAGCTTCCTTCCCATCT...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCGAGAGCCACACGCACTaGCACACAGCACAGGGGACA | + |
|
Preference number: 2 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTESHTH*HTAQGT Trigger: TGTCCCCTGTGCTGTGTGGCAGTGCGTGTGGCTCTC...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGTGATCACAGCACCTaGAGTTTGAGAGGCCTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDSDHST*SLRGLP Trigger: AGGCAGGCCTCTCAAACTCCAGGTGCTGTGATCACT...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | GGGTGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCAGCACCTCAGTTTaGAATCCACCTGTCTTCCTG | + |
|
Preference number: 2 (lower is better) Translates to: GWPHPPFSSVGKGSLLLQTSTSV*NPPVFL Trigger: CAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGT...TTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | GGGTGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAACAGTGCTTTTTCCTTTaGACCTCAAAGGGGTCTCAG | + |
|
Preference number: 2 (lower is better) Translates to: GWPHPPFSSVGKGSLLLQQCFFL*TSKGSQ Trigger: CTGAGACCCCTTTGAGGTTCAAAGGAAAAAGCACTG...TTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | CCTCTAGTACAACCAGCACCTCAGTTTGGAATCCACCTGTCTTCCTGTCAAAGCAGACCCAGCTTGTACTaGGAGGGGGACAAGCAGGTC | + |
|
Preference number: 2 (lower is better) Translates to: PLVQPAPQFGIHLSSCQSRPSLY*EGDKQV Trigger: GACCTGCTTGTCCCCCTCTCAGTACAAGCTGGGTCT...GCTTTGACAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGTTGTACTAGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACGCACCTATGCACAGATaGGAAGGAAGCTGCTCACAT | + |
|
Preference number: 2 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDAPMHR*EGSCSH Trigger: ATGTGAGCAGCTTCCTTCCCATCTGTGCATAGGTGC...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACCAGTGCTTTTTCCTTTaGACCTCAAAGGGGTCTCAG | + |
|
Preference number: 2 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDQCFFL*TSKGSQ Trigger: CTGAGACCCCTTTGAGGTTCAAAGGAAAAAGCACTG...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | AGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCACCTCAGAGAGCCACACGCACTaGCACACAGCACAGGGGACA | + |
|
Preference number: 2 (lower is better) Translates to: RVHYFCKPTDTSSTTSTSESHTH*HTAQGT Trigger: TGTCCCCTGTGCTGTGTGGCAGTGCGTGTGGCTCTC...TGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | TCCAAGACCCAGCTTGTACTGAGAGGGGGACAAGCAGGTCGTTTAACCTCTACATCCATGAACACAACCTaGCTGAGGACAGATGGCGCA | + |
|
Preference number: 2 (lower is better) Translates to: SKTQLVLRGGQAGRLTSTSMNTT*LRTDGA Trigger: TGCGCCATCTGTCCTCAGCCAGGTTGTGTTCATGGA...TGTAGAGGTTAAACGACCTGCTTGTCCCCCTCTCAGTACAAGCTGGGTCTTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | TGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCAAAGGGGTCTCAGAATaGGTGTGCAAAGTCCATGAA | + |
|
Preference number: 2 (lower is better) Translates to: WPHPPFSSVGKGSLLLQTKGVSE*VCKVHE Trigger: TTCATGGACTTTGCACACTCATTCTGAGACCCCTTT...GGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | TGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCCTGATGGAATGCCACTaGATCCTCCCTGTGTTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: WPHPPFSSVGKGSLLLQTLMECH*ILPVFL Trigger: TAAAAACACAGGGAGGATGCAGTGGCATTCCATCAG...GGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGTGATCACAGCACCTaGAGTTTGAGAGGCCTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTSDHST*SLRGLP Trigger: AGGCAGGCCTCTCAAACTCCAGGTGCTGTGATCACT...