Pregenerated sensors for MIXL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026497Ensembl transcript IDs: ENSMUST00000027778.8
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTaGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATG | + |
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Preference number: 1 (lower is better) Translates to: SQKDNLKKPVLPSTM*VLGIKLRLSGLVVM Trigger: CATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR TCA 90 bp | ACTAGGACTACAAGAAGACAGCAGCTGCCGAGAAAGTGGGGAAACTaGGTCAAGCCGAAGGTTCTTATGAAGAAAACAAGTTCTGAACAA | + |
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Preference number: 1 (lower is better) Translates to: TRTTRRQQLPRKWGN*VKPKVLMKKTSSEQ Trigger: TTGTTCAGAACTTGTTTTCTTCATAAGAACCTTCGGCTTGACTCAGTTTCCCCACTTTCTCGGCAGCTGCTGTCTTCTTGTAGTCCTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR CCA 90 bp | TTTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATaGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCAC | + |
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Preference number: 1 (lower is better) Translates to: FCMCVLMWVHTIPHI*KSKRQLKETRSPIH Trigger: GTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | CATGTGGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTCTGGGAGAGAGAAGCTaGAAAACTCGATGGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: HVGLGDQTQVVRPGGHVSLGERS*KTRWRW Trigger: CCATCTCCATCGAGTTTTTCAGCTTCTCTCTCCCAG...AGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR GCA 90 bp | GATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGCCTCCACTGAGCCAAGAAGGCCCAGGGGATaGGGACCAAATTATAATGTG | + |
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Preference number: 2 (lower is better) Translates to: DQTQVVRPGGHVSASTEPRRPRG*GPNYNV Trigger: CACATTATAATTTGGTCCGCATCCCCTGGGCCTTCT...TGGCTCAGTGGAGGCAGACACATGACCACCAGGCCTGACAACCTGAGTTTGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | GATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGCCTCCACTGAGCCAAAGGGAACCAAAATGTaGGAGATGATCCAGAACCGA | + |
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Preference number: 2 (lower is better) Translates to: DQTQVVRPGGHVSASTEPKGTKM*EMIQNR Trigger: TCGGTTCTGGATCATCTCTCACATTTTGGTTCCCTT...TGGCTCAGTGGAGGCAGACACATGACCACCAGGCCTGACAACCTGAGTTTGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR GCA 90 bp | GTCCAGAGTACAGGATGTGGGATAGAGTGTGTGAACCCACTTACAACTAGGACTCCAGATCTCCCTGAGTaGATCCTCAACGCTCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: VQSTGCGIECVNPLTTRTPDLPE*ILNAPR Trigger: TCTGGGAGCGTTGAGGATGCACTCAGGGAGATCTGG...AGTCCTAGTTGTAAGTGGGTTCACACACTCTATCCCACATCCTGTACTCTGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR CAA 90 bp | AAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGGGTCTaGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: KDNLKKPVLPSTMWV*GIKLRLSGLVVMCL Trigger: CAGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR GCA 90 bp | TTAAAGAAACCCGTTCTCCCATCCACCATGTGGGTCTTGGGGATCAAACTCAGGCAAGAAGACAGCAGCTaGCGAGAAAGTGGGGAAACT | + |
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Preference number: 2 (lower is better) Translates to: LKKPVLPSTMWVLGIKLRQEDSS*RESGET Trigger: AGTTTCCCCACTTTCTCGGCAGCTGCTGTCTTCTTG...CCTGAGTTTGATCCCCAAGACCCACATGGTGGATGGGAGAACGGGTTTCTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CCA 90 bp | CATGTGGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGGATACACAGTCAGCTaGGAGAGAGAAGCTGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: HVGLGDQTQVVRPGGHVSGYTVS*EREAEK Trigger: TTTTTCAGCTTCTCTCTCCCAGCTGACTGTGTATCC...AGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | CATGTGGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGAGAAACTTTTTCACTaGGTCCCAACCAGAAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: HVGLGDQTQVVRPGGHVSEKLFH*VPTRKE Trigger: TTCCTTTCTGGTTGGGACTCAGTGAAAAAGTTTCTC...AGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | ATATGGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGGAGAAACCAGTCAAGTaGGGGCAGGGGAGGTGGCTA | + |
