Pregenerated sensors for MITD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026088Ensembl transcript IDs: ENSMUST00000027257.10, ENSMUST00000139725.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CCTCTGAGGTGTCAGGCTCTGCCTCACAAGCCTGCTTCATCTTTTTaGCACTATGCCCTGTGGGATGCAGAAGGAAGAAGATCCTCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: PLRCQALPHKPASSF*HYALWDAEGRRSSP Trigger: TGGAGAGGATCTTCTTCCTTCTGCATCCCACAGGGCATAGTGCAAAAAAGATGAAGCAGGCTTGTGAGGCAGAGCCTGACACCTCAGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR-3UTR TCA 90 bp | CTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTCATGAGTTCGAATCTTGGTCCGAGAGGAGGAACCTCTaGGGTGTCAGGCTCTGCCTC | + |
|
Preference number: 2 (lower is better) Translates to: LCYGLNVAPEVHEFESWSERRNL*GVRLCL Trigger: GAGGCAGAGCCTGACACCTCAGAGGTTCCTCCTCTC...GGACCAAGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR-3UTR CCA 90 bp | TTGGTCCCTAGTACAGCAGTGTTGAGAGGAGGAACCTCTGAGGTGTCAGGCTCTTTGCACTATGCCCTGTaGGATGCAGAAGGAAGAAGA | + |
|
Preference number: 2 (lower is better) Translates to: LVPSTAVLRGGTSEVSGSLHYAL*DAEGRR Trigger: TCTTCTTCCTTCTGCATCCCACAGGGCATAGTGCAA...AGAGCCTGACACCTCAGAGGTTCCTCCTCTCAACACTGCTGTACTAGGGACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR-3UTR CCA 90 bp | CCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCACTGGCTTTTGAAGACTaGATCCACGACCACATACAT | + |
|
Preference number: 2 (lower is better) Translates to: PLSMKNCFRLLCQHKVPALAFED*IHDHIH Trigger: ATGTATGTGGTCGTGGATCCAGTCTTCAAAAGCCAG...TGCTGGGACCTTGTGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| 3UTR CAA 90 bp | GTAAATAAAAAGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTaGAATGTGGCCCCAGAAGTTCATGAGTTCGAATCTTGGTCCCTA | + |
|
Preference number: 2 (lower is better) Translates to: VNKKEKQTQYLLCYG*NVAPEVHEFESWSL Trigger: TAGGGACCAAGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTTTTTATTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR-3UTR CAA 90 bp | CAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAATGAAAATCTGGCTTTaGAAGACTGGATCCACGACC | + |
|
Preference number: 3 (lower is better) Translates to: QLALKAHPHMGSFYSRSPMKIWL*KTGSTT Trigger: GGTCGTGGATCCAGTCTTCAAAAGCCAGATTTTCAT...TGGAGATCGACTGTAAAATGAGCCCATGTGTGGGTGGGCTTTTAAAGCCAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAGCCGATTCTTTTCCTTaGGAGAAATTCTCCTTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: QLALKAHPHMGSFYSRSPADSFP*EKFSFC Trigger: ACAGAAGGAGAATTTCTCCAAAGGAAAAGAATCGGC...TGGAGATCGACTGTAAAATGAGCCCATGTGTGGGTGGGCTTTTAAAGCCAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| 3UTR TCA 72 bp | GCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTCATaGGTTCGAATCTTGGTCCCTAGTACAGCAGTGTTG | + |
|
Preference number: 3 (lower is better) Translates to: ALLWFECGPRSS*VRILVPSTAVL Trigger: CAACACTGCTGTACTAGGGACCAAGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR-3UTR CAA 90 bp | AAGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAACCTAGTACAGCAGTGTaGAGAGGAGGAACCTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: KEKQTQYLLCYGLNVAPEPSTAV*RGGTSE Trigger: CTCAGAGGTTCCTCCTCTCAACACTGCTGTACTAGG...TTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR TCA 72 bp | AGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTaGATGTGGCCCCAGAAGTTCATGAGTTCGAATCTT | + |
|
Preference number: 3 (lower is better) Translates to: RRNKPNICFAMV*MWPQKFMSSNL Trigger: AAGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR GCA 72 bp | TTTAAAAGCATGCTAATTCCACTTTCAATGAAGAATTaGTTCCGATTACTTTGTCAGCACAAGGTCCCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: FKSMLIPLSMKN*FRLLCQHKVPA Trigger: TGCTGGGACCTTGTGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATTAGCATGCTTTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| 3UTR GCA 72 bp | GTAAATAAAAAGGAGAAACAAACCCAATATTTGCTTTaGTATGGTTTGAATGTGGCCCCAGAAGTTCATGAG | + |