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | CCTCTAGTACAACCAGCACCTCAGTTTGGAATCCACCTGTCTTCCTGTCAAAGCAAGTCCATCGACCCTTaGGAGTTAGCTGCCAGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: PLVQPAPQFGIHLSSCQSKSIDP*ELAASS Trigger: AGAGCTGGCAGCTAACTCCCAAGGGTCGATGGACTT...GCTTTGACAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGTTGTACTAGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | TCCAAGACCCAGCTTGTACTGAGAGGGGGACAAGCAGGTCGTTTAACCTCTACAGCACCTATGCACAGATaGGAAGGAAGCTGCTCACAT | + |
|
Preference number: 2 (lower is better) Translates to: SKTQLVLRGGQAGRLTSTAPMHR*EGSCSH Trigger: ATGTGAGCAGCTTCCTTCCCATCTGTGCATAGGTGC...TGTAGAGGTTAAACGACCTGCTTGTCCCCCTCTCAGTACAAGCTGGGTCTTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | AGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCACCTCAACAGGCCCTGGGAAGTaGTCACAGCACCTGGAGTTT | + |
|
Preference number: 2 (lower is better) Translates to: RVHYFCKPTDTSSTTSTSTGPGK*SQHLEF Trigger: AAACTCCAGGTGCTGTGATCACTTCCCAGGGCCTGT...TGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | TGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCTACGTTAACAACTACTaGCATACTGCTTGGTCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: WPHPPFSSVGKGSLLLQTYVNNY*HTAWSF Trigger: AAAGGACCAAGCAGTATGTCAGTAGTTGTTAACGTA...GGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACTTTAACCTCTACAGCTaGTCTCGTTTCTCTAGCATA | + |
|
Preference number: 2 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDFNLYS*SRFSSI Trigger: TATGCTAGAGAAACGAGATCAGCTGTAGAGGTTAAA...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | TCCAAGACCCAGCTTGTACTGAGAGGGGGACAAGCAGGTCGTTTAACCTCTACACTGATGGAATGCCACTaGATCCTCCCTGTGTTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: SKTQLVLRGGQAGRLTSTLMECH*ILPVFL Trigger: TAAAAACACAGGGAGGATGCAGTGGCATTCCATCAG...TGTAGAGGTTAAACGACCTGCTTGTCCCCCTCTCAGTACAAGCTGGGTCTTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | AGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCACCTCATCCATGAACACAACCTaGCTGAGGACAGATGGCGCA | + |
|
Preference number: 2 (lower is better) Translates to: RVHYFCKPTDTSSTTSTSSMNTT*LRTDGA Trigger: TGCGCCATCTGTCCTCAGCCAGGTTGTGTTCATGGA...TGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | CCTCTAGTACAACCAGCACCTCAGTTTGGAATCCACCTGTCTTCCTGTCAAAGCAATTGCCCCTATCCTTaGACCCCAAAGCAATCAGTG | + |
|
Preference number: 2 (lower is better) Translates to: PLVQPAPQFGIHLSSCQSNCPYP*TPKQSV Trigger: CACTGATTGCTTTGGGGTCCAAGGATAGGGGCAATT...GCTTTGACAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGTTGTACTAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAAAGGGGTCTCAGAATaGGTGTGCAAAGTCCATGAA | + |
|
Preference number: 2 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTKGVSE*VCKVHE Trigger: TTCATGGACTTTGCACACTCATTCTGAGACCCCTTT...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGAATACTGCACCTATaGACAGATGGGAAGGAAGCT | + |
|
Preference number: 2 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTRILHL*TDGKEA Trigger: AGCTTCCTTCCCATCTGTGCATAGGTGCAGTATTCT...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR GCA 90 bp | AGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCACCTCAAGAATACTGCACCTATaGACAGATGGGAAGGAAGCT | + |
|