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Preference number: 2 (lower is better) Translates to: IWKSKRQLKETRSPIHHVEKPVK*GQGRWL Trigger: TAGCCACCTCCCCTGCCCTCACTTGACTGGTTTCTC...CACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CCA 90 bp | TTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAACCAGAACCGAGGCCATaGCCAGTCAGGAGATCAGCT | + |
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Preference number: 2 (lower is better) Translates to: FVCVYLCGCTPYHTYGSQPEPRP*PVRRSA Trigger: AGCTGATCTCCTGACTGGCCATGGCCTCGGTTCTGG...TTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CCA 90 bp | TTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAGGTTGTCAGGCCTGGTaGTCATGTGTCTGCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: FVCVYLCGCTPYHTYGSQGCQAW*SCVCLH Trigger: GTGGAGGCAGACACATGACCACCAGGCCTGACAACC...TTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | TTATGTGGGTGCACACCATACCACACATATGGAAGTCAAAAAGACAACTTAAAGCAACTTTCCCAGCACTaGGGTCTGGGACAACAGGGT | + |
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Preference number: 2 (lower is better) Translates to: LCGCTPYHTYGSQKDNLKQLSQH*GLGQQG Trigger: ACCCTGTTGTCCCAGACCTCAGTGCTGGGAAAGTTG...CTTTAAGTTGTCTTTTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | TTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAACCAAAATGTGAGAGATaGTCCAGAACCGAGGCCATG | + |
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Preference number: 2 (lower is better) Translates to: LYVCTYVGAHHTTHMEVKPKCER*SRTEAM Trigger: CATGGCCTCGGTTCTGGATCATCTCTCACATTTTGG...TTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | ATATGGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGAGAAAGTGGGGAAACTaGGTCAAGCCGAAGGTTCTT | + |
|
Preference number: 2 (lower is better) Translates to: IWKSKRQLKETRSPIHHVRKWGN*VKPKVL Trigger: AAGAACCTTCGGCTTGACTCAGTTTCCCCACTTTCT...CACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | ATATGGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGAGGAGGACAGGAGTTTaGGGCATCTTTCCTTCCTTA | + |
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Preference number: 2 (lower is better) Translates to: IWKSKRQLKETRSPIHHVRRTGV*GIFPSL Trigger: TAAGGAAGGAAAGATGCCTCAAACTCCTGTCCTCCT...CACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | TTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAACCAACCAGAAAGGAATaGCAGACAGAGAAGCACATT | + |
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Preference number: 2 (lower is better) Translates to: FVCVYLCGCTPYHTYGSQPTRKE*QTEKHI Trigger: AATGTGCTTCTCTGTCTGTCATTCCTTTCTGGTTGG...TTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR GCA 90 bp | TTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAATGGTTAACTGGAAGCTaGCACAGACTTCCAAATGGA | + |
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Preference number: 2 (lower is better) Translates to: LYVCTYVGAHHTTHMEVKWLTGS*HRLPNG Trigger: TCCATTTGGAAGTCTGTGGCAGCTTCCAGTTAACCA...TTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | ATATGGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGAGGGAAGCTGTTTCCTaGGCTGTTTTGAAAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: IWKSKRQLKETRSPIHHVREAVS*AVLKEK Trigger: TTTCTCTTTCAAAACAGCTCAGGAAACAGCTTCCCT...CACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CCA 90 bp | TTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAAAGCAGCATCCAGTTATaGTGGCAAATAAAGCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: LYVCTYVGAHHTTHMEVKSSIQL*WQIKLG Trigger: TCCTAGCTTTATTTGCCACCATAACTGGATGCTGCT...TTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CCA 90 bp | CTATTTATTTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGCAGGGTCTTACAGTTTaGTTAACTGGAAGCTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: LFILYVCTYVGAHHTTHMQGLTV*LTGSCH Trigger: GTGGCAGCTTCCAGTTAACCAAACTGTAAGACCCTG...CATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAAATAAATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR TCA 90 bp | TTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAAAGCCGAAGGTTCTTATaGAGAAAACAAGTTCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: LYVCTYVGAHHTTHMEVKSRRFL*RKQVLN Trigger: GTTCAGAACTTGTTTTCTTCATAAGAACCTTCGGCT...TTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR CCA 72 bp | CCCAGGGGATGCGGACCAAATTATAATGTGCAGTCTTaGAGAGTCACGGTGACTTTTCGGTGGCTACCGAGA | + |