|
Preference number: 3 (lower is better) Translates to: VNKKEKQTQYLL*YGLNVAPEVHE Trigger: CTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTTTTTATTTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CCA 90 bp | CAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCACACACCAGAGCCTGCTaGTACCGGGACTCTGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: QLALKAHPHMGSFYSRSPHTRAC*YRDSAS Trigger: GGATGCAGAGTCCCGGTACCAGCAGGCTCTGGTGTG...TGGAGATCGACTGTAAAATGAGCCCATGTGTGGGTGGGCTTTTAAAGCCAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR GCA 90 bp | TTGGTCCCTAGTACAGCAGTGTTGAGAGGAGGAACCTCTGAGGTGTCAGGCTCTTCCAGGCCACTACTTTaGTGTGTGTTCCCCAAACCT | + |
|
Preference number: 4 (lower is better) Translates to: LVPSTAVLRGGTSEVSGSSRPLL*CVFPKP Trigger: AGGTTTGGGGAACACACAGCAAAGTAGTGGCCTGGA...AGAGCCTGACACCTCAGAGGTTCCTCCTCTCAACACTGCTGTACTAGGGACCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR TCA 90 bp | CAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCAGACCCTGTGGTTTCTTaGAATAATCAAGGCCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QADSFPLEKFSFCRHRQADPVVS*NNQGPF Trigger: GAAGGGGCCTTGATTATTTCAAGAAACCACAGGGTC...TGCCTGCCGATGACGACAGAAGGAGAATTTCTCCAAAGGAAAAGAATCGGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR GCA 90 bp | GTAGTATTCAGTTCTAGCAACAGAAAATGGGCTGAGGTCACCTACAGCAGAGACGTGCCTTTCAGAACCTaGAAGAGCATGTCAATCCCC | + |
|
Preference number: 4 (lower is better) Translates to: VVFSSSNRKWAEVTYSRDVPFRT*KSMSIP Trigger: GGGGATTGACATGCTCTTGCAGGTTCTGAAAGGCAC...GTCTCTGCTGTAGGTGACCTCAGCCCATTTTCTGTTGCTAGAACTGAATACTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR GCA 90 bp | AGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGGTGCCTTTCAGAACCTaGAAGAGCATGTCAATCCCC | + |
|
Preference number: 4 (lower is better) Translates to: RRQADSFPLEKFSFCRHRVPFRT*KSMSIP Trigger: GGGGATTGACATGCTCTTGCAGGTTCTGAAAGGCAC...CCGATGACGACAGAAGGAGAATTTCTCCAAAGGAAAAGAATCGGCTTGCCTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR GCA 90 bp | CCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCAGGCCACTACTTTaGTGTGTGTTCCCCAAACCT | + |
|
Preference number: 4 (lower is better) Translates to: PRPHTSRRQADSFPLEKFSRPLL*CVFPKP Trigger: AGGTTTGGGGAACACACAGCAAAGTAGTGGCCTGGA...GAATTTCTCCAAAGGAAAAGAATCGGCTTGCCTTCTAGATGTATGTGGTCGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR CCA 90 bp | CCTCTATCCTTACACATTATCCAGTGTGTAGTATTCAGTTCTAGCAACAGAAAACACACCAGAGCCTGCTaGTACCGGGACTCTGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: PLSLHIIQCVVFSSSNRKHTRAC*YRDSAS Trigger: GGATGCAGAGTCCCGGTACCAGCAGGCTCTGGTGTG...TTTTCTGTTGCTAGAACTGAATACTACACACTGGATAATGTGTAAGGATAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| 3UTR CAA 72 bp | CCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTaGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PHTSRRQADSFP*EKFSFCRHRQA Trigger: TGCCTGCCGATGACGACAGAAGGAGAATTTCTCCAAAGGAAAAGAATCGGCTTGCCTTCTAGATGTATGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR TCA 90 bp | GTAGTATTCAGTTCTAGCAACAGAAAATGGGCTGAGGTCACCTACAGCAGAGACCCAGAGGTGAGAAGGTaGATGGTTCTTACTTTACAC | + |
|
Preference number: 4 (lower is better) Translates to: VVFSSSNRKWAEVTYSRDPEVRR*MVLTLH Trigger: GTGTAAAGTAAGAACCATTCACCTTCTCACCTCTGG...GTCTCTGCTGTAGGTGACCTCAGCCCATTTTCTGTTGCTAGAACTGAATACTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR TCA 90 bp | GACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTCCAGAGGTGAGAAGGTaGATGGTTCTTACTTTACAC | + |
|