Preference number: 2 (lower is better) Translates to: RVHYFCKPTDTSSTTSTSRILHL*TDGKEA Trigger: AGCTTCCTTCCCATCTGTGCATAGGTGCAGTATTCT...TGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR TCA 90 bp | AGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCACCTCATACGTTAACAACTACTaGCATACTGCTTGGTCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: RVHYFCKPTDTSSTTSTSYVNNY*HTAWSF Trigger: AAAGGACCAAGCAGTATGTCAGTAGTTGTTAACGTA...TGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CCA 90 bp | ACCAAGAAACATACATTCAGAGCTAGATGTTTGTTCAGGAAGCCTAAACTGTCTTGTGGTCGTTCTGGTTaGAGGTTGGCACAAGATACT | + |
|
Preference number: 2 (lower is better) Translates to: TKKHTFRARCLFRKPKLSCGRSG*RLAQDT Trigger: AGTATCTTGTGCCAACCTCCAACCAGAACGACCACA...AGACAGTTTAGGCTTCCTGAACAAACATCTAGCTCTGAATGTATGTTTCTTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR-3UTR CCA 90 bp | ATACATTCAGAGCTAGATGTTTGTTCAGGAAGCCTAAACTGTCTATCTAATCCATGTGGTCGTTCTGGTTaGAGGTTGGCACAAGATACT | + |
|
Preference number: 2 (lower is better) Translates to: IHSELDVCSGSLNCLSNPCGRSG*RLAQDT Trigger: AGTATCTTGTGCCAACCTCCAACCAGAACGACCACA...TGGATTAGATAGACAGTTTAGGCTTCCTGAACAAACATCTAGCTCTGAATGTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR CAA 90 bp | CATGATAAAATACATGCATTTAAATGTGGTCGTTCTGGTTGGAGGTaGGCACAAGATACTAAACTCTTCCCGAAAATAGAAAGCACAAAC | + |
|
Preference number: 2 (lower is better) Translates to: HDKIHAFKCGRSGWR*AQDTKLFPKIESTN Trigger: GTTTGTGCTTTCTATTTTCGGGAAGAGTTTAGTATCTTGTGCCAACCTCCAACCAGAACGACCACATTTAAATGCATGTATTTTATCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR GCA 72 bp | CTCGCCCACCAAGTCCATCGACCCTTGGGAGTTAGCTaGCAGCTCTGCGCTGATGGAATGCCACTGCATCCT | + |
|
Preference number: 3 (lower is better) Translates to: LAHQVHRPLGVS*QLCADGMPLHP Trigger: AGGATGCAGTGGCATTCCATCAGCGCAGAGCTGGCAGCTAACTCCCAAGGGTCGATGGACTTGGTGGGCGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR GCA 72 bp | CACAGATGGGAAGGAAGCTGCTCACATGCTCGCTCGTaGTCGCCCACCAAGTCCATCGACCCTTGGGAGTTA | + |
|
Preference number: 3 (lower is better) Translates to: HRWEGSCSHARS*SPTKSIDPWEL Trigger: TAACTCCCAAGGGTCGATGGACTTGGTGGGCGAGCACGAGCGAGCATGTGAGCAGCTTCCTTCCCATCTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCCAATTGCCCCTATCCTaGGACCCCAAAGCAATCAGT | + |
|
Preference number: 3 (lower is better) Translates to: WPHPPFSSVGKGSLLLQTQLPLS*DPKAIS Trigger: ACTGATTGCTTTGGGGTCCAAGGATAGGGGCAATTG...GGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CAA 90 bp | CCTCTAGTACAACCAGCACCTCAGTTTGGAATCCACCTGTCTTCCTGTCAAAGCCAAGTCCATCGACCCTaGGGAGTTAGCTGCCAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: PLVQPAPQFGIHLSSCQSQVHRP*GVSCQL Trigger: GAGCTGGCAGCTAACTCCCAAGGGTCGATGGACTTG...GCTTTGACAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGTTGTACTAGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CAA 90 bp | GGGTGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAATCAGTGCTTTTTCCTTaGAACCTCAAAGGGGTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: GWPHPPFSSVGKGSLLLQSVLFP*NLKGVS Trigger: TGAGACCCCTTTGAGGTTCAAAGGAAAAAGCACTGA...TTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CAA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACTCAGTGCTTTTTCCTTaGAACCTCAAAGGGGTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDSVLFP*NLKGVS Trigger: TGAGACCCCTTTGAGGTTCAAAGGAAAAAGCACTGA...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CAA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCCAATTGCCCCTATCCTaGGACCCCAAAGCAATCAGT | + |