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Preference number: 3 (lower is better) Translates to: PRGCGPNYNVQS*RVTVTFRWLPR Trigger: TCTCGGTAGCCACCGAAAAGTCACCGTGACTCTCCAAGACTGCACATTATAATTTGGTCCGCATCCCCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR GCA 72 bp | ACCCACTTACAACTAGGACTACAAGAAGACAGCAGCTaGCGAGAAAGTGGGGAAACTGAGTCAAGCCGAAGG | + |
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Preference number: 3 (lower is better) Translates to: THLQLGLQEDSS*RESGETESSRR Trigger: CCTTCGGCTTGACTCAGTTTCCCCACTTTCTCGGCAGCTGCTGTCTTCTTGTAGTCCTAGTTGTAAGTGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR CCA 72 bp | AACCAAAATGTGAGAGATGATCCAGAACCGAGGCCATaGCCAGTCAGGAGATCAGCTCCAATCTCCCAGATC | + |
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Preference number: 3 (lower is better) Translates to: NQNVRDDPEPRP*PVRRSAPISQI Trigger: GATCTGGGAGATTGGAGCTGATCTCCTGACTGGCCATGGCCTCGGTTCTGGATCATCTCTCACATTTTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR TCA 72 bp | AGTAAAGGCTCAGTGTCAGAGAAGGGAACCAAAATGTaGGAGATGATCCAGAACCGAGGCCATGGCCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SKGSVSEKGTKM*EMIQNRGHGQS Trigger: TGACTGGCCATGGCCTCGGTTCTGGATCATCTCTCACATTTTGGTTCCCTTCTCTGACACTGAGCCTTTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR CCA 72 bp | CATTGTGTACTCCCCAACTTTCCCAGCACTGAGGTCTaGGACAACAGGGTTCAATTCAAAACAGAGCTCACT | + |
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Preference number: 3 (lower is better) Translates to: HCVLPNFPSTEV*DNRVQFKTELT Trigger: AGTGAGCTCTGTTTTGAATTGAACCCTGTTGTCCCAGACCTCAGTGCTGGGAAAGTTGGGGAGTACACAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CAA 90 bp | TTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAAGAGGCATGGGGCTCTaGAAAGAGCTGGAAAGTAGC | + |
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Preference number: 3 (lower is better) Translates to: FVCVYLCGCTPYHTYGSQRGMGL*KELESS Trigger: GCTACTTTCCAGCTCTTTCAAGAGCCCCATGCCTCT...TTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR TCA 72 bp | ACAAGAAGACAGCAGCTGCCGAGAAAGTGGGGAAACTaGGTCAAGCCGAAGGTTCTTATGAAGAAAACAAGT | + |
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Preference number: 3 (lower is better) Translates to: TRRQQLPRKWGN*VKPKVLMKKTS Trigger: ACTTGTTTTCTTCATAAGAACCTTCGGCTTGACTCAGTTTCCCCACTTTCTCGGCAGCTGCTGTCTTCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CAA 90 bp | CTATTTATTTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGGGATCAAACTCAGGTaGTCAGGCCTGGTGGTCATG | + |
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Preference number: 3 (lower is better) Translates to: LFILYVCTYVGAHHTTHMGIKLR*SGLVVM Trigger: CATGACCACCAGGCCTGACAACCTGAGTTTGATCCC...CATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAAATAAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR TCA 72 bp | AGGCTTCAGAAAGGGAAGCTGTTTCCTGAGCTGTTTTaGAAGAGAAACTTTTTCACTGAGTCCCAACCAGAA | + |
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Preference number: 3 (lower is better) Translates to: RLQKGKLFPELF*KRNFFTESQPE Trigger: TTCTGGTTGGGACTCAGTGAAAAAGTTTCTCTTTCAAAACAGCTCAGGAAACAGCTTCCCTTTCTGAAGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAATGACAGACAGAGAAGCACATTTTGGGTAAATGATCTTAAGGTTTGCATAACAGGGTCTTACAGTTaGGTTAACTGGAAGCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: RNDRQRSTFWVNDLKVCITGSYS*VNWKLP Trigger: TGGCAGCTTCCAGTTAACCAAACTGTAAGACCCTGT...TATGCAAACCTTAAGATCATTTACCCAAAATGTGCTTCTCTGTCTGTCATTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CAA 90 bp | ATATGGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGATGTTTTCTCATTCATaGTGTACTCCCCAACTTTCC | + |