Preference number: 4 (lower is better) Translates to: DHIHLEGKPILFLWRNSPPEVRR*MVLTLH Trigger: GTGTAAAGTAAGAACCATTCACCTTCTCACCTCTGG...AGGAGAATTTCTCCAAAGGAAAAGAATCGGCTTGCCTTCTAGATGTATGTGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR TCA 90 bp | AAGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGACCCTGTGGTTTCTTaGAATAATCAAGGCCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KEKQTQYLLCYGLNVAPEDPVVS*NNQGPF Trigger: GAAGGGGCCTTGATTATTTCAAGAAACCACAGGGTC...TTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR TCA 90 bp | AAGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAAGAGTGACTCGTAACTaGAGCCAGTTGCATTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: KEKQTQYLLCYGLNVAPERVTRN*SQLHSL Trigger: AAGAGAATGCAACTGGCTTCAGTTACGAGTCACTCT...TTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR TCA 90 bp | AATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGAGTGACTCGTAACTaGAGCCAGTTGCATTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: NSTFNEELLPITLSAQGPRVTRN*SQLHSL Trigger: AAGAGAATGCAACTGGCTTCAGTTACGAGTCACTCT...GGGACCTTGTGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR TCA 90 bp | GGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTCCACTGTTGTTTCATaGCACGGTCTCAAGTCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: GETNPIFALLWFECGPRSSTVVS*HGLKSK Trigger: TTTAGACTTGAGACCGTGTCATGAAACAACAGTGGA...ACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR GCA 90 bp | TATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTCATGAGTTCGAATCTTACTGGACTCTTTGGTaGCTTTCAGAACCTGCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: YLLCYGLNVAPEVHEFESYWTLW*LSEPAR Trigger: TCTTGCAGGTTCTGAAAGGCACCAAAGAGTCCAGTA...AGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CCA 90 bp | TATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTCATGAGTTCGAATCTTTTTACTGGACTCTTTaGTGCCTTTCAGAACCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: YLLCYGLNVAPEVHEFESFYWTL*CLSEPA Trigger: TGCAGGTTCTGAAAGGCACCAAAGAGTCCAGTAAAA...AGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CCA 90 bp | GGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTGAACACATCTTTTACTaGACTCTTTGGTGCCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: GETNPIFALLWFECGPRSEHIFY*TLWCLS Trigger: TGAAAGGCACCAAAGAGTCCAGTAAAAGATGTGTTC...ACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR TCA 90 bp | CCTCTATCCTTACACATTATCCAGTGTGTAGTATTCAGTTCTAGCAACAGAAAACTTCATACCCAGAGGTaGGAAGGTGAATGGTTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: PLSLHIIQCVVFSSSNRKLHTQR*EGEWFL Trigger: TAAGAACCATTCACCTTCTCACCTCTGGGTATGAAG...TTTTCTGTTGCTAGAACTGAATACTACACACTGGATAATGTGTAAGGATAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR TCA 90 bp | CTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCTCCACTGTTGTTTCATaGCACGGTCTCAAGTCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: LIPLSMKNCFRLLCQHKVSTVVS*HGLKSK Trigger: TTTAGACTTGAGACCGTGTCATGAAACAACAGTGGA...GACCTTGTGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR GCA 90 bp | AAGCATGCTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCATACTGGACTCTTTGGTaGCTTTCAGAACCTGCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: KHANSTFNEELLPITLSAYWTLW*LSEPAR Trigger: TCTTGCAGGTTCTGAAAGGCACCAAAGAGTCCAGTA...TGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATTAGCATGCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| 3UTR CAA 72 bp | AAGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTaGAATGTGGCCCCAGAAGTTCATGAGTTCGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: KEKQTQYLLCYG*NVAPEVHEFES Trigger: AGATTCGAACTCATGAACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CCA 90 bp | AAAAGCATGCTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGTTTTACTGGACTCTTTaGTGCCTTTCAGAACCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: KSMLIPLSMKNCFRLLCQFYWTL*CLSEPA Trigger: TGCAGGTTCTGAAAGGCACCAAAGAGTCCAGTAAAA...CTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATTAGCATGCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR GCA 90 bp | CCTCTATCCTTACACATTATCCAGTGTGTAGTATTCAGTTCTAGCAACAGAAAATTTCTTTATATTTTCTaGTCTATCCATGTAGCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: PLSLHIIQCVVFSSSNRKFLYIF*SIHVAG Trigger: TCCGGCTACATGGATAGAGCAGAAAATATAAAGAAA...TTTTCTGTTGCTAGAACTGAATACTACACACTGGATAATGTGTAAGGATAGAGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CCA 90 bp | CCTCTATCCTTACACATTATCCAGTGTGTAGTATTCAGTTCTAGCAACAGAAAAAGAAAAACGACCCTGTaGTTTCTTGAAATAATCAAG | + |
|
Preference number: 4 (lower is better) Translates to: PLSLHIIQCVVFSSSNRKRKTTL*FLEIIK Trigger: CTTGATTATTTCAAGAAACCACAGGGTCGTTTTTCT...TTTTCTGTTGCTAGAACTGAATACTACACACTGGATAATGTGTAAGGATAGAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CCA 90 bp | AAGCATGCTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCAAGAAAAACGACCCTGTaGTTTCTTGAAATAATCAAG | + |
|
Preference number: 4 (lower is better) Translates to: KHANSTFNEELLPITLSARKTTL*FLEIIK Trigger: CTTGATTATTTCAAGAAACCACAGGGTCGTTTTTCT...TGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATTAGCATGCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR CAA 90 bp | GGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTTCCAGGCCACTACTTaGCTGTGTGTTCCCCAAACC | + |
|
Preference number: 5 (lower is better) Translates to: GETNPIFALLWFECGPRSFQATT*LCVPQT Trigger: GGTTTGGGGAACACACAGCAAAGTAGTGGCCTGGAA...ACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CAA 90 bp | ATTCTCCTTCTGTCGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCATAGAGCTGATGAGTTaGTCTAATATAAGGGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: ILLLSSSAGIRIRGRNVTIELMS*SNIRVF Trigger: GAAGACCCTTATATTAGACAAACTCATCAGCTCTAT...GGTTACATTCCTGCCACGGATTCTGATGCCTGCCGATGACGACAGAAGGAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR CAA 90 bp | CAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCAGAAATATGTCCACTGTaGTTTCATGACACGGTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: QADSFPLEKFSFCRHRQAEICPL*FHDTVS Trigger: TGAGACCGTGTCATGAAACAACAGTGGACATATTTC...TGCCTGCCGATGACGACAGAAGGAGAATTTCTCCAAAGGAAAAGAATCGGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS TCA 90 bp | CTTTGCTGTGTGTTCCCCAAACCTTCATACCCAGAGGTGAGAAGGTaGATGGTTCTTACTTTACACGGCTTCTTAATCAGCATCTCACAA | + |
|
Preference number: 5 (lower is better) Translates to: LCCVFPKPSYPEVRR*MVLTLHGFLISISQ Trigger: TTGTGAGATGCTGATTAAGAAGCCGTGTAAAGTAAGAACCATTCACCTTCTCACCTCTGGGTATGAAGGTTTGGGGAACACACAGCAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027257.10 ENSMUST00000139725.8 |
||
| CDS-3UTR CAA 90 bp | GACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTCTTTTACTGGACTCTTaGGTGCCTTTCAGAACCTGC | + |
|
Preference number: 5 (lower is better) Translates to: DHIHLEGKPILFLWRNSPLLLDS*VPFRTC Trigger: GCAGGTTCTGAAAGGCACCAAAGAGTCCAGTAAAAG...AGGAGAATTTCTCCAAAGGAAAAGAATCGGCTTGCCTTCTAGATGTATGTGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR CAA 90 bp | GTAGTATTCAGTTCTAGCAACAGAAAATGGGCTGAGGTCACCTACAGCAGAGACGAAATATGTCCACTGTaGTTTCATGACACGGTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: VVFSSSNRKWAEVTYSRDEICPL*FHDTVS Trigger: TGAGACCGTGTCATGAAACAACAGTGGACATATTTC...GTCTCTGCTGTAGGTGACCTCAGCCCATTTTCTGTTGCTAGAACTGAATACTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CAA 90 bp | AAGGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAACTTTTACTGGACTCTTaGGTGCCTTTCAGAACCTGC | + |
|