|
Preference number: 3 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTQLPLS*DPKAIS Trigger: ACTGATTGCTTTGGGGTCCAAGGATAGGGGCAATTG...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR GCA 72 bp | CTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTaGAAACCGACAGATACCTCTAGTACAACCAGCACC | + |
|
Preference number: 3 (lower is better) Translates to: LPFLRWGRVHYF*KPTDTSSTTST Trigger: GGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR CCA 72 bp | CCGACAGATACCTCTAGTACAACCAGCACCTCAGTTTaGAATCCACCTGTCTTCCTGTCAAAGCTCAGGGAT | + |
|
Preference number: 3 (lower is better) Translates to: PTDTSSTTSTSV*NPPVFLSKLRD Trigger: ATCCCTGAGCTTTGACAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGTTGTACTAGAGGTATCTGTCGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| 3UTR-3UTR CAA 90 bp | ACCAAGAAACATACATTCAGAGCTAGATGTTTGTTCAGGAAGCCTAAACTGTCTCGTTCTGGTTGGAGGTaGGCACAAGATACTAAACTC | + |
|
Preference number: 3 (lower is better) Translates to: TKKHTFRARCLFRKPKLSRSGWR*AQDTKL Trigger: GAGTTTAGTATCTTGTGCCAACCTCCAACCAGAACG...AGACAGTTTAGGCTTCCTGAACAAACATCTAGCTCTGAATGTATGTTTCTTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR-3UTR CAA 90 bp | ATACATTCAGAGCTAGATGTTTGTTCAGGAAGCCTAAACTGTCTATCTAATCCACGTTCTGGTTGGAGGTaGGCACAAGATACTAAACTC | + |
|
Preference number: 3 (lower is better) Translates to: IHSELDVCSGSLNCLSNPRSGWR*AQDTKL Trigger: GAGTTTAGTATCTTGTGCCAACCTCCAACCAGAACG...TGGATTAGATAGACAGTTTAGGCTTCCTGAACAAACATCTAGCTCTGAATGTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR TCA 72 bp | AATAAAATAGACAGACCAACTAACCTAGCGGCTAGCTaGAGTACAAAGAAATCCCAATTAGAACACCCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: NKIDRPTNLAAS*STKKSQLEHPG Trigger: ACCTGGGTGTTCTAATTGGGATTTCTTTGTACTTCAGCTAGCCGCTAGGTTAGTTGGTCTGTCTATTTTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR CAA 72 bp | TGCTCGCTCGTGCTCGCCCACCAAGTCCATCGACCCTaGGGAGTTAGCTGCCAGCTCTGCGCTGATGGAATG | + |
|
Preference number: 4 (lower is better) Translates to: CSLVLAHQVHRP*GVSCQLCADGM Trigger: CATTCCATCAGCGCAGAGCTGGCAGCTAACTCCCAAGGGTCGATGGACTTGGTGGGCGAGCACGAGCGAGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR TCA 90 bp | CCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACACCAGAAGAGAGACTTaGGGAAGCAGCGAGGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: PHPPFSSVGKGSLLLQTDTRRET*GSSEGW Trigger: CCATCCCTCGCTGCTTCCTCAAGTCTCTCTTCTGGT...GTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR GCA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCGCGGGGGTACTTCAGTaGAGGAAGGGGCAGTACGGC | + |
|
Preference number: 4 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTAGVLQ*RKGQYG Trigger: GCCGTACTGCCCCTTCCTGCACTGAAGTACCCCCGC...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR CCA 90 bp | TGGCCGCACCCTCCCTTTTCTTCGGTGGGGAAGGGTTCATTACTTCTGCAAACCTCTCTGACTCTTCCTTaGTCACTGAACCCTGCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: WPHPPFSSVGKGSLLLQTSLTLP*SLNPAG Trigger: CCCCGCAGGGTTCAGTGACCAAGGAAGAGTCAGAGA...GGTTTGCAGAAGTAATGAACCCTTCCCCACCGAAGAAAAGGGAGGGTGCGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR TCA 90 bp | CCTCTAGTACAACCAGCACCTCAGTTTGGAATCCACCTGTCTTCCTGTCAAAGCACCAGAAGAGAGACTTaGGGAAGCAGCGAGGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: PLVQPAPQFGIHLSSCQSTRRET*GSSEGW Trigger: CCATCCCTCGCTGCTTCCTCAAGTCTCTCTTCTGGT...GCTTTGACAGGAAGACAGGTGGATTCCAAACTGAGGTGCTGGTTGTACTAGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR GCA 90 bp | CGGTGGGGAAGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCGAGGGATGGTTTTaGACTCAGATCAGTAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: RWGRVHYFCKPTDTSSTTSEGWF*TQISSS Trigger: ACTGCTACTGATCTGAGTGCAAAACCATCCCTCGCT...GGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCTTCCCCACCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR GCA 90 bp | AGGGTTCATTACTTCTGCAAACCGACAGATACCTCTAGTACAACCAGCACCTCAAGCGAGGGATGGTTTTaGACTCAGATCAGTAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: RVHYFCKPTDTSSTTSTSSEGWF*TQISSS Trigger: ACTGCTACTGATCTGAGTGCAAAACCATCCCTCGCT...TGAGGTGCTGGTTGTACTAGAGGTATCTGTCGGTTTGCAGAAGTAATGAACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031985.13 ENSMUST00000114823.8 |
||
| CDS-3UTR TCA 90 bp | TGTAAGACACCAAGAAACATACATTCAGAGCTAGATGTTTGTTCAGGAAGCCTAACCAGAAGAGAGACTTaGGGAAGCAGCGAGGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: CKTPRNIHSELDVCSGSLTRRET*GSSEGW Trigger: CCATCCCTCGCTGCTTCCTCAAGTCTCTCTTCTGGT...TAGGCTTCCTGAACAAACATCTAGCTCTGAATGTATGTTTCTTGGTGTCTTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| CDS-3UTR CCA 90 bp | TGTAAGACACCAAGAAACATACATTCAGAGCTAGATGTTTGTTCAGGAAGCCTATCTCTGACTCTTCCTTaGTCACTGAACCCTGCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: CKTPRNIHSELDVCSGSLSLTLP*SLNPAG Trigger: CCCCGCAGGGTTCAGTGACCAAGGAAGAGTCAGAGA...TAGGCTTCCTGAACAAACATCTAGCTCTGAATGTATGTTTCTTGGTGTCTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| CDS-3UTR TCA 90 bp | TCAGGAAGCCTAAACTGTCTATCTAATCCATTAACACAATCTCCTCAAAAAGCAACCAGAAGAGAGACTTaGGGAAGCAGCGAGGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: SGSLNCLSNPLTQSPQKATRRET*GSSEGW Trigger: CCATCCCTCGCTGCTTCCTCAAGTCTCTCTTCTGGT...TGCTTTTTGAGGAGATTGTGTTAATGGATTAGATAGACAGTTTAGGCTTCCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| CDS-3UTR GCA 90 bp | AAAATACATGCATTTAAATGTGGTCGTTCTGGTTGGAGGTTGGCACAAGATACTAGCGAGGGATGGTTTTaGACTCAGATCAGTAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: KIHAFKCGRSGWRLAQDTSEGWF*TQISSS Trigger: ACTGCTACTGATCTGAGTGCAAAACCATCCCTCGCT...AGTATCTTGTGCCAACCTCCAACCAGAACGACCACATTTAAATGCATGTATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| CDS-3UTR GCA 90 bp | TCAGGAAGCCTAAACTGTCTATCTAATCCATTAACACAATCTCCTCAAAAAGCAAGCGAGGGATGGTTTTaGACTCAGATCAGTAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: SGSLNCLSNPLTQSPQKASEGWF*TQISSS Trigger: ACTGCTACTGATCTGAGTGCAAAACCATCCCTCGCT...TGCTTTTTGAGGAGATTGTGTTAATGGATTAGATAGACAGTTTAGGCTTCCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| 3UTR CAA 72 bp | ATACATGCATTTAAATGTGGTCGTTCTGGTTGGAGGTaGGCACAAGATACTAAACTCTTCCCGAAAATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IHAFKCGRSGWR*AQDTKLFPKIE Trigger: TTCTATTTTCGGGAAGAGTTTAGTATCTTGTGCCAACCTCCAACCAGAACGACCACATTTAAATGCATGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051671.11 ENSMUST00000122996.8 |
||
| CDS TCA 90 bp | CCAGGGCGGGGACACCGGTCCTCTCCGCACGCACCGGGGCGCCGCTaGGCGAGGCGAGGTGACGGGACCGCCCTGCAGTCCGAGCCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: PGRGHRSSPHAPGRR*ARRGDGTALQSEPA Trigger: TGCGGGCTCGGACTGCAGGGCGGTCCCGTCACCTCGCCTCGCTCAGCGGCGCCCCGGTGCGTGCGGAGAGGACCGGTGTCCCCGCCCTGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122996.8 |
||