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Preference number: 3 (lower is better) Translates to: IWKSKRQLKETRSPIHHVMFSHS*CTPQLS Trigger: GGAAAGTTGGGGAGTACACAATGAATGAGAAAACAT...CACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR-3UTR CAA 90 bp | CTATTTATTTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGAGTAACCCACTAATGTaGCACAGGAAACATAATAAC | + |
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Preference number: 3 (lower is better) Translates to: LFILYVCTYVGAHHTTHMSNPLM*HRKHNN Trigger: GTTATTATGTTTCCTGTGCAACATTAGTGGGTTACT...CATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAAATAAATAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR TCA 72 bp | AGTCAAGCCGAAGGTTCTTATGAAGAAAACAAGTTCTaGACAATCAGTCTGAAAAATAGGAATAACCCTAGT | + |
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Preference number: 3 (lower is better) Translates to: SQAEGSYEENKF*TISLKNRNNPS Trigger: ACTAGGGTTATTCCTATTTTTCAGACTGATTGTTCAGAACTTGTTTTCTTCATAAGAACCTTCGGCTTGACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR TCA 90 bp | CAGGGGAGGTGGCTAGGATACACAGTCAGCTGGGAGAGAGAAGCTGAAAAACTCACTCGGGTAGCAGCGTaGGCGCAGCCAGGCGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: QGRWLGYTVSWEREAEKLTRVAA*AQPGAP Trigger: GGGAGCGCCTGGCTGCGCTCACGCTGCTACCCGAGT...GAGTTTTTCAGCTTCTCTCTCCCAGCTGACTGTGTATCCTAGCCACCTCCCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | CAGGGGAGGTGGCTAGGATACACAGTCAGCTGGGAGAGAGAAGCTGAAAAACTCAGCTGCCCTCCGGGATaGGCGGCGGGGAAGATGGGG | + |
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Preference number: 4 (lower is better) Translates to: QGRWLGYTVSWEREAEKLSCPPG*AAGKMG Trigger: CCCCATCTTCCCCGCCGCGCATCCCGGAGGGCAGCT...GAGTTTTTCAGCTTCTCTCTCCCAGCTGACTGTGTATCCTAGCCACCTCCCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | CATGTGGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTAGGCCGGCGGGGGTCTaGGCTGTGGGACTGGAGTCG | + |
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Preference number: 4 (lower is better) Translates to: HVGLGDQTQVVRPGGHVSRPAGV*AVGLES Trigger: CGACTCCAGTCCCACAGCGCAGACCCCCGCCGGCCT...AGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | GTCTTGGTGATGAGTCCAGAGTACAGGATGTGGGATAGAGTGTGTGAACCCACTGGCTGGGCGCATGGCTaGGAGCAGCTGCCCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: VLVMSPEYRMWDRVCEPTGWAHG*EQLPSG Trigger: CCCGGAGGGCAGCTGCTCCCAGCCATGCGCCCAGCC...AGTGGGTTCACACACTCTATCCCACATCCTGTACTCTGGACTCATCACCAAGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | GATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGCCTCCACTGAGCCAGAAAGCGGCGCCTTCTaGGAACTGGAGCTGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: DQTQVVRPGGHVSASTEPESGAF*ELELLG Trigger: TCCCAGCAGCTCCAGTTCGCAGAAGGCGCCGCTTTC...TGGCTCAGTGGAGGCAGACACATGACCACCAGGCCTGACAACCTGAGTTTGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | CATGTGGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTCGGTTTGGAAAGCACTaGGTGGCTGCTGGGGCGCGA | + |
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Preference number: 4 (lower is better) Translates to: HVGLGDQTQVVRPGGHVSRFGKH*VAAGAR Trigger: TCGCGCCCCAGCAGCCACGCAGTGCTTTCCAAACCG...AGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | GATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGCCTCCACTGAGCCATTGGAAAGCACTGCGTaGCTGCTGGGGCGCGAGAGT | + |