Preference number: 5 (lower is better) Translates to: KEKQTQYLLCYGLNVAPELLLDS*VPFRTC Trigger: GCAGGTTCTGAAAGGCACCAAAGAGTCCAGTAAAAG...TTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CAA 90 bp | GTAGTATTCAGTTCTAGCAACAGAAAATGGGCTGAGGTCACCTACAGCAGAGACATAGAGCTGATGAGTTaGTCTAATATAAGGGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VVFSSSNRKWAEVTYSRDIELMS*SNIRVF Trigger: GAAGACCCTTATATTAGACAAACTCATCAGCTCTAT...GTCTCTGCTGTAGGTGACCTCAGCCCATTTTCTGTTGCTAGAACTGAATACTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CAA 90 bp | CCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTTAATCATCCATCCATaGTTGAACCTAATTTCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: PRPHTSRRQADSFPLEKFLIIHP*LNLISR Trigger: CCGAGAAATTAGGTTCAACAATGGATGGATGATTAA...GAATTTCTCCAAAGGAAAAGAATCGGCTTGCCTTCTAGATGTATGTGGTCGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR CAA 90 bp | AATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCATCATCCATCCATTGTaGAACCTAATTTCTCGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: NSTFNEELLPITLSAQGPIIHPL*NLISRS Trigger: TGACCGAGAAATTAGGTTCAACAATGGATGGATGAT...GGGACCTTGTGCTGACAAAGTAATCGGAAGCAATTCTTCATTGAAAGTGGAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139725.8 |
||
| CDS-3UTR CAA 90 bp | GGAGAAACAAACCCAATATTTGCTTTGCTATGGTTTGAATGTGGCCCCAGAAGTTTAATCATCCATCCATaGTTGAACCTAATTTCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: GETNPIFALLWFECGPRSLIIHP*LNLISR Trigger: CCGAGAAATTAGGTTCAACAATGGATGGATGATTAA...ACTTCTGGGGCCACATTCAAACCATAGCAAAGCAAATATTGGGTTTGTTTCTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS-3UTR CAA 90 bp | CCTCTATCCTTACACATTATCCAGTGTGTAGTATTCAGTTCTAGCAACAGAAAAATCATCCATCCATTGTaGAACCTAATTTCTCGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: PLSLHIIQCVVFSSSNRKIIHPL*NLISRS Trigger: TGACCGAGAAATTAGGTTCAACAATGGATGGATGAT...TTTTCTGTTGCTAGAACTGAATACTACACACTGGATAATGTGTAAGGATAGAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027257.10 |
||
| CDS CAA 72 bp | CCCGAGGGACTGCTTTATTTCTTCCAGGCCACTACTTaGCTGTGTGTTCCCCAAACCTTCATACCCAGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: PEGLLYFFQATT*LCVPQTFIPRG Trigger: ACCTCTGGGTATGAAGGTTTGGGGAACACACAGCAAAGTAGTGGCCTGGAAGAAATAAAGCAGTCCCTCGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027257.10 ENSMUST00000139725.8 |
||
| CDS TCA 72 bp | GTGTTCCCCAAACCTTCATACCCAGAGGTGAGAAGGTaGATGGTTCTTACTTTACACGGCTTCTTAATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: VFPKPSYPEVRR*MVLTLHGFLIS Trigger: GCTGATTAAGAAGCCGTGTAAAGTAAGAACCATTCACCTTCTCACCTCTGGGTATGAAGGTTTGGGGAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027257.10 ENSMUST00000139725.8 |
||
| CDS TCA 72 bp | TTTGCTGTGTGTTCCCCAAACCTTCATACCCAGAGGTaGGAAGGTGAATGGTTCTTACTTTACACGGCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: FAVCSPNLHTQR*EGEWFLLYTAS Trigger: AGAAGCCGTGTAAAGTAAGAACCATTCACCTTCTCACCTCTGGGTATGAAGGTTTGGGGAACACACAGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027257.10 ENSMUST00000139725.8 |
||
| CDS CAA 72 bp | ATTTTCGTTCTGAGAACACATCTTTTACTGGACTCTTaGGTGCCTTTCAGAACCTGCAAGAGCATGTCAATC | + |
|
Preference number: 6 (lower is better) Translates to: IFVLRTHLLLDS*VPFRTCKSMSI Trigger: GATTGACATGCTCTTGCAGGTTCTGAAAGGCACCAAAGAGTCCAGTAAAAGATGTGTTCTCAGAACGAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027257.10 ENSMUST00000139725.8 |
||
| CDS CAA 72 bp | CTCACAAAACCGAAGGAAGTTATAGAGCTGATGAGTTaGTCTAATATAAGGGTCTTCTATCCAAACTTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: LTKPKEVIELMS*SNIRVFYPNFC Trigger: ACAGAAGTTTGGATAGAAGACCCTTATATTAGACAAACTCATCAGCTCTATAACTTCCTTCGGTTTTGTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027257.10 ENSMUST00000139725.8 |
||