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Preference number: 4 (lower is better) Translates to: DQTQVVRPGGHVSASTEPLESTA*LLGRES Trigger: ACTCTCGCGCCCCAGCAGCCACGCAGTGCTTTCCAA...TGGCTCAGTGGAGGCAGACACATGACCACCAGGCCTGACAACCTGAGTTTGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | GTCCAGAGTACAGGATGTGGGATAGAGTGTGTGAACCCACTTACAACTAGGACTGGGCGGCCGAGCCTTTaGAGGGTCCGGGCGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: VQSTGCGIECVNPLTTRTGRPSL*RVRADP Trigger: TGGATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCC...AGTCCTAGTTGTAAGTGGGTTCACACACTCTATCCCACATCCTGTACTCTGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR TCA 90 bp | CATGTGGGTCTTGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGCCTCCAGGGGCAGCTaGGGCTTCAAACACCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: HVGLGDQTQVVRPGGHVSASRGS*GFKHLA Trigger: AGCTAGGTGTTTGAAGCCTCAGCTGCCCCTGGAGGC...AGACACATGACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | CAGGGGAGGTGGCTAGGATACACAGTCAGCTGGGAGAGAGAAGCTGAAAAACTCCTGGGATCCGGAACGTaGTTCACATCTGCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QGRWLGYTVSWEREAEKLLGSGT*FTSASR Trigger: CCTGGAGGCAGATGTGAACCACGTTCCGGATCCCAG...GAGTTTTTCAGCTTCTCTCTCCCAGCTGACTGTGTATCCTAGCCACCTCCCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | GATCAAACTCAGGTTGTCAGGCCTGGTGGTCATGTGTCTGCCTCCACTGAGCCATCTGAGAACCAGATGTaGAGACGCCTCCTCCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: DQTQVVRPGGHVSASTEPSENQM*RRLLQS Trigger: TGACTGGAGGAGGCGTCTGCACATCTGGTTCTCAGA...TGGCTCAGTGGAGGCAGACACATGACCACCAGGCCTGACAACCTGAGTTTGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | TTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAAGGGCAGCCCAGAGGCTaGGCGCATGGCTGGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LYVCTYVGAHHTTHMEVKGQPRG*AHGWEQ Trigger: CTGCTCCCAGCCATGCGCCCAGCCTCTGGGCTGCCC...TTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| 3UTR CAA 72 bp | TTAAAGAAACCCGTTCTCCCATCCACCATGTGGGTCTaGGGGATCAAACTCAGGTTGTCAGGCCTGGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: LKKPVLPSTMWV*GIKLRLSGLVV Trigger: GACCACCAGGCCTGACAACCTGAGTTTGATCCCCAAGACCCACATGGTGGATGGGAGAACGGGTTTCTTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR TCA 90 bp | ATATGGAAGTCAAAAAGACAACTTAAAGAAACCCGTTCTCCCATCCACCATGTGGCAGCTGCTCCGAGCTaGACGACGTGCGCTTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: IWKSKRQLKETRSPIHHVAAAPS*TTCACG Trigger: GCCGCAAGCGCACGTCGTTCAGCTCGGAGCAGCTGC...CACATGGTGGATGGGAGAACGGGTTTCTTTAAGTTGTCTTTTTGACTTCCATAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | GTCCAGAGTACAGGATGTGGGATAGAGTGTGTGAACCCACTTACAACTAGGACTACGAGCTCCAGCAACTaGAGCTGCTCCGAGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: VQSTGCGIECVNPLTTRTTSSSN*SCSELN Trigger: GTTCAGCTCGGAGCAGCTGCAGTTGCTGGAGCTCGT...AGTCCTAGTTGTAAGTGGGTTCACACACTCTATCCCACATCCTGTACTCTGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | TTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAGCGCGGCGGGGAAGATaGGGAAAGCGGCGCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: FVCVYLCGCTPYHTYGSQARRGR*GKRRLL Trigger: CAGAAGGCGCCGCTTTCCCCATCTTCCCCGCCGCGC...TTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | GTGATGAGTCCAGAGTACAGGATGTGGGATAGAGTGTGTGAACCCACTTACAACCCAGGAGCAGGGCAATaGAGGAAAACTCCCCGCCTT | + |
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Preference number: 4 (lower is better) Translates to: VMSPEYRMWDRVCEPTYNPGAGQ*RKTPRL Trigger: AAGGCGGGGAGTTTTCCTCCATTGCCCTGCTCCTGG...GTTGTAAGTGGGTTCACACACTCTATCCCACATCCTGTACTCTGGACTCATCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR TCA 90 bp | CAGGGGAGGTGGCTAGGATACACAGTCAGCTGGGAGAGAGAAGCTGAAAAACTCCCAGGAGTCCAACTTTaGGCCAATATCTTCAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: QGRWLGYTVSWEREAEKLPGVQL*ANIFRE Trigger: CTCTCTGAAGATATTGGCTCAAAGTTGGACTCCTGG...GAGTTTTTCAGCTTCTCTCTCCCAGCTGACTGTGTATCCTAGCCACCTCCCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | GTCTTGGTGATGAGTCCAGAGTACAGGATGTGGGATAGAGTGTGTGAACCCACTAAGGCAGAAAAGATGTaGTCCTCCCAGGAGTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: VLVMSPEYRMWDRVCEPTKAEKM*SSQESN Trigger: GTTGGACTCCTGGGAGGAGCACATCTTTTCTGCCTT...AGTGGGTTCACACACTCTATCCCACATCCTGTACTCTGGACTCATCACCAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | AGGAATGACAGACAGAGAAGCACATTTTGGGTAAATGATCTTAAGGTTTGCATACAGAGGCTGGGCGCATaGCTGGGAGCAGCTGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: RNDRQRSTFWVNDLKVCIQRLGA*LGAAAL Trigger: GAGGGCAGCTGCTCCCAGCCATGCGCCCAGCCTCTG...TATGCAAACCTTAAGATCATTTACCCAAAATGTGCTTCTCTGTCTGTCATTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR GCA 90 bp | TTATGTGGGTGCACACCATACCACACATATGGAAGTCAAAAAGACAACTTAAAGAACGTGGTTCACATCTaGCTCCAGGGGCAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: LCGCTPYHTYGSQKDNLKNVVHI*LQGQLR Trigger: CCTCAGCTGCCCCTGGAGGCAGATGTGAACCACGTT...CTTTAAGTTGTCTTTTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | TTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGAAGTCAAACCGCAAGTGGATGTCTaGGTACATGGTCTGTCGGAA | + |
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Preference number: 4 (lower is better) Translates to: LYVCTYVGAHHTTHMEVKPQVDV*VHGLSE Trigger: TTCCGACAGACCATGTACCCAGACATCCACTTGCGG...TTTGACTTCCATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CCA 90 bp | AGGAATGACAGACAGAGAAGCACATTTTGGGTAAATGATCTTAAGGTTTGCATAGGATGTCTGGGTACATaGTCTGTCGGAAGACGAGCT | + |
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Preference number: 4 (lower is better) Translates to: RNDRQRSTFWVNDLKVCIGCLGT*SVGRRA Trigger: AGCTCGTCTTCCGACAGACCATGTACCCAGACATCC...TATGCAAACCTTAAGATCATTTACCCAAAATGTGCTTCTCTGTCTGTCATTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR TCA 90 bp | AGGAATGACAGACAGAGAAGCACATTTTGGGTAAATGATCTTAAGGTTTGCATACTTGAGGATAAGGGCTaGAATGACTTCCCACTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RNDRQRSTFWVNDLKVCILEDKG*NDFPLW Trigger: CCAGAGTGGGAAGTCATTTCAGCCCTTATCCTCAAG...TATGCAAACCTTAAGATCATTTACCCAAAATGTGCTTCTCTGTCTGTCATTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR TCA 90 bp | AGGAATGACAGACAGAGAAGCACATTTTGGGTAAATGATCTTAAGGTTTGCATATACGTTTCAAAACTCTaGGAACCAGATGTGCAGACG | + |
|
Preference number: 4 (lower is better) Translates to: RNDRQRSTFWVNDLKVCIYVSKL*EPDVQT Trigger: CGTCTGCACATCTGGTTCTCAGAGTTTTGAAACGTA...TATGCAAACCTTAAGATCATTTACCCAAAATGTGCTTCTCTGTCTGTCATTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 90 bp | TGCTGGGGCGCGAGAGTCGTGGGGCGCCGCGGGCAGCCCAGAGGCTaGGCGCATGGCTGGGAGCAGCTGCCCTCCGGGATGCGCGGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: CWGARVVGRRGQPRG*AHGWEQLPSGMRGG Trigger: CCCGCCGCGCATCCCGGAGGGCAGCTGCTCCCAGCCATGCGCCCAGCCTCTGGGCTGCCCGCGGCGCCCCACGACTCTCGCGCCCCAGCA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 90 bp | ACGTGCGCTTGCGGCGCTGTGGCGCCGACGGGGCGGCCGAGCCTTTaGAGGGTCCGGGCGGATCCAGGCCGGCGGGGGTCTGCGCTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: TCACGAVAPTGRPSL*RVRADPGRRGSALW Trigger: CCACAGCGCAGACCCCCGCCGGCCTGGATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCAAGCGCACGT 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 90 bp | CAACTGCAGCTGCTCCGAGCTGAACGACGTGCGCTTGCGGCGCTGTaGCGCCGACGGGGCGGCCGAGCCTTTGGAGGGTCCGGGCGGATC | + |
|
Preference number: 5 (lower is better) Translates to: QLQLLRAERRALAAL*RRRGGRAFGGSGRI Trigger: GATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCAAGCGCACGTCGTTCAGCTCGGAGCAGCTGCAGTTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 90 bp | GCCGAGCCTTTGGAGGGTCCGGGCGGATCCAGGCCGGCGGGGGTCTaGGCTGTGGGACTGGAGTCGCGGTTTGGAAAGCACTGCGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: AEPLEGPGGSRPAGV*AVGLESRFGKHCVA Trigger: AGCCACGCAGTGCTTTCCAAACCGCGACTCCAGTCCCACAGCGCAGACCCCCGCCGGCCTGGATCCGCCCGGACCCTCCAAAGGCTCGGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 90 bp | GCATGGCTGGGAGCAGCTGCCCTCCGGGATGCGCGGCGGGGAAGATaGGGAAAGCGGCGCCTTCTGCGAACTGGAGCTGCTGGGACCCTG | + |
|
Preference number: 5 (lower is better) Translates to: AWLGAAALRDARRGR*GKRRLLRTGAAGTL Trigger: CAGGGTCCCAGCAGCTCCAGTTCGCAGAAGGCGCCGCTTTCCCCATCTTCCCCGCCGCGCATCCCGGAGGGCAGCTGCTCCCAGCCATGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 90 bp | TCTGGGTACATGGTCTGTCGGAAGACGAGCTCCAGCAACTGCAGCTaGTCCGAGCTGAACGACGTGCGCTTGCGGCGCTGTGGCGCCGAC | + |
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Preference number: 5 (lower is better) Translates to: SGYMVCRKTSSSNCS*SELNDVRLRRCGAD Trigger: GTCGGCGCCACAGCGCCGCAAGCGCACGTCGTTCAGCTCGGAGCAGCTGCAGTTGCTGGAGCTCGTCTTCCGACAGACCATGTACCCAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 90 bp | CTGGACTCGGGTAGCAGCGTGAGCGCAGCCAGGCGCTCCCGCAAGTaGATGTCTGGGTACATGGTCTGTCGGAAGACGAGCTCCAGCAAC | + |
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Preference number: 5 (lower is better) Translates to: LDSGSSVSAARRSRK*MSGYMVCRKTSSSN Trigger: GTTGCTGGAGCTCGTCTTCCGACAGACCATGTACCCAGACATCCACTTGCGGGAGCGCCTGGCTGCGCTCACGCTGCTACCCGAGTCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS TCA 90 bp | GGAGCAGGGCAATGGAGGAAAACTCCCCGCCTTGAGGATAAGGGCTaGAATGACTTCCCACTCTGGCGCCTGGACTTGGCCCGTCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: GAGQWRKTPRLEDKG*NDFPLWRLDLARRF Trigger: GAACCGACGGGCCAAGTCCAGGCGCCAGAGTGGGAAGTCATTTCAGCCCTTATCCTCAAGGCGGGGAGTTTTCCTCCATTGCCCTGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 90 bp | GACGCCTCCTCCAGTCATGCTGGGATCCGGAACGTGGTTCACATCTaGCTCCAGGGGCAGCTGAGGCTTCAAACACCTAGCTTCAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: DASSSHAGIRNVVHI*LQGQLRLQTPSFSP Trigger: GGGACTGAAGCTAGGTGTTTGAAGCCTCAGCTGCCCCTGGAGGCAGATGTGAACCACGTTCCGGATCCCAGCATGACTGGAGGAGGCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 90 bp | TTTCAAAACTCTGAGAACCAGATGTGCAGACGCCTCCTCCAGTCATaGTGGGATCCGGAACGTGGTTCACATCTGCCTCCAGGGGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: FQNSENQMCRRLLQS*WDPERGSHLPPGAA Trigger: AGCTGCCCCTGGAGGCAGATGTGAACCACGTTCCGGATCCCAGCATGACTGGAGGAGGCGTCTGCACATCTGGTTCTCAGAGTTTTGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CAA 90 bp | CTATTTATTTTGTATGTGTGTACTTATGTGGGTGCACACCATACCACACATATGGGGGCGGCCGAGCCTTaGGAGGGTCCGGGCGGATCC | + |
|
Preference number: 5 (lower is better) Translates to: LFILYVCTYVGAHHTTHMGAAEP*EGPGGS Trigger: GGATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCC...CATATGTGTGGTATGGTGTGCACCCACATAAGTACACACATACAAAATAAATAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS-3UTR CAA 90 bp | CAGGGGAGGTGGCTAGGATACACAGTCAGCTGGGAGAGAGAAGCTGAAAAACTCGGAAAACTCCCCGCCTaGAGGATAAGGGCTGAAATG | + |
|
Preference number: 5 (lower is better) Translates to: QGRWLGYTVSWEREAEKLGKLPA*RIRAEM Trigger: CATTTCAGCCCTTATCCTCAAGGCGGGGAGTTTTCC...GAGTTTTTCAGCTTCTCTCTCCCAGCTGACTGTGTATCCTAGCCACCTCCCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 72 bp | TGCGGCGCTGTGGCGCCGACGGGGCGGCCGAGCCTTTaGAGGGTCCGGGCGGATCCAGGCCGGCGGGGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: CGAVAPTGRPSL*RVRADPGRRGS Trigger: AGACCCCCGCCGGCCTGGATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CAA 72 bp | TTGCGGCGCTGTGGCGCCGACGGGGCGGCCGAGCCTTaGGAGGGTCCGGGCGGATCCAGGCCGGCGGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: LRRCGADGAAEP*EGPGGSRPAGV Trigger: GACCCCCGCCGGCCTGGATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCAA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CAA 90 bp | GACGTGCGCTTGCGGCGCTGTGGCGCCGACGGGGCGGCCGAGCCTTaGGAGGGTCCGGGCGGATCCAGGCCGGCGGGGGTCTGCGCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: DVRLRRCGADGAAEP*EGPGGSRPAGVCAV Trigger: CACAGCGCAGACCCCCGCCGGCCTGGATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCAAGCGCACGTC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 72 bp | GCTGGGCGCATGGCTGGGAGCAGCTGCCCTCCGGGATaGGCGGCGGGGAAGATGGGGAAAGCGGCGCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: AGRMAGSSCPPG*AAGKMGKAAPS Trigger: AGAAGGCGCCGCTTTCCCCATCTTCCCCGCCGCGCATCCCGGAGGGCAGCTGCTCCCAGCCATGCGCCCAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 72 bp | ACTGGAGTCGCGGTTTGGAAAGCACTGCGTGGCTGCTaGGGCGCGAGAGTCGTGGGGCGCCGCGGGCAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: TGVAVWKALRGC*GARVVGRRGQP Trigger: GGGCTGCCCGCGGCGCCCCACGACTCTCGCGCCCCAGCAGCCACGCAGTGCTTTCCAAACCGCGACTCCAGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CAA 72 bp | AGCAACTGCAGCTGCTCCGAGCTGAACGACGTGCGCTaGCGGCGCTGTGGCGCCGACGGGGCGGCCGAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: SNCSCSELNDVR*RRCGADGAAEP Trigger: AGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCAAGCGCACGTCGTTCAGCTCGGAGCAGCTGCAGTTGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 72 bp | CTGTGGGACTGGAGTCGCGGTTTGGAAAGCACTGCGTaGCTGCTGGGGCGCGAGAGTCGTGGGGCGCCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: LWDWSRGLESTA*LLGRESRGAPR Trigger: CCGCGGCGCCCCACGACTCTCGCGCCCCAGCAGCCACGCAGTGCTTTCCAAACCGCGACTCCAGTCCCACAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS TCA 72 bp | GGAACCACACCTGGATCCTGGACTCGGGTAGCAGCGTaGGCGCAGCCAGGCGCTCCCGCAAGTGGATGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: GTTPGSWTRVAA*AQPGAPASGCL Trigger: CAGACATCCACTTGCGGGAGCGCCTGGCTGCGCTCACGCTGCTACCCGAGTCCAGGATCCAGGTGTGGTTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 72 bp | GGTAGCAGCGTGAGCGCAGCCAGGCGCTCCCGCAAGTaGATGTCTGGGTACATGGTCTGTCGGAAGACGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GSSVSAARRSRK*MSGYMVCRKTS Trigger: GCTCGTCTTCCGACAGACCATGTACCCAGACATCCACTTGCGGGAGCGCCTGGCTGCGCTCACGCTGCTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 72 bp | ATGGTCTGTCGGAAGACGAGCTCCAGCAACTGCAGCTaGTCCGAGCTGAACGACGTGCGCTTGCGGCGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: MVCRKTSSSNCS*SELNDVRLRRC Trigger: ACAGCGCCGCAAGCGCACGTCGTTCAGCTCGGAGCAGCTGCAGTTGCTGGAGCTCGTCTTCCGACAGACCAT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 72 bp | CAGCCAGGCGCTCCCGCAAGTGGATGTCTGGGTACATaGTCTGTCGGAAGACGAGCTCCAGCAACTGCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: QPGAPASGCLGT*SVGRRAPATAA Trigger: AGCTGCAGTTGCTGGAGCTCGTCTTCCGACAGACCATGTACCCAGACATCCACTTGCGGGAGCGCCTGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CCA 72 bp | GAGAACCAGATGTGCAGACGCCTCCTCCAGTCATGCTaGGATCCGGAACGTGGTTCACATCTGCCTCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: ENQMCRRLLQSC*DPERGSHLPPG Trigger: CCCTGGAGGCAGATGTGAACCACGTTCCGGATCCCAGCATGACTGGAGGAGGCGTCTGCACATCTGGTTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS TCA 72 bp | TCCGGAACGTGGTTCACATCTGCCTCCAGGGGCAGCTaGGGCTTCAAACACCTAGCTTCAGTCCCAGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: SGTWFTSASRGS*GFKHLASVPGA Trigger: TGCTCCTGGGACTGAAGCTAGGTGTTTGAAGCCTCAGCTGCCCCTGGAGGCAGATGTGAACCACGTTCCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 72 bp | TCCAGTCATGCTGGGATCCGGAACGTGGTTCACATCTaGCTCCAGGGGCAGCTGAGGCTTCAAACACCTAGC | + |
|
Preference number: 6 (lower is better) Translates to: SSHAGIRNVVHI*LQGQLRLQTPS Trigger: GCTAGGTGTTTGAAGCCTCAGCTGCCCCTGGAGGCAGATGTGAACCACGTTCCGGATCCCAGCATGACTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS TCA 72 bp | CAATGGAGGAAAACTCCCCGCCTTGAGGATAAGGGCTaGAATGACTTCCCACTCTGGCGCCTGGACTTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: QWRKTPRLEDKG*NDFPLWRLDLA Trigger: GGCCAAGTCCAGGCGCCAGAGTGGGAAGTCATTTCAGCCCTTATCCTCAAGGCGGGGAGTTTTCCTCCATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS GCA 72 bp | TCTGAGAACCAGATGTGCAGACGCCTCCTCCAGTCATaGTGGGATCCGGAACGTGGTTCACATCTGCCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: SENQMCRRLLQS*WDPERGSHLPP Trigger: TGGAGGCAGATGTGAACCACGTTCCGGATCCCAGCATGACTGGAGGAGGCGTCTGCACATCTGGTTCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CAA 72 bp | AGGCAGAAAAGATGTGCTCCTCCCAGGAGTCCAACTTaGAGCCAATATCTTCAGAGAGAGACGAATACGTTT | + |
|
Preference number: 6 (lower is better) Translates to: RQKRCAPPRSPT*SQYLQRETNTF Trigger: AAACGTATTCGTCTCTCTCTGAAGATATTGGCTCAAAGTTGGACTCCTGGGAGGAGCACATCTTTTCTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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| CDS CAA 90 bp | AGTTACCTAAGGCAGAAAAGATGTGCTCCTCCCAGGAGTCCAACTTaGAGCCAATATCTTCAGAGAGAGACGAATACGTTTCAAAACTCT | + |
|
Preference number: 6 (lower is better) Translates to: SYLRQKRCAPPRSPT*SQYLQRETNTFQNS Trigger: AGAGTTTTGAAACGTATTCGTCTCTCTCTGAAGATATTGGCTCAAAGTTGGACTCCTGGGAGGAGCACATCTTTTCTGCCTTAGGTAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027778.8 |
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